Contig-U14167-1 |
Contig ID |
Contig-U14167-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
no gap |
Contig length |
1587 |
Chromosome number (1..6, M) |
5 |
Chromosome length |
5062330 |
Start point |
2699776 |
End point |
2701364 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
3 |
Number of EST |
4 |
Link to clone list |
U14167 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.12.18 |
Homology vs DNA |
Query= Contig-U14167-1 (Contig-U14167-1Q) /CSM_Contig/Contig-U14167-1Q.Seq.d (1587 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AY360136) Dictyostelium discoideum putative G protein-coupl... 1162 0.0 2 (BJ371826) Dictyostelium discoideum cDNA clone:ddc1l16, 3' e... 1035 0.0 1 (AU039058) Dictyostelium discoideum slug cDNA, clone SSM331. 932 0.0 2 (AU072537) Dictyostelium discoideum slug cDNA, clone SSE818. 174 2e-55 2 (AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 36 3e-06 14 (AL844506) Plasmodium falciparum chromosome 7. 36 6e-04 19 (AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 36 0.003 22 (AY653733) Acanthamoeba polyphaga mimivirus, complete genome. 34 0.005 27 (CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 36 0.008 21 (CU914525) S.lycopersicum DNA sequence from clone LE_HBa-149... 38 0.010 5 (DU848092) 33124 Tomato HindIII BAC Library Solanum lycopers... 54 0.017 1 (AM180355) Clostridium difficile 630 complete genome. 36 0.019 17 (FH013081) CHO_OF412xf10f2.ab1 CHO_OF Nicotiana tabacum geno... 38 0.021 3 (FH013154) CHO_OF412xf10r1.ab1 CHO_OF Nicotiana tabacum geno... 38 0.025 3 (AC132137) Mus musculus BAC clone RP23-153E2 from 3, complet... 38 0.037 8 (AE014817) Plasmodium falciparum 3D7 chromosome 14 section 2... 36 0.042 14 (AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 38 0.042 14 (AE014852) Plasmodium falciparum 3D7 chromosome 12, section ... 36 0.053 13 (AL844509) Plasmodium falciparum chromosome 13. 34 0.057 18 (CP000312) Clostridium perfringens SM101, complete genome. 38 0.060 20 (AX344569) Sequence 20 from Patent WO0200932. 42 0.063 10 (AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 38 0.063 13 (AE014847) Plasmodium falciparum 3D7 chromosome 12, section ... 32 0.066 16 (AC115581) Dictyostelium discoideum chromosome 2 map complem... 34 0.069 9 (AE000787) Borrelia burgdorferi B31 plasmid lp38, complete s... 42 0.075 6 (CP000102) Methanosphaera stadtmanae DSM 3091, complete genome. 34 0.082 20 (CP000246) Clostridium perfringens ATCC 13124, complete genome. 42 0.084 19 (CR382400) Plasmodium falciparum chromosome 6, complete sequ... 32 0.098 16 (CR382398) Plasmodium falciparum chromosome 6, complete sequ... 36 0.11 15 (AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 32 0.12 15 (AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 30 0.14 17 (AM285320) Spiroplasma citri GII3-3X chromosome, contig Cont... 36 0.17 10 (CP000728) Clostridium botulinum F str. Langeland, complete ... 36 0.20 20 (CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl... 36 0.20 18 (AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 38 0.22 20 (CT867948) Zebrafish DNA sequence from clone CH211-79K12 in ... 50 0.26 1 (AC216469) Populus trichocarpa clone POP036-C22, complete se... 50 0.26 1 (DY226764) ID0AAI9YE12RM1 ID0AEE Acyrthosiphon pisum cDNA cl... 50 0.26 1 (AE014848) Plasmodium falciparum 3D7 chromosome 12, section ... 36 0.27 12 (CP000727) Clostridium botulinum A str. Hall, complete genome. 36 0.29 21 (AC114263) Dictyostelium discoideum chromosome 2 map 215673-... 32 0.36 11 (EJ425783) 1093012271342 Global-Ocean-Sampling_GS-28-01-01-1... 32 0.40 3 (EJ221496) 1092351238185 Global-Ocean-Sampling_GS-27-01-01-1... 32 0.41 3 (AL031749) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 40 0.43 6 (AC119418) Medicago truncatula clone mth1-23l16, complete se... 38 0.43 8 (AC006280) Plasmodium falciparum chromosome 12 clone 3D7, **... 30 0.46 15 (AC006279) Plasmodium falciparum chromosome 12 clone 3D7, **... 36 0.66 13 (AC125390) Medicago truncatula clone mth2-17c11, complete se... 32 0.68 10 (AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 32 0.69 12 (CP000395) Borrelia afzelii PKo, complete genome. 40 0.72 18 (AP000081) Homo sapiens genomic DNA, chromosome 8p11.2, sene... 42 0.74 3 (AC140987) Rattus norvegicus clone CH230-237F12, WORKING DRA... 36 0.74 7 (AC209100) Populus trichocarpa clone POP042-C19, complete se... 32 0.77 10 (CP000726) Clostridium botulinum A str. ATCC 19397, complete... 36 0.82 20 (CT967937) Equus caballus GSS, BAC clone CH241-41O9, T7 end ... 46 0.86 2 (AM412317) Clostridium botulinum A str. ATCC 3502 complete g... 36 0.88 20 (AC189414) Brassica rapa subsp. pekinensis clone KBrB061K11,... 36 0.89 8 (EU275727) Dictyostelium fasciculatum strain SH3 mitochondri... 34 0.91 7 (AC126570) Rattus norvegicus clone CH230-32N7, WORKING DRAFT... 36 1.0 7 (CR391929) Zebrafish DNA sequence from clone DKEYP-86B5. 48 1.0 1 (BX682552) Zebrafish DNA sequence from clone DKEY-120C6 in l... 48 1.0 1 (BV388420) S244P616RC4.T0 AlaskaGrayWolf Canis lupus STS gen... 48 1.0 1 (AX384908) Sequence 2 from Patent WO0210455. 48 1.0 1 (AX384907) Sequence 1 from Patent WO0210455. 48 1.0 1 (AR242856) Sequence 2 from patent US 6475739. 48 1.0 1 (AR242855) Sequence 1 from patent US 6475739. 48 1.0 1 (DQ886266) Cryptosporidium hominis isolate 9588 serine repea... 48 1.0 1 (DQ886265) Cryptosporidium hominis isolate 176 serine repeat... 48 1.0 1 (DQ886264) Cryptosporidium hominis isolate 7776 serine repea... 48 1.0 1 (DQ886263) Cryptosporidium hominis isolate 9587 serine repea... 48 1.0 1 (DQ886262) Cryptosporidium hominis isolate 161 serine repeat... 48 1.0 1 (DQ665700) Cryptosporidium hominis isolate 8988 subtype 4 se... 48 1.0 1 (DQ665699) Cryptosporidium hominis isolate 4330 subtype 3 se... 48 1.0 1 (DQ665698) Cryptosporidium hominis isolate 4326 subtype 2 se... 48 1.0 1 (DQ665697) Cryptosporidium hominis isolate 4332 subtype 1 se... 48 1.0 1 (AF397423) Homo sapiens SOST gene, 3' UTR, MEOX1 gene, 5' UT... 48 1.0 1 (AC096729) Homo sapiens BAC clone RP11-63M2 from 4, complete... 48 1.0 1 (AC004149) Homo sapiens chromosome 17, clone hCIT.501_O_10, ... 48 1.0 1 (CU856655) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 1.0 1 (AC073954) Homo sapiens chromosome 17 clone RP11-147C10, WOR... 48 1.0 1 (AC068103) Homo sapiens chromosome 4 clone RP11-181I4 map 4,... 48 1.0 1 (AC179374) Strongylocentrotus purpuratus clone R3-1101P8, WO... 48 1.0 1 (AC177993) Strongylocentrotus purpuratus clone R3-3051M15, W... 48 1.0 1 (AC176918) Strongylocentrotus purpuratus clone R3-33D5, WORK... 48 1.0 1 (AC176030) Strongylocentrotus purpuratus clone R3-3024L18, W... 48 1.0 1 (AZ169902) SP_0114_B2_F04_T7A Strongylocentrotus purpuratus,... 