Contig-U14237-1 |
Contig ID |
Contig-U14237-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
no gap |
Contig length |
670 |
Chromosome number (1..6, M) |
3 |
Chromosome length |
6358359 |
Start point |
291005 |
End point |
291666 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
1 |
Number of EST |
1 |
Link to clone list |
U14237 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.12.20 |
Homology vs DNA |
Query= Contig-U14237-1 (Contig-U14237-1Q) /CSM_Contig/Contig-U14237-1Q.Seq.d (670 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ377137) Dictyostelium discoideum cDNA clone:ddc22a21, 3' ... 632 0.0 2 (AY392432) Dictyostelium discoideum DNA helicase gene, compl... 155 2e-49 2 (AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 40 9e-04 8 (AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 40 0.009 11 (AL844509) Plasmodium falciparum chromosome 13. 40 0.012 13 (AE014825) Plasmodium falciparum 3D7 chromosome 14 section 1... 38 0.018 2 (AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 40 0.021 12 (CR382401) Plasmodium falciparum chromosome 6, complete sequ... 34 0.021 8 (AY815008) Schistosoma japonicum SJCHGC09165 protein mRNA, c... 52 0.027 1 (EI091985) hhe0007ba10.g1 hhe Oryza ridleyi genomic clone hh... 52 0.027 1 (CV698060) SJS_035_69.T3 SJS Schistosoma japonicum cDNA, mRN... 52 0.027 1 (AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 42 0.028 10 (AE014817) Plasmodium falciparum 3D7 chromosome 14 section 2... 40 0.045 9 (AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 44 0.046 12 (AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 40 0.052 9 (EK420976) 1095515506416 Global-Ocean-Sampling_GS-31-01-01-1... 46 0.082 2 (EF449621) Achaearanea trapezoidalis 16S ribosomal RNA gene,... 34 0.087 2 (AC116960) Dictyostelium discoideum chromosome 2 map complem... 38 0.10 10 (AL035476) Plasmodium falciparum MAL4P3. 40 0.10 9 (AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 48 0.10 8 (AY502546) HIV-1 isolate woman_116 clone 10 from Central Afr... 50 0.11 1 (AY502311) HIV-1 isolate woman_116 clone 5 from Central Afri... 50 0.11 1 (AY502192) HIV-1 isolate woman_116 clone 8 from Central Afri... 50 0.11 1 (AY502180) HIV-1 isolate woman_116 clone 13 from Central Afr... 50 0.11 1 (AC135567) Mus musculus BAC clone RP23-312I24 from chromosom... 50 0.11 1 (AC133967) Mus musculus BAC clone RP23-14J5 from chromosome ... 50 0.11 1 (AY159038) Dictyostelium discoideum LvsB (lvsB) gene, comple... 50 0.11 1 (EJ765534) 1092963210102 Global-Ocean-Sampling_GS-30-02-01-1... 50 0.11 1 (EJ386010) 1092963812635 Global-Ocean-Sampling_GS-28-01-01-1... 50 0.11 1 (DX322936) OR_ABa0241N06.f OR_ABa Oryza ridleyi genomic clon... 50 0.11 1 (AE014816) Plasmodium falciparum 3D7 chromosome 14 section 1... 40 0.12 9 (AC182664) Populus trichocarpa clone Pop1-17P12, WORKING DRA... 40 0.12 4 (AE014831) Plasmodium falciparum 3D7 chromosome 10 section 3... 34 0.12 9 (AE014846) Plasmodium falciparum 3D7 chromosome 12, section ... 40 0.12 8 (AC201235) Strongylocentrotus purpuratus clone R3-15J8, WORK... 48 0.16 2 (AC170583) Medicago truncatula clone mth2-19b5, complete seq... 46 0.16 5 (AC208750) Pan troglodytes clone CH251-329P20, WORKING DRAFT... 46 0.17 3 (CN667184) A0850C04-5 NIA Mouse E13.5 whole embryo cDNA libr... 40 0.18 3 (AC203547) Medicago truncatula clone mth2-45b22, WORKING DRA... 46 0.19 5 (CP000825) Prochlorococcus marinus str. MIT 9215, complete g... 34 0.20 16 (CU041393) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.21 3 (BX248504) Zebrafish DNA sequence from clone CH211-72K22 in ... 40 0.22 5 (AC115592) Dictyostelium discoideum chromosome 2 map 1-12595... 36 0.23 8 (EL502476) C07_PFLAB1-L-PLATE19B.AB1 Blood stage Plasmodium ... 38 0.23 2 (AC115607) Dictyostelium discoideum chromosome 2 map 4559693... 48 0.23 4 (AC124381) Mus musculus BAC clone RP24-406E24 from chromosom... 34 0.24 2 (AE014840) Plasmodium falciparum 3D7 chromosome 11 section 5... 40 0.26 7 (AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 32 0.27 12 (EK425894) 1095516019412 Global-Ocean-Sampling_GS-31-01-01-1... 46 0.28 2 (AC105044) Homo sapiens chromosome 8 clone CTD-3089F7 map 8,... 48 0.29 2 (AC004710) Plasmodium falciparum chromosome 12, *** SEQUENCI... 46 0.29 4 (AY232271) Dictyostelium discoideum putative protein Roco9 (... 40 0.31 4 (AC182671) Populus trichocarpa clone Pop1-24F1, complete seq... 40 0.31 5 (AC113004) Mus musculus chromosome 5, clone RP23-250M13, com... 40 0.35 4 (AM486258) Vitis vinifera contig VV78X056040.15, whole genom... 42 0.35 3 (Z83745) Human DNA sequence from clone RP3-453A3 on chromoso... 46 0.37 3 (AC130594) Rattus norvegicus clone CH230-432E7, *** SEQUENCI... 42 0.38 4 (AC164074) Mus musculus chromosome 5, clone RP23-69E3, compl... 40 0.40 4 (AC214096) Populus trichocarpa clone POP019-C06, complete se... 48 0.40 5 (AY232270) Dictyostelium discoideum putative protein Roco8 (... 48 0.40 2 (CU019664) Zebrafish DNA sequence from clone DKEY-90A17 in l... 48 0.43 1 (CR388388) Zebrafish DNA sequence from clone DKEY-282G23 in ... 48 0.43 1 (CR383669) Zebrafish DNA sequence from clone DKEY-25O1 in li... 48 0.43 1 (BX950856) Zebrafish DNA sequence from clone DKEY-205L20 in ... 48 0.43 1 (BX510919) Zebrafish DNA sequence from clone DKEY-164K19 in ... 48 0.43 1 (AC193910) Gallus gallus BAC clone CH261-118B11 from chromos... 48 0.43 1 (AC145195) Danio rerio clone CH211-160M5, complete sequence. 48 0.43 1 (EU578038) HIV-1 isolate 6064.25 from USA vpu protein (vpu) ... 48 0.43 1 (EU007909) Mus musculus complement component 3a receptor 1 (... 48 0.43 1 (AL844195) Mouse DNA sequence from clone RP23-144K11 on chro... 48 0.43 1 (AL669835) Mouse DNA sequence from clone RP23-151P20 on chro... 48 0.43 1 (AC162856) Mus musculus chromosome 8, clone RP23-51I4, compl... 48 0.43 1 (AC160027) Mus musculus 10 BAC RP23-192N23 (Roswell Park Can... 48 0.43 1 (AC154240) Mus musculus BAC clone RP24-170E23 from chromosom... 48 0.43 1 (AC145163) Mus musculus BAC clone RP24-238C5 from chromosome... 48 0.43 1 (AC132189) Mus musculus chromosome 12, clone RP24-95M20, com... 48 0.43 1 (AC130661) Mus musculus chromosome 12, clone RP23-337K17, co... 48 0.43 1 (AC124761) Mus musculus BAC clone RP23-142G18 from 6, comple... 48 0.43 1 (AC124337) Mus musculus chromosome 6, clone RP24-199P17, com... 48 0.43 1 (AC123948) Mus musculus BAC clone RP23-105C3 from chromosome... 48 0.43 1 (AC123874) Mus musculus BAC clone RP23-265M17 from 6, comple... 48 0.43 1 (AC116675) Mus musculus chromosome 8, clone RP23-16M20, comp... 48 0.43 1 (AM425625) Vitis vinifera, whole genome shotgun sequence, co... 48 0.43 1 (AC217571) Populus trichocarpa clone POP067-P04, complete se... 48 0.43 1 (AC183428) Populus trichocarpa clone Pop1-48N3, complete seq... 48 0.43 1 (AC183427) Populus trichocarpa clone Pop1-48H6, complete seq... 48 0.43 1 (AC182657) Populus trichocarpa clone Pop1-122I6, complete se... 48 0.43 1 (AC175828) Medicago truncatula chromosome 2 BAC clone mte1-5... 48 0.43 1 (AC150891) Medicago truncatula chromosome 2 clone mth2-76a9,... 48 0.43 1 (CR382398) Plasmodium falciparum chromosome 6, complete sequ... 48 0.43 1 (AM910993) Plasmodium knowlesi strain H chromosome 11, compl... 48 0.43 1 (AL929358) Plasmodium falciparum strain 3D7, chromosome 9; s... 48 0.43 1 (AL034559) Plasmodium falciparum MAL3P7. 48 0.43 1 (AF081584) Dictyostelium discoideum developmental protein Gb... 48 0.43 1 (AE001421) Plasmodium falciparum 3D7 chromosome 2 section 58... 48 0.43 1 (AC117082) Dictyostelium discoideum chromosome 2 map complem... 48 0.43 1 (AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 48 0.43 1 (AB231868) Nematostella vectensis genes for zinc finger prot... 48 0.43 1 (AB231864) Schistosoma mansoni gene for zinc finger protein ... 48 0.43 1 (AC110921) Homo sapiens chromosome 17, clone CTD-2653B5, com... 48 0.43 1
>(BJ377137) Dictyostelium discoideum cDNA clone:ddc22a21, 3' end, single read. Length = 661
Score = 632 bits (319), Expect(2) = 0.0 Identities = 328/328 (100%) Strand = Plus / Minus
Query: 343 gacaacaactaattttgaagatattaaaaaactatcaactgaatcaattgctgatagatt 402 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 329 gacaacaactaattttgaagatattaaaaaactatcaactgaatcaattgctgatagatt 270
Query: 403 atctagattcattagattcttttgtacaaaaactaaaagagagtatagtattgatgttgc 462 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 269 atctagattcattagattcttttgtacaaaaactaaaagagagtatagtattgatgttgc 210
Query: 463 aaaattaatgataccatttgtggttttatcattggttgaggagatcaatacattgaaatt 522 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 209 aaaattaatgataccatttgtggttttatcattggttgaggagatcaatacattgaaatt 150
Query: 523 aataaaaattcaaacgaacctccaaaagatcaaatcattgatagtagtgaaactatgaac 582 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 149 aataaaaattcaaacgaacctccaaaagatcaaatcattgatagtagtgaaactatgaac 90
Query: 583 caaataataatacttctcaagaaaatanatttaaaaaatcttatattttcgatgacattt 642 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 89 caaataataatacttctcaagaaaatanatttaaaaaatcttatattttcgatgacattt 30
Query: 643 caccaatcttaaaaacnagnaacaaaaa 670 |||||||||||||||||||||||||||| Sbjct: 29 caccaatcttaaaaacnagnaacaaaaa 2
Score = 585 bits (295), Expect(2) = 0.0 Identities = 295/295 (100%) Strand = Plus / Minus
Query: 11 tttaattcagaaccaatatttcataatgaaatgctaaatagggattgtttacaattgtca 70 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 661 tttaattcagaaccaatatttcataatgaaatgctaaatagggattgtttacaattgtca 602
Query: 71 caagattataatttaattagtcaaattaaatcattcaataattcatcatcatcttattca 130 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 601 caagattataatttaattagtcaaattaaatcattcaataattcatcatcatcttattca 542
Query: 131 ttcgatagtttttcatcaattaataaaagtaatacaaccagtccaactacaacaagttta 190 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 ttcgatagtttttcatcaattaataaaagtaatacaaccagtccaactacaacaagttta 482
Query: 191 ttagatcaatcttcaaattcaaacccttcaattatattggatacaccattacaaccatta 250 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 ttagatcaatcttcaaattcaaacccttcaattatattggatacaccattacaaccatta 422
Query: 251 aatgcatcaccaatattaagtgattatgatagtaataatagtaatagtaatacaa 305 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 aatgcatcaccaatattaagtgattatgatagtaataatagtaatagtaatacaa 367
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 829,174,955 Number of extensions: 54225136 Number of successful extensions: 4589491 Number of sequences better than 10.0: 748 Length of query: 670 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 646 Effective length of database: 97,308,875,965 Effective search space: 62861533873390 Effective search space used: 62861533873390 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7.10 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
1 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |