>Contig-U14236-1 (Contig-U14236-1Q) /CSM_Contig/Contig-U14236-1Q.Seq.d
NNNNNNNNNNGAAAATCAAAAATTAAAAAGTAACATTACTCTATTATATG
GTGAAATTTCAATTTTAGAAAAACAATTAAATGGTAACATTACTCAATTA
AATGGTGCAATATCAATTTTAGAAAAACAATTAAATGGTAACATTACCTT
ATTAAATGAAGAAATTTCATCATTGAACTCAATAATTACTGATTATGAAA
GAAATAATACAATTTTGACTCATCAAGCAGAGCTTGATTCATTTGAATTA
AAATCATATGATCAATGTATTATTGATAGAAATAGATACAAAATGGGATC
AGAAAAATCACCATTTAATTTAAAACAATACCCATCGTTGGTTAAAATTG
ATGATGTTTCACAATGTCCAAAATATAAATGCTTAAAAAGAAAATCATTA
AATGAGTGGACTATTGGACTAAACATCCCAGCTTTTTGTAGAGAAAGTCG
ATATGATTGTTCGTTGTGTTACAAATACATAGAATGCAGTTTTTCTGATG
AATTTTAAACAAATTTAAGCGCACTTTTTGTAATTTAAAATATTTTTATA
TGGGAGCCCATATAAAATTAATATGTATAATTTTCAAATTTGAAAAATGC
TAAAACTTGAATGTTTTTCACGCATATATTTCTCAATCACTCCAATTAAA
CCATAGTTTT

est1=CHA160Z,1,651

XXXENQKLKSNITLLYGEISILEKQLNGNITQLNGAISILEKQLNGNITLLNEEISSLNS
IITDYERNNTILTHQAELDSFELKSYDQCIIDRNRYKMGSEKSPFNLKQYPSLVKIDDVS
QCPKYKCLKRKSLNEWTIGLNIPAFCRESRYDCSLCYKYIECSFSDEF*tnlsalfvi*n
ifiwepi*n*yv*fsnlknakt*mffthiflnhsn*tiv

Frame A:
xxxxkskikk*hysiiw*nfnfrktikw*hysikwcninfrktikw*hylik*rnfiiel
nny*l*kk*ynfdsssra*fi*ikii*smyy**k*iqngirkiti*fktipivg*n**cf
tmski*mlkkkiik*vdywtkhpsfl*rksi*lfvvlqihrmqff**ilnkfkrtfcnlk
yfymgahikliciifkfekc*nlnvfhayisqslqlnhsf


Frame B:
XXXENQKLKSNITLLYGEISILEKQLNGNITQLNGAISILEKQLNGNITLLNEEISSLNS
IITDYERNNTILTHQAELDSFELKSYDQCIIDRNRYKMGSEKSPFNLKQYPSLVKIDDVS
QCPKYKCLKRKSLNEWTIGLNIPAFCRESRYDCSLCYKYIECSFSDEF*tnlsalfvi*n
ifiwepi*n*yv*fsnlknakt*mffthiflnhsn*tiv


Frame C:
xxxkikn*kvtllyymvkfqf*knn*mvtlln*mvqyqf*knn*mvtlpy*mkkfhh*tq
*llimkeiiqf*likqslihln*nhminvllieidtkwdqknhhli*nnthrwlklmmfh
nvqnina*kenh*msglld*tsqlfvekvdmivrcvtnt*navflmnfkqi*ahfl*fki
flygspykinmynfqi*kmlklecfsriyfsitpikp*f

