Contig-U14179-1
Contig ID Contig-U14179-1
Contig update 2002.12.18
Contig sequence
>Contig-U14179-1 (Contig-U14179-1Q) /CSM_Contig/Contig-U14179-1Q.Seq.d
TACATTTTTATAATCACCTGATTTCTGTTGTATTTTTAATCATTATTTAT
TTATTTATTTATTTCAACAAAAAAAGAATTCAGTTTTTTTTTTTTTTTTT
TTAAATATCACATTATATAAAAAAATAAAAAAAAACTATTTCATTTGTAA
TACAACACAAACAACACTTTTACCACCCAACAATATATTTATTGAAATTT
TTTAAATAAATTTCAAAACTAAATTAAAAAAAAAAAAAAAACCACACCAC
AACGATAAAATATAATTATTCTAAAAGCGTTTAGATAATATATATTTAAT
ACACCAAATATAAATAAAAATCAATTTGTAAATGACGCTTGATAAAACAA
CACCCACACATATATATATACATATATCAAATGCCACCACCCCCACCACC
ACCACCTAAAGCACCACCACCCCCAGCAGCTCCACCAAAAACTGCTGAAA
GAGGTGCTTTACTCAGTTCAATTCAAAAGGGTTCAAAATTAAAAAAAACA
GTCACTGTAGATAAATCTGGTCCAGTTTTAACAGCACCAAAACCATCAGG
AGGTGGAGGTATGCCAACTCCAGGTGGAGGAGGTATGCCAAGACCAGGAG
GTGGTTCATCAGGAGGTGGTGCACCAGGTCCACAATTGGGTGGATTATTT
TCAGGAGGTATGCCACAATTGAAACCATCAGGTGGAACATTGAAAAAAGC
TGCACCACCACCAATGATGGCACCAGTTCAAGCTGCCCCACCATCCTATG
GTAAACCATCAGCACCAACTCCATCATTTAAAGCACCACCAACCGCTTCA
CCACCAGCATTCAAAGCACCACCACCATTCAAGGCACCACCAACCGCCAC
ACCACCAACACCAACTCCATCATTTAAAGCACCACCAACCGCTGCACCAC
CAGCTTTCAAAGCTCAACCAGCACCACCACCATCATTTGGAGGCGGTCCA
AAACCAGCACCACCACCAGCAAGACCACCACCACCACCATCAAGAGCTCC
ATCATCATCTGGTGGTGATGATTCACAAGCATTAAGAGACCAAATCTCTC
AATTGGAACAACAAGTTAGAGATTATCAAAATAAAGTTCGTCAACTTGAA
TCTGATTTGGCTGCCGCTAAAAAATCATCTTCAGGTACTGGTAAGAAAGC
TGTTGCTCTCTACGAATATTCTTCAAATGAACCAGGTGATATCAACTTTA
AAGCTGGCCAAAATATTGATATTATCTCTGTCGAAGGTGATTGGTCAACC
GGTAGAATAGAGGGTGTATTCCCAACCAATTATACAAAACTTCTTTAATT
AATATAAAAA

Gap no gap
Contig length 1310
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 3374646
End point 3375956
Strand (PLUS/MINUS) PLUS
Number of clones 10
Number of EST 12
Link to clone list U14179
List of clone(s)

est1=VFG637F,1,144
est2=VSJ883F,18,145
est3=SLE434F,27,300
est4=CFB890F,234,429
est5=SSD466E,254,1310
est6=CHJ229F,283,494
est7=CHJ229Z,283,480
est8=SLE434Z,601,1304
est9=VSK371Z,709,1121
est10=CHA405Z,888,1102
est11=SLH158Z,904,1305
est12=SLF709Z,960,1307
Translated Amino Acid sequence
hfynhlisvvfliiiylfiyfnkkriqffffff*ishyikk*kktisfviqhkqhfyhpt
iyllkffk*iskln*kkkknhtttikynysksv*iiyi*ytkyk*ksick*RLIKQHPHI
YIYIYQMPPPPPPPPKAPPPPAAPPKTAERGALLSSIQKGSKLKKTVTVDKSGPVLTAPK
PSGGGGMPTPGGGGMPRPGGGSSGGGAPGPQLGGLFSGGMPQLKPSGGTLKKAAPPPMMA
PVQAAPPSYGKPSAPTPSFKAPPTASPPAFKAPPPFKAPPTATPPTPTPSFKAPPTAAPP
AFKAQPAPPPSFGGGPKPAPPPARPPPPPSRAPSSSGGDDSQALRDQISQLEQQVRDYQN
KVRQLESDLAAAKKSSSGTGKKAVALYEYSSNEPGDINFKAGQNIDIISVEGDWSTGRIE
GVFPTNYTKLL*li*k


Translated Amino Acid sequence (All Frames)
Frame A:
yifiit*fllyf*slfiylfistkkefsffffffkyhii*knkkklfhl*yntnntfttq
qyiy*nflnkfqn*ikkkkkttpqr*niiilkafr*yifntpninknqfvnda**nntht
yiytyikchhphhhhlkhhhpqqlhqkllkevlysvqfkrvqn*kkqsl*inlvqf*qhq
nhqevevcqlqveevcqdqevvhqevvhqvhnwvdyfqevchn*nhqveh*kklhhhq*w
hqfklphhpmvnhqhqlhhlkhhqplhhqhskhhhhsrhhqpphhqhqlhhlkhhqplhh
qlsklnqhhhhhleavqnqhhhqqdhhhhhqelhhhlvvmihkh*etkslnwnnkleiik
ikfvnlnliwlplknhlqvlvrklllstnilqmnqvistlklakililslskvigqpve*
rvysqpiiqnffn*yk


Frame B:
tfl*spdfccifnhylfiylfqqkknsvffffflnitlykkikknyficnttqttllppn
nifieif*infktklkkkkkphhndki*lf*krldniylihqi*ikinl*mtldkttpth
iyihisnattptttt*stttpssstknc*krcftqfnskgfkikknshcr*iwssfnstk
tirrwryansrwrryaktrrwfirrwctrstigwiifrryatietirwnieksctttndg
tssscptilw*tistnsii*sttnrfttsiqstttiqgttnrhttntnsii*sttnrctt
sfqsststttiiwrrsktstttsktttttikssiiiww**ftsikrpnlsigtts*rlsk
*ssst*i*fgcr*kiifryw*esccslriffk*tr*yql*swpky*yylcrr*lvnr*nr
gcipnqlyktslinik


Frame C:
hfynhlisvvfliiiylfiyfnkkriqffffff*ishyikk*kktisfviqhkqhfyhpt
iyllkffk*iskln*kkkknhtttikynysksv*iiyi*ytkyk*ksick*RLIKQHPHI
YIYIYQMPPPPPPPPKAPPPPAAPPKTAERGALLSSIQKGSKLKKTVTVDKSGPVLTAPK
PSGGGGMPTPGGGGMPRPGGGSSGGGAPGPQLGGLFSGGMPQLKPSGGTLKKAAPPPMMA
PVQAAPPSYGKPSAPTPSFKAPPTASPPAFKAPPPFKAPPTATPPTPTPSFKAPPTAAPP
AFKAQPAPPPSFGGGPKPAPPPARPPPPPSRAPSSSGGDDSQALRDQISQLEQQVRDYQN
KVRQLESDLAAAKKSSSGTGKKAVALYEYSSNEPGDINFKAGQNIDIISVEGDWSTGRIE
GVFPTNYTKLL*li*k


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U14179-1 (Contig-U14179-1Q)
/CSM_Contig/Contig-U14179-1Q.Seq.d
(1310 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U14179-1 (Contig-U14179-1Q) /CSM_Contig/Conti... 664 0.0
Contig-U10513-1 (Contig-U10513-1Q) /CSM_Contig/Conti... 56 1e-07
Contig-U05118-1 (Contig-U05118-1Q) /CSM_Contig/Conti... 38 0.023
Contig-U02677-1 (Contig-U02677-1Q) /CSM_Contig/Conti... 38 0.023
Contig-U13935-1 (Contig-U13935-1Q) /CSM_Contig/Conti... 36 0.093
Contig-U12568-1 (Contig-U12568-1Q) /CSM_Contig/Conti... 36 0.093
Contig-U12230-1 (Contig-U12230-1Q) /CSM_Contig/Conti... 36 0.093
Contig-U10218-1 (Contig-U10218-1Q) /CSM_Contig/Conti... 36 0.093
Contig-U09319-1 (Contig-U09319-1Q) /CSM_Contig/Conti... 36 0.093
Contig-U07064-1 (Contig-U07064-1Q) /CSM_Contig/Conti... 36 0.093

>Contig-U14179-1 (Contig-U14179-1Q) /CSM_Contig/Contig-U14179-1Q.Seq.d
Length = 1310

Score = 664 bits (335), Expect = 0.0
Identities = 351/359 (97%)
Strand = Plus / Plus


Query: 426 gcagctccaccaaaaactgctgaaagaggtgctttactcagttcaattcaaaagggttca 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gcagctccaccaaaaactgctgaaagaggtgctttactcagttcaattcaaaagggttca 485


Query: 486 aaattnnnnnnnncagtcactgtagataaatctggtccagttttaacagcaccaaaacca 545
||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 aaattaaaaaaaacagtcactgtagataaatctggtccagttttaacagcaccaaaacca 545


Query: 546 tcaggaggtggaggtatgccaactccaggtggaggaggtatgccaagaccaggaggtggt 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tcaggaggtggaggtatgccaactccaggtggaggaggtatgccaagaccaggaggtggt 605


Query: 606 tcatcaggaggtggtgcaccaggtccacaattgggtggattattttcaggaggtatgcca 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tcatcaggaggtggtgcaccaggtccacaattgggtggattattttcaggaggtatgcca 665


Query: 666 caattgaaaccatcaggtggaacattgaaaaaagctgcaccaccaccaatgatggcacca 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 caattgaaaccatcaggtggaacattgaaaaaagctgcaccaccaccaatgatggcacca 725


Query: 726 gttcaagctgccccaccatcctatggtaaaccatcagcaccaactccatcatttaaagc 784
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 gttcaagctgccccaccatcctatggtaaaccatcagcaccaactccatcatttaaagc 784


Score = 636 bits (321), Expect = 0.0
Identities = 321/321 (100%)
Strand = Plus / Plus


Query: 990 tcaagagctccatcatcatctggtggtgatgattcacaagcattaagagaccaaatctct 1049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990 tcaagagctccatcatcatctggtggtgatgattcacaagcattaagagaccaaatctct 1049


Query: 1050 caattggaacaacaagttagagattatcaaaataaagttcgtcaacttgaatctgatttg 1109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1050 caattggaacaacaagttagagattatcaaaataaagttcgtcaacttgaatctgatttg 1109


Query: 1110 gctgccgctaaaaaatcatcttcaggtactggtaagaaagctgttgctctctacgaatat 1169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1110 gctgccgctaaaaaatcatcttcaggtactggtaagaaagctgttgctctctacgaatat 1169


Query: 1170 tcttcaaatgaaccaggtgatatcaactttaaagctggccaaaatattgatattatctct 1229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1170 tcttcaaatgaaccaggtgatatcaactttaaagctggccaaaatattgatattatctct 1229


Query: 1230 gtcgaaggtgattggtcaaccggtagaatagagggtgtattcccaaccaattatacaaaa 1289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1230 gtcgaaggtgattggtcaaccggtagaatagagggtgtattcccaaccaattatacaaaa 1289


Query: 1290 cttctttaattaatataaaaa 1310
|||||||||||||||||||||
Sbjct: 1290 cttctttaattaatataaaaa 1310


Score = 234 bits (118), Expect = 2e-61
Identities = 118/118 (100%)
Strand = Plus / Plus


Query: 242 ccacaccacaacgataaaatataattattctaaaagcgtttagataatatatatttaata 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ccacaccacaacgataaaatataattattctaaaagcgtttagataatatatatttaata 301


Query: 302 caccaaatataaataaaaatcaatttgtaaatgacgcttgataaaacaacacccacac 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 caccaaatataaataaaaatcaatttgtaaatgacgcttgataaaacaacacccacac 359


Score = 178 bits (90), Expect = 1e-44
Identities = 90/90 (100%)
Strand = Plus / Plus


Query: 136 ctatttcatttgtaatacaacacaaacaacacttttaccacccaacaatatatttattga 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 ctatttcatttgtaatacaacacaaacaacacttttaccacccaacaatatatttattga 195


Query: 196 aattttttaaataaatttcaaaactaaatt 225
||||||||||||||||||||||||||||||
Sbjct: 196 aattttttaaataaatttcaaaactaaatt 225


Score = 176 bits (89), Expect = 4e-44
Identities = 89/89 (100%)
Strand = Plus / Plus


Query: 864 actccatcatttaaagcaccaccaaccgctgcaccaccagctttcaaagctcaaccagca 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 actccatcatttaaagcaccaccaaccgctgcaccaccagctttcaaagctcaaccagca 923


Query: 924 ccaccaccatcatttggaggcggtccaaa 952
|||||||||||||||||||||||||||||
Sbjct: 924 ccaccaccatcatttggaggcggtccaaa 952


Score = 83.8 bits (42), Expect = 4e-16
Identities = 48/50 (96%)
Strand = Plus / Plus


Query: 864 actccatcatttaaagcaccaccaaccgctgcaccaccagctttcaaagc 913
|||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 768 actccatcatttaaagcaccaccaaccgcttcaccaccagcattcaaagc 817


Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus


Query: 763 caccaactccatcatttaaagc 784
||||||||||||||||||||||
Sbjct: 859 caccaactccatcatttaaagc 880


Score = 38.2 bits (19), Expect = 0.023
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 65 caacaaaaaaagaattcag 83
|||||||||||||||||||
Sbjct: 65 caacaaaaaaagaattcag 83


Score = 34.2 bits (17), Expect = 0.37
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 916 aaccagcaccaccacca 932
|||||||||||||||||
Sbjct: 952 aaccagcaccaccacca 968


Score = 32.2 bits (16), Expect = 1.4
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 103 aaatatcacattatat 118
||||||||||||||||
Sbjct: 103 aaatatcacattatat 118


Score = 32.2 bits (16), Expect = 1.4
Identities = 22/24 (91%)
Strand = Plus / Plus


Query: 879 gcaccaccaaccgctgcaccacca 902
|||||||||||||| ||||||||
Sbjct: 834 gcaccaccaaccgccacaccacca 857


Score = 30.2 bits (15), Expect = 5.7
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 917 accagcaccaccaccatca 935
|||| ||||||||||||||
Sbjct: 974 accaccaccaccaccatca 992


>Contig-U10513-1 (Contig-U10513-1Q) /CSM_Contig/Contig-U10513-1Q.Seq.d
Length = 624

Score = 56.0 bits (28), Expect = 1e-07
Identities = 55/64 (85%)
Strand = Plus / Plus


Query: 427 cagctccaccaaaaactgctgaaagaggtgctttactcagttcaattcaaaagggttcaa 486
|||| ||||| ||||| |||||||||||||| ||| | | |||||||||||| ||| |||
Sbjct: 176 cagccccacctaaaacagctgaaagaggtgcattattaaattcaattcaaaaaggtgcaa 235


Query: 487 aatt 490
||||
Sbjct: 236 aatt 239


>Contig-U05118-1 (Contig-U05118-1Q) /CSM_Contig/Contig-U05118-1Q.Seq.d
Length = 1213

Score = 38.2 bits (19), Expect = 0.023
Identities = 19/19 (100%)
Strand = Plus / Minus


Query: 190 tattgaaattttttaaata 208
|||||||||||||||||||
Sbjct: 298 tattgaaattttttaaata 280


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,608
Number of Sequences: 6905
Number of extensions: 18608
Number of successful extensions: 2203
Number of sequences better than 10.0: 288
length of query: 1310
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1294
effective length of database: 5,564,391
effective search space: 7200321954
effective search space used: 7200321954
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.19
Homology vs DNA
Query= Contig-U14179-1 (Contig-U14179-1Q) /CSM_Contig/Contig-U14179-1Q.Seq.d
(1310 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU034975) Dictyostelium discoideum slug cDNA, clone SLE434. 626 0.0 3
(C92328) Dictyostelium discoideum slug cDNA, clone SSD466. 636 0.0 3
(AU053109) Dictyostelium discoideum slug cDNA, clone SLF709. 632 e-177 1
(AU039213) Dictyostelium discoideum slug cDNA, clone SLH158. 628 e-175 1
(AU271083) Dictyostelium discoideum vegetative cDNA clone:VS... 260 e-102 3
(BJ377236) Dictyostelium discoideum cDNA clone:ddc22j02, 3' ... 170 4e-46 3
(AU061490) Dictyostelium discoideum slug cDNA, clone SLE434. 178 9e-44 2
(AU271082) Dictyostelium discoideum vegetative cDNA clone:VS... 176 1e-39 1
(AU072121) Dictyostelium discoideum slug cDNA, clone SSD466. 105 1e-24 2
(BJ366818) Dictyostelium discoideum cDNA clone:ddc40i08, 5' ... 101 2e-23 2
(BJ381098) Dictyostelium discoideum cDNA clone:ddc40i08, 3' ... 66 6e-13 2
(BJ360180) Dictyostelium discoideum cDNA clone:ddc4d24, 5' e... 74 1e-08 1
(EJ129276) 1092343407925 Global-Ocean-Sampling_GS-27-01-01-1... 52 0.054 1
(AC180425) Strongylocentrotus purpuratus clone R3-3103F21, W... 50 0.21 1
(AC177205) Strongylocentrotus purpuratus clone R3-4019D20, W... 50 0.21 1
(ED160545) AUAC-aai53g02.b1 Ascaris suum whole genome shotgu... 50 0.21 1
(BJ416750) Dictyostelium discoideum cDNA clone:ddv27m02, 5' ... 50 0.21 1
(CF801916) rj54c05.y1 Meloidogyne chitwoodi female SL1 pGEM ... 44 0.46 2
(AC189734) Trichinella spiralis BAC clone TS195-20H12 from c... 36 0.48 2
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 38 0.58 11
(CR382364) Zebrafish DNA sequence from clone CH211-198E11 in... 48 0.85 1
(AM426903) Vitis vinifera contig VV78X243686.1, whole genome... 48 0.85 1
(FI135467) CsB10STC_12H07R_879 ends of BAC library of B10 li... 48 0.85 1
(FE264056) CAZO3635.fwd CAZO Naegleria gruberi Flagellate St... 48 0.85 1
(FG710264) G1144P322FP4.T0 Anolis carolinensis pooled normal... 46 0.98 2
(DN675403) CFW86-B11.y1d-s SHGC-CFW Gasterosteus aculeatus c... 34 2.2 2
(AC129683) Rattus norvegicus clone CH230-291M6, *** SEQUENCI... 42 2.5 2
(AC006996) Homo sapiens BAC clone RP11-445J11 from 7, comple... 46 2.9 3
(AC103346) Rattus norvegicus BAC CH230-2K7 (Children's Hosp... 42 3.3 2
(AC190235) Pan troglodytes BAC clone CH251-330D9 from chromo... 46 3.3 1
(AP010503) Lotus japonicus genomic DNA, chromosome 4, clone:... 46 3.3 1
(AM469084) Vitis vinifera, whole genome shotgun sequence, co... 46 3.3 1
(AL132979) Arabidopsis thaliana DNA chromosome 3, BAC clone ... 46 3.3 1
(EA023678) Sequence 296 from patent US 7135558. 46 3.3 1
(EA023677) Sequence 295 from patent US 7135558. 46 3.3 1
(CQ577947) Sequence 5705 from Patent WO0171042. 46 3.3 1
(CQ577946) Sequence 5704 from Patent WO0171042. 46 3.3 1
(BT010019) Drosophila melanogaster RE10624 full insert cDNA. 46 3.3 1
(AF053358) Drosophila melanogaster guanine nucleotide exchan... 46 3.3 1
(AE014298) Drosophila melanogaster chromosome X, complete se... 46 3.3 1
(AC023722) Drosophila melanogaster X BAC RP98-48O24 (Roswell... 46 3.3 1
(AC016598) Homo sapiens chromosome 5 clone CTD-2050E21, comp... 46 3.3 1
(AC008645) Homo sapiens chromosome 5 clone CTB-181L5, comple... 46 3.3 1
(AC202820) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB... 46 3.3 1
(AC013845) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 46 3.3 1
(AQ532370) RPCI-11-379H15.TJ RPCI-11 Homo sapiens genomic cl... 46 3.3 1
(FH459242) CHO_OF4929xd14r1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 3.3 1
(FH417778) CHO_OF4883xg11r1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 3.3 1
(FH413921) CHO_OF4870xg18f1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 3.3 1
(FH311387) CHO_OF4425xc06f1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 3.3 1
(FH309675) CHO_OF4424xc06f1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 3.3 1
(FH058728) CHO_OF3490xc23f1.ab1 CHO_OF3 Nicotiana tabacum ge... 46 3.3 1
(EJ871964) 1093018350599 Global-Ocean-Sampling_GS-30-02-01-1... 46 3.3 1
(EJ867039) 1093018285700 Global-Ocean-Sampling_GS-30-02-01-1... 46 3.3 1
(EI051967) hhd0009be04.b1 hhd Oryza coarctata genomic clone ... 46 3.3 1
(ED355726) AUAC-aaq02c02.g1 Ascaris suum whole genome shotgu... 46 3.3 1
(DX418518) MUGQ_CH252P032P21T7_GL435_081 CHORI-252 Vervet Mo... 46 3.3 1
(AL088132) Arabidopsis thaliana genome survey sequence SP6 e... 46 3.3 1
(AL074903) Drosophila melanogaster genome survey sequence TE... 46 3.3 1
(CZ869631) OC__Ba0267G09.f OC__Ba Oryza coarctata genomic cl... 46 3.3 1
(DT790228) 126456506 TL1 Tribolium castaneum cDNA clone 56A2... 46 3.3 1
(FL508691) 0222230 Adonis aestivalis flower Adonis aestivali... 46 3.3 1
(CP001037) Nostoc punctiforme PCC 73102, complete genome. 46 3.3 1
(AM260525) Bartonella tribocorum CIP 105476 complete genome,... 46 3.3 1
(ED758200) GM_WBb0127L11.r GM_WBb Glycine max genomic clone ... 34 5.7 3
(AP004152) Oryza sativa Japonica Group genomic DNA, chromoso... 38 5.7 3
(AA846808) aj99f07.s1 Soares_parathyroid_tumor_NbHPA Homo sa... 36 6.2 2
(CR848826) Zebrafish DNA sequence from clone CH211-101L24 in... 34 6.5 2
(AC019924) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 44 6.9 2
(AX345668) Sequence 739 from Patent WO0200928. 32 7.1 2
(AC216702) Solanum lycopersicum chromosome 7 clone C07SLm009... 36 7.4 6
(AC220809) Bos taurus clone CH240-345H21, WORKING DRAFT SEQU... 38 7.8 2

>(AU034975) Dictyostelium discoideum slug cDNA, clone SLE434.
Length = 704

Score = 626 bits (316), Expect(3) = 0.0
Identities = 316/316 (100%)
Strand = Plus / Plus


Query: 990 tcaagagctccatcatcatctggtggtgatgattcacaagcattaagagaccaaatctct 1049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tcaagagctccatcatcatctggtggtgatgattcacaagcattaagagaccaaatctct 448


