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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U02496-1
Contig ID Contig-U02496-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U02496-1 (Contig-U02496-1Q) /CSM_Contig/Contig-U02496-1Q.Seq.d
TAGAGGTTTACATTTTGATGTAAATCATGGTTTATTAATGAAATTAGATT
ATTTAAATAATATTCAAGCAGGTGCAATTTATCATGGAAGAAGACCATTG
ACAAAAGAAGAGGTAATTCAAATTTATGGATCAATGCAATTGAAAAGACT
TTATTGTGATAGTTTTTTAAAACCAATGAGTGATATATTTTGTTTACCAG
AAGCTTGTTTAATTGCAAATACTATTCAATATTTAACAGATCATAATTTA
GCATTTGAACCAAGAATCATTCATGAAGATGTTACTGCAGCTGTTGGTAA
AGTTCATTTAGGTGGTGGTTTACATAATAAAATCATCTCTGATTTTCCAC
TTTATTTAAACAAACATCCATTATTAGGTGAATTTTTATTAAAATTAAAA
TCACATGGTAAAAAATTATTTTTATTAACAAATAATTCATACTTTTATGC
AAATCATGGTATGAAATATTTATTAAATGATCAATTGAATGGAAAATATG
AAGATTGGACAGATGTATTTGATGTGATTATTACAAAATGTGATAAACCA
TCATTCTTTGGTAAAGGTAGACCATTTAGAATGTATCATCCAGATTCAGA
TAGATATGATTGGAATGAAGTTAATCATTTCGAACCAAAGAAAGTTTATG
TTGGTGGAAGTTTAAAACAATTTACAAATGTCAGTAAATGGCGTGGTAGA
AGTGTAATGTATTTTGGTGATCATCTTTATTCAGATTTAGTTGAACCTTC
TCAAAAAGAAGGTTGGAAAACTGGTGTTATCATTAAAGAATTGGAAGTTG
AAGTTGGTATTCAAAATTCCCCAAAATATAGAGAACAATTAGCTGAATTA
TTACAACTTGAAGATGTTATTAGAAAATGTCAATTTTTTTCAGGTGAAAA
GAAAGAATTATTTTTAGAACAACTCAAAACAGAAAGATATAAAAAACGTT
TAGCATTAAAAGAACCATTCAATGCAAATTTTGGTAGTTTATTTAGAACT
CATACAAACGCAACAATATTTGCTTCANCCCAANAAANAA
Gap no gap
Contig length 1040
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 6093409
End point 6092369
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U02496
List of clone(s) 

est1=AFC541E,1,1041
Translated Amino Acid sequence 
RGLHFDVNHGLLMKLDYLNNIQAGAIYHGRRPLTKEEVIQIYGSMQLKRLYCDSFLKPMS
DIFCLPEACLIANTIQYLTDHNLAFEPRIIHEDVTAAVGKVHLGGGLHNKIISDFPLYLN
KHPLLGEFLLKLKSHGKKLFLLTNNSYFYANHGMKYLLNDQLNGKYEDWTDVFDVIITKC
DKPSFFGKGRPFRMYHPDSDRYDWNEVNHFEPKKVYVGGSLKQFTNVSKWRGRSVMYFGD
HLYSDLVEPSQKEGWKTGVIIKELEVEVGIQNSPKYREQLAELLQLEDVIRKCQFFSGEK
KELFLEQLKTERYKKRLALKEPFNANFGSLFRTHTNATIFASXQXX
Translated Amino Acid sequence (All Frames) 
Frame A:
*rftf*ckswfineirlfk*yssrcnlswkktidkrrgnsnlwinaiektll**ffktne
*yilftrslfnckyysifnrs*fsi*tknhs*rcycscw*ssfrwwft**nhl*fstlfk
qtsiir*ifikikitw*kiifink*fillckswyeifik*siewki*rldrci*cdyykm
**tiilw*r*ti*nvssrfr*i*le*s*sfrtkeslcwwkfktiykcq*maw*kcnvfw*
sslfrfs*tfskrrlenwcyh*rigs*swyskfpki*rtis*iitt*rcy*kmsiffr*k
eriifrttqnrki*ktfsikrtiqckfw*fi*nsykrnnicfxpxx