48 1.0 1 (AZ169794) SP_0114_B1_F03_T7A Strongylocentrotus purpuratus,... 48 1.0 1 (AQ793551) HS_5269_A1_C11_T7A RPCI-11 Human Male BAC Library... 48 1.0 1 (DU960407) 231454 Tomato MboI BAC Library Solanum lycopersic... 48 1.0 1 (DY659444) SS_CP_07_C03 SS_CP Senecio squalidus subsp. squal... 48 1.0 1 (AC004153) Plasmodium falciparum chromosome 12 clone 3D7, **... 36 1.3 10 (CU302340) Medicago truncatula chromosome 5 clone mte1-38e12... 34 1.4 11 (EJ650727) 1092953009773 Global-Ocean-Sampling_GS-30-02-01-1... 42 1.4 3 (AC202211) Acyrthosiphon pisum BAC VMRC38-30-A5 (Benaroya R... 40 1.4 6 (EJ662945) 1092955030584 Global-Ocean-Sampling_GS-30-02-01-1... 42 1.4 3 (CR382401) Plasmodium falciparum chromosome 6, complete sequ... 34 1.4 15 (EK207309) 1095460079466 Global-Ocean-Sampling_GS-31-01-01-1... 36 1.4 3 (AC187466) Medicago truncatula chromosome 2 BAC clone mth2-6... 32 1.6 10 (AC068262) Homo sapiens chromosome 4 clone RP11-233D16 map 4... 40 1.6 10 (EJ554044) 1092959481435 Global-Ocean-Sampling_GS-29-01-01-1... 42 1.6 2
>(AY360136) Dictyostelium discoideum putative G protein-coupled receptor CrlB (crlB) gene, complete cds. Length = 1555
Score = 1162 bits (586), Expect(2) = 0.0 Identities = 586/586 (100%) Strand = Plus / Plus
Query: 814 agattttattgcagtatcaggaataattatagaacaattaataattatatttaataaaga 873 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 781 agattttattgcagtatcaggaataattatagaacaattaataattatatttaataaaga 840
Query: 874 gatatcaaaatcaattggattttgtattggtgaaagagtttcaattcattttggattatt 933 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 841 gatatcaaaatcaattggattttgtattggtgaaagagtttcaattcattttggattatt 900
Query: 934 ggcaacattattttggtcaaattgtattgcatattatttattaagagaaacttatgaatt 993 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 901 ggcaacattattttggtcaaattgtattgcatattatttattaagagaaacttatgaatt 960
Query: 994 gaaaccatataatattagatttgtttattttcatatagtttgttggggtatggcattgat 1053 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 961 gaaaccatataatattagatttgtttattttcatatagtttgttggggtatggcattgat 1020
Query: 1054 tggtgttgcaagtttattcttttcaaagattataacagtttcaaatattgatcaaggtgg 1113 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1021 tggtgttgcaagtttattcttttcaaagattataacagtttcaaatattgatcaaggtgg 1080
Query: 1114 tagttggtgttcagtttcatcatcttatcaattatacttttgggtgataccattgtttgt 1173 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1081 tagttggtgttcagtttcatcatcttatcaattatacttttgggtgataccattgtttgt 1140
Query: 1174 ttcattcacttggaatttaatatgttattgtttaatttatagaaagtttaataaaataat 1233 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1141 ttcattcacttggaatttaatatgttattgtttaatttatagaaagtttaataaaataat 1200
Query: 1234 tggaatttatggtattcaatcagtacaaataaaaacaatcatcattagaaaactttcatt 1293 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1201 tggaatttatggtattcaatcagtacaaataaaaacaatcatcattagaaaactttcatt 1260
Query: 1294 ctatttattggcatttttaattacttgggtttgggatgtaattaataattcaattttctt 1353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1261 ctatttattggcatttttaattacttgggtttgggatgtaattaataattcaattttctt 1320
Query: 1354 atatgaaggaaaatgtccaccatttgcactttggatacttcaagaa 1399 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1321 atatgaaggaaaatgtccaccatttgcactttggatacttcaagaa 1366