Query: 1050 caattggaacaacaagttagagattatcaaaataaagttcgtcaacttgaatctgatttg 1109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 caattggaacaacaagttagagattatcaaaataaagttcgtcaacttgaatctgatttg 508


Query: 1110 gctgccgctaaaaaatcatcttcaggtactggtaagaaagctgttgctctctacgaatat 1169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gctgccgctaaaaaatcatcttcaggtactggtaagaaagctgttgctctctacgaatat 568


Query: 1170 tcttcaaatgaaccaggtgatatcaactttaaagctggccaaaatattgatattatctct 1229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tcttcaaatgaaccaggtgatatcaactttaaagctggccaaaatattgatattatctct 628


Query: 1230 gtcgaaggtgattggtcaaccggtagaatagagggtgtattcccaaccaattatacaaaa 1289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 gtcgaaggtgattggtcaaccggtagaatagagggtgtattcccaaccaattatacaaaa 688


Query: 1290 cttctttaattaatat 1305
||||||||||||||||
Sbjct: 689 cttctttaattaatat 704

Score = 359 bits (181), Expect(3) = 0.0
Identities = 181/181 (100%)
Strand = Plus / Plus


Query: 602 tggttcatcaggaggtggtgcaccaggtccacaattgggtggattattttcaggaggtat 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggttcatcaggaggtggtgcaccaggtccacaattgggtggattattttcaggaggtat 60


Query: 662 gccacaattgaaaccatcaggtggaacattgaaaaaagctgcaccaccaccaatgatggc 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gccacaattgaaaccatcaggtggaacattgaaaaaagctgcaccaccaccaatgatggc 120


Query: 722 accagttcaagctgccccaccatcctatggtaaaccatcagcaccaactccatcatttaa 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 accagttcaagctgccccaccatcctatggtaaaccatcagcaccaactccatcatttaa 180


Query: 782 a 782
|
Sbjct: 181 a 181

Score = 28.2 bits (14), Expect(3) = 0.0
Identities = 14/14 (100%)
Strand = Plus / Plus


Query: 903 gctttcaaagctca 916
||||||||||||||
Sbjct: 302 gctttcaaagctca 315

Score = 40.1 bits (20), Expect(3) = 1.7
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 763 caccaactccatcatttaaa 782
||||||||||||||||||||
Sbjct: 258 caccaactccatcatttaaa 277

Score = 26.3 bits (13), Expect(3) = 1.7
Identities = 13/13 (100%)
Strand = Plus / Plus


Query: 544 catcaggaggtgg 556
|||||||||||||
Sbjct: 6 catcaggaggtgg 18

Score = 26.3 bits (13), Expect(3) = 1.7
Identities = 13/13 (100%)
Strand = Plus / Plus


Query: 578 aggaggtatgcca 590
|||||||||||||
Sbjct: 52 aggaggtatgcca 64

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 998,898,787
Number of extensions: 63268909
Number of successful extensions: 5145158
Number of sequences better than 10.0: 74
Length of query: 1310
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1286
Effective length of database: 97,308,875,965
Effective search space: 125139214490990
Effective search space used: 125139214490990
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.10
Homology vs Protein
Query= Contig-U14179-1 (Contig-U14179-1Q) /CSM_Contig/Contig-U14179-1Q.Seq.d
(1310 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

EF134956_1(EF134956|pid:none) Lampetra fluviatilis intersectin m... 55 4e-06
BC074138_1(BC074138|pid:none) Xenopus laevis hypothetical protei... 55 6e-06
BX005416_2(BX005416|pid:none) Zebrafish DNA sequence from clone ... 54 1e-05
AL606751_2(AL606751|pid:none) Zebrafish DNA sequence from clone ... 54 1e-05
BX005416_1(BX005416|pid:none) Zebrafish DNA sequence from clone ... 54 1e-05
AB384587_1(AB384587|pid:none) Synthetic construct DNA, clone: pF... 53 2e-05
AF248540_1(AF248540|pid:none) Homo sapiens intersectin 2 (SH3D1B... 53 2e-05
BC146779_1(BC146779|pid:none) Homo sapiens intersectin 2, mRNA (... 53 2e-05
U61167_1(U61167|pid:none) Human SH3 domain-containing protein SH... 53 2e-05
AF182199_1(AF182199|pid:none) Homo sapiens intersectin 2 short i... 53 2e-05
(Q9NZM3) RecName: Full=Intersectin-2; AltName: Full=SH3 domain-c... 53 2e-05
AB033082_1(AB033082|pid:none) Homo sapiens mRNA for KIAA1256 pro... 53 2e-05
AF001630_1(AF001630|pid:none) Homo sapiens SH3P18-like WASP asso... 53 2e-05
AK122480_1(AK122480|pid:none) Mus musculus premature mRNA for mK... 52 5e-05
(Q9Z0R6) RecName: Full=Intersectin-2; AltName: Full=SH3 domain-c... 52 5e-05
BC138262_1(BC138262|pid:none) Mus musculus intersectin 2, mRNA (... 52 5e-05
BC170413_1(BC170413|pid:none) Xenopus laevis intersectin, mRNA (... 51 8e-05
(O42287) RecName: Full=Intersectin-1; &AF032118_1(AF032118|pid:... 51 8e-05
AK160794_1(AK160794|pid:none) Mus musculus 14, 17 days embryo he... 50 1e-04
AF169621_1(AF169621|pid:none) Mus musculus Ese1 protein mRNA, pa... 50 1e-04
BC156473_1(BC156473|pid:none) Synthetic construct Mus musculus c... 50 1e-04
AF132478_1(AF132478|pid:none) Mus musculus Ese1 protein mRNA, co... 50 1e-04
(Q9Z0R4) RecName: Full=Intersectin-1; AltName: Full=EH and SH3 d... 50 1e-04
(Q9WVE9) RecName: Full=Intersectin-1; AltName: Full=EH domain an... 50 1e-04
AF114488_1(AF114488|pid:none) Homo sapiens intersectin short iso... 50 2e-04
AF064243_1(AF064243|pid:none) Homo sapiens intersectin short for... 50 2e-04
EU120734_1(EU120734|pid:none) Homo sapiens intersectin 1 long fo... 50 2e-04
EU120733_1(EU120733|pid:none) Homo sapiens intersectin 1 long fo... 50 2e-04
DQ340865_1(DQ340865|pid:none) Homo sapiens intersectin 1 short f... 50 2e-04
AF064244_1(AF064244|pid:none) Homo sapiens intersectin long form... 50 2e-04
(Q15811) RecName: Full=Intersectin-1; AltName: Full=SH3 domain-c... 50 2e-04
AY340592_1(AY340592|pid:none) Homo sapiens intersectin 1 isoform... 50 2e-04
AF053957_1(AF053957|pid:none) Drosophila melanogaster dynamin as... 49 3e-04
BT024977_1(BT024977|pid:none) Drosophila melanogaster IP14822 fu... 49 3e-04
AE014134_3450(AE014134|pid:none) Drosophila melanogaster chromos... 49 3e-04
AK082606_1(AK082606|pid:none) Mus musculus 0 day neonate cerebel... 48 7e-04
FN357341_2(FN357341|pid:none) Schistosoma mansoni genome sequenc... 48 9e-04
AE013599_3536(AE013599|pid:none) Drosophila melanogaster chromos... 48 9e-04
AE013599_3537(AE013599|pid:none) Drosophila melanogaster chromos... 48 9e-04
FN313755_1(FN313755|pid:none) Schistosoma japonicum isolate Anhu... 47 0.001
CR380955_381(CR380955|pid:none) Candida glabrata strain CBS138 c... 47 0.001
L06795_2(L06795|pid:none) Saccharomyces cerevisiae open reading ... 47 0.002
(P32793) RecName: Full=Protein YSC84; AltName: Full=LAS seventee... 47 0.002
(A7A261) RecName: Full=LAS seventeen-binding protein 3; ... 47 0.002
CR382121_351(CR382121|pid:none) Kluyveromyces lactis strain NRRL... 47 0.002
FN392320_120(FN392320|pid:none) Pichia pastoris GS115 chromosome... 47 0.002
CU928179_27(CU928179|pid:none) Zygosaccharomyces rouxii strain C... 46 0.003
AK292312_1(AK292312|pid:none) Homo sapiens cDNA FLJ78625 complet... 45 0.006
AK026507_1(AK026507|pid:none) Homo sapiens cDNA: FLJ22854 fis, c... 45 0.006
(Q3SZ01) RecName: Full=SH3 domain-containing YSC84-like protein ... 45 0.006
(Q96HL8) RecName: Full=SH3 domain-containing YSC84-like protein ... 45 0.006
AE017341_341(AE017341|pid:none) Cryptococcus neoformans var. neo... 45 0.008
(O08641) RecName: Full=SH3 domain-containing YSC84-like protein ... 44 0.010
BC058557_1(BC058557|pid:none) Mus musculus Sh3 domain YSC-like 1... 44 0.010
(B0BNA1) RecName: Full=SH3 domain-containing YSC84-like protein ... 44 0.010
FM992689_442(FM992689|pid:none) Candida dubliniensis CD36 chromo... 44 0.010
CR382135_646(CR382135|pid:none) Debaryomyces hansenii strain CBS... 44 0.010
(O74352) RecName: Full=Protein hob1; AltName: Full=Homolog of Bi... 44 0.013
AE016820_675(AE016820|pid:none) Ashbya gossypii (= Eremothecium ... 44 0.013
AE016819_553(AE016819|pid:none) Ashbya gossypii (= Eremothecium ... 44 0.013
(O43125) RecName: Full=Protein csh3; &AB011825_1(AB011825|pid:n... 44 0.017
AC116986_64(AC116986|pid:none) Dictyostelium discoideum chromoso... 43 0.022
BC155558_1(BC155558|pid:none) Danio rerio zgc:171590, mRNA (cDNA... 43 0.022
FM992688_692(FM992688|pid:none) Candida dubliniensis CD36 chromo... 43 0.022
CR382134_370(CR382134|pid:none) Debaryomyces hansenii strain CBS... 43 0.022
CR382130_562(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 43 0.022
CP000496_1039(CP000496|pid:none) Pichia stipitis CBS 6054 chromo... 42 0.037
(P39743) RecName: Full=Reduced viability upon starvation protein... 42 0.037
CU928176_476(CU928176|pid:none) Zygosaccharomyces rouxii strain ... 42 0.037
CR382129_152(CR382129|pid:none) Yarrowia lipolytica strain CLIB1... 42 0.037
(Q7S6J4) RecName: Full=Class E vacuolar protein-sorting machiner... 42 0.037
FN357528_10(FN357528|pid:none) Schistosoma mansoni genome sequen... 42 0.049
CU928180_541(CU928180|pid:none) Kluyveromyces thermotolerans str... 42 0.049
AM270227_6(AM270227|pid:none) Aspergillus niger contig An11c0100... 42 0.049
CR382139_517(CR382139|pid:none) Debaryomyces hansenii strain CBS... 42 0.064
AE014297_2582(AE014297|pid:none) Drosophila melanogaster chromos... 42 0.064
CU633895_130(CU633895|pid:none) Podospora anserina genomic DNA c... 42 0.064
AF030131_1(AF030131|pid:none) Mus musculus Plenty of SH3s (POSH)... 42 0.064
AF085185_1(AF085185|pid:none) Acanthamoeba castellanii Myosin-IA... 42 0.064
(Q9P6R1) RecName: Full=Verprolin; &AL354632_9(AL354632|pid:none... 41 0.11
BC002914_1(BC002914|pid:none) Homo sapiens WAS/WASL interacting ... 41 0.11
FM992693_366(FM992693|pid:none) Candida dubliniensis CD36 chromo... 41 0.11
AF031588_1(AF031588|pid:none) Homo sapiens WASP interacting prot... 41 0.11
AB290331_1(AB290331|pid:none) Cyprinus carpio p67phox mRNA for n... 41 0.11
AC010894_2(AC010894|pid:none) Homo sapiens BAC clone RP11-483E17... 41 0.11
U50729_1(U50729|pid:none) Human p40-phox (NCF4) gene, exon 10, a... 41 0.11
(Q4P5J4) RecName: Full=Class E vacuolar protein-sorting machiner... 41 0.11
(Q8K1I7) RecName: Full=WAS/WASL-interacting protein family membe... 41 0.11
BC072475_1(BC072475|pid:none) Rattus norvegicus WAS/WASL interac... 41 0.11
BC110288_1(BC110288|pid:none) Homo sapiens WAS/WASL interacting ... 41 0.11
(Q5BBL4) RecName: Full=Class E vacuolar protein-sorting machiner... 41 0.11
(Q1E878) RecName: Full=Class E vacuolar protein-sorting machiner... 41 0.11
AK301271_1(AK301271|pid:none) Homo sapiens cDNA FLJ56555 complet... 41 0.11
AL928813_2(AL928813|pid:none) Mouse DNA sequence from clone RP23... 41 0.11
AE017347_378(AE017347|pid:none) Cryptococcus neoformans var. neo... 40 0.14
AK173185_1(AK173185|pid:none) Mus musculus mRNA for mKIAA1494 pr... 40 0.14
AJ851593_1(AJ851593|pid:none) Gallus gallus mRNA for hypothetica... 40 0.14
(Q9WUD9) RecName: Full=Proto-oncogene tyrosine-protein kinase Sr... 40 0.14
FB728435_1(FB728435|pid:none) Sequence 110 from Patent WO2007002... 40 0.14
(Q69ZI1) RecName: Full=Putative E3 ubiquitin-protein ligase SH3R... 40 0.14
(Q6NRD3) RecName: Full=Putative E3 ubiquitin-protein ligase SH3R... 40 0.14
(Q5RBR0) RecName: Full=Putative E3 ubiquitin-protein ligase SH3R... 40 0.19
AB025219_1(AB025219|pid:none) Homo sapiens NCF4 mRNA for p40phox... 40 0.19
AK290924_1(AK290924|pid:none) Homo sapiens cDNA FLJ75679 complet... 40 0.19
AK021429_1(AK021429|pid:none) Homo sapiens cDNA FLJ11367 fis, cl... 40 0.19
AX399856_1(AX399856|pid:none) Sequence 27 from Patent WO0218424. 40 0.19
AK223324_1(AK223324|pid:none) Homo sapiens mRNA for neutrophil c... 40 0.19
BC053671_1(BC053671|pid:none) Homo sapiens SH3 domain containing... 40 0.19
CR542078_1(CR542078|pid:none) Homo sapiens full open reading fra... 40 0.19
AB174622_1(AB174622|pid:none) Macaca fascicularis brain cDNA clo... 40 0.19