Frame B:
RGLHFDVNHGLLMKLDYLNNIQAGAIYHGRRPLTKEEVIQIYGSMQLKRLYCDSFLKPMS
DIFCLPEACLIANTIQYLTDHNLAFEPRIIHEDVTAAVGKVHLGGGLHNKIISDFPLYLN
KHPLLGEFLLKLKSHGKKLFLLTNNSYFYANHGMKYLLNDQLNGKYEDWTDVFDVIITKC
DKPSFFGKGRPFRMYHPDSDRYDWNEVNHFEPKKVYVGGSLKQFTNVSKWRGRSVMYFGD
HLYSDLVEPSQKEGWKTGVIIKELEVEVGIQNSPKYREQLAELLQLEDVIRKCQFFSGEK
KELFLEQLKTERYKKRLALKEPFNANFGSLFRTHTNATIFASXQXX


Frame C:
evyilm*imvy**n*ii*iifkqvqfimeedh*qkkr*fkfmdqcn*kdfivivf*nq*v
iyfvyqklv*lqilfni*qiii*hlnqesfmkmllqllvkfi*vvvyiiksslifhfi*t
nihy*vnfy*n*nhmvknyfy*qiihtfmqimv*niy*min*menmkigqmylm*llqnv
inhhslvkvdhleciiqiqidmigmkliisnqrkfmlvev*nnlqmsvngvvev*cilvi
ifiqi*lnllkkkvgklvlslknwklklvfkipqnienn*lnyynlkmllenvnffqvkr
knyf*nnskqkdiknv*h*knhsmqilvvyleliqtqqyllxpxkx
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U02496-1 (Contig-U02496-1Q)
/CSM_Contig/Contig-U02496-1Q.Seq.d
         (1040 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U02496-1 (Contig-U02496-1Q) /CSM_Contig/Conti...  2002  0.0
Contig-U09887-1 (Contig-U09887-1Q) /CSM_Contig/Conti...    46  8e-05
Contig-U03780-1 (Contig-U03780-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U00222-1 (Contig-U00222-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U13384-1 (Contig-U13384-1Q) /CSM_Contig/Conti...    38  0.019
Contig-U12389-1 (Contig-U12389-1Q) /CSM_Contig/Conti...    38  0.019
Contig-U09732-1 (Contig-U09732-1Q) /CSM_Contig/Conti...    38  0.019
Contig-U02870-1 (Contig-U02870-1Q) /CSM_Contig/Conti...    38  0.019
Contig-U12243-1 (Contig-U12243-1Q) /CSM_Contig/Conti...    36  0.073
Contig-U11880-1 (Contig-U11880-1Q) /CSM_Contig/Conti...    36  0.073

>Contig-U02496-1 (Contig-U02496-1Q) /CSM_Contig/Contig-U02496-1Q.Seq.d
          Length = 1040

 Score = 2002 bits (1010), Expect = 0.0
 Identities = 1030/1037 (99%)
 Strand = Plus / Plus

                                                                        
Query: 1    tagaggtttacattttgatgtaaatcatggtttattaatgaaattagattatttaaataa 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    tagaggtttacattttgatgtaaatcatggtttattaatgaaattagattatttaaataa 60

                                                                        
Query: 61   tattcaagcaggtgcaatttatcatggaagaagaccattgacaaaagaagaggtaattca 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   tattcaagcaggtgcaatttatcatggaagaagaccattgacaaaagaagaggtaattca 120

                                                                        
Query: 121  aatttatggatcaatgcaattgaaaagactttattgtgatagttttttaaaaccaatgag 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  aatttatggatcaatgcaattgaaaagactttattgtgatagttttttaaaaccaatgag 180

                                                                        
Query: 181  tgatatattttgtttaccagaagcttgtttaattgcaaatactattcaatatttaacaga 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  tgatatattttgtttaccagaagcttgtttaattgcaaatactattcaatatttaacaga 240

                                                                        
Query: 241  tcataatttagcatttgaaccaagaatcattcatgaagatgttactgcagctgttggtaa 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  tcataatttagcatttgaaccaagaatcattcatgaagatgttactgcagctgttggtaa 300

                                                                        
Query: 301  agttcatttaggtggtggtttacataataaaatcatctctgattttccactttatttaaa 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  agttcatttaggtggtggtttacataataaaatcatctctgattttccactttatttaaa 360

                                                                        
Query: 361  caaacatccattattaggtgaatttttattaaaattaaaatcacatggtaaaaaattatt 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361  caaacatccattattaggtgaatttttattaaaattaaaatcacatggtaaaaaattatt 420