Query= Contig-U14236-1 (Contig-U14236-1Q)
/CSM_Contig/Contig-U14236-1Q.Seq.d
         (660 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U14236-1 (Contig-U14236-1Q) /CSM_Contig/Conti...  1289  0.0
Contig-U05308-1 (Contig-U05308-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U11539-1 (Contig-U11539-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U09610-1 (Contig-U09610-1Q) /CSM_Contig/Conti...    36  0.046
Contig-U04852-1 (Contig-U04852-1Q) /CSM_Contig/Conti...    36  0.046
Contig-U14394-1 (Contig-U14394-1Q) /CSM_Contig/Conti...    34  0.18
Contig-U14322-1 (Contig-U14322-1Q) /CSM_Contig/Conti...    34  0.18
Contig-U12536-1 (Contig-U12536-1Q) /CSM_Contig/Conti...    34  0.18
Contig-U11481-1 (Contig-U11481-1Q) /CSM_Contig/Conti...    34  0.18

>Contig-U14236-1 (Contig-U14236-1Q) /CSM_Contig/Contig-U14236-1Q.Seq.d
          Length = 660

 Score = 1289 bits (650), Expect = 0.0
 Identities = 650/650 (100%)
 Strand = Plus / Plus

                                                                       
Query: 11  gaaaatcaaaaattaaaaagtaacattactctattatatggtgaaatttcaattttagaa 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11  gaaaatcaaaaattaaaaagtaacattactctattatatggtgaaatttcaattttagaa 70

                                                                       
Query: 71  aaacaattaaatggtaacattactcaattaaatggtgcaatatcaattttagaaaaacaa 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71  aaacaattaaatggtaacattactcaattaaatggtgcaatatcaattttagaaaaacaa 130

                                                                       
Query: 131 ttaaatggtaacattaccttattaaatgaagaaatttcatcattgaactcaataattact 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 ttaaatggtaacattaccttattaaatgaagaaatttcatcattgaactcaataattact 190

                                                                       
Query: 191 gattatgaaagaaataatacaattttgactcatcaagcagagcttgattcatttgaatta 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 gattatgaaagaaataatacaattttgactcatcaagcagagcttgattcatttgaatta 250

                                                                       
Query: 251 aaatcatatgatcaatgtattattgatagaaatagatacaaaatgggatcagaaaaatca 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 aaatcatatgatcaatgtattattgatagaaatagatacaaaatgggatcagaaaaatca 310

                                                                       
Query: 311 ccatttaatttaaaacaatacccatcgttggttaaaattgatgatgtttcacaatgtcca 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ccatttaatttaaaacaatacccatcgttggttaaaattgatgatgtttcacaatgtcca 370

                                                                       
Query: 371 aaatataaatgcttaaaaagaaaatcattaaatgagtggactattggactaaacatccca 430
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 aaatataaatgcttaaaaagaaaatcattaaatgagtggactattggactaaacatccca 430

                                                                       
Query: 431 gctttttgtagagaaagtcgatatgattgttcgttgtgttacaaatacatagaatgcagt 490
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gctttttgtagagaaagtcgatatgattgttcgttgtgttacaaatacatagaatgcagt 490

                                                                       
Query: 491 ttttctgatgaattttaaacaaatttaagcgcactttttgtaatttaaaatatttttata 550
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ttttctgatgaattttaaacaaatttaagcgcactttttgtaatttaaaatatttttata 550

                                                                       
Query: 551 tgggagcccatataaaattaatatgtataattttcaaatttgaaaaatgctaaaacttga 610
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tgggagcccatataaaattaatatgtataattttcaaatttgaaaaatgctaaaacttga 610

                                                             
Query: 611 atgtttttcacgcatatatttctcaatcactccaattaaaccatagtttt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 atgtttttcacgcatatatttctcaatcactccaattaaaccatagtttt 660


 Score = 32.2 bits (16), Expect = 0.72
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 581 ttttcaaatttgaaaa 596
           ||||||||||||||||
Sbjct: 596 ttttcaaatttgaaaa 581


 Score = 32.2 bits (16), Expect = 0.72
 Identities = 22/24 (91%)
 Strand = Plus / Minus