(Q15080) RecName: Full=Neutrophil cytosol factor 4; Sho... 40 0.19
AL008637_3(AL008637|pid:none) Human DNA sequence from clone CTA-... 40 0.19
BC041023_1(BC041023|pid:none) Homo sapiens SH3 domain containing... 40 0.19
(P53281) RecName: Full=LAS seventeen-binding protein 1; ... 40 0.19
AB168387_1(AB168387|pid:none) Macaca fascicularis testis cDNA cl... 40 0.24
BC085613_1(BC085613|pid:none) Homo sapiens SH3 domain containing... 40 0.24
AK092528_1(AK092528|pid:none) Homo sapiens cDNA FLJ35209 fis, cl... 40 0.24
AL133047_1(AL133047|pid:none) Homo sapiens mRNA; cDNA DKFZp434D0... 40 0.24
BX647422_1(BX647422|pid:none) Homo sapiens mRNA; cDNA DKFZp686I0... 40 0.24
AK294476_1(AK294476|pid:none) Homo sapiens cDNA FLJ61692 complet... 40 0.24
AF132672_1(AF132672|pid:none) Rattus norvegicus EH-domain/SH3-do... 40 0.24
AK291025_1(AK291025|pid:none) Homo sapiens cDNA FLJ76174 complet... 40 0.24
(A5D7F8) RecName: Full=Putative E3 ubiquitin-protein ligase SH3R... 40 0.24
BC108893_1(BC108893|pid:none) Homo sapiens SH3 domain containing... 40 0.24
BC108890_1(BC108890|pid:none) Homo sapiens SH3 domain containing... 40 0.24
BC081601_1(BC081601|pid:none) Danio rerio zgc:92124, mRNA (cDNA ... 40 0.24
AB016815_1(AB016815|pid:none) Anthocidaris crassispina mRNA for ... 40 0.24
(P00523) RecName: Full=Proto-oncogene tyrosine-protein kinase Sr... 39 0.32
(P00524) RecName: Full=Tyrosine-protein kinase transforming prot... 39 0.32
(Q6C2N2) RecName: Full=Class E vacuolar protein-sorting machiner... 39 0.32
M57290_3(M57290|pid:none) Chicken non-tyrosin protein kinase (c-... 39 0.32
(Q9V9J3) RecName: Full=Tyrosine-protein kinase Src42A; ... 39 0.32
FN392321_512(FN392321|pid:none) Pichia pastoris GS115 chromosome... 39 0.32
L14782_1(L14782|pid:none) Rattus norvegicus lyn A protein tyrosi... 39 0.32
AL928813_3(AL928813|pid:none) Mouse DNA sequence from clone RP23... 39 0.32
AK153038_1(AK153038|pid:none) Mus musculus bone marrow macrophag... 39 0.32
A39719(A39719;B39719;A39750;B39750) protein-tyrosine kinase (EC ... 39 0.32
M57697_1(M57697|pid:none) Mouse lyn B protein tyrosine kinase (l... 39 0.32
AM920428_1102(AM920428|pid:none) Penicillium chrysogenum Wiscons... 39 0.32
AF000301_1(AF000301|pid:none) Rattus norvegicus Lyn B tyrosine k... 39 0.32
(P14085) RecName: Full=Tyrosine-protein kinase transforming prot... 39 0.32
TVCHS(A00630;I50217;A41256;C35650;A32432)protein-tyrosine kinase... 39 0.32
M57696_1(M57696|pid:none) Mouse lyn A protein tyrosine kinase (l... 39 0.32
L21974_1(L21974|pid:none) Avian sarcoma virus proviral c-src gen... 39 0.32
(Q07014) RecName: Full=Tyrosine-protein kinase Lyn; EC=... 39 0.32
(Q6CVA8) RecName: Full=Class E vacuolar protein-sorting machiner... 39 0.32
(P25911) RecName: Full=Tyrosine-protein kinase Lyn; EC=... 39 0.32
NRL(1PRLC) C-src (sh3 domain) complexed with the proline-rich Li... 39 0.32
BT079404_1(BT079404|pid:none) Esox lucius clone eluc-evq-509-296... 39 0.32
(Q28923) RecName: Full=Proto-oncogene tyrosine-protein kinase Ye... 39 0.41
A34104(A34104;I51564)protein-tyrosine kinase (EC 2.7.1.112) src ... 39 0.41
BC116544_1(BC116544|pid:none) Danio rerio v-src sarcoma (Schmidt... 39 0.41
M77697_5(M77697|pid:none) Caenorhabditis elegans cosmid B0303, c... 39 0.41
BC059394_1(BC059394|pid:none) Homo sapiens v-yes-1 Yamaguchi sar... 39 0.41
AP007169_198(AP007169|pid:none) Aspergillus oryzae RIB40 genomic... 39 0.41
S27788(S27788)neutrophil oxidase homolog - Caenorhabditis elegans 39 0.41
(P00527) RecName: Full=Tyrosine-protein kinase transforming prot... 39 0.41
AY842261_1(AY842261|pid:none) Xenopus tropicalis c-src tyrosine ... 39 0.41
BC110764_1(BC110764|pid:none) Xenopus laevis pp60c-src protein, ... 39 0.41
(P34258) RecName: Full=Uncharacterized protein B0303.7; &M77697... 39 0.41
(P13115) RecName: Full=Tyrosine-protein kinase Src-1; E... 39 0.41
CR382130_454(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 39 0.41
BT045166_1(BT045166|pid:none) Salmo salar clone ssal-rgf-513-373... 39 0.41
V01170_1(V01170|pid:none) Y73 sarcoma virus complete genome, gen... 39 0.41
AJ620750_1(AJ620750|pid:none) Danio rerio mRNA for protein-tyros... 39 0.41
DQ341373_1(DQ341373|pid:none) Siniperca chuatsi p67phox (p67phox... 39 0.41
CP000496_677(CP000496|pid:none) Pichia stipitis CBS 6054 chromos... 39 0.41
BC151348_1(BC151348|pid:none) Bos taurus v-yes-1 Yamaguchi sarco... 39 0.54
CP000499_425(CP000499|pid:none) Pichia stipitis CBS 6054 chromos... 39 0.54
AB037472_1(AB037472|pid:none) Rattus norvegicus mRNA for protein... 39 0.54
AB049592_1(AB049592|pid:none) Ephydatia fluviatilis EfPTK2 mRNA ... 39 0.54
(Q9DDA9) RecName: Full=Protein kinase C and casein kinase substr... 39 0.54
EU120735_1(EU120735|pid:none) Homo sapiens intersectin 1 short f... 39 0.54
AF180522_1(AF180522|pid:none) Homo sapiens intersectin short for... 39 0.54
U61166_1(U61166|pid:none) Human SH3 domain-containing protein SH... 39 0.54
CR857608_1(CR857608|pid:none) Pongo abelii mRNA; cDNA DKFZp469P0... 39 0.54
AK314063_1(AK314063|pid:none) Homo sapiens cDNA, FLJ94729, highl... 39 0.54
BX255904_2(BX255904|pid:none) Zebrafish DNA sequence from clone ... 39 0.54
(P09324) RecName: Full=Tyrosine-protein kinase Yes; EC=... 39 0.54
AY335692_1(AY335692|pid:none) Synthetic construct Homo sapiens v... 39 0.54
(Q04736) RecName: Full=Proto-oncogene tyrosine-protein kinase Ye... 39 0.54
AK035612_1(AK035612|pid:none) Mus musculus adult male urinary bl... 39 0.54
AL008637_4(AL008637|pid:none) Human DNA sequence from clone CTA-... 39 0.54
EU140800_1(EU140800|pid:none) Homo sapiens intersectin 1 short f... 39 0.54
AK052478_1(AK052478|pid:none) Mus musculus 13 days embryo lung c... 39 0.54
DQ679754_1(DQ679754|pid:none) Homo sapiens intersectin 1 short f... 39 0.54
(A5D8S5) RecName: Full=Putative E3 ubiquitin-protein ligase SH3R... 39 0.54
BC141794_1(BC141794|pid:none) Danio rerio SH3 multiple domains 2... 39 0.54
FN392321_1185(FN392321|pid:none) Pichia pastoris GS115 chromosom... 38 0.71
AK304194_1(AK304194|pid:none) Homo sapiens cDNA FLJ61061 complet... 38 0.71
AM270034_5(AM270034|pid:none) Aspergillus niger contig An02c0400... 38 0.71
CU928174_47(CU928174|pid:none) Zygosaccharomyces rouxii strain C... 38 0.71
DQ213312_1(DQ213312|pid:none) Taeniopygia guttata clone 0061P002... 38 0.71
AF081803_1(AF081803|pid:none) Xenopus laevis non-receptor protei... 38 0.71
(P38753) RecName: Full=Class E vacuolar protein-sorting machiner... 38 0.92
(Q8I7C3) RecName: Full=LIM and SH3 domain protein Lasp; &AE0142... 38 0.92
BC051391_1(BC051391|pid:none) Mus musculus myosin IE, mRNA (cDNA... 38 0.92
(P13116) RecName: Full=Tyrosine-protein kinase Src-2; E... 38 0.92
S15582(S15582;S09665)protein-tyrosine kinase (EC 2.7.1.112) src ... 38 0.92
BC153241_1(BC153241|pid:none) Bos taurus protein kinase C and ca... 38 0.92
AJ294538_1(AJ294538|pid:none) Drosophila melanogaster mRNA for L... 38 0.92
(P00526) RecName: Full=Tyrosine-protein kinase transforming prot... 38 0.92
BC108793_1(BC108793|pid:none) Xenopus laevis FYN oncogene relate... 38 0.92
(Q12965) RecName: Full=Myosin-Ie; AltName: Full=Myosin-Ic; &AB2... 38 0.92
(P42683) RecName: Full=Proto-oncogene tyrosine-protein kinase LC... 38 0.92
(A7MBI0) RecName: Full=Protein kinase C and casein kinase substr... 38 0.92
AE014296_2946(AE014296|pid:none) Drosophila melanogaster chromos... 38 0.92
BC098534_1(BC098534|pid:none) Danio rerio FYN oncogene related t... 38 0.92
(P00528) RecName: Full=Tyrosine-protein kinase Src64B; ... 38 0.92
S39768(S39768;S39769)neutrophil cytosol factor p40 - human 37 1.2
BC128665_1(BC128665|pid:none) Xenopus laevis cDNA clone MGC:1542... 37 1.2
(P42522) RecName: Full=Myosin IC heavy chain; 37 1.2
CU104776_2(CU104776|pid:none) Zebrafish DNA sequence from clone ... 37 1.2
(Q9BY11) RecName: Full=Protein kinase C and casein kinase substr... 37 1.2
AF139493_1(AF139493|pid:none) Rattus norvegicus syndapin IIab mR... 37 1.2
BX255972_4(BX255972|pid:none) Human DNA sequence from clone RP11... 37 1.2
(P27446) RecName: Full=Proto-oncogene tyrosine-protein kinase FY... 37 1.2
(Q9WVE8) RecName: Full=Protein kinase C and casein kinase substr... 37 1.2
CU928173_105(CU928173|pid:none) Zygosaccharomyces rouxii strain ... 37 1.2
AF269145_1(AF269145|pid:none) Danio rerio c-fyn protein tyrosine... 37 1.2
BC081616_1(BC081616|pid:none) Danio rerio Yes-relayed kinase, mR... 37 1.2
L35323_1(L35323|pid:none) Dictyostelium discoideum myosin IC (my... 37 1.2
