Contig-U14168-1
Contig ID Contig-U14168-1
Contig update 2002.12.18
Contig sequence
>Contig-U14168-1 (Contig-U14168-1Q) /CSM_Contig/Contig-U14168-1Q.Seq.d
ATTCTCCAATTTGTGTGCCATCAATATATTTATATATTTTTTTTTTCTTT
ATACTTTTTTTATTTTTTATTAATCAATTAGCTTTTAAATCTACTATTAG
ATATTTATATCAATAACAAATAATAAACAACAAACAACAACAACAAACAG
AACAAGAAGAACAACAATAACAACAGCAACAATATTATAATACACACATA
AAAACACAGAGGAAAAATGAATAATAATAATAAGATATTTCAATTTAAAC
TTGTATTATTGGGCGAAGCAGCCGTAGGCAAAAGTTCTTTAGTATTGAGA
TTTGTTCGTGGACACTTTTTAGATTATCAAGAAAGTACTATAGGTGCTGC
ATTTTTAGCACAAACAGTTTGTTTAAATGATACTACAGTTAAATTTGAAA
TTTGGGATACAGCTGGTCAAGAACGTTATCATACATTAGCACCAATGTAT
TATCGTGGTGCACAAGCAGCAATCGTTGTTTATGATATTAGAAGTGAAGA
TTCATTCGAAAGAGCAATCAAATGGGTTAAAGAATTACAAAGACAAGGTA
GTCCAAATATTGTTATAGCATTAGCAGGTAATAAATTAGATCTTGCTGCT
AAACGTAAAGTTGAAACAGCTGAAGCACAACAATATGCCGAAGAAAATGG
ACTTCTTTTTATGGAAACATCAGCCAAAACATCACAAAATGTAAATGAAC
TTTTTGTAGAGATTGCTAAAAAAACTTCCCAAAACCCCAACCACTTGACC
AGGTTCAGGAAGGGTTGCAATTGCTCCAATAGATAATGGTAACACTGGAA
AGAAAAACAAATGTTGTAACTAATAAAATAATAAAAAACCACAATATAAT
AATTTTTAACAAAAACCCATCAAAAAAAAAAAAAAAAAACAACATAACAT
AAAATAACATAACACAAACAACAAACTCAATACATTTAAAAAACAACTCA
AACACCTATGCATAACTTCAACATCAACATCAACATCAACAATAATCAAC
TAAAAACACACATAATTTATTAAACAAAATAAAAAAAAAAAAAAATCCAG
AAAAAAATAAAAAATAAAAAAAATAAAAACTAAAATCAAAACACAAACGA
TCGATAGTCAGTACCACTATCTACATTTTTAAAAAAGATCTCCTTTCCAT
CTTTTTTATCTTTAAAAAAAAAAAAAAAAAA

Gap no gap
Contig length 1181
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 1091788
End point 1092924
Strand (PLUS/MINUS) PLUS
Number of clones 18
Number of EST 21
Link to clone list U14168
List of clone(s)

est1=SFE445F,1,156
est2=VFI464F,1,175
est3=SSJ211F,2,615
est4=CFA754E,69,692
est5=CFH437E,113,695
est6=SFG815Z,117,710
est7=CHD222Z,127,695
est8=VFH532F,147,408
est9=SFE652Z,173,696
est10=VFI464Z,178,696
est11=SFF812Z,179,688
est12=SFF384Z,189,611
est13=SSA774E,189,1098
est14=VSB109Z,214,871
est15=SFF720Z,216,688
est16=CFG350Z,273,695
est17=SFE445Z,275,806
est18=VSC545Z,293,871
est19=SFC861Z,313,679
est20=CFD839Z,414,700
est21=SSJ211Z,711,1182
Translated Amino Acid sequence
ilqfvchqyiyifffslyffyfllin*llnllldiyinnk**ttnnnnkqnkknnnnnsn
niiiht*KHRGKMNNNNKIFQFKLVLLGEAAVGKSSLVLRFVRGHFLDYQESTIGAAFLA
QTVCLNDTTVKFEIWDTAGQERYHTLAPMYYRGAQAAIVVYDIRSEDSFERAIKWVKELQ
RQGSPNIVIALAGNKLDLAAKRKVETAEAQQYAEENGLLFMETSAKTSQNVNELFVEIAK
KTSQNPNHLTRFRKGCNCSNR*w*hwkekqml*lik**ktti**fltkthqkkkkktt*h
kit*hkqqtqyi*kttqtpmhnfninininnnqlkthiiy*tk*kkkkiqkkiknkknkn
*nqntndr*svplstflkkisfpsflslkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
ilqfvchqyiyifffslyffyfllin*llnllldiyinnk**ttnnnnkqnkknnnnnsn
niiiht*KHRGKMNNNNKIFQFKLVLLGEAAVGKSSLVLRFVRGHFLDYQESTIGAAFLA
QTVCLNDTTVKFEIWDTAGQERYHTLAPMYYRGAQAAIVVYDIRSEDSFERAIKWVKELQ
RQGSPNIVIALAGNKLDLAAKRKVETAEAQQYAEENGLLFMETSAKTSQNVNELFVEIAK
KTSQNPNHLTRFRKGCNCSNR*w*hwkekqml*lik**ktti**fltkthqkkkkktt*h
kit*hkqqtqyi*kttqtpmhnfninininnnqlkthiiy*tk*kkkkiqkkiknkknkn
*nqntndr*svplstflkkisfpsflslkkkkk


Frame B:
fsnlcainifiyffflytffify*sisf*iyy*ifisitnnkqqttttnrtrrttittat
il*ythknteek*iiiiryfnlnlyywakqp*akvl*y*dlfvdtf*iikkvl*vlhf*h
kqfv*milqlnlkfgiqlvknviih*hqciivvhkqqslfmilevkihskeqsnglknyk
dkvvqill*h*qvin*illlnvklkqlkhnnmpkkmdfflwkhqpkhhkm*mnfl*rllk
klpktptt*pgsgrvaiapidngntgkknkccn**nnkkpqynnf*qkpikkkkkkqhni
k*hntnnklntfkkqlkhlcitststststiin*kht*fikqnkkkkksrkk*kikkikt
kiktqtidsqyhylhf*krspfhlfyl*kkkkk


Frame C:
spicvpsiylyiffffilflffinqlafkstirylyq*qiinnkqqqqteqeeqq*qqqq
yynthiktqrkne****disi*tciigrssrrqkffsieicswtlfrlsrkyyrccifst
nslfk*yys*i*nlgyswsrtlsyistnvlswctssnrcl*y*k*rfirksnqmg*ritk
tr*skycysisr**irscc*t*s*ns*stticrrkwtsfygnisqnitkck*tfcrdc*k
nfpkpqpldqvqeglqllq*imvtlerktnvvtnkiiknhniiifnknpskkkkknnit*
nnitqttnsihlknnsntya*lqhqhqhqq*stknthnllnkikkkknpeknkk*kk*kl
kskhkrsivsttiyifkkdllsiffifkkkkkk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U14168-1 (Contig-U14168-1Q)
/CSM_Contig/Contig-U14168-1Q.Seq.d
(1181 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U14168-1 (Contig-U14168-1Q) /CSM_Contig/Conti... 1179 0.0
Contig-U00451-1 (Contig-U00451-1Q) /CSM_Contig/Conti... 50 6e-06
Contig-U12950-1 (Contig-U12950-1Q) /CSM_Contig/Conti... 48 2e-05
Contig-U11908-1 (Contig-U11908-1Q) /CSM_Contig/Conti... 48 2e-05
Contig-U10756-1 (Contig-U10756-1Q) /CSM_Contig/Conti... 48 2e-05
Contig-U10723-1 (Contig-U10723-1Q) /CSM_Contig/Conti... 48 2e-05
Contig-U09903-1 (Contig-U09903-1Q) /CSM_Contig/Conti... 48 2e-05
Contig-U12510-1 (Contig-U12510-1Q) /CSM_Contig/Conti... 44 3e-04
Contig-U11487-1 (Contig-U11487-1Q) /CSM_Contig/Conti... 44 3e-04
Contig-U14766-1 (Contig-U14766-1Q) /CSM_Contig/Conti... 42 0.001

>Contig-U14168-1 (Contig-U14168-1Q) /CSM_Contig/Contig-U14168-1Q.Seq.d
Length = 1181

Score = 1180 bits (595), Expect = 0.0
Identities = 609/616 (98%)
Strand = Plus / Plus


Query: 183 tattataatacacacataaaaacacagaggaaaaatgaataataataataagatatttca 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 tattataatacacacataaaaacacagaggaaaaatgaataataataataagatatttca 242


Query: 243 atttaaacttgtattattgggcgaagcagccgtaggcaaaagttctttagtattgagatt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 atttaaacttgtattattgggcgaagcagccgtaggcaaaagttctttagtattgagatt 302


Query: 303 tgttcgtggacactttttagattatcaagaaagtactataggtgctgcatttttagcaca 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tgttcgtggacactttttagattatcaagaaagtactataggtgctgcatttttagcaca 362


Query: 363 aacagtttgtttaaatgatactacagttaaatttgaaatttgggatacagctggtcaaga 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 aacagtttgtttaaatgatactacagttaaatttgaaatttgggatacagctggtcaaga 422


Query: 423 acgttatcatacattagcaccaatgtattatcgtggtgcacaagcagcaatcgttgttta 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 acgttatcatacattagcaccaatgtattatcgtggtgcacaagcagcaatcgttgttta 482


Query: 483 tgatattagaagtgaagattcattcgaaagagcaatcaaatgggttaaagaattacaaag 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tgatattagaagtgaagattcattcgaaagagcaatcaaatgggttaaagaattacaaag 542


Query: 543 acaaggtagtccaaatattgttatagcattagcaggtaataaattagatcttgctgctaa 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 acaaggtagtccaaatattgttatagcattagcaggtaataaattagatcttgctgctaa 602


Query: 603 acgtaaagttgaaacagctgaagcacaacaatatgccgaagaaaatggacttctttttat 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 acgtaaagttgaaacagctgaagcacaacaatatgccgaagaaaatggacttctttttat 662


Query: 663 ggaaacatcagccaaaacatcacaaaatgtaaatgaactttttgtagagattgctnnnnn 722
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ggaaacatcagccaaaacatcacaaaatgtaaatgaactttttgtagagattgctaaaaa 722


Query: 723 nncttcccaaaaccccaaccacttgaccaggttcaggaagggttgcaattgctccaatag 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 aacttcccaaaaccccaaccacttgaccaggttcaggaagggttgcaattgctccaatag 782


Query: 783 ataatggtaacactgg 798
||||||||||||||||
Sbjct: 783 ataatggtaacactgg 798


Score = 155 bits (78), Expect = 1e-37
Identities = 78/78 (100%)
Strand = Plus / Plus


Query: 948 tcaaacacctatgcataacttcaacatcaacatcaacatcaacaataatcaactaaaaac 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948 tcaaacacctatgcataacttcaacatcaacatcaacatcaacaataatcaactaaaaac 1007


Query: 1008 acacataatttattaaac 1025
||||||||||||||||||
Sbjct: 1008 acacataatttattaaac 1025


Score = 143 bits (72), Expect = 5e-34
Identities = 72/72 (100%)
Strand = Plus / Plus


Query: 1092 cacaaacgatcgatagtcagtaccactatctacatttttaaaaaagatctcctttccatc 1151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1092 cacaaacgatcgatagtcagtaccactatctacatttttaaaaaagatctcctttccatc 1151


Query: 1152 ttttttatcttt 1163
||||||||||||
Sbjct: 1152 ttttttatcttt 1163


Score = 83.8 bits (42), Expect = 4e-16
Identities = 42/42 (100%)
Strand = Plus / Plus


Query: 69 attaatcaattagcttttaaatctactattagatatttatat 110
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 attaatcaattagcttttaaatctactattagatatttatat 110


Score = 71.9 bits (36), Expect = 2e-12
Identities = 36/36 (100%)
Strand = Plus / Plus


Query: 1 attctccaatttgtgtgccatcaatatatttatata 36
||||||||||||||||||||||||||||||||||||
Sbjct: 1 attctccaatttgtgtgccatcaatatatttatata 36


Score = 40.1 bits (20), Expect = 0.005
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 852 atttttaacaaaaacccatc 871
||||||||||||||||||||
Sbjct: 852 atttttaacaaaaacccatc 871


>Contig-U00451-1 (Contig-U00451-1Q) /CSM_Contig/Contig-U00451-1Q.Seq.d
Length = 1253

Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus


Query: 968 tcaacatcaacatcaacatcaacaa 992
|||||||||||||||||||||||||
Sbjct: 1085 tcaacatcaacatcaacatcaacaa 1109


Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus


Query: 969 caacatcaacatcaacatcaaca 991
|||||||||||||||||||||||
Sbjct: 1080 caacatcaacatcaacatcaaca 1102


Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus


Query: 968 tcaacatcaacatcaacatcaacaa 992
|||||||||||||||||| ||||||
Sbjct: 1091 tcaacatcaacatcaacaacaacaa 1115


>Contig-U12950-1 (Contig-U12950-1Q) /CSM_Contig/Contig-U12950-1Q.Seq.d
Length = 320

Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus


Query: 968 tcaacatcaacatcaacatcaaca 991
||||||||||||||||||||||||
Sbjct: 283 tcaacatcaacatcaacatcaaca 306


Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus


Query: 968 tcaacatcaacatcaacatcaaca 991
||||||||||||||||||||||||
Sbjct: 289 tcaacatcaacatcaacatcaaca 312


Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus


Query: 968 tcaacatcaacatcaacatcaacaa 992
|||||||||||||||||| ||||||
Sbjct: 295 tcaacatcaacatcaacaccaacaa 319


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 27,282
Number of Sequences: 6905
Number of extensions: 27282
Number of successful extensions: 10020
Number of sequences better than 10.0: 387
length of query: 1181
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1165
effective length of database: 5,564,391
effective search space: 6482515515
effective search space used: 6482515515
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.18
Homology vs DNA
Query= Contig-U14168-1 (Contig-U14168-1Q) /CSM_Contig/Contig-U14168-1Q.Seq.d
(1181 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU261821) Dictyostelium discoideum vegetative cDNA clone:VS... 999 0.0 2
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 420 0.0 7
(BJ400656) Dictyostelium discoideum cDNA clone:dds14n04, 3' ... 991 0.0 1
(BJ432121) Dictyostelium discoideum cDNA clone:ddv17p16, 3' ... 963 0.0 1
(BJ397998) Dictyostelium discoideum cDNA clone:dds10g14, 3' ... 950 0.0 1
(BJ400236) Dictyostelium discoideum cDNA clone:dds9j12, 3' e... 878 0.0 2
(BJ376344) Dictyostelium discoideum cDNA clone:ddc28k06, 3' ... 932 0.0 1
(BJ398345) Dictyostelium discoideum cDNA clone:dds12h05, 3' ... 930 0.0 1
(BJ398344) Dictyostelium discoideum cDNA clone:dds12h04, 3' ... 928 0.0 1
(BJ373020) Dictyostelium discoideum cDNA clone:ddc15j10, 3' ... 924 0.0 1
(AU262636) Dictyostelium discoideum vegetative cDNA clone:VS... 833 0.0 2
(BJ373305) Dictyostelium discoideum cDNA clone:ddc2l13, 3' e... 591 0.0 3
(BJ372644) Dictyostelium discoideum cDNA clone:ddc13d13, 3' ... 821 0.0 1
(AU037027) Dictyostelium discoideum slug cDNA, clone SSA774. 444 0.0 9
(BJ398289) Dictyostelium discoideum cDNA clone:dds11h21, 3' ... 761 0.0 1
(BJ399588) Dictyostelium discoideum cDNA clone:dds6j16, 3' e... 694 0.0 1
(BJ359811) Dictyostelium discoideum cDNA clone:ddc2l13, 5' e... 529 0.0 3
(BJ374527) Dictyostelium discoideum cDNA clone:ddc8n10, 3' e... 553 e-153 1
(BJ413634) Dictyostelium discoideum cDNA clone:ddv16o07, 5' ... 343 9e-90 1
(EH015459) USDA-FP_182406 Lysiphlebus testaceipes adult whol... 214 2e-66 2
(C90837) Dictyostelium discoideum slug cDNA, clone SSJ211. 143 2e-64 3
(AY160096) Dictyostelium discoideum nucleotide exchange fact... 137 3e-57 3
(BI507335) BB170003A20A10.5 Bee Brain Normalized/Subtracted ... 159 5e-42 2
(BI504037) BB170029B20A11.5 Bee Brain Normalized/Subtracted ... 159 5e-42 2
(BI507360) BB170006B10A10.5 Bee Brain Normalized/Subtracted ... 159 5e-42 2
(DC448197) Gryllus bimaculatus mRNA, clone:GBpAP010_N02, uns... 92 3e-38 4
(BJ359562) Dictyostelium discoideum cDNA clone:ddc15j10, 5' ... 170 8e-38 1
(DC442388) Gryllus bimaculatus mRNA, clone:GB00364-42_G01, 5... 92 2e-35 4
(CV181104) tai68h01.y2 Hydra EST UCI 5 ALP Hydra magnipapill... 125 3e-33 2
(CN558848) tad76h02.y1 Hydra EST Darmstadt I Hydra magnipapi... 125 4e-33 2
(CF777271) tad08c12.y1 Hydra EST -IV Hydra magnipapillata cD... 125 4e-33 2
(CF601565) tac31b04.y1 Hydra EST -IV Hydra magnipapillata cD... 125 4e-33 2
(DN244745) ACAE-aaa23c22.g1 Hydra EST UCI 5 Hydra magnipapil... 125 4e-33 2
(DN137801) ACAE-aaa09j08.g1 Hydra EST UCI 5 Hydra magnipapil... 125 4e-33 2
(DT621130) ACAH-aaa63h11.g1 Hydra_EST_UCI-10 Hydra magnipapi... 125 4e-33 2
(CX056202) tai96e12.y2 Hydra EST UCI 5 ALP Hydra magnipapill... 125 4e-33 2
(EY187162) 1_D12_SEQ_SQ1300_08 Microctonus hyperodae venom c... 82 2e-31 3
(EY187561) 1_G09_SEQ_SQ1303_13 Microctonus hyperodae venom c... 82 2e-31 3
(BG661487) kx02e06.y1 Parastrongyloides trichosuri IL SL1 TO... 100 1e-29 2
(AA048654) mj33e03.r1 Soares mouse embryo NbME13.5 14.5 Mus ... 111 7e-28 3
(CG643179) OST381336 Mus musculus 129Sv/Ev Mus musculus cDNA... 111 8e-28 3
(AA144376) mr15c10.r1 Soares mouse 3NbMS Mus musculus cDNA c... 111 8e-28 3
(DD013640) METHOD FOR EXAMINING ISCHEMIC CONDITIONS. 111 9e-28 3
(AX305550) Sequence 301 from Patent WO0188188. 111 9e-28 3
(W89699) mf79h10.r1 Soares mouse embryo NbME13.5 14.5 Mus mu... 111 9e-28 3
(BM125693) id74b03.y1 Melton Normalized Mixed Mouse Pancreas... 111 9e-28 3
(CK333301) H8237F10-5 NIA Mouse Unique Gene Set Version 2 Mu... 111 1e-27 3
(CK333276) H8236F10-5 NIA Mouse Unique Gene Set Version 2 Mu... 111 1e-27 3
(CK616707) ou24f04.y1 Mouse lacrimal gland, unamplified: ou ... 111 1e-27 3
(AB232593) Mus musculus mRNA for Rab5A, complete cds. 111 1e-27 3
(CF169497) B0814E07-5 NIA Mouse Newborn Kidney cDNA Library ... 111 1e-27 3
(CD807672) UI-M-GW0-cip-b-12-0-UI.r1 NIH_BMAP_GW0 Mus muscul... 111 1e-27 3
(BI652456) 603299542F1 NCI_CGAP_Mam3 Mus musculus cDNA clone... 111 1e-27 3
(CD354459) UI-M-GM0-cgd-e-10-0-UI.r1 NIH_BMAP_GM0 Mus muscul... 111 2e-27 3
(AA824008) vq93f09.r1 Knowles Solter mouse blastocyst B3 Mus... 111 2e-27 3
(BG292781) 602389467F1 NIH_MGC_94 Mus musculus cDNA clone IM... 111 3e-27 3
(BJ414002) Dictyostelium discoideum cDNA clone:ddv17p16, 5' ... 84 3e-27 2
(BJ388401) Dictyostelium discoideum cDNA clone:dds9j12, 5' e... 84 3e-27 2
(AK008198) Mus musculus adult male small intestine cDNA, RIK... 111 4e-27 3
(BQ938862) AGENCOURT_8949616 NCI_CGAP_Co24 Mus musculus cDNA... 111 9e-27 3
(BC034370) Mus musculus RAB5A, member RAS oncogene family, m... 111 1e-26 3
(AK076093) Mus musculus 10, 11 days embryo whole body cDNA, ... 111 1e-26 3
(AK159706) Mus musculus osteoclast-like cell cDNA, RIKEN ful... 111 1e-26 3
(AK150346) Mus musculus bone marrow macrophage cDNA, RIKEN f... 111 1e-26 3
(AK153131) Mus musculus bone marrow macrophage cDNA, RIKEN f... 111 1e-26 3
(AK151066) Mus musculus bone marrow macrophage cDNA, RIKEN f... 111 1e-26 3
(AK150296) Mus musculus bone marrow macrophage cDNA, RIKEN f... 111 1e-26 3
(AK150405) Mus musculus bone marrow macrophage cDNA, RIKEN f... 111 1e-26 3
(AK010495) Mus musculus ES cells cDNA, RIKEN full-length enr... 111 1e-26 3
(BC004842) Mus musculus RAB5A, member RAS oncogene family, m... 111 1e-26 3
(BC096481) Mus musculus RAB5A, member RAS oncogene family, m... 111 1e-26 3
(AK081999) Mus musculus 16 days embryo head cDNA, RIKEN full... 111 2e-26 3
(BQ887682) AGENCOURT_8765354 NIH_MGC_129 Mus musculus cDNA c... 111 2e-25 2
(CX759983) AGENCOURT_41351992 NIH_MGC_278 Homo sapiens cDNA ... 111 2e-25 2
(BI158375) 602921068F1 NCI_CGAP_Mam3 Mus musculus cDNA clone... 111 2e-25 2
(BY708856) Mus musculus adult male stomach cDNA, RIKEN full-... 111 2e-25 2
(BY708152) Mus musculus adult male small intestine cDNA, RIK... 111 2e-25 2
(CN707494) E0533A01-5 NIA Mouse eight-cell-Embryo cDNA libra... 111 2e-25 2
(CN714592) E0638F05-5 NIA Mouse eight-cell-Embryo cDNA libra... 111 2e-25 2
(CG649196) OST403968 Mus musculus 129Sv/Ev Mus musculus cDNA... 111 2e-25 2
(CG622071) OST321195 Mus musculus 129Sv/Ev Mus musculus cDNA... 111 2e-25 2
(CK338366) C0629D01-5N NIA Mouse Trophoblast Stem Cell cDNA ... 111 2e-25 3
(DN292474) PL030010B20F06 cDNA from sexually mature hermapho... 127 1e-24 1
(AK002631) Mus musculus adult male kidney cDNA, RIKEN full-l... 111 3e-24 3
(AC131785) Mus musculus BAC clone RP24-397D13 from chromosom... 111 6e-24 4
(CG558780) OST176719 Mus musculus 129Sv/Ev Mus musculus cDNA... 111 1e-23 2
(BY703138) Mus musculus adult male kidney cDNA, RIKEN full-l... 111 4e-23 2
(CX225382) MBM00816 Mus Musculus hematopoietic BM-HPC5 cDNA ... 103 4e-23 2
(AA789672) vw62e07.r1 Soares_mammary_gland_NMLMG Mus musculu... 111 4e-23 2
(AC165960) Mus musculus BAC clone RP23-395M20 from chromosom... 111 8e-23 3
(FK218194) XABT222342.b1 Gateway compatible cien cDNA librar... 62 1e-22 4
(FF697167) XABT107635.fwd Gateway compatible cien cDNA libra... 62 1e-22 4
(DW014391) w8c4_M13F Myzus persicae, tobacco lineage, whole ... 119 2e-22 2
(CG655882) OST427098 Mus musculus 129Sv/Ev Mus musculus cDNA... 105 6e-22 2
(AF072935) Rattus norvegicus small GTP-binding protein rab5 ... 92 8e-22 3
(DJ005498) Primary rat hepatocyte toxicity modeling. 92 8e-22 3
(DD270096) Molecular Hepatotoxicology Modeling. 92 8e-22 3
(CK365863) AGENCOURT_17152294 NIH_MGC_231 Rattus norvegicus ... 92 1e-21 3
(FK228004) XABT229147.b1 Gateway compatible cien cDNA librar... 54 1e-21 5
(BP013700) Ciona intestinalis cDNA, clone:ciad57p11, 5' end,... 54 1e-21 5