                                                                        
Query: 421  tttattaacaaataattcatacttttatgcaaatcatggtatgaaatatttattaaatga 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421  tttattaacaaataattcatacttttatgcaaatcatggtatgaaatatttattaaatga 480

                                                                        
Query: 481  tcaattgaatggaaaatatgaagattggacagatgtatttgatgtgattattacaaaatg 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  tcaattgaatggaaaatatgaagattggacagatgtatttgatgtgattattacaaaatg 540

                                                                        
Query: 541  tgataaaccatcattctttggtaaaggtagaccatttagaatgtatcatccagattcaga 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  tgataaaccatcattctttggtaaaggtagaccatttagaatgtatcatccagattcaga 600

                                                                        
Query: 601  tagatatgattggaatgaagttaatcatttcgaaccaaagaaagtttatgttggtggaag 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601  tagatatgattggaatgaagttaatcatttcgaaccaaagaaagtttatgttggtggaag 660

                                                                        
Query: 661  tttaaaacaatttacaaatgtcagtaaatggcgtggtagaagtgtaatgtattttggtga 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661  tttaaaacaatttacaaatgtcagtaaatggcgtggtagaagtgtaatgtattttggtga 720

                                                                        
Query: 721  tcatctttattcagatttagttgaaccttctcaaaaagaaggttggaaaactggtgttat 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721  tcatctttattcagatttagttgaaccttctcaaaaagaaggttggaaaactggtgttat 780

                                                                        
Query: 781  cattaaagaattggaagttgaagttggtattcaaaattccccaaaatatagagaacaatt 840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781  cattaaagaattggaagttgaagttggtattcaaaattccccaaaatatagagaacaatt 840

                                                                        
Query: 841  agctgaattattacaacttgaagatgttattagaaaatgtcaannnnnnncaggtgaaaa 900
            |||||||||||||||||||||||||||||||||||||||||||       ||||||||||
Sbjct: 841  agctgaattattacaacttgaagatgttattagaaaatgtcaatttttttcaggtgaaaa 900

                                                                        
Query: 901  gaaagaattatttttagaacaactcaaaacagaaagatataaaaaacgtttagcattaaa 960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901  gaaagaattatttttagaacaactcaaaacagaaagatataaaaaacgtttagcattaaa 960

                                                                        
Query: 961  agaaccattcaatgcaaattttggtagtttatttagaactcatacaaacgcaacaatatt 1020
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961  agaaccattcaatgcaaattttggtagtttatttagaactcatacaaacgcaacaatatt 1020

                             
Query: 1021 tgcttcancccaanaaa 1037
            |||||||||||||||||
Sbjct: 1021 tgcttcancccaanaaa 1037


>Contig-U09887-1 (Contig-U09887-1Q) /CSM_Contig/Contig-U09887-1Q.Seq.d
          Length = 1918

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 199  agaagcttgtttaattgcaaata 221
            |||||||||||||||||||||||
Sbjct: 1623 agaagcttgtttaattgcaaata 1601


 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                            
Query: 51   atttaaataatattca 66
            ||||||||||||||||
Sbjct: 1047 atttaaataatattca 1032


 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 113 gtaattcaaatttat 127
           |||||||||||||||
Sbjct: 904 gtaattcaaatttat 890


>Contig-U03780-1 (Contig-U03780-1Q) /CSM_Contig/Contig-U03780-1Q.Seq.d
          Length = 271

 Score = 40.1 bits (20), Expect = 0.005
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 467 tatttattaaatgatcaattgaat 490
           |||||||| |||||||||||||||
Sbjct: 102 tatttattgaatgatcaattgaat 79