                                   
Query: 544 ttttatatgggagcccatataaaa 567
           |||||||||||  |||||||||||
Sbjct: 567 ttttatatgggctcccatataaaa 544


>Contig-U05308-1 (Contig-U05308-1Q) /CSM_Contig/Contig-U05308-1Q.Seq.d
          Length = 575

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 47/54 (87%), Gaps = 1/54 (1%)
 Strand = Plus / Minus

                                                                 
Query: 522 cactttttgtaatttaaaatatttttatatgggagcccatataaaattaatatg 575
           ||||||||||||||||  |||||||| ||| |||   |||||||||||||||||
Sbjct: 485 cactttttgtaatttagtatattttt-tattggaattcatataaaattaatatg 433


>Contig-U11539-1 (Contig-U11539-1Q) /CSM_Contig/Contig-U11539-1Q.Seq.d
          Length = 1287

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 52  tgaaatttcaattttagaaa 71
           ||||||||||||||||||||
Sbjct: 169 tgaaatttcaattttagaaa 150


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,895
Number of Sequences: 6905
Number of extensions: 16895
Number of successful extensions: 1948
Number of sequences better than 10.0: 195
length of query: 660
length of database: 5,674,871
effective HSP length: 16
effective length of query: 644
effective length of database: 5,564,391
effective search space: 3583467804
effective search space used: 3583467804
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)