>(AU261821) Dictyostelium discoideum vegetative cDNA clone:VSB109,
3' end single read.
Length = 658

Score = 999 bits (504), Expect(2) = 0.0
Identities = 504/504 (100%)
Strand = Plus / Plus


Query: 214 aaaatgaataataataataagatatttcaatttaaacttgtattattgggcgaagcagcc 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaaatgaataataataataagatatttcaatttaaacttgtattattgggcgaagcagcc 60


Query: 274 gtaggcaaaagttctttagtattgagatttgttcgtggacactttttagattatcaagaa 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtaggcaaaagttctttagtattgagatttgttcgtggacactttttagattatcaagaa 120


Query: 334 agtactataggtgctgcatttttagcacaaacagtttgtttaaatgatactacagttaaa 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agtactataggtgctgcatttttagcacaaacagtttgtttaaatgatactacagttaaa 180


Query: 394 tttgaaatttgggatacagctggtcaagaacgttatcatacattagcaccaatgtattat 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tttgaaatttgggatacagctggtcaagaacgttatcatacattagcaccaatgtattat 240


Query: 454 cgtggtgcacaagcagcaatcgttgtttatgatattagaagtgaagattcattcgaaaga 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cgtggtgcacaagcagcaatcgttgtttatgatattagaagtgaagattcattcgaaaga 300


Query: 514 gcaatcaaatgggttaaagaattacaaagacaaggtagtccaaatattgttatagcatta 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gcaatcaaatgggttaaagaattacaaagacaaggtagtccaaatattgttatagcatta 360


Query: 574 gcaggtaataaattagatcttgctgctaaacgtaaagttgaaacagctgaagcacaacaa 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gcaggtaataaattagatcttgctgctaaacgtaaagttgaaacagctgaagcacaacaa 420


Query: 634 tatgccgaagaaaatggacttctttttatggaaacatcagccaaaacatcacaaaatgta 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tatgccgaagaaaatggacttctttttatggaaacatcagccaaaacatcacaaaatgta 480


Query: 694 aatgaactttttgtagagattgct 717
||||||||||||||||||||||||
Sbjct: 481 aatgaactttttgtagagattgct 504

Score = 107 bits (54), Expect(2) = 0.0
Identities = 69/74 (93%)
Strand = Plus / Plus


Query: 725 cttcccaaaaccccaaccacttgaccaggttcaggaagggttgcaattgctccaatagat 784
||||| ||||| ||||||||| |||||||||||||||| || ||||||||||||||||||
Sbjct: 511 cttccaaaaacaccaaccactagaccaggttcaggaagagtagcaattgctccaatagat 570


Query: 785 aatggtaacactgg 798
||||||||||||||
Sbjct: 571 aatggtaacactgg 584

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 901,936,057
Number of extensions: 62890778
Number of successful extensions: 8089628
Number of sequences better than 10.0: 3895
Length of query: 1181
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1157
Effective length of database: 97,308,875,965
Effective search space: 112586369491505
Effective search space used: 112586369491505
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.10
Homology vs Protein
Query= Contig-U14168-1 (Contig-U14168-1Q) /CSM_Contig/Contig-U14168-1Q.Seq.d
(1181 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q86JP3) RecName: Full=Ras-related protein Rab-5A; &AC115599_18... 334 4e-91
(Q06AU6) RecName: Full=Ras-related protein Rab-5A; &DQ917629_1(... 268 2e-70
(Q58DS9) RecName: Full=Ras-related protein Rab-5C; &BC118226_1(... 268 3e-70
AF072935_1(AF072935|pid:none) Rattus norvegicus small GTP-bindin... 268 3e-70
(Q0IIG7) RecName: Full=Ras-related protein Rab-5A; &BC122651_1(... 268 4e-70
(P18066) RecName: Full=Ras-related protein Rab-5A; &(P61271) Re... 268 4e-70
(P20339) RecName: Full=Ras-related protein Rab-5A; &AF464088_1(... 268 4e-70
I38703(I38703;G01590) ras-related small GTP binding protein Rab5... 267 6e-70
BT044620_1(BT044620|pid:none) Salmo salar clone ssal-rgf-001-033... 267 6e-70
BC158856_1(BC158856|pid:none) Rattus norvegicus RAB5C, member RA... 267 6e-70
AK002631_1(AK002631|pid:none) Mus musculus adult male kidney cDN... 266 1e-69
AK150346_1(AK150346|pid:none) Mus musculus bone marrow macrophag... 266 1e-69
BC080959_1(BC080959|pid:none) Xenopus tropicalis RAB5A, member R... 265 2e-69
(Q98932) RecName: Full=Ras-related protein Rab-5C; AltName: Full... 264 5e-69
BT075523_1(BT075523|pid:none) Osmerus mordax clone omor-rgc-502-... 264 5e-69
BC043866_1(BC043866|pid:none) Xenopus laevis RAB5A, member RAS o... 263 7e-69
BC091014_1(BC091014|pid:none) Xenopus tropicalis muscle RAS onco... 263 7e-69
DQ215564_1(DQ215564|pid:none) Taeniopygia guttata clone 0061P000... 263 9e-69
BC165915_1(BC165915|pid:none) Danio rerio RAB5A, member RAS onco... 263 1e-68
BC047803_1(BC047803|pid:none) Danio rerio RAB5A, member RAS onco... 263 1e-68
BC056058_1(BC056058|pid:none) Xenopus laevis Rab-protein 5, mRNA... 262 2e-68
BC094134_1(BC094134|pid:none) Xenopus laevis cDNA clone MGC:1150... 261 3e-68
BC045466_1(BC045466|pid:none) Danio rerio RAB5C, member RAS onco... 261 3e-68
BC054969_1(BC054969|pid:none) Xenopus laevis hypothetical protei... 261 3e-68
BT078133_1(BT078133|pid:none) Lepeophtheirus salmonis Pacific fo... 261 3e-68
AB035353_1(AB035353|pid:none) Drosophila melanogaster mRNA for D... 260 8e-68
AY893731_1(AY893731|pid:none) Synthetic construct Homo sapiens c... 257 5e-67
(P61020) RecName: Full=Ras-related protein Rab-5B; &(P61021) Re... 257 5e-67
AB232594_1(AB232594|pid:none) Mus musculus mRNA for Rab5B, compl... 257 5e-67
BC040143_1(BC040143|pid:none) Homo sapiens RAB5B, member RAS onc... 257 5e-67
T21442(T21442) hypothetical protein F26H9.6 - Caenorhabditis ele... 257 6e-67
AB172358_1(AB172358|pid:none) Macaca fascicularis brain cDNA clo... 257 6e-67
AK089199_1(AK089199|pid:none) Mus musculus NOD-derived CD11c +ve... 257 6e-67
CR536482_1(CR536482|pid:none) Homo sapiens full open reading fra... 256 1e-66
AL772198_6(AL772198|pid:none) Zebrafish DNA sequence from clone ... 255 2e-66
AJ296336_1(AJ296336|pid:none) Cichorium intybus X Cichorium endi... 240 8e-62
EF144757_1(EF144757|pid:none) Populus trichocarpa clone WS01117_... 239 1e-61
AJ296335_1(AJ296335|pid:none) Cichorium intybus X Cichorium endi... 238 2e-61
S49225(S49225) guanine nucleotide regulatory protein - fava bean... 238 4e-61
CP001325_386(CP001325|pid:none) Micromonas sp. RCC299 chromosome... 237 5e-61
AJ296334_1(AJ296334|pid:none) Cichorium intybus X Cichorium endi... 237 7e-61
AB470337_1(AB470337|pid:none) Periplaneta americana pamRab5 mRNA... 237 7e-61
AM438790_1(AM438790|pid:none) Vitis vinifera contig VV78X074483.... 236 2e-60
BT070338_1(BT070338|pid:none) Picea sitchensis clone WS02721_B05... 236 2e-60
GN080131_1(GN080131|pid:none) Sequence 734 from Patent WO2009027... 235 2e-60
(P31583) RecName: Full=Ras-related protein RHN1; &S20445(S20445... 234 4e-60
BX511265_14(BX511265|pid:none) Zebrafish DNA sequence from clone... 234 6e-60
CS559922_1(CS559922|pid:none) Sequence 509 from Patent WO2006032... 233 8e-60
BT084019_1(BT084019|pid:none) Zea mays full-length cDNA clone ZM... 233 8e-60
AJ292320_1(AJ292320|pid:none) Oryza sativa mRNA for RAB5A protei... 233 1e-59
AC135792_12(AC135792|pid:none) Oryza sativa chromosome 3 BAC OSJ... 232 2e-59
GN080099_1(GN080099|pid:none) Sequence 702 from Patent WO2009027... 232 2e-59
GN080009_1(GN080009|pid:none) Sequence 612 from Patent WO2009027... 232 2e-59
AY029301_1(AY029301|pid:none) Oryza sativa small GTP-binding pro... 231 3e-59
BT033632_1(BT033632|pid:none) Zea mays full-length cDNA clone ZM... 231 3e-59
CR954208_252(CR954208|pid:none) Ostreococcus tauri strain OTTH05... 231 4e-59
CP000588_238(CP000588|pid:none) Ostreococcus lucimarinus CCE9901... 231 5e-59
AC155101_11(AC155101|pid:none) Medicago truncatula clone mth2-13... 231 5e-59
AJ437656_1(AJ437656|pid:none) Simmondsia chinensis mRNA for Rab-... 230 6e-59
AB038491_1(AB038491|pid:none) Arabidopsis thaliana mRNA for Ara7... 230 6e-59
(P31582) RecName: Full=Ras-related protein RHA1; &AB019224_14(A... 229 2e-58
GN080031_1(GN080031|pid:none) Sequence 634 from Patent WO2009027... 228 2e-58
GN105997_1(GN105997|pid:none) Sequence 10778 from Patent WO20090... 227 5e-58
CS559776_1(CS559776|pid:none) Sequence 363 from Patent WO2006032... 226 1e-57
AF112964_1(AF112964|pid:none) Triticum aestivum small GTP-bindin... 224 5e-57
EF672053_1(EF672053|pid:none) Lentinula edodes GTP-binding prote... 222 2e-56
BX842682_19(BX842682|pid:none) Neurospora crassa DNA linkage gro... 220 7e-56
CU633438_179(CU633438|pid:none) Podospora anserina genomic DNA c... 220 9e-56
AM270071_68(AM270071|pid:none) Aspergillus niger contig An04c010... 219 1e-55
FN357390_39(FN357390|pid:none) Schistosoma mansoni genome sequen... 214 6e-54
AK242104_1(AK242104|pid:none) Oryza sativa Japonica Group cDNA, ... 213 1e-53
AF296447_1(AF296447|pid:none) Toxoplasma gondii Rab5 (rab5) mRNA... 212 2e-53
FN357390_40(FN357390|pid:none) Schistosoma mansoni genome sequen... 211 3e-53
AY814575_1(AY814575|pid:none) Schistosoma japonicum SJCHGC09085 ... 211 5e-53
CR382132_1125(CR382132|pid:none) Yarrowia lipolytica strain CLIB... 209 1e-52
AK083034_1(AK083034|pid:none) Mus musculus 12 days embryo spinal... 209 2e-52
AL772198_7(AL772198|pid:none) Zebrafish DNA sequence from clone ... 208 3e-52
GN106083_1(GN106083|pid:none) Sequence 10864 from Patent WO20090... 207 4e-52
GN106041_1(GN106041|pid:none) Sequence 10822 from Patent WO20090... 207 4e-52
Z73939_1(Z73939|pid:none) L.japonicus mRNA for small GTP-binding... 206 1e-51
EF148276_1(EF148276|pid:none) Populus trichocarpa x Populus delt... 206 1e-51
GN106115_1(GN106115|pid:none) Sequence 10896 from Patent WO20090... 206 1e-51
CR940347_597(CR940347|pid:none) Theileria annulata strain Ankara... 205 2e-51
AF323991_1(AF323991|pid:none) Oryza sativa small GTP-binding pro... 204 5e-51
A47733(A47733)GTP-binding protein ypt5 - fission yeast (Schizos... 204 5e-51
AB032761_1(AB032761|pid:none) Oryza sativa Japonica Group rab5B ... 204 5e-51
AB007766_1(AB007766|pid:none) Arabidopsis thaliana mRNA for Ara6... 204 6e-51
GN106179_1(GN106179|pid:none) Sequence 10960 from Patent WO20090... 203 8e-51
AL031745_58(AL031745|pid:none) Plasmodium falciparum DNA from MA... 203 8e-51
BT064369_1(BT064369|pid:none) Zea mays full-length cDNA clone ZM... 203 8e-51
AJ420321_1(AJ420321|pid:none) Plasmodium falciparum mRNA for Rab... 203 8e-51
FN392319_931(FN392319|pid:none) Pichia pastoris GS115 chromosome... 203 8e-51
DQ335217_1(DQ335217|pid:none) Nicotiana tabacum small GTPase Rab... 203 1e-50
AM920428_768(AM920428|pid:none) Penicillium chrysogenum Wisconsi... 202 1e-50
AJ006225_1(AJ006225|pid:none) Mesembryanthemum crystallinum mRNA... 202 2e-50
AB379973_1(AB379973|pid:none) Physcomitrella patens subsp. paten... 202 2e-50
GN106017_1(GN106017|pid:none) Sequence 10798 from Patent WO20090... 201 3e-50
AB379972_1(AB379972|pid:none) Physcomitrella patens subsp. paten... 201 4e-50
AB379971_1(AB379971|pid:none) Physcomitrella patens subsp. paten... 199 2e-49
CU928175_646(CU928175|pid:none) Zygosaccharomyces rouxii strain ... 198 3e-49
AL049655_18(AL049655|pid:none) Arabidopsis thaliana DNA chromoso... 198 3e-49
AK316975_1(AK316975|pid:none) Arabidopsis thaliana AT3G54840 mRN... 198 3e-49
CU928171_340(CU928171|pid:none) Kluyveromyces thermotolerans str... 198 4e-49
CR380956_367(CR380956|pid:none) Candida glabrata strain CBS138 c... 196 1e-48
AE016816_122(AE016816|pid:none) Ashbya gossypii (= Eremothecium ... 196 1e-48
CR382123_593(CR382123|pid:none) Kluyveromyces lactis strain NRRL... 194 7e-48
AE017353_114(AE017353|pid:none) Cryptococcus neoformans var. neo... 192 3e-47
CR382133_458(CR382133|pid:none) Debaryomyces hansenii strain CBS... 190 7e-47
CR382130_285(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 190 1e-46
CU928180_414(CU928180|pid:none) Kluyveromyces thermotolerans str... 188 3e-46
FM992695_712(FM992695|pid:none) Candida dubliniensis CD36 chromo... 187 6e-46
AK296517_1(AK296517|pid:none) Homo sapiens cDNA FLJ60627 complet... 185 3e-45
AB054582_1(AB054582|pid:none) Entamoeba histolytica EhRab5 gene ... 182 2e-44
BT065783_1(BT065783|pid:none) Zea mays full-length cDNA clone ZM... 181 6e-44
CR382134_47(CR382134|pid:none) Debaryomyces hansenii strain CBS7... 181 6e-44
AM270014_11(AM270014|pid:none) Aspergillus niger contig An02c019... 181 6e-44
CR382124_95(CR382124|pid:none) Kluyveromyces lactis strain NRRL ... 176 2e-42
(P36018) RecName: Full=GTP-binding protein YPT52; &S38083(S3808... 175 2e-42
(Q6GQP4) RecName: Full=Ras-related protein Rab-31; AltName: Full... 172 2e-41
BC072698_1(BC072698|pid:none) Rattus norvegicus RAB31, member RA... 172 2e-41
AF254800_1(AF254800|pid:none) Rattus norvegicus GTP-binding prot... 172 3e-41
(Q921E2) RecName: Full=Ras-related protein Rab-31; &BC013063_1(... 171 4e-41
AB232617_1(AB232617|pid:none) Mus musculus mRNA for Rab22B, comp... 171 4e-41
BT058970_1(BT058970|pid:none) Salmo salar clone ssal-rgf-517-017... 171 5e-41
BC135941_1(BC135941|pid:none) Xenopus tropicalis RAB31, member R... 171 5e-41
BC123831_1(BC123831|pid:none) Bos taurus RAB31, member RAS oncog... 171 5e-41
AY890866_1(AY890866|pid:none) Synthetic construct Homo sapiens c... 171 6e-41
AY892852_1(AY892852|pid:none) Synthetic construct Homo sapiens c... 171 6e-41
AY891988_1(AY891988|pid:none) Synthetic construct Homo sapiens c... 171 6e-41
JC4961(JC4961) rab protein 22B - human &U57091_1(U57091|pid:none) 171 6e-41
(Q13636) RecName: Full=Ras-related protein Rab-31; AltName: Full... 171 6e-41
(Q9UL26) RecName: Full=Ras-related protein Rab-22A; Sho... 170 8e-41
AY891616_1(AY891616|pid:none) Synthetic construct Homo sapiens c... 170 8e-41
AJ276210_1(AJ276210|pid:none) Homo sapiens mRNA for GTP-binding ... 170 8e-41
BC100186_1(BC100186|pid:none) Xenopus laevis RAB31, member RAS o... 170 1e-40
Z22820_1(Z22820|pid:none) Canis familiaris mRNA for Rab22 protein. 169 2e-40
CR942451_1(CR942451|pid:none) Xenopus tropicalis finished cDNA, ... 167 5e-40
BT079806_1(BT079806|pid:none) Esox lucius clone eluc-evq-536-105... 167 5e-40
(P35285) RecName: Full=Ras-related protein Rab-22A; Sho... 167 7e-40
(P51154) RecName: Full=Ras-related protein Rab-22A; Sho... 166 1e-39
BC142190_1(BC142190|pid:none) Bos taurus RAB22A, member RAS onco... 166 1e-39
BC158650_1(BC158650|pid:none) Rattus norvegicus RAB22A, member R... 166 1e-39
CP001328_573(CP001328|pid:none) Micromonas sp. RCC299 chromosome... 164 7e-39
AY730667_1(AY730667|pid:none) Trypanosoma cruzi Rab GTPase prote... 162 2e-38
BC077537_1(BC077537|pid:none) Xenopus laevis hypothetical protei... 162 3e-38
AF458973_1(AF458973|pid:none) Saccharomyces cerevisiae strain YJ... 162 3e-38
(P36019) RecName: Full=GTP-binding protein YPT53; &AF458969_1(A... 161 4e-38
AK014407_1(AK014407|pid:none) Mus musculus 12 days embryo embryo... 160 8e-38
AM502231_21(AM502231|pid:none) Leishmania infantum chromosome 13. 160 8e-38
DQ213058_1(DQ213058|pid:none) Aspergillus niger strain N402 secr... 159 1e-37
AP007161_229(AP007161|pid:none) Aspergillus oryzae RIB40 genomic... 159 1e-37
CU633897_313(CU633897|pid:none) Podospora anserina genomic DNA c... 159 1e-37
(Q559X6) RecName: Full=Ras-related protein Rab-2B; &AC116921_8(... 159 2e-37
AC104706_1(AC104706|pid:none) Oryza sativa (japonica cultivar-gr... 159 2e-37
AY357217_1(AY357217|pid:none) Leishmania donovani Rab5b (Rab5b) ... 159 2e-37
CT005252_22(CT005252|pid:none) Leishmania major strain Friedlin,... 158 3e-37
BC121383_1(BC121383|pid:none) Xenopus tropicalis hypothetical pr... 157 7e-37
DQ019033_1(DQ019033|pid:none) Trichomonas vaginalis strain G3 sm... 157 7e-37
FN357554_31(FN357554|pid:none) Schistosoma mansoni genome sequen... 156 1e-36
BT075660_1(BT075660|pid:none) Osmerus mordax clone omor-eva-509-... 156 1e-36
(P34213) RecName: Full=Ras-related protein Rab-6.1; &S31127(S31... 156 2e-36
BT082803_1(BT082803|pid:none) Anoplopoma fimbria clone afim-evh-... 156 2e-36
BC080215_1(BC080215|pid:none) Danio rerio RAB6B, member RAS onco... 155 3e-36
BC086715_1(BC086715|pid:none) Danio rerio RAB25, member RAS onco... 154 4e-36
BC170902_1(BC170902|pid:none) Xenopus tropicalis RAB21, member R... 154 4e-36
AK154012_1(AK154012|pid:none) Mus musculus 2 days neonate thymus... 154 4e-36
AF119836_1(AF119836|pid:none) Homo sapiens GTP-binding protein R... 154 4e-36
BX890617_2(BX890617|pid:none) Zebrafish DNA sequence from clone ... 154 4e-36
AF101310_4(AF101310|pid:none) Caenorhabditis elegans cosmid C39F... 154 6e-36
GM977163_1(GM977163|pid:none) Sequence 71 from Patent WO20081456... 154 6e-36
(Q22782) RecName: Full=Ras-related protein Rab-6.2; &T34375(T34... 154 8e-36
BT071594_1(BT071594|pid:none) Picea sitchensis clone WS02926_J12... 154 8e-36
CR933465_1(CR933465|pid:none) Paramecium tetraurelia, Small GTPa... 154 8e-36
AE014134_2251(AE014134|pid:none) Drosophila melanogaster chromos... 154 8e-36
BT074643_1(BT074643|pid:none) Osmerus mordax clone omor-eva-513-... 153 1e-35
CR457282_1(CR457282|pid:none) Homo sapiens full open reading fra... 153 1e-35
(P55745) RecName: Full=Ras-related protein Rab-21; 153 1e-35
AF461434_1(AF461434|pid:none) Babesia gibsoni small GTP binding ... 153 1e-35
DQ397201_1(DQ397201|pid:none) Saccharum officinarum small GTP bi... 153 1e-35
BC157379_1(BC157379|pid:none) Danio rerio RAB6A, member RAS onco... 153 1e-35
(P20340) RecName: Full=Ras-related protein Rab-6A; Shor... 153 1e-35
AF013572_1(AF013572|pid:none) Bombyx mori small GTP-binding prot... 153 1e-35
AF093826_1(AF093826|pid:none) Plasmodium berghei GTP binding pro... 153 1e-35
(Q17R06) RecName: Full=Ras-related protein Rab-21; &BC118088_1(... 153 1e-35
BC091529_1(BC091529|pid:none) Danio rerio zgc:112018, mRNA (cDNA... 153 1e-35
AK172891_1(AK172891|pid:none) Mus musculus mRNA for mKIAA0118 pr... 153 1e-35
AY814955_1(AY814955|pid:none) Schistosoma japonicum SJCHGC02776 ... 153 1e-35
DQ311397_1(DQ311397|pid:none) Bombyx mori ras small monomeric GT... 153 1e-35
EU956012_1(EU956012|pid:none) Zea mays clone 1555506 ras-related... 153 1e-35
(P35282) RecName: Full=Ras-related protein Rab-21; AltName: Full... 153 1e-35
FJ943982_1(FJ943982|pid:none) Ovis aries RAB21 mRNA, complete cds. 153 1e-35
FN316995_1(FN316995|pid:none) Schistosoma japonicum isolate Anhu... 153 1e-35
BT044916_1(BT044916|pid:none) Salmo salar clone ssal-rgf-507-079... 153 1e-35
AM502236_114(AM502236|pid:none) Leishmania infantum chromosome 18. 152 2e-35
CR932579_1(CR932579|pid:none) Paramecium tetraurelia, Small GTPa... 152 2e-35
BT048705_1(BT048705|pid:none) Salmo salar clone ssal-sjb-012-287... 152 2e-35
BC097051_1(BC097051|pid:none) Danio rerio zgc:63637, mRNA (cDNA ... 152 2e-35
CR541984_1(CR541984|pid:none) Homo sapiens full open reading fra... 152 2e-35
CP000582_359(CP000582|pid:none) Ostreococcus lucimarinus CCE9901... 152 2e-35
FN357335_32(FN357335|pid:none) Schistosoma mansoni genome sequen... 152 2e-35
AF007547_1(AF007547|pid:none) Trypanosoma brucei Trab5B mRNA, co... 152 2e-35
EF144593_1(EF144593|pid:none) Populus trichocarpa clone WS01111_... 152 2e-35
GN105857_1(GN105857|pid:none) Sequence 10638 from Patent WO20090... 152 2e-35
GN106155_1(GN106155|pid:none) Sequence 10936 from Patent WO20090... 152 2e-35
AC069472_3(AC069472|pid:none) Arabidopsis thaliana chromosome 3 ... 152 2e-35
BC118789_1(BC118789|pid:none) Xenopus tropicalis RAB6B, member R... 152 2e-35
CR940347_17(CR940347|pid:none) Theileria annulata strain Ankara ... 152 2e-35
EU810302_1(EU810302|pid:none) Gymnochlora stellata Ras-related s... 152 2e-35
BT076853_1(BT076853|pid:none) Caligus rogercresseyi clone crog-e... 152 2e-35
EF145933_1(EF145933|pid:none) Populus trichocarpa clone WS0114_G... 152 2e-35
GN106117_1(GN106117|pid:none) Sequence 10898 from Patent WO20090... 152 2e-35
BC108532_1(BC108532|pid:none) Xenopus laevis hypothetical protei... 152 2e-35
AB054584_1(AB054584|pid:none) Entamoeba histolytica EhRabF1 mRNA... 152 3e-35
AM920437_2206(AM920437|pid:none) Penicillium chrysogenum Wiscons... 152 3e-35
(Q15771) RecName: Full=Ras-related protein Rab-30; &(Q17QB7) Re... 152 3e-35
BC076437_1(BC076437|pid:none) Danio rerio RAB30, member RAS onco... 151 4e-35
EU365390_1(EU365390|pid:none) Euplotes octocarinatus Rab GTPase ... 151 4e-35
AC161399_25(AC161399|pid:none) Medicago truncatula chromosome 2 ... 151 4e-35
AF228419_1(AF228419|pid:none) Toxoplasma gondii RAB6 protein (Ra... 151 4e-35
BC167022_1(BC167022|pid:none) Rattus norvegicus RAB17, member RA... 151 4e-35
DQ825390_1(DQ825390|pid:none) Theileria parva strain Muguga smal... 151 4e-35
(Q40191) RecName: Full=Ras-related protein Rab11A; &Z73949_1(Z7... 151 4e-35
AC140549_17(AC140549|pid:none) Medicago truncatula clone mth2-28... 151 5e-35
BC154221_1(BC154221|pid:none) Danio rerio zgc:63637, mRNA (cDNA ... 151 5e-35
E42148(E42148)GTP-binding protein rab14 - rat 151 5e-35
BT034664_1(BT034664|pid:none) Zea mays full-length cDNA clone ZM... 150 6e-35
EU954271_1(EU954271|pid:none) Zea mays clone 1460642 ras-related... 150 6e-35
X92977_1(X92977|pid:none) P.falciparum mRNA for rab6 GTPase prot... 150 6e-35
AB024025_4(AB024025|pid:none) Arabidopsis thaliana genomic DNA, ... 150 6e-35
DQ000572_1(DQ000572|pid:none) Synthetic construct clone PSF:1098... 150 6e-35
AB463205_1(AB463205|pid:none) Synthetic construct DNA, clone: pF... 150 6e-35
AM269968_23(AM269968|pid:none) Aspergillus niger contig An01c021... 150 6e-35
EF678326_1(EF678326|pid:none) Picea sitchensis clone WS02914_M23... 150 6e-35
CR380949_94(CR380949|pid:none) Candida glabrata strain CBS138 ch... 150 6e-35
D12541_1(D12541|pid:none) Pisum sativum mRNA for GTP-binding pro... 150 6e-35
BT057635_1(BT057635|pid:none) Salmo salar clone ssal-eve-504-180... 150 6e-35
FN357297_79(FN357297|pid:none) Schistosoma mansoni genome sequen... 150 8e-35
AC104285_6(AC104285|pid:none) Oryza sativa (japonica cultivar-gr... 150 8e-35
AB076904_1(AB076904|pid:none) Ciona intestinalis Ci-rab2 mRNA fo... 150 8e-35
AM438608_1(AM438608|pid:none) Vitis vinifera contig VV78X052328.... 150 8e-35
Z73950_1(Z73950|pid:none) L.japonicus mRNA for small GTP-binding... 150 8e-35
BT077352_1(BT077352|pid:none) Lepeophtheirus salmonis Pacific fo... 150 8e-35
AY904354_1(AY904354|pid:none) Gracilariopsis lemaneiformis small... 150 8e-35
FN316970_1(FN316970|pid:none) Schistosoma japonicum isolate Anhu... 150 8e-35
CS559708_1(CS559708|pid:none) Sequence 295 from Patent WO2006032... 150 1e-34
BT019697_1(BT019697|pid:none) Synthetic construct Homo sapiens R... 150 1e-34
AC008031_29(AC008031|pid:none) Trypanosoma brucei chromosome 2 c... 150 1e-34
(P36409) RecName: Full=Ras-related protein Rab-2A; 150 1e-34
BT051367_1(BT051367|pid:none) Medicago truncatula clone MTYF1_F2... 150 1e-34
D12548_1(D12548|pid:none) Pisum sativum mRNA for GTP-binding pro... 150 1e-34
BT039522_1(BT039522|pid:none) Zea mays full-length cDNA clone ZM... 150 1e-34
CS560194_1(CS560194|pid:none) Sequence 781 from Patent WO2006032... 150 1e-34
GN106077_1(GN106077|pid:none) Sequence 10858 from Patent WO20090... 150 1e-34
Y08425_1(Y08425|pid:none) N.plumbaginifolia mRNA for small GTP-b... 150 1e-34
(Q05975) RecName: Full=Ras-related protein Rab-2; &S38341(S3834... 150 1e-34
GN106197_1(GN106197|pid:none) Sequence 10978 from Patent WO20090... 150 1e-34
AP008208_2028(AP008208|pid:none) Oryza sativa (japonica cultivar... 150 1e-34
(P25766) RecName: Full=Ras-related protein RGP1; AltName: Full=G... 149 1e-34
E71440(E71440)GTP-binding protein RAB2A - Arabidopsis thaliana 149 1e-34
AJ307662_21(AJ307662|pid:none) Oryza sativa genomic DNA fragment... 149 1e-34
AK059888_1(AK059888|pid:none) Oryza sativa Japonica Group cDNA c... 149 1e-34
CR933429_1(CR933429|pid:none) Paramecium tetraurelia, Small GTPa... 149 1e-34
BC058059_1(BC058059|pid:none) Danio rerio zgc:63637, mRNA (cDNA ... 149 1e-34
BC152630_1(BC152630|pid:none) Danio rerio zgc:92772, mRNA (cDNA ... 149 1e-34
EF103367_1(EF103367|pid:none) Haliotis discus discus Ras-related... 149 1e-34
Z73937_1(Z73937|pid:none) L.japonicus mRNA for small GTP-binding... 149 1e-34
(Q05974) RecName: Full=Ras-related protein Rab-1A; &S38339(S383... 149 1e-34
D12542_1(D12542|pid:none) Pisum sativum mRNA for GTP-binding pro... 149 1e-34
FN357538_13(FN357538|pid:none) Schistosoma mansoni genome sequen... 149 1e-34
BC076247_1(BC076247|pid:none) Danio rerio zgc:92772, mRNA (cDNA ... 149 1e-34
BT070553_1(BT070553|pid:none) Picea sitchensis clone WS02735_N04... 149 1e-34
AL161545_37(AL161545|pid:none) Arabidopsis thaliana DNA chromoso... 149 1e-34
BT078735_1(BT078735|pid:none) Lepeophtheirus salmonis Pacific fo... 149 2e-34
AY893729_1(AY893729|pid:none) Synthetic construct Homo sapiens c... 149 2e-34
AC124143_12(AC124143|pid:none) Oryza sativa (japonica cultivar-g... 149 2e-34
BC009227_1(BC009227|pid:none) Homo sapiens RAB13, member RAS onc... 149 2e-34
AL670003_2(AL670003|pid:none) Neurospora crassa DNA linkage grou... 149 2e-34
AM459225_1(AM459225|pid:none) Vitis vinifera contig VV78X087264.... 149 2e-34
DQ414564_1(DQ414564|pid:none) Suberites domuncula Rab11 gene, co... 149 2e-34
BC094846_1(BC094846|pid:none) Homo sapiens RAB13, member RAS onc... 149 2e-34
CU928171_64(CU928171|pid:none) Kluyveromyces thermotolerans stra... 149 2e-34
CR382134_161(CR382134|pid:none) Debaryomyces hansenii strain CBS... 149 2e-34
(P46629) RecName: Full=Ras-related protein Rab-25; &A48500(A485... 149 2e-34
AB482179_1(AB482179|pid:none) Babesia bigemina Rab11 mRNA for sm... 149 2e-34
AK102491_1(AK102491|pid:none) Oryza sativa Japonica Group cDNA c... 149 2e-34
(P51153) RecName: Full=Ras-related protein Rab-13; AltName: Full... 149 2e-34
(Q58DS5) RecName: Full=Ras-related protein Rab-13; &BT021522_1(... 149 2e-34
EU244432_1(EU244432|pid:none) Capra hircus RAB11B (rab11b) mRNA,... 149 2e-34
S71559(S71559) GTP-binding protein rab2 - soybean &U32185_1(U32... 149 2e-34
(Q39570) RecName: Full=GTP-binding protein YPTC4; &JC4106(JC410... 149 2e-34
EF639001_1(EF639001|pid:none) Triatoma infestans clone TI-420 Ra... 149 2e-34
GN105993_1(GN105993|pid:none) Sequence 10774 from Patent WO20090... 149 2e-34
AY894025_1(AY894025|pid:none) Synthetic construct Homo sapiens c... 149 2e-34
BC045374_1(BC045374|pid:none) Danio rerio RAB14, member RAS onco... 149 2e-34
AE017352_188(AE017352|pid:none) Cryptococcus neoformans var. neo... 149 2e-34
BT035355_1(BT035355|pid:none) Zea mays full-length cDNA clone ZM... 149 2e-34
EF560724_1(EF560724|pid:none) Homo sapiens clone DKFZp564C1023 R... 149 2e-34
(P46638) RecName: Full=Ras-related protein Rab-11B; &A55005(A55... 149 2e-34
AK340277_1(AK340277|pid:none) Acyrthosiphon pisum ACYPI001698 mR... 149 2e-34
AK297498_1(AK297498|pid:none) Homo sapiens cDNA FLJ61134 complet... 149 2e-34
CR541691_1(CR541691|pid:none) Homo sapiens full open reading fra... 149 2e-34
CR954202_213(CR954202|pid:none) Ostreococcus tauri strain OTTH05... 149 2e-34
AK104346_1(AK104346|pid:none) Oryza sativa Japonica Group cDNA c... 149 2e-34
DQ311306_1(DQ311306|pid:none) Bombyx mori ras-related GTP-bindin... 149 2e-34
(P38555) RecName: Full=GTP-binding protein YPT31/YPT8; AltName: ... 149 2e-34
(P35292) RecName: Full=Ras-related protein Rab-17; &A46434(A464... 149 2e-34
BT049157_1(BT049157|pid:none) Salmo salar clone ssal-rgb2-591-24... 149 2e-34
(O35509) RecName: Full=Ras-related protein Rab-11B; &(Q15907) R... 149 2e-34
EF084887_1(EF084887|pid:none) Picea sitchensis clone WS0292_K24 ... 148 3e-34
AJ851582_1(AJ851582|pid:none) Gallus gallus mRNA for hypothetica... 148 3e-34
FN392319_1319(FN392319|pid:none) Pichia pastoris GS115 chromosom... 148 3e-34
(Q39572) RecName: Full=Ras-related protein YPTC6; &JC4108(JC410... 148 3e-34
BC082421_1(BC082421|pid:none) Xenopus laevis hypothetical LOC494... 148 3e-34
(P61019) RecName: Full=Ras-related protein Rab-2A; &(P61105) Re... 148 3e-34
GM977155_1(GM977155|pid:none) Sequence 63 from Patent WO20081456... 148 3e-34
CP000586_209(CP000586|pid:none) Ostreococcus lucimarinus CCE9901... 148 3e-34
AL137068_10(AL137068|pid:none) Human DNA sequence from clone RP1... 148 3e-34
AK009707_1(AK009707|pid:none) Mus musculus adult male tongue cDN... 148 3e-34
GN105983_1(GN105983|pid:none) Sequence 10764 from Patent WO20090... 148 3e-34
(Q90965) RecName: Full=Ras-related protein Rab-2A; &S52325(S523... 148 3e-34
GN106013_1(GN106013|pid:none) Sequence 10794 from Patent WO20090... 148 3e-34
AJ968959_1(AJ968959|pid:none) Mus musculus mRNA for RAB14 protei... 148 3e-34
BT052509_1(BT052509|pid:none) Medicago truncatula clone MTYFD_FE... 148 3e-34
GM977157_1(GM977157|pid:none) Sequence 65 from Patent WO20081456... 148 3e-34
AF003139_1(AF003139|pid:none) Caenorhabditis elegans cosmid F53G... 148 3e-34
DQ414558_1(DQ414558|pid:none) Suberites domuncula Rab2 gene, com... 148 3e-34
AC183493_34(AC183493|pid:none) Brassica oleracea Contig B, compl... 148 3e-34
FM992695_664(FM992695|pid:none) Candida dubliniensis CD36 chromo... 148 3e-34
JC2487(JC2487) GTP-binding protein H-YPT3 - human &X79780_1(X79... 148 3e-34
AL161545_36(AL161545|pid:none) Arabidopsis thaliana DNA chromoso... 148 3e-34
(P22129) RecName: Full=Ras-related protein Rab-11B; AltName: Ful... 148 3e-34
BT043649_1(BT043649|pid:none) Salmo salar clone HM5_0924 RAB2A, ... 148 3e-34
D12547_1(D12547|pid:none) Pisum sativum mRNA for GTP-binding pro... 148 3e-34
AF127669_1(AF127669|pid:none) Mus musculus small GTPase (Rab11a)... 148 3e-34
B86153(B86153) ARA-5 [imported] - Arabidopsis thaliana &U89959_... 148 3e-34
(P53994) RecName: Full=Ras-related protein Rab-2A; &AB232585_1(... 148 3e-34
BT045578_1(BT045578|pid:none) Salmo salar clone ssal-rgf-525-209... 148 3e-34
(P61107) RecName: Full=Ras-related protein Rab-14; &(Q52NJ6) Re... 148 3e-34
(Q01890) RecName: Full=Ras-like GTP-binding protein YPT1; &JC53... 148 4e-34
AF274025_1(AF274025|pid:none) Homo sapiens GTP-binding protein R... 148 4e-34
BC087498_1(BC087498|pid:none) Xenopus laevis hypothetical LOC496... 148 4e-34
BT070586_1(BT070586|pid:none) Picea sitchensis clone WS02737_M21... 148 4e-34
BT044417_1(BT044417|pid:none) Drosophila melanogaster FI09101 fu... 148 4e-34
FN357536_6(FN357536|pid:none) Schistosoma mansoni genome sequenc... 148 4e-34
BC120091_1(BC120091|pid:none) Bos taurus RAB25, member RAS oncog... 148 4e-34
(Q9FK68) RecName: Full=Ras-related protein RABA1c; &AB012245_16... 148 4e-34
BC071068_1(BC071068|pid:none) Xenopus laevis MGC78967 protein, m... 148 4e-34
(Q58DW6) RecName: Full=Ras-related protein Rab-25; &BT021481_1(... 148 4e-34
BC075268_1(BC075268|pid:none) Xenopus tropicalis RAB11B, member ... 148 4e-34
AY690483_1(AY690483|pid:none) Triticum aestivum rab GTP-binding ... 148 4e-34
AC183493_10(AC183493|pid:none) Brassica oleracea Contig B, compl... 148 4e-34
AE016820_626(AE016820|pid:none) Ashbya gossypii (= Eremothecium ... 148 4e-34
AC183495_20(AC183495|pid:none) Brassica oleracea Contig A, compl... 147 5e-34
AY223338_1(AY223338|pid:none) Schistosoma japonicum clone ZZD836... 147 5e-34
AY088624_1(AY088624|pid:none) Arabidopsis thaliana clone 8545 mR... 147 5e-34
AY220456_1(AY220456|pid:none) Limulus polyphemus rab11-2 mRNA, c... 147 5e-34
BT076415_1(BT076415|pid:none) Caligus rogercresseyi clone crog-e... 147 5e-34
(Q55FK2) RecName: Full=Ras-related protein Rab-6; 147 5e-34
BT035582_1(BT035582|pid:none) Zea mays full-length cDNA clone ZM... 147 5e-34
AL035708_16(AL035708|pid:none) Arabidopsis thaliana DNA chromoso... 147 5e-34
AK071461_1(AK071461|pid:none) Oryza sativa Japonica Group cDNA c... 147 5e-34
CP001323_241(CP001323|pid:none) Micromonas sp. RCC299 chromosome... 147 5e-34
(Q39222) RecName: Full=Ras-related protein RABA1b; AltName: Full... 147 5e-34
AC183496_25(AC183496|pid:none) Brassica oleracea, *** SEQUENCING... 147 5e-34
AP008215_340(AP008215|pid:none) Oryza sativa (japonica cultivar-... 147 5e-34
CR932818_1(CR932818|pid:none) Paramecium tetraurelia, Small GTPa... 147 5e-34
GN080103_1(GN080103|pid:none) Sequence 706 from Patent WO2009027... 147 5e-34
CU928175_289(CU928175|pid:none) Zygosaccharomyces rouxii strain ... 147 5e-34
CR536494_1(CR536494|pid:none) Homo sapiens full open reading fra... 147 5e-34
U46926_1(U46926|pid:none) Arabidopsis thaliana GTP-binding prote... 147 5e-34
DQ414565_1(DQ414565|pid:none) Suberites domuncula Rab14 gene, pa... 147 7e-34
CR932606_1(CR932606|pid:none) Paramecium tetraurelia, Small GTPa... 147 7e-34
CR932697_1(CR932697|pid:none) Paramecium tetraurelia, Small GTPa... 147 7e-34
Z73931_1(Z73931|pid:none) L.japonicus mRNA for small GTP-binding... 147 7e-34
BC048889_1(BC048889|pid:none) Danio rerio RAB11B, member RAS onc... 147 7e-34
GN080095_1(GN080095|pid:none) Sequence 698 from Patent WO2009027... 147 7e-34
BT076392_1(BT076392|pid:none) Caligus rogercresseyi clone crog-e... 147 7e-34
AB470307_1(AB470307|pid:none) Nicotiana tabacum NtRab11D mRNA fo... 147 7e-34
DQ157704_1(DQ157704|pid:none) Aiptasia pulchella Rab11 protein m... 147 7e-34
BC055141_1(BC055141|pid:none) Danio rerio zgc:63565, mRNA (cDNA ... 147 7e-34
BT059700_1(BT059700|pid:none) Salmo salar clone ssal-rgf-002-342... 147 7e-34
EF146669_1(EF146669|pid:none) Populus trichocarpa clone WS01211_... 147 7e-34
AY896243_1(AY896243|pid:none) Trichomonas vaginalis strain G3 sm... 147 7e-34
GN080135_1(GN080135|pid:none) Sequence 738 from Patent WO2009027... 147 7e-34
AY851657_1(AY851657|pid:none) Triticum aestivum small GTP-bindin... 147 7e-34
BC074609_1(BC074609|pid:none) Xenopus tropicalis RAB30, member R... 147 7e-34
BT077989_1(BT077989|pid:none) Lepeophtheirus salmonis Pacific fo... 147 7e-34
AY891305_1(AY891305|pid:none) Synthetic construct Homo sapiens c... 147 7e-34
(Q39571) RecName: Full=GTP-binding protein YPTC1; &DQ222936_1(D... 147 9e-34
GN106103_1(GN106103|pid:none) Sequence 10884 from Patent WO20090... 147 9e-34
GN105939_1(GN105939|pid:none) Sequence 10720 from Patent WO20090... 147 9e-34
AF083124_1(AF083124|pid:none) Homo sapiens CATX-8 mRNA, complete... 147 9e-34
J02998_1(J02998|pid:none) Rat ras-related protein mRNA, clone NT... 147 9e-34
GN106085_1(GN106085|pid:none) Sequence 10866 from Patent WO20090... 147 9e-34
(P22125) RecName: Full=Ras-related protein ORAB-1; &M38393_1(M3... 147 9e-34
(Q9WTL2) RecName: Full=Ras-related protein Rab-25; &AB232620_1(... 147 9e-34
BT036850_1(BT036850|pid:none) Zea mays full-length cDNA clone ZM... 147 9e-34
AB035354_1(AB035354|pid:none) Drosophila melanogaster mRNA for D... 147 9e-34
BT069763_1(BT069763|pid:none) Zea mays full-length cDNA clone ZM... 147 9e-34
GN106111_1(GN106111|pid:none) Sequence 10892 from Patent WO20090... 147 9e-34
EU965206_1(EU965206|pid:none) Zea mays clone 284484 ras-related ... 147 9e-34
CU638743_340(CU638743|pid:none) Podospora anserina genomic DNA c... 147 9e-34
BC058341_1(BC058341|pid:none) Danio rerio RAB14, member RAS onco... 147 9e-34
L12031_1(L12031|pid:none) Leishmania major V121 GTP-binding prot... 147 9e-34
AM494964_85(AM494964|pid:none) Leishmania braziliensis chromosom... 147 9e-34
AB015472_10(AB015472|pid:none) Arabidopsis thaliana genomic DNA,... 147 9e-34
Z73932_1(Z73932|pid:none) L.japonicus mRNA for small GTP-binding... 147 9e-34
BC045014_1(BC045014|pid:none) Xenopus laevis RAB1, member RAS on... 147 9e-34
BT051415_1(BT051415|pid:none) Medicago truncatula clone MTYF1_F2... 147 9e-34
BC041250_1(BC041250|pid:none) Xenopus laevis RAB11B, member RAS ... 147 9e-34
BT056265_1(BT056265|pid:none) Drosophila melanogaster FI09227 fu... 147 9e-34
AL606522_3(AL606522|pid:none) Mouse DNA sequence from clone RP23... 146 1e-33
DQ414556_1(DQ414556|pid:none) Suberites domuncula Rab1 gene, com... 146 1e-33
(P49104) RecName: Full=Ras-related protein Rab-2-B; &BT068076_1... 146 1e-33
EU284879_1(EU284879|pid:none) TSA: Elaeis guineensis EgEfMPOB000... 146 1e-33
AC183494_13(AC183494|pid:none) Brassica oleracea Contig C, compl... 146 1e-33
DQ214474_1(DQ214474|pid:none) Taeniopygia guttata clone 0063P003... 146 1e-33
BC097013_1(BC097013|pid:none) Danio rerio zgc:86773, mRNA (cDNA ... 146 1e-33
BT039216_1(BT039216|pid:none) Zea mays full-length cDNA clone ZM... 146 1e-33
DQ397202_1(DQ397202|pid:none) Saccharum officinarum small GTP bi... 146 1e-33
EF147099_1(EF147099|pid:none) Populus trichocarpa clone WS01227_... 146 1e-33
(Q28IZ3) RecName: Full=Ras-related protein Rab-19; &CR760145_1(... 146 1e-33
BT049939_1(BT049939|pid:none) Salmo salar clone ssal-rgb2-549-38... 146 1e-33
BT035344_1(BT035344|pid:none) Zea mays full-length cDNA clone ZM... 146 1e-33
GM977167_1(GM977167|pid:none) Sequence 75 from Patent WO20081456... 146 1e-33
BT064711_1(BT064711|pid:none) Zea mays full-length cDNA clone ZM... 146 1e-33
(Q5KTJ6) RecName: Full=Ras-related protein Rab-13; &AB158369_1(... 146 1e-33
BC168745_1(BC168745|pid:none) Rattus norvegicus RAB25, member RA... 146 1e-33
EF144948_1(EF144948|pid:none) Populus trichocarpa clone WS0111_B... 146 1e-33
AB035352_1(AB035352|pid:none) Drosophila melanogaster mRNA for D... 146 1e-33
EF710656_1(EF710656|pid:none) Glyptapanteles indiensis clone BAC... 146 1e-33
S06147(S06147;S03189)GTP-binding protein rab1B - rat 146 1e-33
BT001785_1(BT001785|pid:none) Drosophila melanogaster RH21315 fu... 146 1e-33
(P62820) RecName: Full=Ras-related protein Rab-1A; AltName: Full... 146 1e-33
AC138015_11(AC138015|pid:none) Medicago truncatula clone mth2-34... 146 2e-33
(Q2TA29) RecName: Full=Ras-related protein Rab-11A; &BC111143_1... 146 2e-33
(P51996) RecName: Full=GTP-binding protein YPT32/YPT11; AltName:... 146 2e-33
AF468652_1(AF468652|pid:none) Homo sapiens RAB2B mRNA, complete ... 146 2e-33
AC093018_9(AC093018|pid:none) Oryza sativa chromosome 3 BAC OSJN... 146 2e-33
CR382124_213(CR382124|pid:none) Kluyveromyces lactis strain NRRL... 146 2e-33
AK111561_1(AK111561|pid:none) Oryza sativa Japonica Group cDNA c... 146 2e-33
DQ019037_1(DQ019037|pid:none) Trichomonas vaginalis strain G3 sm... 146 2e-33
AC140545_16(AC140545|pid:none) Medicago truncatula clone mth2-11... 146 2e-33
CR932630_1(CR932630|pid:none) Paramecium tetraurelia, Small GTPa... 146 2e-33
CR382122_22(CR382122|pid:none) Kluyveromyces lactis strain NRRL ... 146 2e-33
AF030183_1(AF030183|pid:none) Entamoeba histolytica GTP-binding ... 146 2e-33
L29273_1(L29273|pid:none) Nicotiana tabacum SR1 Nt-rab6 mRNA, co... 146 2e-33
AC159407_36(AC159407|pid:none) Trypanosoma brucei chromosome 8 c... 146 2e-33
AB025628_11(AB025628|pid:none) Arabidopsis thaliana genomic DNA,... 146 2e-33
AL021710_9(AL021710|pid:none) Arabidopsis thaliana DNA chromosom... 146 2e-33
(P34140) RecName: Full=Ras-related protein Rab-1B; 146 2e-33
BX647601_1(BX647601|pid:none) Homo sapiens mRNA; cDNA DKFZp313C1... 146 2e-33
(Q40194) RecName: Full=Ras-related protein Rab11D; &Z73952_1(Z7... 146 2e-33
CR380957_540(CR380957|pid:none) Candida glabrata strain CBS138 c... 146 2e-33
AF532626_1(AF532626|pid:none) Glycine max small GTP-binding prot... 146 2e-33
BT037200_1(BT037200|pid:none) Zea mays full-length cDNA clone ZM... 145 2e-33
BT068335_1(BT068335|pid:none) Zea mays full-length cDNA clone ZM... 145 2e-33
EF085830_1(EF085830|pid:none) Picea sitchensis clone WS0286_P20 ... 145 2e-33
AJ810707_1(AJ810707|pid:none) Poa pratensis mRNA for RAB1-like (... 145 2e-33
(Q2HJH2) RecName: Full=Ras-related protein Rab-1B; &BC105393_1(... 145 2e-33
D12549_1(D12549|pid:none) Pisum sativum mRNA for GTP-binding pro... 145 2e-33
AC069473_2(AC069473|pid:none) Arabidopsis thaliana chromosome 3 ... 145 2e-33
D12546_1(D12546|pid:none) Pisum sativum mRNA for GTP-binding pro... 145 2e-33
GN106065_1(GN106065|pid:none) Sequence 10846 from Patent WO20090... 145 2e-33
CR533462_1(CR533462|pid:none) Homo sapiens full open reading fra... 145 2e-33
(P49103) RecName: Full=Ras-related protein Rab-2-A; &T02242(T02... 145 2e-33
AK059799_1(AK059799|pid:none) Oryza sativa Japonica Group cDNA c... 145 2e-33
AY060495_1(AY060495|pid:none) Arabidopsis thaliana AT4g17530/dl4... 145 2e-33
EF144402_1(EF144402|pid:none) Populus trichocarpa clone PX0019_E... 145 2e-33
AY220749_1(AY220749|pid:none) Limulus polyphemus Rab11-1a mRNA, ... 145 2e-33
BC081187_1(BC081187|pid:none) Xenopus laevis MGC84419 protein, m... 145 2e-33
(Q5RE13) RecName: Full=Ras-related protein Rab-1B; &(Q9H0U4) Re... 145 2e-33
GM977161_1(GM977161|pid:none) Sequence 69 from Patent WO20081456... 145 2e-33
BT043430_1(BT043430|pid:none) Zea mays full-length cDNA clone ZM... 145 3e-33
(Q9D1G1) RecName: Full=Ras-related protein Rab-1B; &AB232584_1(... 145 3e-33
CR932686_1(CR932686|pid:none) Paramecium tetraurelia, Small GTPa... 145 3e-33
GN106059_1(GN106059|pid:none) Sequence 10840 from Patent WO20090... 145 3e-33
BT057068_1(BT057068|pid:none) Salmo salar clone ssal-eve-570-039... 145 3e-33
(Q550H6) RecName: Full=Ras-related protein Rab-11C; 145 3e-33
AY220748_1(AY220748|pid:none) Limulus polyphemus Rab11-1c mRNA, ... 145 3e-33
(Q92928) RecName: Full=Putative Ras-related protein Rab-1C; ... 145 3e-33
EF083999_1(EF083999|pid:none) Picea sitchensis clone WS0281_E05 ... 145 3e-33
(Q52NJ2) RecName: Full=Ras-related protein Rab-1A; &AY996813_1(... 145 3e-33
AM471469_2(AM471469|pid:none) Vitis vinifera contig VV78X014719.... 145 3e-33
GM977145_1(GM977145|pid:none) Sequence 53 from Patent WO20081456... 145 3e-33
AK151085_1(AK151085|pid:none) Mus musculus bone marrow macrophag... 145 3e-33
BC121850_1(BC121850|pid:none) Xenopus tropicalis cDNA clone IMAG... 145 3e-33
BT077510_1(BT077510|pid:none) Lepeophtheirus salmonis Pacific fo... 145 3e-33
BT045814_1(BT045814|pid:none) Salmo salar clone ssal-rgf-532-060... 145 3e-33
BC107443_1(BC107443|pid:none) Rattus norvegicus RAB2B, member RA... 145 4e-33
EU162609_23(EU162609|pid:none) Cleome spinosa clone contig83 BAC... 145 4e-33
BT080360_1(BT080360|pid:none) Caligus clemensi clone ccle-evs-52... 145 4e-33
AB241229_1(AB241229|pid:none) Pyrsonympha grandis RsSmRab11_1 mR... 145 4e-33
AF108883_1(AF108883|pid:none) Capsicum annuum small GTP-binding ... 145 4e-33
AF324990_1(AF324990|pid:none) Arabidopsis thaliana AT5g47200 (AT... 145 4e-33
(P10536) RecName: Full=Ras-related protein Rab-1B; &X13905_1(X1... 145 4e-33
AB463206_1(AB463206|pid:none) Synthetic construct DNA, clone: pF... 145 4e-33
AY223077_1(AY223077|pid:none) Schistosoma japonicum SJCHGC09497 ... 145 4e-33
AJ518934_1(AJ518934|pid:none) Hordeum vulgare subsp. vulgare mRN... 145 4e-33
BT058103_1(BT058103|pid:none) Drosophila melanogaster GH27649 fu... 145 4e-33

>(Q86JP3) RecName: Full=Ras-related protein Rab-5A;
&AC115599_18(AC115599|pid:none)
Length = 201

Score = 334 bits (857), Expect(2) = 4e-91
Identities = 170/174 (97%), Positives = 171/174 (98%)
Frame = +1

Query: 217 MNNNNKIFQFKLVLLGEAAVGKSSLVLRFVRGHFLDYQESTIGAAFLAQTVCLNDTTVKF 396
MNNNNKIFQFKLVLLGEAAVGKSSLVLRFVRGHFLDYQESTIGAAFLAQTVCLNDTTVKF
Sbjct: 1 MNNNNKIFQFKLVLLGEAAVGKSSLVLRFVRGHFLDYQESTIGAAFLAQTVCLNDTTVKF 60

Query: 397 EIWDTAGQERYHTLAPMYYRGAQAAIVVYDIRSEDSFERAIKWVKELQRQGSPNIVIALA 576
EIWDTAGQERYHTLAPMYYRGAQAAIVVYDIRSEDSFERAIKWVKELQRQGSPNIVIALA
Sbjct: 61 EIWDTAGQERYHTLAPMYYRGAQAAIVVYDIRSEDSFERAIKWVKELQRQGSPNIVIALA 120

Query: 577 GNKLDLAAKRKVETAEAQQYAEENGLLFMETSAKTSQNVNELFVEIAKKTSQNP 738
GNKLDLAAKRKVETAEAQQYAEENGLLFMETSAKTSQNVNELFVEIAKK + P
Sbjct: 121 GNKLDLAAKRKVETAEAQQYAEENGLLFMETSAKTSQNVNELFVEIAKKLPKTP 174

Score = 25.4 bits (54), Expect(2) = 4e-91
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2

Query: 752 GSGRVAIAPID 784
GSGRVAIAPID
Sbjct: 179 GSGRVAIAPID 189

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,202,500,069
Number of extensions: 19354149
Number of successful extensions: 56863
Number of sequences better than 10.0: 3759
Number of HSP's gapped: 54342
Number of HSP's successfully gapped: 3789
Length of query: 393
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 262
Effective length of database: 627,191,635
Effective search space: 164324208370
Effective search space used: 164324208370
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.81 gvh: 0.54 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.25 mip: 0.07
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
28.0 %: nuclear
16.0 %: mitochondrial
8.0 %: peroxisomal
4.0 %: cytoskeletal

>> prediction for Contig-U14168-1 is cyt

VS (DIR, S) 2
VH (FL, L) 0
VF (FL, S) 2
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 7
CH (FL, L) 1
CF (FL, S) 4
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0