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,931
Number of Sequences: 6905
Number of extensions: 22931
Number of successful extensions: 2902
Number of sequences better than 10.0: 271
length of query: 1040
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1024
effective length of database: 5,564,391
effective search space: 5697936384
effective search space used: 5697936384
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 5.17
Homology vs DNA 
Query= Contig-U02496-1 (Contig-U02496-1Q) /CSM_Contig/Contig-U02496-1Q.Seq.d
         (1040 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ341339) Dictyostelium discoideum cDNA clone:dda6a11, 3' e...   884   0.0    2
(AC114258) Dictyostelium discoideum chromosome 2 map complem...   831   0.0    5
(BJ324421) Dictyostelium discoideum cDNA clone:dda6a11, 5' e...   731   0.0    2
(DN785513) 92941369 Sea Urchin primary mesenchyme cell cDNA ...    38   0.035  2
(AC131369) Rattus norvegicus clone CH230-268G6, *** SEQUENCI...    42   0.061  4
(AC122627) Rattus norvegicus clone CH230-88I24, WORKING DRAF...    42   0.095  4
(AC221769) Bos taurus clone CH240-385K17, WORKING DRAFT SEQU...    46   0.12   4
(DN585066) 90162683 Sea Urchin primary mesenchyme cell cDNA ...    38   0.13   2
(AE017308) Mycoplasma mobile 163K complete genome.                 36   0.13   15
(AC098003) Rattus norvegicus clone CH230-103F13, *** SEQUENC...    50   0.17   1
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    32   0.24   21
(DX524539) GH_MBb0033I09r GH_MBb Gossypium hirsutum genomic ...    38   0.49   2
(FP102373) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.68   1
(CU930009) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.68   1
(CU914681) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.68   1
(AL844506) Plasmodium falciparum chromosome  7.                    48   0.68   1
(CP000875) Herpetosiphon aurantiacus ATCC 23779, complete ge...    48   0.68   1
(ER435070) 1092963793811 Global-Ocean-Sampling_GS-35-01-01-1...    36   0.69   2
(EX014136) HTAB-aac53g09.b1 Heterorhabditis_bacteriophora_HT...    34   0.81   3
(AC005139) Plasmodium falciparum chromosome 12, *** SEQUENCI...    40   1.1    9
(AC141604) Homo sapiens chromosome 16 clone RP11-35F9, WORKI...    34   1.1    7
(AC008506) Homo sapiens chromosome 5 clone CTC-447O6, comple...    38   1.6    6
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214...    34   1.7    8
(AJ307410) Yarrowia lipolytica complete mitochondrial genome.      36   1.8    4
(AZ680193) ENTKX94TF Entamoeba histolytica Sheared DNA Entam...    34   1.8    2
(AE015927) Clostridium tetani E88, complete genome.                34   2.2    21
(AF227510) Homo sapiens chromosome 21 map 21q22.1 clone PAC ...    36   2.2    6
(AC172891) Mus musculus BAC clone RP24-323I12 from chromosom...    46   2.7    1
(AC134864) Mus musculus BAC clone RP24-132O18 from chromosom...    46   2.7    1
(DL264316) METHODS FOR ANALYZING GENES OF INDUSTRIAL YEASTS.       46   2.7    1
(DJ130765) Method for identification of useful proteins deri...    46   2.7    1
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-...    46   2.7    1
(AC162408) Bos taurus clone CH240-119M9, WORKING DRAFT SEQUE...    46   2.7    1
(AC157198) Bos taurus clone CH240-63J9, WORKING DRAFT SEQUEN...    46   2.7    1
(CU655933) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.7    1
(CU469178) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.7    1
(CU302442) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.7    1
(AC222707) Bos taurus clone CH240-441A11, WORKING DRAFT SEQU...    46   2.7    1
(AC203485) Nomascus leucogenys leucogenys clone CH271-247E1,...    46   2.7    1
(AC170049) Pongo abelii clone CH253-36B9, WORKING DRAFT SEQU...    46   2.7    1
(AC169000) Colobus guereza clone CH272-65C17, WORKING DRAFT ...    46   2.7    1
(AC168999) Colobus guereza clone CH272-129K14, WORKING DRAFT...    46   2.7    1
(AC168951) Pongo abelii clone CH253-296N20, WORKING DRAFT SE...    46   2.7    1
(DU843084) 27396 Tomato HindIII BAC Library Solanum lycopers...    46   2.7    1
(CR838367) GR0AAA73BF11FM1 INRA BAC Bos taurus genomic clone...    46   2.7    1
(DY494293) sh2P0012F05_F.ab1 adult sheep fracture callus 7d ...    46   2.7    1
(DC201949) Plasmodium berghei strain ANKA cDNA clone:MG00082...    46   2.7    1
(C94402) Dictyostelium discoideum slug cDNA, clone SSK651.         46   2.7    1
(BJ432933) Dictyostelium discoideum cDNA clone:ddv20d10, 3' ...    46   2.7    1
(BJ346821) Dictyostelium discoideum cDNA clone:dda25m05, 3' ...    46   2.7    1
(BJ345297) Dictyostelium discoideum cDNA clone:dda23b11, 3' ...    46   2.7    1
(BB979459) Plasmodium berghei str. ANKA cDNA clone: OK009545...    46   2.7    1
(BB978748) Plasmodium berghei str. ANKA cDNA clone: OK008801...    46   2.7    1
(AC181575) Strongylocentrotus purpuratus clone R3-9D17, WORK...    38   3.1    6
(AE014850) Plasmodium falciparum 3D7 chromosome 12, section ...    40   3.1    10
(CU463820) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.4    6
(CR293533) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    38   3.7    6
(AC084136) Homo sapiens clone RP13-506N4, WORKING DRAFT SEQU...    38   3.8    6
(AC137598) Oryza sativa Japonica Group chromosome 3 clone OS...    40   4.3    3
(AP004804) Oryza sativa Japonica Group genomic DNA, chromoso...    40   4.8    3
(AC173960) Glycine max clone gmw1-45c9, complete sequence.         38   4.9    7
(AC217947) Zea mays chromosome 4 clone CH201-193P17; ZMMBBc0...    40   5.2    4
(AL445564) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    34   6.1    12
(AC006278) Plasmodium falciparum chromosome 12 clone PFYAC34...    34   6.1    6
(AK082194) Mus musculus 0 day neonate cerebellum cDNA, RIKEN...    38   6.3    2
(FD237007) CBZF25842.g1 CBZF: Normalized blue catfish cDNA l...    36   6.6    2
(FI294347) AdH1033-CPY2-E1TR AdH1 Arachis duranensis genomic...    34   6.9    2
(CW761481) OG_BBa0070N18.f OG_BBa Oryza glaberrima genomic c...    34   7.5    2
(FP089700) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   7.5    5
(AC012434) Homo sapiens clone RP11-10M22, LOW-PASS SEQUENCE ...    42   7.9    6
(AC016334) Homo sapiens clone RP11-30J14, WORKING DRAFT SEQU...    36   8.1    4
(CJ762359) Ipomoea nil cDNA clone:jmsf28i04, 3' end.               36   8.2    2
(AC073606) Homo sapiens 12 BAC RP11-390N6 (Roswell Park Canc...    36   8.2    4
(CJ771153) Ipomoea nil cDNA clone:jmsf41p22, 3' end.               36   9.2    2
(AE014817) Plasmodium falciparum 3D7 chromosome 14 section 2...    36   9.2    10
(AM285313) Spiroplasma citri GII3-3X chromosome, contig Cont...    40   9.4    4