Query= Contig-U14236-1 (Contig-U14236-1Q) /CSM_Contig/Contig-U14236-1Q.Seq.d
         (660 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ377092) Dictyostelium discoideum cDNA clone:ddc22g15, 3' ...  1287   0.0    1
(AC116960) Dictyostelium discoideum chromosome 2 map complem...  1142   0.0    3
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen...    34   1e-05  12
(AP008209) Oryza sativa (japonica cultivar-group) genomic DN...    44   6e-05  17
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    32   2e-04  17
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    36   4e-04  15
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214...    36   7e-04  9
(CP000061) Aster yellows witches'-broom phytoplasma AYWB, co...    46   0.005  16
(AP010815) Solanum lycopersicum DNA, chromosome 8, clone: C0...    54   0.007  1
(AX345925) Sequence 996 from Patent WO0200928.                     40   0.007  6
(AM422018) Candidatus Phytoplasma australiense complete genome.    40   0.008  15
(AC229904) Pan troglodytes chromosome 7 clone CH251-267O9, *...    40   0.016  5
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    32   0.017  14
(CR450799) Zebrafish DNA sequence from clone DKEY-279C20 in ...    36   0.018  7
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    38   0.019  16
(BD061520) Genome DNA of symbiotic bacteria of aphid.              40   0.021  13
(AR409405) Sequence 1 from patent US 6632935.                      40   0.021  13
(BA000003) Buchnera aphidicola str. APS (Acyrthosiphon pisum...    40   0.021  13
(AU037971) Dictyostelium discoideum slug cDNA, clone SSH111.       36   0.021  2
(AC005505) Plasmodium falciparum chromosome 12 clone 3D7, **...    36   0.021  9
(U04966) Clostridium perfringens JIR4025 extracellular toxin...    52   0.026  1
(CP000246) Clostridium perfringens ATCC 13124, complete genome.    52   0.026  1
(BA000016) Clostridium perfringens str. 13 DNA, complete gen...    52   0.026  1
(AL356454) Human DNA sequence from clone RP11-458J24 on chro...    36   0.033  6
(AF303741) Chilo iridescent virus complete genome.                 34   0.042  8
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi...    34   0.045  14
(AL132862) Caenorhabditis elegans YAC Y73F8A.                      36   0.050  11
(AE017245) Mycoplasma synoviae 53, complete genome.                34   0.057  15
(AC223262) Bos taurus clone CH240-424L8, WORKING DRAFT SEQUE...    34   0.063  2
(AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1...    34   0.063  11
(AY653733) Acanthamoeba polyphaga mimivirus, complete genome.      36   0.063  17
(AC142323) Pan troglodytes BAC clone RP43-72N8 from chromoso...    40   0.077  5
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    32   0.080  13
(AC192443) Pan troglodytes BAC clone CH251-440J19 from chrom...    44   0.083  6
(AC153431) Medicago truncatula clone mth2-11h15, WORKING DRA...    36   0.084  7
(AP006628) Onion yellows phytoplasma OY-M DNA, complete genome.    46   0.099  16
(AC133138) Felis catus clone RP86-85C19, WORKING DRAFT SEQUE...    34   0.12   5
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)...    42   0.13   15
(CP000361) Arcobacter butzleri RM4018, complete genome.            38   0.13   17
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    30   0.14   12
(CU570706) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   0.14   6
(AC133137) Felis catus clone RP86-506G15, WORKING DRAFT SEQU...    34   0.15   5
(AL034558) Plasmodium falciparum MAL3P2.                           36   0.16   9
(AM412317) Clostridium botulinum A str. ATCC 3502 complete g...    36   0.17   19
(DQ396875) Scenedesmus obliquus strain UTEX 393 chloroplast,...    34   0.18   9
(AE014822) Plasmodium falciparum 3D7 chromosome 14 section 7...    34   0.19   11
(AC015268) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    44   0.20   2
(AC230132) Bos taurus clone CH240-521A12, WORKING DRAFT SEQU...    44   0.20   3
(AL139337) Human DNA sequence *** SEQUENCING CANCELLED *** f...    44   0.21   6
(AM607676) Entamoeba invadens IP1 GSS, clone inv082d01.q1k.        36   0.21   2
(AC150441) Medicago truncatula chromosome 2 BAC clone mth2-1...    36   0.22   7
(AC005504) Plasmodium falciparum chromosome 12, *** SEQUENCI...    34   0.22   8
(AY184995) Dictyostelium discoideum inositol 5-phosphatase 4...    44   0.22   2
(AC142315) Pan troglodytes BAC clone RP43-48P12 from chromos...    38   0.23   2
(CR940352) Theileria annulata genomic DNA chromosome 3.            34   0.23   17
(AL929354) Plasmodium falciparum strain 3D7, chromosome 5, s...    32   0.23   10
(AC005039) Homo sapiens BAC clone RP11-512E16 from 7, comple...    38   0.23   2
(EI449548) PV_GBa0048I12.f PV_GBa Phaseolus vulgaris genomic...    46   0.23   2
(AC142341) Pan troglodytes BAC clone RP43-43C1 from chromoso...    38   0.23   2
(AC189678) Trichinella spiralis BAC clone TS195-47H12 from c...    36   0.24   2
(CT009492) M.truncatula DNA sequence from clone MTH2-93A21 o...    34   0.25   6
(AX067442) Sequence 17 from Patent WO0078968.                      36   0.26   2
(AR408738) Sequence 17 from patent US 6632636.                     36   0.26   2
(AE017308) Mycoplasma mobile 163K complete genome.                 34   0.26   16
(BX511213) Zebrafish DNA sequence from clone CH211-232G2 in ...    34   0.28   7
(AE016826) Buchnera aphidicola str. Bp (Baizongia pistaciae)...    34   0.28   14
(EJ656036) 1092955006628 Global-Ocean-Sampling_GS-30-02-01-1...    36   0.29   3
(CZ972705) 175300 Tomato MboI BAC Library Solanum lycopersic...    38   0.30   2
(AC087422) Caenorhabditis briggsae cosmid CB033P12, complete...    34   0.32   6
(AL844506) Plasmodium falciparum chromosome  7.                    36   0.34   14
(AC172814) Bos taurus clone CH240-430C21, WORKING DRAFT SEQU...    40   0.35   6
(AL844521) Zebrafish DNA sequence from clone DKEY-155O15 in ...    34   0.37   8
(EJ430912) 1093015255122 Global-Ocean-Sampling_GS-28-01-01-1...    40   0.39   3
(EJ713483) 1092956093237 Global-Ocean-Sampling_GS-30-02-01-1...    36   0.40   3
(AC181826) Strongylocentrotus purpuratus clone R3-1023C3, WO...    48   0.40   1
(AC181736) Strongylocentrotus purpuratus clone R3-1037M16, W...    48   0.40   1
(AC177150) Strongylocentrotus purpuratus clone R3-4014P7, WO...    48   0.40   1
(ER928218) MUGQ_CH252P289D24Sp6_CP449_094 CHORI-252 Vervet M...    48   0.40   1
(AC154852) Mus musculus BAC clone RP23-33B19 from 16, comple...    40   0.40   6
(CU633437) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   0.41   6
(AL445563) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    38   0.41   8
(CR940353) Theileria annulata genomic DNA chromosome 4.            36   0.43   17
(AC010562) Drosophila melanogaster 3L BAC RP98-21K18 (Roswel...    38   0.48   7
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6...    36   0.49   11
(CU463020) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    36   0.49   5
(AE000783) Borrelia burgdorferi B31, complete genome.              36   0.52   15
(AC138308) Mus musculus BAC clone RP23-286G16 from 14, compl...    32   0.53   6
(CP000685) Flavobacterium johnsoniae UW101, complete genome.       46   0.55   16
(AE017244) Mycoplasma hyopneumoniae 7448, complete genome.         32   0.55   16
(AC091877) Homo sapiens chromosome 5 clone CTD-3061E14, comp...    40   0.55   7
(AC141324) Pan troglodytes BAC clone RP43-1G23 from chromoso...    40   0.58   5
(AM434452) Vitis vinifera contig VV78X202842.8, whole genome...    36   0.58   4
(BD428979) Method and nucleic acids for pharmacogenomic meth...    40   0.59   3
(AX348458) Sequence 153 from Patent WO0202806.                     40   0.59   3
(CU914254) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   0.61   4
(AL929357) Plasmodium falciparum strain 3D7, chromosome 9; s...    34   0.65   10
(CP000939) Clostridium botulinum B1 str. Okra, complete genome.    34   0.67   18
(CU210887) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   0.67   3
(AE014850) Plasmodium falciparum 3D7 chromosome 12, section ...    32   0.70   10
(CP000745) Methanococcus maripaludis C7, complete genome.          34   0.72   17