FN376313_10(FN376313|pid:none) Schistosoma mansoni genome sequen... 37 1.2
AK158686_1(AK158686|pid:none) Mus musculus visual cortex cDNA, R... 37 1.2
BC085213_1(BC085213|pid:none) Xenopus laevis hypothetical LOC495... 37 1.2
(Q9Z0W5) RecName: Full=Protein kinase C and casein kinase substr... 37 1.2
AL392107_2(AL392107|pid:none) Human DNA sequence from clone RP11... 37 1.2
BC075763_1(BC075763|pid:none) Danio rerio FYN oncogene related t... 37 1.2
AK083414_1(AK083414|pid:none) Mus musculus 9 days embryo whole b... 37 1.2
AF139494_1(AF139494|pid:none) Rattus norvegicus syndapin IIba mR... 37 1.2
BC057707_1(BC057707|pid:none) Xenopus laevis proto-oncogene tyro... 37 1.6
(P05480) RecName: Full=Neuronal proto-oncogene tyrosine-protein ... 37 1.6
BC089654_1(BC089654|pid:none) Xenopus tropicalis MGC107870 prote... 37 1.6
CR926293_1(CR926293|pid:none) Xenopus tropicalis finished cDNA, ... 37 1.6
A45501(A45501;S08517)protein-tyrosine kinase (EC 2.7.1.112) yes ... 37 1.6
AY398419_1(AY398419|pid:none) Danio rerio clone RK101A1F07 SH3-d... 37 1.6
AE016817_113(AE016817|pid:none) Ashbya gossypii (= Eremothecium ... 37 1.6
AP007151_1206(AP007151|pid:none) Aspergillus oryzae RIB40 genomi... 37 1.6
AL133293_1(AL133293|pid:none) Human DNA sequence from clone RP5-... 37 1.6
BC124443_1(BC124443|pid:none) Danio rerio zgc:153739, mRNA (cDNA... 37 1.6
AJ720258_1(AJ720258|pid:none) Gallus gallus partial mRNA for hyp... 37 1.6
EU269037_1(EU269037|pid:none) Apteronotus leptorhynchus Fyn tyro... 37 1.6
AF157016_1(AF157016|pid:none) Rattus norvegicus neuronal C-SRC t... 37 1.6
AL807371_6(AL807371|pid:none) Neurospora crassa DNA linkage grou... 37 1.6
BC100228_1(BC100228|pid:none) Xenopus laevis hypothetical protei... 37 1.6
AJ719465_1(AJ719465|pid:none) Gallus gallus mRNA for hypothetica... 37 1.6
BT045856_1(BT045856|pid:none) Salmo salar clone ssal-rgf-534-332... 37 1.6
BC082510_1(BC082510|pid:none) Xenopus tropicalis v-yes-1 Yamaguc... 37 1.6
BC045483_1(BC045483|pid:none) Danio rerio SH3-domain GRB2-like 3... 37 1.6
(Q75DS3) RecName: Full=Class E vacuolar protein-sorting machiner... 37 1.6
CR382125_164(CR382125|pid:none) Kluyveromyces lactis strain NRRL... 37 2.1
FN392320_158(FN392320|pid:none) Pichia pastoris GS115 chromosome... 36 2.7
AM270369_12(AM270369|pid:none) Aspergillus niger contig An16c017... 36 2.7
AK151363_1(AK151363|pid:none) Mus musculus bone marrow macrophag... 36 2.7
AM270199_78(AM270199|pid:none) Aspergillus niger contig An09c010... 36 2.7
CU633897_205(CU633897|pid:none) Podospora anserina genomic DNA c... 36 2.7
AF420251_1(AF420251|pid:none) Mus musculus abelson interactor 1 ... 36 2.7
AK165924_1(AK165924|pid:none) Mus musculus lung RCB-0558 LLC cDN... 36 2.7
Z70691_9(Z70691|pid:none) S.pombe chromosome I cosmid c25G10. 36 2.7
AJ620749_1(AJ620749|pid:none) Danio rerio mRNA for protein-tyros... 36 2.7
AK167568_1(AK167568|pid:none) Mus musculus 11 days pregnant adul... 36 2.7
AL845257_3(AL845257|pid:none) Mouse DNA sequence from clone RP23... 36 2.7
AB049594_1(AB049594|pid:none) Ephydatia fluviatilis EfPTK45 mRNA... 36 2.7
AL022476_4(AL022476|pid:none) Human DNA sequence from clone RP3-... 36 2.7
AL845257_5(AL845257|pid:none) Mouse DNA sequence from clone RP23... 36 2.7
(O13154) RecName: Full=Protein kinase C and casein kinase substr... 36 2.7
(Q9UNF0) RecName: Full=Protein kinase C and casein kinase substr... 36 2.7
BC129092_1(BC129092|pid:none) Rattus norvegicus abl-interactor 1... 36 2.7
DQ896161_1(DQ896161|pid:none) Synthetic construct Homo sapiens c... 36 2.7
BC079642_1(BC079642|pid:none) Mus musculus abl-interactor 1, mRN... 36 2.7
CR382139_795(CR382139|pid:none) Debaryomyces hansenii strain CBS... 36 3.5
(P17713) RecName: Full=Tyrosine-protein kinase STK; EC=... 36 3.5
BC103355_1(BC103355|pid:none) Bos taurus hematopoietic cell-spec... 36 3.5
AC116330_30(AC116330|pid:none) Dictyostelium discoideum chromoso... 36 3.5
(Q557J6) RecName: Full=Drebrin-like protein; AltName: Full=Actin... 36 3.5
BC154284_1(BC154284|pid:none) Danio rerio zgc:91999, mRNA (cDNA ... 36 3.5
BX005068_1(BX005068|pid:none) Zebrafish DNA sequence from clone ... 36 3.5
(O14302) RecName: Full=Uncharacterized protein C9G1.06c; &CU329... 36 3.5
FJ161083_1(FJ161083|pid:none) Strongylocentrotus purpuratus src ... 36 3.5
AF220364_1(AF220364|pid:none) Drosophila melanogaster Plenty of ... 36 3.5
AY559311_1(AY559311|pid:none) Suberites domuncula Src tyrosine k... 35 4.6
CR382130_894(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 35 4.6
(Q99JB8) RecName: Full=Protein kinase C and casein kinase II sub... 35 4.6
(Q54WZ5) RecName: Full=Probable inactive serine/threonine-protei... 35 4.6
(Q9UKS6) RecName: Full=Protein kinase C and casein kinase substr... 35 4.6
CU928166_89(CU928166|pid:none) Kluyveromyces thermotolerans stra... 35 4.6
CU928174_167(CU928174|pid:none) Zygosaccharomyces rouxii strain ... 35 4.6
BC095864_1(BC095864|pid:none) Danio rerio zgc:113078, mRNA (cDNA... 35 4.6
BX649457_1(BX649457|pid:none) Zebrafish DNA sequence from clone ... 35 4.6
FM992690_455(FM992690|pid:none) Candida dubliniensis CD36 chromo... 35 4.6
AY858802_1(AY858802|pid:none) Rattus norvegicus syndapin III (Sd... 35 4.6
AB003358_1(AB003358|pid:none) Xenopus laevis mRNA for Lyn protei... 35 4.6
(A1Y2K1) RecName: Full=Proto-oncogene tyrosine-protein kinase Fy... 35 6.0
PDBF(1A0N)B MOL_ID: 1; MOLECULE: PRO-PRO-ARG-PRO-LEU-PRO-VAL-ALA... 35 6.0
AK156584_1(AK156584|pid:none) Mus musculus activated spleen cDNA... 35 6.0
D10652_4(D10652|pid:none) Rous sarcoma virus - Schmidt-Ruppin D ... 35 6.0
U23515_8(U23515|pid:none) Caenorhabditis elegans cosmid R144, co... 35 6.0
(A0JNB0) RecName: Full=Proto-oncogene tyrosine-protein kinase Fy... 35 6.0
(P39688) RecName: Full=Proto-oncogene tyrosine-protein kinase Fy... 35 6.0
S74774_1(S74774|pid:none) p59fyn(T)=OKT3-induced calcium influx ... 35 6.0
S52313(S52313) protein-tyrosine kinase (EC 2.7.1.112) src - Rous... 35 6.0
AJ320183_1(AJ320183|pid:none) Hylobates sp. mRNA for fyn protein... 35 6.0
AK298696_1(AK298696|pid:none) Homo sapiens cDNA FLJ59379 complet... 35 6.0
S31926(S31926) myosin IB heavy chain, brush border - chicken &X... 35 6.0
BC079081_1(BC079081|pid:none) Rattus norvegicus hematopoietic ce... 35 6.0
Z68338_8(Z68338|pid:none) Caenorhabditis elegans Cosmid T24B8, c... 35 6.0
(P63185) RecName: Full=Tyrosine-protein kinase transforming prot... 35 6.0
M14676_1(M14676|pid:none) Human src-like kinase (slk) mRNA, comp... 35 6.0
CU928165_305(CU928165|pid:none) Kluyveromyces thermotolerans str... 35 6.0
AF052428_4(AF052428|pid:none) Rous sarcoma virus strain Schmidt-... 35 6.0
BC032149_1(BC032149|pid:none) Mus musculus Fyn proto-oncogene, m... 35 6.0
CP000496_452(CP000496|pid:none) Pichia stipitis CBS 6054 chromos... 35 6.0
NRL(1SHFA) Fyn proto-oncogene tyrosine kinase (EC 2.7.1.112) (sh... 35 6.0
DQ836056_1(DQ836056|pid:none) Sus scrofa FYN oncogene transcript... 35 6.0
(Q62844) RecName: Full=Proto-oncogene tyrosine-protein kinase Fy... 35 6.0
L29199_2(L29199|pid:none) Rous sarcoma virus (Schmidt-Ruppin A) ... 35 6.0
FJ436398_1(FJ436398|pid:none) Sus scrofa lymphocyte-specific pro... 35 6.0
X05027_1(X05027|pid:none) Human T cell-specific mRNA (YT16) for ... 35 7.8
AK289896_1(AK289896|pid:none) Homo sapiens cDNA FLJ77650 complet... 35 7.8
AY518774_1(AY518774|pid:none) Asterina miniata Src family tyrosi... 35 7.8
AJ865079_1(AJ865079|pid:none) Homo sapiens mRNA for proto-oncoge... 35 7.8
AY335586_1(AY335586|pid:none) Synthetic construct Homo sapiens l... 35 7.8
AK303073_1(AK303073|pid:none) Homo sapiens cDNA FLJ56184 complet... 35 7.8
(Q5PXS1) RecName: Full=Proto-oncogene tyrosine-protein kinase LC... 35 7.8
BC045134_1(BC045134|pid:none) Xenopus laevis tyrosine protein ki... 35 7.8
AY452132_1(AY452132|pid:none) Synthetic construct scTCR-Cbeta-28... 35 7.8
BC056035_1(BC056035|pid:none) Xenopus laevis hypothetical protei... 35 7.8
(Q9NYT8) RecName: Full=Proto-oncogene tyrosine-protein kinase LC... 35 7.8
(Q01621) RecName: Full=Proto-oncogene tyrosine-protein kinase LC... 35 7.8
BC102046_1(BC102046|pid:none) Bos taurus lymphocyte-specific pro... 35 7.8
AJ310436_1(AJ310436|pid:none) Platichthys flesus partial mRNA fo... 35 7.8
(P06240) RecName: Full=Proto-oncogene tyrosine-protein kinase LC... 35 7.8
BC013200_1(BC013200|pid:none) Homo sapiens lymphocyte-specific p... 35 7.8
(Q95KR7) RecName: Full=Proto-oncogene tyrosine-protein kinase LC... 35 7.8
AY452128_1(AY452128|pid:none) Synthetic construct scTCR-Zeta-28-... 35 7.8