>(BJ341339) Dictyostelium discoideum cDNA clone:dda6a11, 3' end,
           single read.
          Length = 618

 Score =  884 bits (446), Expect(2) = 0.0
 Identities = 446/446 (100%)
 Strand = Plus / Minus


Query: 438 catacttttatgcaaatcatggtatgaaatatttattaaatgatcaattgaatggaaaat 497
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 catacttttatgcaaatcatggtatgaaatatttattaaatgatcaattgaatggaaaat 545


Query: 498 atgaagattggacagatgtatttgatgtgattattacaaaatgtgataaaccatcattct 557
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 atgaagattggacagatgtatttgatgtgattattacaaaatgtgataaaccatcattct 485


Query: 558 ttggtaaaggtagaccatttagaatgtatcatccagattcagatagatatgattggaatg 617
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ttggtaaaggtagaccatttagaatgtatcatccagattcagatagatatgattggaatg 425


Query: 618 aagttaatcatttcgaaccaaagaaagtttatgttggtggaagtttaaaacaatttacaa 677
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 aagttaatcatttcgaaccaaagaaagtttatgttggtggaagtttaaaacaatttacaa 365


Query: 678 atgtcagtaaatggcgtggtagaagtgtaatgtattttggtgatcatctttattcagatt 737
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 atgtcagtaaatggcgtggtagaagtgtaatgtattttggtgatcatctttattcagatt 305


Query: 738 tagttgaaccttctcaaaaagaaggttggaaaactggtgttatcattaaagaattggaag 797
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tagttgaaccttctcaaaaagaaggttggaaaactggtgttatcattaaagaattggaag 245


Query: 798 ttgaagttggtattcaaaattccccaaaatatagagaacaattagctgaattattacaac 857
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ttgaagttggtattcaaaattccccaaaatatagagaacaattagctgaattattacaac 185


