Contig-U14167-1
Contig ID Contig-U14167-1
Contig update 2002.12.18
Contig sequence
>Contig-U14167-1 (Contig-U14167-1Q) /CSM_Contig/Contig-U14167-1Q.Seq.d
AAAAATAAAATNAATTAATACATAGAAAATAAAAAATCAAATAATAACAT
TACAAAAAAAATAAAAAAAATAAAAAAATTAAGTAAATTATAATTATCGA
TCTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGGG
AGGTGATATTCATCTTTGTTCAATGATTTTAGGTAAAAATCATTTAATTT
TTTTATATTTTGCAAATTTATTTGGTAGTACATTATCATTTTTAGCAACT
ATTATTACAATAGTATTTTATTTAGTTAAAAAATATATTCAAAATAAATC
ATTTAGAGAAAATCCACACCAATATTGTCATCAACACCAATATTTCGATT
CATCAAAACTTAATGAAATTAATAATAGTGGAGTTGGTTCATATTCATCA
ACTCCAATCTCAATTCAAAATAATAATAATAAAAATAATAACCTCCCAAA
ACAAAAAAATAATGAAAAACAGCCATTAATAAATAAAAATCATAATAACT
ATNGTAATTATTCGACATCAGCAACTTCATCATCATCGAGTTCATCATCA
TTTTCTTCGACCAATAGTGGATCATCATATGAATATCAACAACCACAAAA
AAATCAACAAACCCTATCATCATCTGATAAAAACAATACAATTCCATCAA
CAAATACAAAATATGAAATTGAATTATCAATTCCACAATTTAAAGGAAAC
AAATGTGGGCCAAATTGTTTACTTTTTTCAAATATACCACAAATTAAAAA
TGCATTAGAACAAAAGAAAAATCCAAAGAAAATTGACACTTTAATATTTT
ATCTTTCAATATCAGATTTTATTGCAGTATCAGGAATAATTATAGAACAA
TTAATAATTATATTTAATAAAGAGATATCAAAATCAATTGGATTTTGTAT
TGGTGAAAGAGTTTCAATTCATTTTGGATTATTGGCAACATTATTTTGGT
CAAATTGTATTGCATATTATTTATTAAGAGAAACTTATGAATTGAAACCA
TATAATATTAGATTTGTTTATTTTCATATAGTTTGTTGGGGTATGGCATT
GATTGGTGTTGCAAGTTTATTCTTTTCAAAGATTATAACAGTTTCAAATA
TTGATCAAGGTGGTAGTTGGTGTTCAGTTTCATCATCTTATCAATTATAC
TTTTGGGTGATACCATTGTTTGTTTCATTCACTTGGAATTTAATATGTTA
TTGTTTAATTTATAGAAAGTTTAATAAAATAATTGGAATTTATGGTATTC
AATCAGTACAAATAAAAACAATCATCATTAGAAAACTTTCATTCTATTTA
TTGGCATTTTTAATTACTTGGGTTTGGGATGTAATTAATAATTCAATTTT
CTTATATGAAGGAAAATGTCCACCATTTGCACTTTGGATACTTCAAGAAT
TTTTTTCTTCTGGTTATGGATTTTTTAATTCTTTAGCATATGCTGTTACA
ACTAGATTCTATAGTAGAAAATGATTTCTATTATAAATAGAATGAAATAA
TAAAAAAATAATTTGTAAAAAAAAAAAAAAAAAAAAAATAGAATAAATAT
ATAAATATAAAATAATAAAAATAAAATAATAATAAAA

Gap no gap
Contig length 1587
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 2699776
End point 2701364
Strand (PLUS/MINUS) PLUS
Number of clones 3
Number of EST 4
Link to clone list U14167
List of clone(s)

est1=CFA462F,1,116
est2=SSM331E,22,1587
est3=CFA462Z,784,1305
est4=SSE818F,1348,1588
Translated Amino Acid sequence
kikxint*kiknqiitlqkk*kk*kn*VNYNYRSLKKKKKKKKKKKKKMGGDIHLCSMIL
GKNHLIFLYFANLFGSTLSFLATIITIVFYLVKKYIQNKSFRENPHQYCHQHQYFDSSKL
NEINNSGVGSYSSTPISIQNNNNKNNNLPKQKNNEKQPLINKNHNNYXNYSTSATSSSSS
SSSFSSTNSGSSYEYQQPQKNQQTLSSSDKNNTIPSTNTKYEIELSIPQFKGNKCGPNCL
LFSNIPQIKNALEQKKNPKKIDTLIFYLSISDFIAVSGIIIEQLIIIFNKEISKSIGFCI
GERVSIHFGLLATLFWSNCIAYYLLRETYELKPYNIRFVYFHIVCWGMALIGVASLFFSK
IITVSNIDQGGSWCSVSSSYQLYFWVIPLFVSFTWNLICYCLIYRKFNKIIGIYGIQSVQ
IKTIIIRKLSFYLLAFLITWVWDVINNSIFLYEGKCPPFALWILQEFFSSGYGFFNSLAY
AVTTRFYSRK*fll*ie*nnkkiickkkkkkkie*iykykiikik***


Translated Amino Acid sequence (All Frames)
Frame A:
knkxn*yienkksnnnitkkikkikklskl*lsifekkkkkkkkkkkkngr*ysslfndf
r*ksfnffifckfiw*yiiifsnyyynsilfs*kiysk*ii*rkstpilsstpifrfikt
**n***wswfifinsnlnsk****k**ppktkk**ktaink*ks**lx*lfdisnfiiie
fiiiffdq*wiii*istttkkstnpiii**kqynsinkyki*n*iinsti*rkqmwaklf
tffkyttn*kcirtkeksken*hfnilsfnirfycsirnnyrtinnyi**rdikinwily
w*ksfnsfwiigniilvklycilfikrnl*ieti*y*iclfsysllgygidwcckfilfk
dynsfky*srw*lvfsfiilsiillgdtivcfihlefnmllfnl*kv**nnwnlwysist
nknnhh*ktfilfigifnylglgcn**fnfli*rkmstictldtsrifffwlwif*ffsi
ccyn*il**kmisiinrmk**knnl*kkkkkknrini*i*nnknkiiik