Score = 174 bits (88), Expect(2) = 0.0 Identities = 88/88 (100%) Strand = Plus / Plus
Query: 1407 cttctggttatggattttttaattctttagcatatgctgttacaactagattctatagta 1466 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1374 cttctggttatggattttttaattctttagcatatgctgttacaactagattctatagta 1433
Query: 1467 gaaaatgatttctattataaatagaatg 1494 |||||||||||||||||||||||||||| Sbjct: 1434 gaaaatgatttctattataaatagaatg 1461
Score = 420 bits (212), Expect(5) = 0.0 Identities = 212/212 (100%) Strand = Plus / Plus
Query: 205 atattttgcaaatttatttggtagtacattatcatttttagcaactattattacaatagt 264 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 97 atattttgcaaatttatttggtagtacattatcatttttagcaactattattacaatagt 156
Query: 265 attttatttagttaaaaaatatattcaaaataaatcatttagagaaaatccacaccaata 324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 157 attttatttagttaaaaaatatattcaaaataaatcatttagagaaaatccacaccaata 216
Query: 325 ttgtcatcaacaccaatatttcgattcatcaaaacttaatgaaattaataatagtggagt 384 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 217 ttgtcatcaacaccaatatttcgattcatcaaaacttaatgaaattaataatagtggagt 276
Query: 385 tggttcatattcatcaactccaatctcaattc 416 |||||||||||||||||||||||||||||||| Sbjct: 277 tggttcatattcatcaactccaatctcaattc 308
Score = 272 bits (137), Expect(5) = 0.0 Identities = 137/137 (100%) Strand = Plus / Plus
Query: 604 tcaacaaaccctatcatcatctgataaaaacaatacaattccatcaacaaatacaaaata 663 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 496 tcaacaaaccctatcatcatctgataaaaacaatacaattccatcaacaaatacaaaata 555
Query: 664 tgaaattgaattatcaattccacaatttaaaggaaacaaatgtgggccaaattgtttact 723 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 556 tgaaattgaattatcaattccacaatttaaaggaaacaaatgtgggccaaattgtttact 615
Query: 724 tttttcaaatataccac 740 ||||||||||||||||| Sbjct: 616 tttttcaaatataccac 632
Score = 188 bits (95), Expect(5) = 0.0 Identities = 97/98 (98%) Strand = Plus / Plus
Query: 499 ctatngtaattattcgacatcagcaacttcatcatcatcgagttcatcatcattttcttc 558 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 391 ctattgtaattattcgacatcagcaacttcatcatcatcgagttcatcatcattttcttc 450
Query: 559 gaccaatagtggatcatcatatgaatatcaacaaccac 596 |||||||||||||||||||||||||||||||||||||| Sbjct: 451 gaccaatagtggatcatcatatgaatatcaacaaccac 488
Score = 101 bits (51), Expect(5) = 0.0 Identities = 51/51 (100%) Strand = Plus / Plus
Query: 147 tgggaggtgatattcatctttgttcaatgattttaggtaaaaatcatttaa 197 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 39 tgggaggtgatattcatctttgttcaatgattttaggtaaaaatcatttaa 89
Score = 63.9 bits (32), Expect(5) = 0.0 Identities = 32/32 (100%) Strand = Plus / Plus
Query: 784 tgacactttaatattttatctttcaatatcag 815 |||||||||||||||||||||||||||||||| Sbjct: 676 tgacactttaatattttatctttcaatatcag 707
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,821,826,815 Number of extensions: 123456171 Number of successful extensions: 10792015 Number of sequences better than 10.0: 264 Length of query: 1587 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1563 Effective length of database: 97,308,875,965 Effective search space: 152093773133295 Effective search space used: 152093773133295 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7.10 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
2 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
1 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |