Contig-U14237-1
Contig ID Contig-U14237-1
Contig update 2002.12.18
Contig sequence
>Contig-U14237-1 (Contig-U14237-1Q) /CSM_Contig/Contig-U14237-1Q.Seq.d
NNNNNNNNNNTTTAATTCAGAACCAATATTTCATAATGAAATGCTAAATA
GGGATTGTTTACAATTGTCACAAGATTATAATTTAATTAGTCAAATTAAA
TCATTCAATAATTCATCATCATCTTATTCATTCGATAGTTTTTCATCAAT
TAATAAAAGTAATACAACCAGTCCAACTACAACAAGTTTATTAGATCAAT
CTTCAAATTCAAACCCTTCAATTATATTGGATACACCATTACAACCATTA
AATGCATCACCAATATTAAGTGATTATGATAGTAATAATAGTAATAGTAA
TACAACATCATTAACCTCATCATCATCATTATCATCATCATCGACAACAA
CTAATTTTGAAGATATTAAAAAACTATCAACTGAATCAATTGCTGATAGA
TTATCTAGATTCATTAGATTCTTTTGTACAAAAACTAAAAGAGAGTATAG
TATTGATGTTGCAAAATTAATGATACCATTTGTGGTTTTATCATTGGTTG
AGGAGATCAATACATTGAAATTAATAAAAATTCAAACGAACCTCCAAAAG
ATCAAATCATTGATAGTAGTGAAACTATGAACCAAATAATAATACTTCTC
AAGAAAATANATTTAAAAAATCTTATATTTTCGATGACATTTCACCAATC
TTAAAAACNAGNAACAAAAA

Gap no gap
Contig length 670
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 291005
End point 291666
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U14237
List of clone(s)

est1=CHA181Z,1,661
Translated Amino Acid sequence
XXXFNSEPIFHNEMLNRDCLQLSQDYNLISQIKSFNNSSSSYSFDSFSSINKSNTTSPTT
TSLLDQSSNSNPSIILDTPLQPLNASPILSDYDSNNSNSNTTSLTSSSSLSSSSTTTNFE
DIKKLSTESIADRLSRFIRFFCTKTKREYSIDVAKLMIPFVVLSLVEEINTLKLIKIQTN
LQKIKSLIVVKL*tk**yfsrkxi*kilyfr*hftnlknxxqk


Translated Amino Acid sequence (All Frames)
Frame A:
xxxx*frtnis**nak*glftivtrl*fn*sn*iiq*fiiilfir*ffin**k*ynqsny
nkfirsifkfkpfnyigytittikcitnik*l********yniinliiiiiiiidnn*f*
ry*ktin*inc**ii*ih*illykn*krv*y*cckindticgfiig*gdqyieinknsne
ppkdqiidssetmnqiiillkkixlknlifsmtfhqs*kxxtk


Frame B:
XXXFNSEPIFHNEMLNRDCLQLSQDYNLISQIKSFNNSSSSYSFDSFSSINKSNTTSPTT
TSLLDQSSNSNPSIILDTPLQPLNASPILSDYDSNNSNSNTTSLTSSSSLSSSSTTTNFE
DIKKLSTESIADRLSRFIRFFCTKTKREYSIDVAKLMIPFVVLSLVEEINTLKLIKIQTN
LQKIKSLIVVKL*tk**yfsrkxi*kilyfr*hftnlknxxqk


Frame C:
xxxliqnqyfimkc*igivynchkiii*lvklnhsiihhhlihsivfhqlikviqpvqlq
qvy*inlqiqtlqlywihhynh*mhhqy*vimiviiviviqhh*phhhhyhhhrqqlilk
ilknyqlnqllidyldsldsfvqklkesivlmlqn**yhlwfyhwlrrsih*n**kfkrt
skrsnh****nyepnnntsqenxfkksyifddispilktxnk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U14237-1 (Contig-U14237-1Q)
/CSM_Contig/Contig-U14237-1Q.Seq.d
(670 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U14237-1 (Contig-U14237-1Q) /CSM_Contig/Conti... 632 0.0
Contig-U14532-1 (Contig-U14532-1Q) /CSM_Contig/Conti... 48 1e-05
Contig-U12521-1 (Contig-U12521-1Q) /CSM_Contig/Conti... 48 1e-05
Contig-U12507-1 (Contig-U12507-1Q) /CSM_Contig/Conti... 48 1e-05
Contig-U02975-1 (Contig-U02975-1Q) /CSM_Contig/Conti... 48 1e-05
Contig-U09402-1 (Contig-U09402-1Q) /CSM_Contig/Conti... 46 5e-05
Contig-U10137-1 (Contig-U10137-1Q) /CSM_Contig/Conti... 44 2e-04
Contig-U07113-1 (Contig-U07113-1Q) /CSM_Contig/Conti... 44 2e-04
Contig-U13982-1 (Contig-U13982-1Q) /CSM_Contig/Conti... 42 8e-04
Contig-U12803-1 (Contig-U12803-1Q) /CSM_Contig/Conti... 42 8e-04

>Contig-U14237-1 (Contig-U14237-1Q) /CSM_Contig/Contig-U14237-1Q.Seq.d
Length = 670

Score = 632 bits (319), Expect = 0.0
Identities = 328/328 (100%)
Strand = Plus / Plus


Query: 343 gacaacaactaattttgaagatattaaaaaactatcaactgaatcaattgctgatagatt 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gacaacaactaattttgaagatattaaaaaactatcaactgaatcaattgctgatagatt 402


Query: 403 atctagattcattagattcttttgtacaaaaactaaaagagagtatagtattgatgttgc 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 atctagattcattagattcttttgtacaaaaactaaaagagagtatagtattgatgttgc 462


Query: 463 aaaattaatgataccatttgtggttttatcattggttgaggagatcaatacattgaaatt 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 aaaattaatgataccatttgtggttttatcattggttgaggagatcaatacattgaaatt 522


Query: 523 aataaaaattcaaacgaacctccaaaagatcaaatcattgatagtagtgaaactatgaac 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 aataaaaattcaaacgaacctccaaaagatcaaatcattgatagtagtgaaactatgaac 582


Query: 583 caaataataatacttctcaagaaaatanatttaaaaaatcttatattttcgatgacattt 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 caaataataatacttctcaagaaaatanatttaaaaaatcttatattttcgatgacattt 642


Query: 643 caccaatcttaaaaacnagnaacaaaaa 670
||||||||||||||||||||||||||||
Sbjct: 643 caccaatcttaaaaacnagnaacaaaaa 670


Score = 585 bits (295), Expect = e-167
Identities = 295/295 (100%)
Strand = Plus / Plus


Query: 11 tttaattcagaaccaatatttcataatgaaatgctaaatagggattgtttacaattgtca 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 tttaattcagaaccaatatttcataatgaaatgctaaatagggattgtttacaattgtca 70


Query: 71 caagattataatttaattagtcaaattaaatcattcaataattcatcatcatcttattca 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 caagattataatttaattagtcaaattaaatcattcaataattcatcatcatcttattca 130


Query: 131 ttcgatagtttttcatcaattaataaaagtaatacaaccagtccaactacaacaagttta 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 ttcgatagtttttcatcaattaataaaagtaatacaaccagtccaactacaacaagttta 190


Query: 191 ttagatcaatcttcaaattcaaacccttcaattatattggatacaccattacaaccatta 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 ttagatcaatcttcaaattcaaacccttcaattatattggatacaccattacaaccatta 250


Query: 251 aatgcatcaccaatattaagtgattatgatagtaataatagtaatagtaatacaa 305
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 aatgcatcaccaatattaagtgattatgatagtaataatagtaatagtaatacaa 305


>Contig-U14532-1 (Contig-U14532-1Q) /CSM_Contig/Contig-U14532-1Q.Seq.d
Length = 587

Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus


Query: 279 atagtaataatagtaatagtaata 302
||||||||||||||||||||||||
Sbjct: 157 atagtaataatagtaatagtaata 180


Score = 38.2 bits (19), Expect = 0.012
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 286 taatagtaatagtaataca 304
|||||||||||||||||||
Sbjct: 263 taatagtaatagtaataca 281


>Contig-U12521-1 (Contig-U12521-1Q) /CSM_Contig/Contig-U12521-1Q.Seq.d
Length = 1189

Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus


Query: 279 atagtaataatagtaatagtaata 302
||||||||||||||||||||||||
Sbjct: 209 atagtaataatagtaatagtaata 232


Score = 36.2 bits (18), Expect = 0.047
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 279 atagtaataatagtaata 296
||||||||||||||||||
Sbjct: 200 atagtaataatagtaata 217


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,677
Number of Sequences: 6905
Number of extensions: 18677
Number of successful extensions: 2872
Number of sequences better than 10.0: 554
length of query: 670
length of database: 5,674,871
effective HSP length: 16
effective length of query: 654
effective length of database: 5,564,391
effective search space: 3639111714
effective search space used: 3639111714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.20
Homology vs DNA
Query= Contig-U14237-1 (Contig-U14237-1Q) /CSM_Contig/Contig-U14237-1Q.Seq.d
(670 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ377137) Dictyostelium discoideum cDNA clone:ddc22a21, 3' ... 632 0.0 2
(AY392432) Dictyostelium discoideum DNA helicase gene, compl... 155 2e-49 2
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 40 9e-04 8
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 40 0.009 11
(AL844509) Plasmodium falciparum chromosome 13. 40 0.012 13
(AE014825) Plasmodium falciparum 3D7 chromosome 14 section 1... 38 0.018 2
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 40 0.021 12
(CR382401) Plasmodium falciparum chromosome 6, complete sequ... 34 0.021 8
(AY815008) Schistosoma japonicum SJCHGC09165 protein mRNA, c... 52 0.027 1
(EI091985) hhe0007ba10.g1 hhe Oryza ridleyi genomic clone hh... 52 0.027 1
(CV698060) SJS_035_69.T3 SJS Schistosoma japonicum cDNA, mRN... 52 0.027 1
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 42 0.028 10
(AE014817) Plasmodium falciparum 3D7 chromosome 14 section 2... 40 0.045 9
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 44 0.046 12
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 40 0.052 9
(EK420976) 1095515506416 Global-Ocean-Sampling_GS-31-01-01-1... 46 0.082 2
(EF449621) Achaearanea trapezoidalis 16S ribosomal RNA gene,... 34 0.087 2
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 38 0.10 10
(AL035476) Plasmodium falciparum MAL4P3. 40 0.10 9
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 48 0.10 8
(AY502546) HIV-1 isolate woman_116 clone 10 from Central Afr... 50 0.11 1
(AY502311) HIV-1 isolate woman_116 clone 5 from Central Afri... 50 0.11 1
(AY502192) HIV-1 isolate woman_116 clone 8 from Central Afri... 50 0.11 1
(AY502180) HIV-1 isolate woman_116 clone 13 from Central Afr... 50 0.11 1
(AC135567) Mus musculus BAC clone RP23-312I24 from chromosom... 50 0.11 1
(AC133967) Mus musculus BAC clone RP23-14J5 from chromosome ... 50 0.11 1
(AY159038) Dictyostelium discoideum LvsB (lvsB) gene, comple... 50 0.11 1
(EJ765534) 1092963210102 Global-Ocean-Sampling_GS-30-02-01-1... 50 0.11 1
(EJ386010) 1092963812635 Global-Ocean-Sampling_GS-28-01-01-1... 50 0.11 1
(DX322936) OR_ABa0241N06.f OR_ABa Oryza ridleyi genomic clon... 50 0.11 1
(AE014816) Plasmodium falciparum 3D7 chromosome 14 section 1... 40 0.12 9
(AC182664) Populus trichocarpa clone Pop1-17P12, WORKING DRA... 40 0.12 4
(AE014831) Plasmodium falciparum 3D7 chromosome 10 section 3... 34 0.12 9
(AE014846) Plasmodium falciparum 3D7 chromosome 12, section ... 40 0.12 8
(AC201235) Strongylocentrotus purpuratus clone R3-15J8, WORK... 48 0.16 2
(AC170583) Medicago truncatula clone mth2-19b5, complete seq... 46 0.16 5
(AC208750) Pan troglodytes clone CH251-329P20, WORKING DRAFT... 46 0.17 3
(CN667184) A0850C04-5 NIA Mouse E13.5 whole embryo cDNA libr... 40 0.18 3
(AC203547) Medicago truncatula clone mth2-45b22, WORKING DRA... 46 0.19 5
(CP000825) Prochlorococcus marinus str. MIT 9215, complete g... 34 0.20 16
(CU041393) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.21 3
(BX248504) Zebrafish DNA sequence from clone CH211-72K22 in ... 40 0.22 5
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595... 36 0.23 8
(EL502476) C07_PFLAB1-L-PLATE19B.AB1 Blood stage Plasmodium ... 38 0.23 2
(AC115607) Dictyostelium discoideum chromosome 2 map 4559693... 48 0.23 4
(AC124381) Mus musculus BAC clone RP24-406E24 from chromosom... 34 0.24 2
(AE014840) Plasmodium falciparum 3D7 chromosome 11 section 5... 40 0.26 7
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 32 0.27 12
(EK425894) 1095516019412 Global-Ocean-Sampling_GS-31-01-01-1... 46 0.28 2
(AC105044) Homo sapiens chromosome 8 clone CTD-3089F7 map 8,... 48 0.29 2
(AC004710) Plasmodium falciparum chromosome 12, *** SEQUENCI... 46 0.29 4
(AY232271) Dictyostelium discoideum putative protein Roco9 (... 40 0.31 4
(AC182671) Populus trichocarpa clone Pop1-24F1, complete seq... 40 0.31 5
(AC113004) Mus musculus chromosome 5, clone RP23-250M13, com... 40 0.35 4
(AM486258) Vitis vinifera contig VV78X056040.15, whole genom... 42 0.35 3
(Z83745) Human DNA sequence from clone RP3-453A3 on chromoso... 46 0.37 3
(AC130594) Rattus norvegicus clone CH230-432E7, *** SEQUENCI... 42 0.38 4
(AC164074) Mus musculus chromosome 5, clone RP23-69E3, compl... 40 0.40 4
(AC214096) Populus trichocarpa clone POP019-C06, complete se... 48 0.40 5
(AY232270) Dictyostelium discoideum putative protein Roco8 (... 48 0.40 2
(CU019664) Zebrafish DNA sequence from clone DKEY-90A17 in l... 48 0.43 1
(CR388388) Zebrafish DNA sequence from clone DKEY-282G23 in ... 48 0.43 1
(CR383669) Zebrafish DNA sequence from clone DKEY-25O1 in li... 48 0.43 1
(BX950856) Zebrafish DNA sequence from clone DKEY-205L20 in ... 48 0.43 1
(BX510919) Zebrafish DNA sequence from clone DKEY-164K19 in ... 48 0.43 1
(AC193910) Gallus gallus BAC clone CH261-118B11 from chromos... 48 0.43 1
(AC145195) Danio rerio clone CH211-160M5, complete sequence. 48 0.43 1
(EU578038) HIV-1 isolate 6064.25 from USA vpu protein (vpu) ... 48 0.43 1
(EU007909) Mus musculus complement component 3a receptor 1 (... 48 0.43 1
(AL844195) Mouse DNA sequence from clone RP23-144K11 on chro... 48 0.43 1
(AL669835) Mouse DNA sequence from clone RP23-151P20 on chro... 48 0.43 1
(AC162856) Mus musculus chromosome 8, clone RP23-51I4, compl... 48 0.43 1
(AC160027) Mus musculus 10 BAC RP23-192N23 (Roswell Park Can... 48 0.43 1
(AC154240) Mus musculus BAC clone RP24-170E23 from chromosom... 48 0.43 1
(AC145163) Mus musculus BAC clone RP24-238C5 from chromosome... 48 0.43 1
(AC132189) Mus musculus chromosome 12, clone RP24-95M20, com... 48 0.43 1
(AC130661) Mus musculus chromosome 12, clone RP23-337K17, co... 48 0.43 1
(AC124761) Mus musculus BAC clone RP23-142G18 from 6, comple... 48 0.43 1
(AC124337) Mus musculus chromosome 6, clone RP24-199P17, com... 48 0.43 1
(AC123948) Mus musculus BAC clone RP23-105C3 from chromosome... 48 0.43 1
(AC123874) Mus musculus BAC clone RP23-265M17 from 6, comple... 48 0.43 1
(AC116675) Mus musculus chromosome 8, clone RP23-16M20, comp... 48 0.43 1
(AM425625) Vitis vinifera, whole genome shotgun sequence, co... 48 0.43 1
(AC217571) Populus trichocarpa clone POP067-P04, complete se... 48 0.43 1
(AC183428) Populus trichocarpa clone Pop1-48N3, complete seq... 48 0.43 1
(AC183427) Populus trichocarpa clone Pop1-48H6, complete seq... 48 0.43 1
(AC182657) Populus trichocarpa clone Pop1-122I6, complete se... 48 0.43 1
(AC175828) Medicago truncatula chromosome 2 BAC clone mte1-5... 48 0.43 1
(AC150891) Medicago truncatula chromosome 2 clone mth2-76a9,... 48 0.43 1
(CR382398) Plasmodium falciparum chromosome 6, complete sequ... 48 0.43 1
(AM910993) Plasmodium knowlesi strain H chromosome 11, compl... 48 0.43 1
(AL929358) Plasmodium falciparum strain 3D7, chromosome 9; s... 48 0.43 1
(AL034559) Plasmodium falciparum MAL3P7. 48 0.43 1
(AF081584) Dictyostelium discoideum developmental protein Gb... 48 0.43 1
(AE001421) Plasmodium falciparum 3D7 chromosome 2 section 58... 48 0.43 1
(AC117082) Dictyostelium discoideum chromosome 2 map complem... 48 0.43 1
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 48 0.43 1
(AB231868) Nematostella vectensis genes for zinc finger prot... 48 0.43 1
(AB231864) Schistosoma mansoni gene for zinc finger protein ... 48 0.43 1
(AC110921) Homo sapiens chromosome 17, clone CTD-2653B5, com... 48 0.43 1

>(BJ377137) Dictyostelium discoideum cDNA clone:ddc22a21, 3' end,
single read.
Length = 661

Score = 632 bits (319), Expect(2) = 0.0
Identities = 328/328 (100%)
Strand = Plus / Minus


Query: 343 gacaacaactaattttgaagatattaaaaaactatcaactgaatcaattgctgatagatt 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gacaacaactaattttgaagatattaaaaaactatcaactgaatcaattgctgatagatt 270


Query: 403 atctagattcattagattcttttgtacaaaaactaaaagagagtatagtattgatgttgc 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 atctagattcattagattcttttgtacaaaaactaaaagagagtatagtattgatgttgc 210


Query: 463 aaaattaatgataccatttgtggttttatcattggttgaggagatcaatacattgaaatt 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 aaaattaatgataccatttgtggttttatcattggttgaggagatcaatacattgaaatt 150


Query: 523 aataaaaattcaaacgaacctccaaaagatcaaatcattgatagtagtgaaactatgaac 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 aataaaaattcaaacgaacctccaaaagatcaaatcattgatagtagtgaaactatgaac 90


Query: 583 caaataataatacttctcaagaaaatanatttaaaaaatcttatattttcgatgacattt 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 caaataataatacttctcaagaaaatanatttaaaaaatcttatattttcgatgacattt 30


Query: 643 caccaatcttaaaaacnagnaacaaaaa 670
||||||||||||||||||||||||||||
Sbjct: 29 caccaatcttaaaaacnagnaacaaaaa 2

Score = 585 bits (295), Expect(2) = 0.0
Identities = 295/295 (100%)
Strand = Plus / Minus


Query: 11 tttaattcagaaccaatatttcataatgaaatgctaaatagggattgtttacaattgtca 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tttaattcagaaccaatatttcataatgaaatgctaaatagggattgtttacaattgtca 602


Query: 71 caagattataatttaattagtcaaattaaatcattcaataattcatcatcatcttattca 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 caagattataatttaattagtcaaattaaatcattcaataattcatcatcatcttattca 542


Query: 131 ttcgatagtttttcatcaattaataaaagtaatacaaccagtccaactacaacaagttta 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttcgatagtttttcatcaattaataaaagtaatacaaccagtccaactacaacaagttta 482


Query: 191 ttagatcaatcttcaaattcaaacccttcaattatattggatacaccattacaaccatta 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttagatcaatcttcaaattcaaacccttcaattatattggatacaccattacaaccatta 422


Query: 251 aatgcatcaccaatattaagtgattatgatagtaataatagtaatagtaatacaa 305
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aatgcatcaccaatattaagtgattatgatagtaataatagtaatagtaatacaa 367

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 829,174,955
Number of extensions: 54225136
Number of successful extensions: 4589491
Number of sequences better than 10.0: 748
Length of query: 670
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 646
Effective length of database: 97,308,875,965
Effective search space: 62861533873390
Effective search space used: 62861533873390
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.10
Homology vs Protein
Query= Contig-U14237-1 (Contig-U14237-1Q) /CSM_Contig/Contig-U14237-1Q.Seq.d
(670 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

T16060(T16060)hypothetical protein F13H8.5 - Caenorhabditis eleg... 33 5.9

>T16060(T16060)hypothetical protein F13H8.5 - Caenorhabditis elegans
Length = 981

Score = 33.5 bits (75), Expect = 5.9
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = -2

Query: 546 WRFV*IFINFNVLISSTNDKTTNGIINFATSILYSLLVFVQKNL 415
W+FV IFI N L + N++TT G F S L+S L +Q N+
Sbjct: 182 WKFVNIFIGHNDLCNICNNETTFGPETFGKS-LHSALTIIQTNV 224

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 649,210,018
Number of extensions: 8706486
Number of successful extensions: 20994
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20993
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 1,051,180,864
Length adjustment: 124
Effective length of query: 99
Effective length of database: 649,847,548
Effective search space: 64334907252
Effective search space used: 64334907252
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.75 gvh: 0.44 alm: 0.30 top: 0.40 tms: 0.07 mit: 0.20 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.03 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: endoplasmic reticulum
20.0 %: cytoplasmic
16.0 %: mitochondrial
16.0 %: nuclear
8.0 %: Golgi
8.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for Contig-U14237-1 is end

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0