Frame B:
kikxint*kiknqiitlqkk*kk*kn*VNYNYRSLKKKKKKKKKKKKKMGGDIHLCSMIL
GKNHLIFLYFANLFGSTLSFLATIITIVFYLVKKYIQNKSFRENPHQYCHQHQYFDSSKL
NEINNSGVGSYSSTPISIQNNNNKNNNLPKQKNNEKQPLINKNHNNYXNYSTSATSSSSS
SSSFSSTNSGSSYEYQQPQKNQQTLSSSDKNNTIPSTNTKYEIELSIPQFKGNKCGPNCL
LFSNIPQIKNALEQKKNPKKIDTLIFYLSISDFIAVSGIIIEQLIIIFNKEISKSIGFCI
GERVSIHFGLLATLFWSNCIAYYLLRETYELKPYNIRFVYFHIVCWGMALIGVASLFFSK
IITVSNIDQGGSWCSVSSSYQLYFWVIPLFVSFTWNLICYCLIYRKFNKIIGIYGIQSVQ
IKTIIIRKLSFYLLAFLITWVWDVINNSIFLYEGKCPPFALWILQEFFSSGYGFFNSLAY
AVTTRFYSRK*fll*ie*nnkkiickkkkkkkie*iykykiikik***


Frame C:
k*nxlihrk*kik**hykknkknkkik*iiiidl*kkkkkkkkkkkkkwevififvq*f*
vkii*ffyilqiylvvhyhf*qlllq*yfi*lknifkinhlekihtnivintnisihqnl
mkliivelvhihqlqsqfkiiiikiitsqnkkimknsh**ikiiitxviirhqqlhhhrv
hhhflrpivdhhmninnhkkinkpyhhliktiqfhqqiqnmklnyqfhnlketnvgqivy
ffqiyhklkmh*nkrkiqrkltl*yfifqyqillqyqe*l*nn**lylikryqnqldfvl
vkefqfildywqhyfgqivlhiiy*eklmn*nhiildlfifi*fvgvwh*lvlqvysfqr
l*qfqilikvvvgvqfhhlinytfg*yhclfhslgi*yviv*fieslik*lefmvfnqyk
*kqsslenfhsiywhf*llgfgm*liiqfsymkenvhhlhfgyfknffllvmdflil*hm
llqldsivendfyyk*neiikk*fvkkkkkkk*nkyinik**k*nnnk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U14167-1 (Contig-U14167-1Q)
/CSM_Contig/Contig-U14167-1Q.Seq.d
(1587 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U14167-1 (Contig-U14167-1Q) /CSM_Contig/Conti... 1945 0.0
Contig-U14477-1 (Contig-U14477-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U11052-1 (Contig-U11052-1Q) /CSM_Contig/Conti... 40 0.007
Contig-U12480-1 (Contig-U12480-1Q) /CSM_Contig/Conti... 38 0.029
Contig-U11141-1 (Contig-U11141-1Q) /CSM_Contig/Conti... 38 0.029
Contig-U10558-1 (Contig-U10558-1Q) /CSM_Contig/Conti... 38 0.029
Contig-U09432-1 (Contig-U09432-1Q) /CSM_Contig/Conti... 38 0.029
Contig-U02712-1 (Contig-U02712-1Q) /CSM_Contig/Conti... 38 0.029
Contig-U02390-1 (Contig-U02390-1Q) /CSM_Contig/Conti... 38 0.029

>Contig-U14167-1 (Contig-U14167-1Q) /CSM_Contig/Contig-U14167-1Q.Seq.d
Length = 1587

Score = 1945 bits (981), Expect = 0.0
Identities = 1012/1026 (98%)
Strand = Plus / Plus


Query: 491 cataataactatngtaattattcgacatcagcaacttcatcatcatcgagttcatcatca 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 cataataactatngtaattattcgacatcagcaacttcatcatcatcgagttcatcatca 550


Query: 551 ttttcttcgaccaatagtggatcatcatatgaatatcaacaaccacnnnnnnntcaacaa 610
|||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 551 ttttcttcgaccaatagtggatcatcatatgaatatcaacaaccacaaaaaaatcaacaa 610


Query: 611 accctatcatcatctgataaaaacaatacaattccatcaacaaatacaaaatatgaaatt 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 accctatcatcatctgataaaaacaatacaattccatcaacaaatacaaaatatgaaatt 670


Query: 671 gaattatcaattccacaatttaaaggaaacaaatgtgggccaaattgtttacttttttca 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gaattatcaattccacaatttaaaggaaacaaatgtgggccaaattgtttacttttttca 730


Query: 731 aatataccacaaattaaaaatgcattagaacaaaagaaaaatccaaagaaaattgacact 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 aatataccacaaattaaaaatgcattagaacaaaagaaaaatccaaagaaaattgacact 790


Query: 791 ttaatattttatctttcaatatcagattttattgcagtatcaggaataattatagaacaa 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 ttaatattttatctttcaatatcagattttattgcagtatcaggaataattatagaacaa 850


Query: 851 ttaataattatatttaataaagagatatcaaaatcaattggattttgtattggtgaaaga 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 ttaataattatatttaataaagagatatcaaaatcaattggattttgtattggtgaaaga 910