>EF134956_1(EF134956|pid:none) Lampetra fluviatilis intersectin mRNA,
partial cds.
Length = 591

Score = 55.5 bits (132), Expect = 4e-06
Identities = 27/49 (55%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Frame = +3

Query: 1152 VALYEYSSNEPGDINFKAGQNIDIISVEGDWSTGRIE---GVFPTNYTK 1289
VALY Y S EPGD+ F G I + EGDW TG+IE GVFP+NY +
Sbjct: 374 VALYAYESGEPGDLTFAQGDVIVVTRREGDWWTGQIEGRSGVFPSNYVR 422

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,253,317,725
Number of extensions: 18207570
Number of successful extensions: 58217
Number of sequences better than 10.0: 336
Number of HSP's gapped: 57758
Number of HSP's successfully gapped: 368
Length of query: 436
Length of database: 1,051,180,864
Length adjustment: 132
Effective length of query: 304
Effective length of database: 623,955,076
Effective search space: 189682343104
Effective search space used: 189682343104
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.82 gvh: 0.26 alm: 0.55 top: 0.53 tms: 0.00 mit: 0.38 mip: 0.35
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: mitochondrial
40.0 %: nuclear
8.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for Contig-U14179-1 is mit

VS (DIR, S) 2
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 3
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 2
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0