>(BJ377092) Dictyostelium discoideum cDNA clone:ddc22g15, 3' end,
           single read.
          Length = 651

 Score = 1287 bits (649), Expect = 0.0
 Identities = 649/649 (100%)
 Strand = Plus / Minus


Query: 12  aaaatcaaaaattaaaaagtaacattactctattatatggtgaaatttcaattttagaaa 71
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 aaaatcaaaaattaaaaagtaacattactctattatatggtgaaatttcaattttagaaa 591


Query: 72  aacaattaaatggtaacattactcaattaaatggtgcaatatcaattttagaaaaacaat 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 aacaattaaatggtaacattactcaattaaatggtgcaatatcaattttagaaaaacaat 531


Query: 132 taaatggtaacattaccttattaaatgaagaaatttcatcattgaactcaataattactg 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 taaatggtaacattaccttattaaatgaagaaatttcatcattgaactcaataattactg 471


Query: 192 attatgaaagaaataatacaattttgactcatcaagcagagcttgattcatttgaattaa 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 attatgaaagaaataatacaattttgactcatcaagcagagcttgattcatttgaattaa 411


Query: 252 aatcatatgatcaatgtattattgatagaaatagatacaaaatgggatcagaaaaatcac 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 aatcatatgatcaatgtattattgatagaaatagatacaaaatgggatcagaaaaatcac 351


Query: 312 catttaatttaaaacaatacccatcgttggttaaaattgatgatgtttcacaatgtccaa 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 catttaatttaaaacaatacccatcgttggttaaaattgatgatgtttcacaatgtccaa 291


Query: 372 aatataaatgcttaaaaagaaaatcattaaatgagtggactattggactaaacatcccag 431
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 aatataaatgcttaaaaagaaaatcattaaatgagtggactattggactaaacatcccag 231


Query: 432 ctttttgtagagaaagtcgatatgattgttcgttgtgttacaaatacatagaatgcagtt 491
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 ctttttgtagagaaagtcgatatgattgttcgttgtgttacaaatacatagaatgcagtt 171


Query: 492 tttctgatgaattttaaacaaatttaagcgcactttttgtaatttaaaatatttttatat 551
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 tttctgatgaattttaaacaaatttaagcgcactttttgtaatttaaaatatttttatat 111


Query: 552 gggagcccatataaaattaatatgtataattttcaaatttgaaaaatgctaaaacttgaa 611
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 gggagcccatataaaattaatatgtataattttcaaatttgaaaaatgctaaaacttgaa 51


Query: 612 tgtttttcacgcatatatttctcaatcactccaattaaaccatagtttt 660
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50  tgtttttcacgcatatatttctcaatcactccaattaaaccatagtttt 2

 Score = 97.6 bits (49), Expect = 5e-16
 Identities = 67/73 (91%)
 Strand = Plus / Minus


Query: 21  aattaaaaagtaacattactctattatatggtgaaatttcaattttagaaaaacaattaa 80
           |||||||  |||||||||||| |||| |||||| ||| ||||||||||||||||||||||
Sbjct: 587 aattaaatggtaacattactcaattaaatggtgcaatatcaattttagaaaaacaattaa 528


Query: 81  atggtaacattac 93
           |||||||||||||
Sbjct: 527 atggtaacattac 515

 Score = 97.6 bits (49), Expect = 5e-16
 Identities = 67/73 (91%)
 Strand = Plus / Minus


Query: 75  aattaaatggtaacattactcaattaaatggtgcaatatcaattttagaaaaacaattaa 134
           |||||||  |||||||||||| |||| |||||| ||| ||||||||||||||||||||||
Sbjct: 641 aattaaaaagtaacattactctattatatggtgaaatttcaattttagaaaaacaattaa 582


Query: 135 atggtaacattac 147
           |||||||||||||
Sbjct: 581 atggtaacattac 569

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,048,141,297
Number of extensions: 74233392
Number of successful extensions: 6922870
Number of sequences better than 10.0: 540
Length of query: 660
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 637
Effective length of database: 93,106,754,628
Effective search space: 59309002698036
Effective search space used: 59309002698036
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

Query= Contig-U14236-1 (Contig-U14236-1Q) /CSM_Contig/Contig-U14236-1Q.Seq.d
         (660 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116960_67(AC116960|pid:none) Dictyostelium discoideum chromoso...   333   2e-90
CR940353_714(CR940353|pid:none) Theileria annulata strain Ankara...    40   0.060
CR382124_304(CR382124|pid:none) Kluyveromyces lactis strain NRRL...    39   0.18
BX936398_1215(BX936398|pid:none) Yersinia pseudotuberculosis IP3...    38   0.23
CP000950_2848(CP000950|pid:none) Yersinia pseudotuberculosis YPI...    38   0.30
AE016877_4384(AE016877|pid:none) Bacillus cereus ATCC 14579, com...    38   0.30
CP001634_186(CP001634|pid:none) Kosmotoga olearia TBF 19.5.1, co...    36   0.87
CR382136_314(CR382136|pid:none) Debaryomyces hansenii strain CBS...    35   1.5
BC070974_1(BC070974|pid:none) Xenopus laevis hypothetical protei...    35   1.9
A97351(A97351) hypothetical secreted protein [imported] - Clostr...    35   1.9
CP000485_3956(CP000485|pid:none) Bacillus thuringiensis str. Al ...    35   1.9
AE017355_4272(AE017355|pid:none) Bacillus thuringiensis serovar ...    35   1.9
CP000227_4287(CP000227|pid:none) Bacillus cereus Q1, complete ge...    35   1.9
(A7TL57) RecName: Full=Autophagy-related protein 11;                   35   2.5
AE001438_156(AE001438|pid:none) Clostridium acetobutylicum ATCC ...    34   3.3
(Q54G05) RecName: Full=Putative leucine-rich repeat-containing p...    34   3.3
CP000498_595(CP000498|pid:none) Pichia stipitis CBS 6054 chromos...    34   3.3
EU588980_22(EU588980|pid:none) Clostridium phage 39-O, complete ...    34   3.3
CP000934_260(CP000934|pid:none) Cellvibrio japonicus Ueda107, co...    34   3.3
BX950851_3812(BX950851|pid:none) Erwinia carotovora subsp. atros...    34   3.3
U79729_1(U79729|pid:none) Plasmodium berghei extrachromosomal pl...    34   3.3
AK148283_1(AK148283|pid:none) Mus musculus B16 F10Y cells cDNA, ...    34   4.3
AB384463_1(AB384463|pid:none) Synthetic construct DNA, clone: pF...    34   4.3
FM212639_2(FM212639|pid:none) Human papillomavirus type 108, com...    34   4.3
AD0144(AD0144) hypothetical protein YPO1174 [imported] - Yersini...    34   4.3
CR954246_685(CR954246|pid:none) Pseudoalteromonas haloplanktis s...    34   4.3
AB290244_1(AB290244|pid:none) Uncultured bacterium clone PiGC6 D...    34   4.3
AB002334_1(AB002334|pid:none) Homo sapiens mRNA for KIAA0336 gen...    34   4.3
AB093232_1(AB093232|pid:none) Mus musculus premature mRNA for mK...    34   4.3
AF302465_2(AF302465|pid:none) Pasteurella multocida P934 region ...    33   5.7
CP001401_1014(CP001401|pid:none) Sulfolobus islandicus M.16.27, ...    33   5.7
AE009948_949(AE009948|pid:none) Streptococcus agalactiae 2603V/R...    33   5.7
CP001399_1045(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,...    33   5.7
AM263198_2303(AM263198|pid:none) Listeria welshimeri serovar 6b ...    33   5.7
FB898724_1(FB898724|pid:none) Sequence 117997 from Patent WO2008...    33   7.4
CU928163_2901(CU928163|pid:none) Escherichia coli UMN026 chromos...    33   7.4
(Q8RFV0) RecName: Full=Lipoprotein-releasing system ATP-binding ...    33   7.4
FM201786_48(FM201786|pid:none) Streptococcus pneumoniae partial ...    33   7.4
AP008209_354(AP008209|pid:none) Oryza sativa (japonica cultivar-...    33   7.4
AE017263_573(AE017263|pid:none) Mesoplasma florum L1 complete ge...    33   7.4
CP001519_16(CP001519|pid:none) Borrelia sp. SV1 plasmid SV1_lp17...    33   7.4
CP001013_1592(CP001013|pid:none) Leptothrix cholodnii SP-6, comp...    33   7.4
AE014134_2136(AE014134|pid:none) Drosophila melanogaster chromos...    33   7.4
CP000254_1323(CP000254|pid:none) Methanospirillum hungatei JF-1,...    33   7.4
AP009552_6134(AP009552|pid:none) Microcystis aeruginosa NIES-843...    33   7.4
CP000936_1284(CP000936|pid:none) Streptococcus pneumoniae Hungar...    33   9.6
CP000920_1054(CP000920|pid:none) Streptococcus pneumoniae P1031,...    33   9.6
AY898750_19(AY898750|pid:none) Streptococcus cristatus transposo...    33   9.6
DQ223241_1(DQ223241|pid:none) Enterococcus faecalis isolate 1885...    33   9.6
U58985_1(U58985|pid:none) Gardnerella vaginalis tetracycline res...    33   9.6
CP000867_9(CP000867|pid:none) Methanococcus maripaludis C6, comp...    33   9.6
EF363157_1(EF363157|pid:none) Streptococcus pyogenes strain 2948...    33   9.6
EF363159_1(EF363159|pid:none) Streptococcus pyogenes strain 3415...    33   9.6
AB426624_1(AB426624|pid:none) Streptococcus pneumoniae transposo...    33   9.6
CP000361_602(CP000361|pid:none) Arcobacter butzleri RM4018, comp...    33   9.6
BX950229_774(BX950229|pid:none) Methanococcus maripaludis strain...    33   9.6
AB426626_1(AB426626|pid:none) Streptococcus pneumoniae transposo...    33   9.6
AY812199_1(AY812199|pid:none) Schistosoma japonicum SJCHGC04028 ...    33   9.6
BX950851_2505(BX950851|pid:none) Erwinia carotovora subsp. atros...    33   9.6
AF116348_1(AF116348|pid:none) Neisseria gonorrhoeae tetracycline...    33   9.6
T25470(T25470) hypothetical protein B0507.9 - Caenorhabditis ele...    33   9.6
CP000764_2165(CP000764|pid:none) Bacillus cereus subsp. cytotoxi...    33   9.6
AB124556_1(AB124556|pid:none) Photobacterium damselae subsp. pis...    33   9.6
AJ971089_18(AJ971089|pid:none) Streptococcus pneumoniae 5216IQ c...    33   9.6
AY057894_1(AY057894|pid:none) Staphylococcus aureus strain 2952 ...    33   9.6