Query: 911 gtttcaattcattttggattattggcaacattattttggtcaaattgtattgcatattat 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911 gtttcaattcattttggattattggcaacattattttggtcaaattgtattgcatattat 970


Query: 971 ttattaagagaaacttatgaattgaaaccatataatattagatttgtttattttcatata 1030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971 ttattaagagaaacttatgaattgaaaccatataatattagatttgtttattttcatata 1030


Query: 1031 gtttgttggggtatggcattgattggtgttgcaagtttattcttttcaaagattataaca 1090
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1031 gtttgttggggtatggcattgattggtgttgcaagtttattcttttcaaagattataaca 1090


Query: 1091 gtttcaaatattgatcaaggtggtagttggtgttcagtttcatcatcttatcaattatac 1150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1091 gtttcaaatattgatcaaggtggtagttggtgttcagtttcatcatcttatcaattatac 1150


Query: 1151 ttttgggtgataccattgtttgtttcattcacttggaatttaatatgttattgtttaatt 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1151 ttttgggtgataccattgtttgtttcattcacttggaatttaatatgttattgtttaatt 1210


Query: 1211 tatagaaagtttaataaaataattggaatttatggtattcaatcagtacaaataaaaaca 1270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1211 tatagaaagtttaataaaataattggaatttatggtattcaatcagtacaaataaaaaca 1270


Query: 1271 atcatcattagaaaactttcattctatttattggcatttttaattacttgggtttgggat 1330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1271 atcatcattagaaaactttcattctatttattggcatttttaattacttgggtttgggat 1330


Query: 1331 gtaattaataattcaattttcttatatgaaggaaaatgtccaccatttgcactttggata 1390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1331 gtaattaataattcaattttcttatatgaaggaaaatgtccaccatttgcactttggata 1390


Query: 1391 cttcaagaannnnnnncttctggttatggattttttaattctttagcatatgctgttaca 1450
||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1391 cttcaagaatttttttcttctggttatggattttttaattctttagcatatgctgttaca 1450


Query: 1451 actagattctatagtagaaaatgatttctattataaatagaatgaaataataaaaaaata 1510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1451 actagattctatagtagaaaatgatttctattataaatagaatgaaataataaaaaaata 1510


Query: 1511 atttgt 1516
||||||
Sbjct: 1511 atttgt 1516


Score = 492 bits (248), Expect = e-139
Identities = 262/269 (97%)
Strand = Plus / Plus


Query: 147 tgggaggtgatattcatctttgttcaatgattttaggtaaaaatcatttaannnnnnnat 206
||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 147 tgggaggtgatattcatctttgttcaatgattttaggtaaaaatcatttaatttttttat 206


Query: 207 attttgcaaatttatttggtagtacattatcatttttagcaactattattacaatagtat 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 attttgcaaatttatttggtagtacattatcatttttagcaactattattacaatagtat 266


Query: 267 tttatttagttaaaaaatatattcaaaataaatcatttagagaaaatccacaccaatatt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tttatttagttaaaaaatatattcaaaataaatcatttagagaaaatccacaccaatatt 326


Query: 327 gtcatcaacaccaatatttcgattcatcaaaacttaatgaaattaataatagtggagttg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gtcatcaacaccaatatttcgattcatcaaaacttaatgaaattaataatagtggagttg 386


Query: 387 gttcatattcatcaactccaatctcaatt 415
|||||||||||||||||||||||||||||
Sbjct: 387 gttcatattcatcaactccaatctcaatt 415


Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus


Query: 79 ttaagtaaattataattatcgatctttg 106
||||||||||||||||||||||||||||
Sbjct: 79 ttaagtaaattataattatcgatctttg 106


Score = 30.2 bits (15), Expect = 7.0
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 1287 tttcattctatttat 1301
|||||||||||||||
Sbjct: 1497 tttcattctatttat 1483


Score = 30.2 bits (15), Expect = 7.0
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 1483 ataaatagaatgaaa 1497
|||||||||||||||
Sbjct: 1301 ataaatagaatgaaa 1287


>Contig-U14477-1 (Contig-U14477-1Q) /CSM_Contig/Contig-U14477-1Q.Seq.d
Length = 642

Score = 42.1 bits (21), Expect = 0.002
Identities = 27/29 (93%)
Strand = Plus / Plus


Query: 526 ttcatcatcatcgagttcatcatcatttt 554
|||||||||||| | ||||||||||||||
Sbjct: 124 ttcatcatcatcaacttcatcatcatttt 152


Score = 34.2 bits (17), Expect = 0.45
Identities = 20/21 (95%)
Strand = Plus / Plus


Query: 516 catcagcaacttcatcatcat 536
||||| |||||||||||||||
Sbjct: 129 catcatcaacttcatcatcat 149


>Contig-U11052-1 (Contig-U11052-1Q) /CSM_Contig/Contig-U11052-1Q.Seq.d
Length = 2274

Score = 40.1 bits (20), Expect = 0.007
Identities = 23/24 (95%)
Strand = Plus / Plus


Query: 628 taaaaacaatacaattccatcaac 651
||||||||||||||||||| ||||
Sbjct: 471 taaaaacaatacaattccaacaac 494


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 38,453
Number of Sequences: 6905
Number of extensions: 38453
Number of successful extensions: 4841
Number of sequences better than 10.0: 512
length of query: 1587
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1571
effective length of database: 5,564,391
effective search space: 8741658261
effective search space used: 8741658261
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.18
Homology vs DNA
Query= Contig-U14167-1 (Contig-U14167-1Q) /CSM_Contig/Contig-U14167-1Q.Seq.d
(1587 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AY360136) Dictyostelium discoideum putative G protein-coupl... 1162 0.0 2
(BJ371826) Dictyostelium discoideum cDNA clone:ddc1l16, 3' e... 1035 0.0 1
(AU039058) Dictyostelium discoideum slug cDNA, clone SSM331. 932 0.0 2
(AU072537) Dictyostelium discoideum slug cDNA, clone SSE818. 174 2e-55 2
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 36 3e-06 14
(AL844506) Plasmodium falciparum chromosome 7. 36 6e-04 19
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 36 0.003 22
(AY653733) Acanthamoeba polyphaga mimivirus, complete genome. 34 0.005 27
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 36 0.008 21
(CU914525) S.lycopersicum DNA sequence from clone LE_HBa-149... 38 0.010 5
(DU848092) 33124 Tomato HindIII BAC Library Solanum lycopers... 54 0.017 1
(AM180355) Clostridium difficile 630 complete genome. 36 0.019 17
(FH013081) CHO_OF412xf10f2.ab1 CHO_OF Nicotiana tabacum geno... 38 0.021 3
(FH013154) CHO_OF412xf10r1.ab1 CHO_OF Nicotiana tabacum geno... 38 0.025 3
(AC132137) Mus musculus BAC clone RP23-153E2 from 3, complet... 38 0.037 8
(AE014817) Plasmodium falciparum 3D7 chromosome 14 section 2... 36 0.042 14
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 38 0.042 14
(AE014852) Plasmodium falciparum 3D7 chromosome 12, section ... 36 0.053 13
(AL844509) Plasmodium falciparum chromosome 13. 34 0.057 18
(CP000312) Clostridium perfringens SM101, complete genome. 38 0.060 20
(AX344569) Sequence 20 from Patent WO0200932. 42 0.063 10
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 38 0.063 13
(AE014847) Plasmodium falciparum 3D7 chromosome 12, section ... 32 0.066 16
(AC115581) Dictyostelium discoideum chromosome 2 map complem... 34 0.069 9
(AE000787) Borrelia burgdorferi B31 plasmid lp38, complete s... 42 0.075 6
(CP000102) Methanosphaera stadtmanae DSM 3091, complete genome. 34 0.082 20
(CP000246) Clostridium perfringens ATCC 13124, complete genome. 42 0.084 19
(CR382400) Plasmodium falciparum chromosome 6, complete sequ... 32 0.098 16
(CR382398) Plasmodium falciparum chromosome 6, complete sequ... 36 0.11 15
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 32 0.12 15
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 30 0.14 17
(AM285320) Spiroplasma citri GII3-3X chromosome, contig Cont... 36 0.17 10
(CP000728) Clostridium botulinum F str. Langeland, complete ... 36 0.20 20
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl... 36 0.20 18
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 38 0.22 20
(CT867948) Zebrafish DNA sequence from clone CH211-79K12 in ... 50 0.26 1
(AC216469) Populus trichocarpa clone POP036-C22, complete se... 50 0.26 1
(DY226764) ID0AAI9YE12RM1 ID0AEE Acyrthosiphon pisum cDNA cl... 50 0.26 1
(AE014848) Plasmodium falciparum 3D7 chromosome 12, section ... 36 0.27 12
(CP000727) Clostridium botulinum A str. Hall, complete genome. 36 0.29 21
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-... 32 0.36 11
(EJ425783) 1093012271342 Global-Ocean-Sampling_GS-28-01-01-1... 32 0.40 3
(EJ221496) 1092351238185 Global-Ocean-Sampling_GS-27-01-01-1... 32 0.41 3
(AL031749) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 40 0.43 6
(AC119418) Medicago truncatula clone mth1-23l16, complete se... 38 0.43 8
(AC006280) Plasmodium falciparum chromosome 12 clone 3D7, **... 30 0.46 15
(AC006279) Plasmodium falciparum chromosome 12 clone 3D7, **... 36 0.66 13
(AC125390) Medicago truncatula clone mth2-17c11, complete se... 32 0.68 10
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 32 0.69 12
(CP000395) Borrelia afzelii PKo, complete genome. 40 0.72 18
(AP000081) Homo sapiens genomic DNA, chromosome 8p11.2, sene... 42 0.74 3
(AC140987) Rattus norvegicus clone CH230-237F12, WORKING DRA... 36 0.74 7
(AC209100) Populus trichocarpa clone POP042-C19, complete se... 32 0.77 10
(CP000726) Clostridium botulinum A str. ATCC 19397, complete... 36 0.82 20
(CT967937) Equus caballus GSS, BAC clone CH241-41O9, T7 end ... 46 0.86 2
(AM412317) Clostridium botulinum A str. ATCC 3502 complete g... 36 0.88 20
(AC189414) Brassica rapa subsp. pekinensis clone KBrB061K11,... 36 0.89 8
(EU275727) Dictyostelium fasciculatum strain SH3 mitochondri... 34 0.91 7
(AC126570) Rattus norvegicus clone CH230-32N7, WORKING DRAFT... 36 1.0 7
(CR391929) Zebrafish DNA sequence from clone DKEYP-86B5. 48 1.0 1
(BX682552) Zebrafish DNA sequence from clone DKEY-120C6 in l... 48 1.0 1
(BV388420) S244P616RC4.T0 AlaskaGrayWolf Canis lupus STS gen... 48 1.0 1
(AX384908) Sequence 2 from Patent WO0210455. 48 1.0 1
(AX384907) Sequence 1 from Patent WO0210455. 48 1.0 1
(AR242856) Sequence 2 from patent US 6475739. 48 1.0 1
(AR242855) Sequence 1 from patent US 6475739. 48 1.0 1
(DQ886266) Cryptosporidium hominis isolate 9588 serine repea... 48 1.0 1
(DQ886265) Cryptosporidium hominis isolate 176 serine repeat... 48 1.0 1
(DQ886264) Cryptosporidium hominis isolate 7776 serine repea... 48 1.0 1
(DQ886263) Cryptosporidium hominis isolate 9587 serine repea... 48 1.0 1
(DQ886262) Cryptosporidium hominis isolate 161 serine repeat... 48 1.0 1
(DQ665700) Cryptosporidium hominis isolate 8988 subtype 4 se... 48 1.0 1
(DQ665699) Cryptosporidium hominis isolate 4330 subtype 3 se... 48 1.0 1
(DQ665698) Cryptosporidium hominis isolate 4326 subtype 2 se... 48 1.0 1
(DQ665697) Cryptosporidium hominis isolate 4332 subtype 1 se... 48 1.0 1
(AF397423) Homo sapiens SOST gene, 3' UTR, MEOX1 gene, 5' UT... 48 1.0 1
(AC096729) Homo sapiens BAC clone RP11-63M2 from 4, complete... 48 1.0 1
(AC004149) Homo sapiens chromosome 17, clone hCIT.501_O_10, ... 48 1.0 1
(CU856655) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 1.0 1
(AC073954) Homo sapiens chromosome 17 clone RP11-147C10, WOR... 48 1.0 1
(AC068103) Homo sapiens chromosome 4 clone RP11-181I4 map 4,... 48 1.0 1
(AC179374) Strongylocentrotus purpuratus clone R3-1101P8, WO... 48 1.0 1
(AC177993) Strongylocentrotus purpuratus clone R3-3051M15, W... 48 1.0 1
(AC176918) Strongylocentrotus purpuratus clone R3-33D5, WORK... 48 1.0 1
(AC176030) Strongylocentrotus purpuratus clone R3-3024L18, W... 48 1.0 1
(AZ169902) SP_0114_B2_F04_T7A Strongylocentrotus purpuratus,... 48 1.0 1
(AZ169794) SP_0114_B1_F03_T7A Strongylocentrotus purpuratus,... 48 1.0 1
(AQ793551) HS_5269_A1_C11_T7A RPCI-11 Human Male BAC Library... 48 1.0 1
(DU960407) 231454 Tomato MboI BAC Library Solanum lycopersic... 48 1.0 1
(DY659444) SS_CP_07_C03 SS_CP Senecio squalidus subsp. squal... 48 1.0 1
(AC004153) Plasmodium falciparum chromosome 12 clone 3D7, **... 36 1.3 10
(CU302340) Medicago truncatula chromosome 5 clone mte1-38e12... 34 1.4 11
(EJ650727) 1092953009773 Global-Ocean-Sampling_GS-30-02-01-1... 42 1.4 3
(AC202211) Acyrthosiphon pisum BAC VMRC38-30-A5 (Benaroya R... 40 1.4 6
(EJ662945) 1092955030584 Global-Ocean-Sampling_GS-30-02-01-1... 42 1.4 3
(CR382401) Plasmodium falciparum chromosome 6, complete sequ... 34 1.4 15
(EK207309) 1095460079466 Global-Ocean-Sampling_GS-31-01-01-1... 36 1.4 3
(AC187466) Medicago truncatula chromosome 2 BAC clone mth2-6... 32 1.6 10
(AC068262) Homo sapiens chromosome 4 clone RP11-233D16 map 4... 40 1.6 10
(EJ554044) 1092959481435 Global-Ocean-Sampling_GS-29-01-01-1... 42 1.6 2

>(AY360136) Dictyostelium discoideum putative G protein-coupled
receptor CrlB (crlB) gene, complete cds.
Length = 1555

Score = 1162 bits (586), Expect(2) = 0.0
Identities = 586/586 (100%)
Strand = Plus / Plus


Query: 814 agattttattgcagtatcaggaataattatagaacaattaataattatatttaataaaga 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 agattttattgcagtatcaggaataattatagaacaattaataattatatttaataaaga 840


Query: 874 gatatcaaaatcaattggattttgtattggtgaaagagtttcaattcattttggattatt 933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 gatatcaaaatcaattggattttgtattggtgaaagagtttcaattcattttggattatt 900


Query: 934 ggcaacattattttggtcaaattgtattgcatattatttattaagagaaacttatgaatt 993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 ggcaacattattttggtcaaattgtattgcatattatttattaagagaaacttatgaatt 960


Query: 994 gaaaccatataatattagatttgtttattttcatatagtttgttggggtatggcattgat 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 gaaaccatataatattagatttgtttattttcatatagtttgttggggtatggcattgat 1020


Query: 1054 tggtgttgcaagtttattcttttcaaagattataacagtttcaaatattgatcaaggtgg 1113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 tggtgttgcaagtttattcttttcaaagattataacagtttcaaatattgatcaaggtgg 1080


Query: 1114 tagttggtgttcagtttcatcatcttatcaattatacttttgggtgataccattgtttgt 1173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 tagttggtgttcagtttcatcatcttatcaattatacttttgggtgataccattgtttgt 1140


Query: 1174 ttcattcacttggaatttaatatgttattgtttaatttatagaaagtttaataaaataat 1233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 ttcattcacttggaatttaatatgttattgtttaatttatagaaagtttaataaaataat 1200


Query: 1234 tggaatttatggtattcaatcagtacaaataaaaacaatcatcattagaaaactttcatt 1293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 tggaatttatggtattcaatcagtacaaataaaaacaatcatcattagaaaactttcatt 1260


Query: 1294 ctatttattggcatttttaattacttgggtttgggatgtaattaataattcaattttctt 1353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 ctatttattggcatttttaattacttgggtttgggatgtaattaataattcaattttctt 1320


Query: 1354 atatgaaggaaaatgtccaccatttgcactttggatacttcaagaa 1399
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 atatgaaggaaaatgtccaccatttgcactttggatacttcaagaa 1366

Score = 174 bits (88), Expect(2) = 0.0
Identities = 88/88 (100%)
Strand = Plus / Plus


Query: 1407 cttctggttatggattttttaattctttagcatatgctgttacaactagattctatagta 1466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1374 cttctggttatggattttttaattctttagcatatgctgttacaactagattctatagta 1433


Query: 1467 gaaaatgatttctattataaatagaatg 1494
||||||||||||||||||||||||||||
Sbjct: 1434 gaaaatgatttctattataaatagaatg 1461

Score = 420 bits (212), Expect(5) = 0.0
Identities = 212/212 (100%)
Strand = Plus / Plus


Query: 205 atattttgcaaatttatttggtagtacattatcatttttagcaactattattacaatagt 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 atattttgcaaatttatttggtagtacattatcatttttagcaactattattacaatagt 156


Query: 265 attttatttagttaaaaaatatattcaaaataaatcatttagagaaaatccacaccaata 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 attttatttagttaaaaaatatattcaaaataaatcatttagagaaaatccacaccaata 216


Query: 325 ttgtcatcaacaccaatatttcgattcatcaaaacttaatgaaattaataatagtggagt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 ttgtcatcaacaccaatatttcgattcatcaaaacttaatgaaattaataatagtggagt 276


Query: 385 tggttcatattcatcaactccaatctcaattc 416
||||||||||||||||||||||||||||||||
Sbjct: 277 tggttcatattcatcaactccaatctcaattc 308

Score = 272 bits (137), Expect(5) = 0.0
Identities = 137/137 (100%)
Strand = Plus / Plus


Query: 604 tcaacaaaccctatcatcatctgataaaaacaatacaattccatcaacaaatacaaaata 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tcaacaaaccctatcatcatctgataaaaacaatacaattccatcaacaaatacaaaata 555


Query: 664 tgaaattgaattatcaattccacaatttaaaggaaacaaatgtgggccaaattgtttact 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tgaaattgaattatcaattccacaatttaaaggaaacaaatgtgggccaaattgtttact 615


Query: 724 tttttcaaatataccac 740
|||||||||||||||||
Sbjct: 616 tttttcaaatataccac 632

Score = 188 bits (95), Expect(5) = 0.0
Identities = 97/98 (98%)
Strand = Plus / Plus


Query: 499 ctatngtaattattcgacatcagcaacttcatcatcatcgagttcatcatcattttcttc 558
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ctattgtaattattcgacatcagcaacttcatcatcatcgagttcatcatcattttcttc 450


Query: 559 gaccaatagtggatcatcatatgaatatcaacaaccac 596
||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gaccaatagtggatcatcatatgaatatcaacaaccac 488

Score = 101 bits (51), Expect(5) = 0.0
Identities = 51/51 (100%)
Strand = Plus / Plus


Query: 147 tgggaggtgatattcatctttgttcaatgattttaggtaaaaatcatttaa 197
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39 tgggaggtgatattcatctttgttcaatgattttaggtaaaaatcatttaa 89

Score = 63.9 bits (32), Expect(5) = 0.0
Identities = 32/32 (100%)
Strand = Plus / Plus


Query: 784 tgacactttaatattttatctttcaatatcag 815
||||||||||||||||||||||||||||||||
Sbjct: 676 tgacactttaatattttatctttcaatatcag 707

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,821,826,815
Number of extensions: 123456171
Number of successful extensions: 10792015
Number of sequences better than 10.0: 264
Length of query: 1587
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1563
Effective length of database: 97,308,875,965
Effective search space: 152093773133295
Effective search space used: 152093773133295
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.10
Homology vs Protein
Query= Contig-U14167-1 (Contig-U14167-1Q) /CSM_Contig/Contig-U14167-1Q.Seq.d
(1587 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q6UUW5) RecName: Full=Cyclic AMP receptor-like protein B; &AY3... 808 0.0
(Q6UUW6) RecName: Full=Cyclic AMP receptor-like protein C; &AY3... 108 7e-22
(Q54U75) RecName: Full=Cyclic AMP receptor-like protein A; 74 2e-11
AY219179_1(AY219179|pid:none) Dictyostelium discoideum putative ... 74 2e-11
AY518271_2(AY518271|pid:none) Dictyostelium minutum SpkA gene, p... 66 4e-09
AB045712_1(AB045712|pid:none) Polysphondylium pallidum gene for ... 65 7e-09
(Q54QV5) RecName: Full=Cyclic AMP receptor-like protein D; 62 5e-08
(Q9TX43) RecName: Full=Cyclic AMP receptor 4; Short=cAM... 62 8e-08
EU797669_1(EU797669|pid:none) Dictyostelium aureostipes strain Y... 61 1e-07
EU797668_1(EU797668|pid:none) Polysphondylium pallidum strain PN... 61 1e-07
A54813(A54813)cAMP receptor CAR4 - slime mold (Dictyostelium dis... 60 2e-07
(P13773) RecName: Full=Cyclic AMP receptor 1; Short=cAM... 58 9e-07
AY518272_1(AY518272|pid:none) Dictyostelium fasciculatum cAMP re... 55 9e-06
AK111880_1(AK111880|pid:none) Oryza sativa Japonica Group cDNA c... 53 3e-05
S55234_1(S55234|pid:none) Dictyostelium discoideum cAMP receptor... 53 4e-05
(P34907) RecName: Full=Cyclic AMP receptor 2; Short=cAM... 53 4e-05
AC007932_17(AC007932|pid:none) Arabidopsis thaliana chromosome 1... 49 4e-04
AY099871_1(AY099871|pid:none) Arabidopsis thaliana putative G pr... 49 5e-04
BC123149_1(BC123149|pid:none) Xenopus laevis G protein-coupled r... 49 7e-04
BC065340_1(BC065340|pid:none) Danio rerio G protein-coupled rece... 49 7e-04
AY839644_1(AY839644|pid:none) Dictyostelium rosarium cAMP recept... 47 0.003
AL078638_16(AL078638|pid:none) Human DNA sequence from clone RP1... 46 0.004
(Q54MC6) RecName: Full=Latrophilin receptor-like protein A; 46 0.004
BC100046_1(BC100046|pid:none) Danio rerio G protein-coupled rece... 46 0.004
AL078638_14(AL078638|pid:none) Human DNA sequence from clone RP1... 46 0.004
AY882585_1(AY882585|pid:none) Homo sapiens G protein-coupled rec... 46 0.004
(Q54WN6) RecName: Full=Cyclic AMP receptor-like protein G; 44 0.013
EU797667_1(EU797667|pid:none) Acytostelium subglobosum strain LB... 44 0.017
(P51810) RecName: Full=G-protein coupled receptor 143; AltName: ... 43 0.028
EU797663_1(EU797663|pid:none) Dictyostelium gloeosporum strain T... 42 0.063
AP003089_18(AP003089|pid:none) Staphylococcus aureus E-1, EDINA ... 42 0.082
A68563_1(A68563|pid:none) Sequence 2 from Patent WO9800545. 41 0.11
(Q54GG1) RecName: Full=Cyclic AMP receptor-like protein F; 40 0.24
EU797660_1(EU797660|pid:none) Acytostelium anastomosans strain P... 40 0.31
U63918_1(U63918|pid:none) Mus musculus ocular albanism 1 protein... 40 0.31
EU797657_1(EU797657|pid:none) Polysphondylium violaceum strain P... 40 0.31
(Q5FVG1) RecName: Full=Probable G-protein coupled receptor 157; ... 39 0.41
BX950851_3637(BX950851|pid:none) Erwinia carotovora subsp. atros... 39 0.53
AK154291_1(AK154291|pid:none) Mus musculus NOD-derived CD11c +ve... 39 0.53
AK089429_1(AK089429|pid:none) Mus musculus B6-derived CD11 +ve d... 39 0.53
(Q8CJ11) RecName: Full=G-protein coupled receptor 64; AltName: F... 39 0.70
AF538959_1(AF538959|pid:none) Rattus norvegicus Re6 receptor spl... 39 0.70
AY768808_1(AY768808|pid:none) Homo sapiens G protein-coupled rec... 39 0.70
BC022360_1(BC022360|pid:none) Homo sapiens transmembrane protein... 38 0.91
AX191538_1(AX191538|pid:none) Sequence 60 from Patent WO0149728. 38 0.91
(Q8NCL8) RecName: Full=Transmembrane protein 116; &AK074648_1(A... 38 0.91
BC070135_1(BC070135|pid:none) Homo sapiens transmembrane protein... 38 0.91
AL731801_4(AL731801|pid:none) Mouse DNA sequence from clone RP23... 38 1.2
AF538956_1(AF538956|pid:none) Mus musculus Me6 receptor splice v... 38 1.2
AL731801_5(AL731801|pid:none) Mouse DNA sequence from clone RP23... 38 1.2
AE016879_1578(AE016879|pid:none) Bacillus anthracis str. Ames, c... 37 1.6
CP000227_1631(CP000227|pid:none) Bacillus cereus Q1, complete ge... 37 1.6
AK046871_1(AK046871|pid:none) Mus musculus 10 days neonate medul... 37 1.6
EU797662_1(EU797662|pid:none) Polysphondylium pseudocandidum str... 37 1.6
(Q8IYL9) RecName: Full=Psychosine receptor; AltName: Full=G-prot... 37 2.0
(Q9VSE7) RecName: Full=Probable G-protein coupled receptor Mth-l... 37 2.7
BX936398_374(BX936398|pid:none) Yersinia pseudotuberculosis IP32... 37 2.7
AE014296_1464(AE014296|pid:none) Drosophila melanogaster chromos... 37 2.7
(Q9V818) RecName: Full=Probable G-protein coupled receptor Mth-l... 33 3.4
CU928180_632(CU928180|pid:none) Kluyveromyces thermotolerans str... 36 3.5
AB018440_12(AB018440|pid:none) Echinococcus multilocularis mitoc... 36 3.5
AL732509_5(AL732509|pid:none) Human DNA sequence from clone CTD-... 35 5.9
AL732509_4(AL732509|pid:none) Human DNA sequence from clone CTD-... 35 5.9
(Q8IZP3) RecName: Full=G-protein coupled receptor 64; AltName: F... 35 5.9
BC113978_1(BC113978|pid:none) Homo sapiens G protein-coupled rec... 35 5.9
CS223389_1(CS223389|pid:none) Sequence 27 from Patent WO20051103... 35 5.9
AY143366_1(AY143366|pid:none) Homo sapiens HE6 heptahelical rece... 35 5.9
AF539456_1(AF539456|pid:none) Homo sapiens HE6 receptor splice v... 35 5.9
AF538954_1(AF538954|pid:none) Homo sapiens HE6 receptor long spl... 35 5.9
AL732509_6(AL732509|pid:none) Human DNA sequence from clone CTD-... 35 5.9
FJ195366_5(FJ195366|pid:none) Bos taurus Y-linked ubiquitin-spec... 35 5.9
AK291012_1(AK291012|pid:none) Homo sapiens cDNA FLJ77493 complet... 35 5.9
AL732509_2(AL732509|pid:none) Human DNA sequence from clone CTD-... 35 5.9
A93546_1(A93546|pid:none) Sequence 1 from Patent EP0805204. 35 5.9
AF539455_1(AF539455|pid:none) Homo sapiens HE6 receptor splice v... 35 5.9
AY143367_1(AY143367|pid:none) Homo sapiens HE6 heptahelical rece... 35 5.9
(Q9GT50) RecName: Full=G-protein coupled receptor Mth; AltName: ... 35 7.7
AF280587_1(AF280587|pid:none) Drosophila yakuba strain yak_4 met... 35 7.7
AF280589_1(AF280589|pid:none) Drosophila yakuba strain yak_8 met... 35 7.7
AC183495_25(AC183495|pid:none) Brassica oleracea Contig A, compl... 35 7.7
AY121676_1(AY121676|pid:none) Drosophila melanogaster RE27241 fu... 35 7.7
EU003442_6(EU003442|pid:none) Rhodothermus marinus strain ITI378... 35 7.7
(Q9VGG8) RecName: Full=Probable G-protein coupled receptor Mth-l... 35 7.7
EU797656_1(EU797656|pid:none) Dictyostelium mucoroides strain TN... 35 7.7
AY181516_1(AY181516|pid:none) Paranoplocephala sp. VH-2003 cytoc... 35 7.7
(Q5IS53) RecName: Full=Muscarinic acetylcholine receptor M5; &(... 35 7.7
AY737007_1(AY737007|pid:none) Entamoeba invadens chitin synthase... 35 7.7

>(Q6UUW5) RecName: Full=Cyclic AMP receptor-like protein B;
&AY360136_1(AY360136|pid:none)
Length = 442

Score = 808 bits (2086), Expect = 0.0
Identities = 400/442 (90%), Positives = 400/442 (90%)
Frame = +2

Query: 146 MGGDIHLCSMILGKNHLIFLYFANLFGSTLSFLATIITIVFYLVKKYIQNKSFRENPHQY 325
MGGDIHLCSMILGKNHLIFLYFANLFGSTLSFLATIITIVFYLVKKYIQNKSFRENPHQY
Sbjct: 1 MGGDIHLCSMILGKNHLIFLYFANLFGSTLSFLATIITIVFYLVKKYIQNKSFRENPHQY 60

Query: 326 CHQHQYFDSSKLNEINNSGVGSYSSTPISIXXXXXXXXXXXXXXXXXXXPLINKNHNNYX 505
CHQHQYFDSSKLNEINNSGVGSYSSTPISI PLINKNHNNY
Sbjct: 61 CHQHQYFDSSKLNEINNSGVGSYSSTPISIQNNNNKNNNLPKQKNNEKQPLINKNHNNYC 120

Query: 506 NYXXXXXXXXXXXXXXXXXXXXXXYEYQQPQKNQQTLSSSDKNNTIPSTNTKYEIELSIP 685
NY YEYQQPQKNQQTLSSSDKNNTIPSTNTKYEIELSIP
Sbjct: 121 NYSTSATSSSSSSSSFSSTNSGSSYEYQQPQKNQQTLSSSDKNNTIPSTNTKYEIELSIP 180

Query: 686 QFKGNKCGPNCLLFSNIPQIKNALEQKKNPKKIDTLIFYLSISDFIAVSGIIIEQLIIIF 865
QFKGNKCGPNCLLFSNIPQIKNALEQKKNPKKIDTLIFYLSISDFIAVSGIIIEQLIIIF
Sbjct: 181 QFKGNKCGPNCLLFSNIPQIKNALEQKKNPKKIDTLIFYLSISDFIAVSGIIIEQLIIIF 240

Query: 866 NKEISKSIGFCIGERVSIHFGLLATLFWSNCIAYYLLRETYELKPYNIRFVYFHIVCWGM 1045
NKEISKSIGFCIGERVSIHFGLLATLFWSNCIAYYLLRETYELKPYNIRFVYFHIVCWGM
Sbjct: 241 NKEISKSIGFCIGERVSIHFGLLATLFWSNCIAYYLLRETYELKPYNIRFVYFHIVCWGM 300

Query: 1046 ALIGVASLFFSKIITVSNIDQGGSWCSVSSSYQLYFWVIPLFVSFTWNLICYCLIYRKFN 1225
ALIGVASLFFSKIITVSNIDQGGSWCSVSSSYQLYFWVIPLFVSFTWNLICYCLIYRKFN
Sbjct: 301 ALIGVASLFFSKIITVSNIDQGGSWCSVSSSYQLYFWVIPLFVSFTWNLICYCLIYRKFN 360

Query: 1226 KIIGIYGIQSVQIKTIIIRKLSFYLLAFLITWVWDVINNSIFLYEGKCPPFALWILQEFF 1405
KIIGIYGIQSVQIKTIIIRKLSFYLLAFLITWVWDVINNSIFLYEGKCPPFALWILQEFF
Sbjct: 361 KIIGIYGIQSVQIKTIIIRKLSFYLLAFLITWVWDVINNSIFLYEGKCPPFALWILQEFF 420

Query: 1406 SSGYGFFNSLAYAVTTRFYSRK 1471
SSGYGFFNSLAYAVTTRFYSRK
Sbjct: 421 SSGYGFFNSLAYAVTTRFYSRK 442

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,833,062,557
Number of extensions: 33861668
Number of successful extensions: 88463
Number of sequences better than 10.0: 87
Number of HSP's gapped: 88319
Number of HSP's successfully gapped: 89
Length of query: 529
Length of database: 1,051,180,864
Length adjustment: 133
Effective length of query: 396
Effective length of database: 620,718,517
Effective search space: 245804532732
Effective search space used: 245804532732
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.03 gvh: 0.62 alm: 0.27 top: 0.70 tms: 0.33 mit: 0.30 mip: 0.13
nuc: 0.40 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 1.00 m_ : 0.00

40.0 %: plasma membrane
16.0 %: vacuolar
16.0 %: nuclear
16.0 %: endoplasmic reticulum
8.0 %: mitochondrial
4.0 %: Golgi

>> prediction for Contig-U14167-1 is pla

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0