>AC116960_67(AC116960|pid:none) Dictyostelium discoideum chromosome
           2 map complement(1004496-821614) strain AX4, complete
           sequence.
          Length = 454

 Score =  333 bits (855), Expect = 2e-90
 Identities = 164/165 (99%), Positives = 164/165 (99%)
 Frame = +2

Query: 11  ENQKLKSNITLLYGEISILEKQLNGNITQLNGAISILEKQLNGNITLLNEEISSLNSIIT 190
           ENQKLKSNITLLYGEISILEKQLNGNITQLNGAISILEKQLNGNITLLNEEISSLNSIIT
Sbjct: 290 ENQKLKSNITLLYGEISILEKQLNGNITQLNGAISILEKQLNGNITLLNEEISSLNSIIT 349

Query: 191 DYERNNTILTHQAELDSFELKSYDQCIIDRNRYKMGSEKSPFNLKQYPSLVKIDDVSQCP 370
           DYERNNTILTHQAELDSFELKSYDQCIIDRNRYKM SEKSPFNLKQYPSLVKIDDVSQCP
Sbjct: 350 DYERNNTILTHQAELDSFELKSYDQCIIDRNRYKMESEKSPFNLKQYPSLVKIDDVSQCP 409

Query: 371 KYKCLKRKSLNEWTIGLNIPAFCRESRYDCSLCYKYIECSFSDEF 505
           KYKCLKRKSLNEWTIGLNIPAFCRESRYDCSLCYKYIECSFSDEF
Sbjct: 410 KYKCLKRKSLNEWTIGLNIPAFCRESRYDCSLCYKYIECSFSDEF 454

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,036,449,509
Number of extensions: 21044124
Number of successful extensions: 43301
Number of sequences better than 10.0: 65
Number of HSP's gapped: 43178
Number of HSP's successfully gapped: 67
Length of query: 220
Length of database: 1,051,180,864
Length adjustment: 124
Effective length of query: 96
Effective length of database: 649,847,548
Effective search space: 62385364608
Effective search space used: 62385364608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

 psg: 0.82  gvh: 0.42  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.08  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: vesicles of secretory system
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U14236-1 is cyt