Query: 858 ttgaagatgttattagaaaatgtcaa 883
           ||||||||||||||||||||||||||
Sbjct: 184 ttgaagatgttattagaaaatgtcaa 159

 Score =  280 bits (141), Expect(2) = 0.0
 Identities = 147/147 (100%)
 Strand = Plus / Minus


Query: 891  caggtgaaaagaaagaattatttttagaacaactcaaaacagaaagatataaaaaacgtt 950
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151  caggtgaaaagaaagaattatttttagaacaactcaaaacagaaagatataaaaaacgtt 92


Query: 951  tagcattaaaagaaccattcaatgcaaattttggtagtttatttagaactcatacaaacg 1010
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91   tagcattaaaagaaccattcaatgcaaattttggtagtttatttagaactcatacaaacg 32


Query: 1011 caacaatatttgcttcancccaanaaa 1037
            |||||||||||||||||||||||||||
Sbjct: 31   caacaatatttgcttcancccaanaaa 5

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,449,978,958
Number of extensions: 88656107
Number of successful extensions: 7241731
Number of sequences better than 10.0: 78
Length of query: 1040
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 1016
Effective length of database: 99,340,224,878
Effective search space: 100929668476048
Effective search space used: 100929668476048
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.19
Homology vs Protein 
Query= Contig-U02496-1 (Contig-U02496-1Q) /CSM_Contig/Contig-U02496-1Q.Seq.d
         (1040 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT084230_1(BT084230|pid:none) Zea mays full-length cDNA clone ZM...   253   8e-66
AK227911_1(AK227911|pid:none) Arabidopsis thaliana mRNA for hypo...   250   5e-65
BC124327_1(BC124327|pid:none) Danio rerio 5'-nucleotidase domain...   236   7e-61
AK022504_1(AK022504|pid:none) Homo sapiens cDNA FLJ12442 fis, cl...   234   5e-60
BC135978_1(BC135978|pid:none) Xenopus tropicalis hypothetical pr...   231   2e-59
A84630(A84630) hypothetical protein At2g23890 [imported] - Arabi...   231   3e-59
AE013599_898(AE013599|pid:none) Drosophila melanogaster chromoso...   230   7e-59
AE013599_900(AE013599|pid:none) Drosophila melanogaster chromoso...   230   7e-59
AB032773_1(AB032773|pid:none) Homo sapiens mRNA for TU12B1-TY, c...   229   1e-58
(Q86UY8) RecName: Full=5'-nucleotidase domain-containing protein...   229   1e-58
(Q6Q0N3) RecName: Full=5'-nucleotidase domain-containing protein...   229   2e-58
(Q3UHB1) RecName: Full=5'-nucleotidase domain-containing protein...   228   3e-58
AK172248_1(AK172248|pid:none) Mus musculus activated spleen cDNA...   226   1e-57
BC157658_1(BC157658|pid:none) Xenopus tropicalis 5'-nucleotidase...   224   5e-57
BC014550_1(BC014550|pid:none) Homo sapiens 5'-nucleotidase domai...   221   4e-56
AF131781_1(AF131781|pid:none) Homo sapiens clone 24901 mRNA sequ...   218   4e-55
AB032786_1(AB032786|pid:none) Homo sapiens TU12B1-TY gene for TU...   217   6e-55
(A4IHT9) RecName: Full=5'-nucleotidase domain-containing protein...   215   2e-54
BC011230_1(BC011230|pid:none) Mus musculus 5'-nucleotidase domai...   213   7e-54
FN357304_25(FN357304|pid:none) Schistosoma mansoni genome sequen...   189   2e-46
CP000769_1952(CP000769|pid:none) Anaeromyxobacter sp. Fw109-5, c...   163   1e-38
(Q54XC1) RecName: Full=Cytosolic purine 5'-nucleotidase;        ...   162   2e-38
CP001131_1975(CP001131|pid:none) Anaeromyxobacter sp. K, complet...   150   7e-35
CP001359_2055(CP001359|pid:none) Anaeromyxobacter dehalogenans 2...   150   7e-35
AM746676_4318(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...   147   6e-34
AF099002_1(AF099002|pid:none) Caenorhabditis elegans cosmid Y71H...   142   2e-32
T33570(T33570)hypothetical protein Y71H10B.1 - Caenorhabditis el...   142   2e-32
AF099002_3(AF099002|pid:none) Caenorhabditis elegans cosmid Y71H...   140   7e-32
AE014298_2834(AE014298|pid:none) Drosophila melanogaster chromos...   139   2e-31
AE014298_2835(AE014298|pid:none) Drosophila melanogaster chromos...   139   2e-31
AE014298_2830(AE014298|pid:none) Drosophila melanogaster chromos...   139   2e-31
AE014298_2833(AE014298|pid:none) Drosophila melanogaster chromos...   139   2e-31
AY815060_1(AY815060|pid:none) Schistosoma japonicum SJCHGC02464 ...   134   4e-30
FN357413_16(FN357413|pid:none) Schistosoma mansoni genome sequen...   133   9e-30
(Q5EBF1) RecName: Full=Cytosolic purine 5'-nucleotidase;        ...   131   4e-29
(Q86YG4) RecName: Full=5'-nucleotidase domain-containing protein...   125   2e-27
BC064760_1(BC064760|pid:none) Mus musculus 5'-nucleotidase, cyto...   124   5e-27
AK132384_1(AK132384|pid:none) Mus musculus 15 days embryo head c...   124   5e-27
(Q3V1L4) RecName: Full=Cytosolic purine 5'-nucleotidase;        ...   124   5e-27
AK291667_1(AK291667|pid:none) Homo sapiens cDNA FLJ75877 complet...   124   5e-27
AK295593_1(AK295593|pid:none) Homo sapiens cDNA FLJ53335 complet...   124   5e-27
(Q5ZIZ4) RecName: Full=Cytosolic purine 5'-nucleotidase;        ...   124   7e-27
AL928951_7(AL928951|pid:none) Zebrafish DNA sequence from clone ...   124   7e-27
AK036730_1(AK036730|pid:none) Mus musculus adult male bone cDNA,...   123   1e-26
AK066724_1(AK066724|pid:none) Oryza sativa Japonica Group cDNA c...   122   2e-26
AC092781_20(AC092781|pid:none) Oryza sativa chromosome 3 BAC OSJ...   122   2e-26
DQ917529_1(DQ917529|pid:none) Demansia vestigiata 5' nucleotidas...   120   6e-26
AY062524_1(AY062524|pid:none) Arabidopsis thaliana Unknown prote...   120   6e-26
BC049497_1(BC049497|pid:none) Danio rerio 5'-nucleotidase, cytos...   117   5e-25
EU969231_1(EU969231|pid:none) Zea mays clone 327259 cytosolic pu...   117   7e-25
EF147457_1(EF147457|pid:none) Populus trichocarpa clone WS01231_...   110   6e-23
AE017354_94(AE017354|pid:none) Legionella pneumophila subsp. pne...   110   1e-22
AC174352_1(AC174352|pid:none) Medicago truncatula clone mth2-7o1...   109   2e-22
AK065179_1(AK065179|pid:none) Oryza sativa Japonica Group cDNA c...   106   2e-21
EU956580_1(EU956580|pid:none) Zea mays clone 1567128 5-nucleotid...   104   4e-21
BT035484_1(BT035484|pid:none) Zea mays full-length cDNA clone ZM...   104   4e-21
AB168644_1(AB168644|pid:none) Macaca fascicularis testis cDNA cl...   104   6e-21
CP000591_293(CP000591|pid:none) Ostreococcus lucimarinus CCE9901...   100   1e-19
CP000159_2717(CP000159|pid:none) Salinibacter ruber DSM 13855, c...    96   2e-18
CP000113_6918(CP000113|pid:none) Myxococcus xanthus DK 1622, com...    88   4e-16
CP001577_25(CP001577|pid:none) Micromonas sp. RCC299 chromosome ...    85   4e-15
CR954211_309(CR954211|pid:none) Ostreococcus tauri strain OTTH05...    80   2e-13
(Q8C5P5) RecName: Full=5'-nucleotidase domain-containing protein...    72   4e-11
AK077876_1(AK077876|pid:none) Mus musculus 13 days embryo male t...    72   4e-11
BC162021_1(BC162021|pid:none) Rattus norvegicus 5'-nucleotidase ...    70   9e-11
AK164144_1(AK164144|pid:none) Mus musculus adult male hippocampu...    67   1e-09
AK171761_1(AK171761|pid:none) Mus musculus activated spleen cDNA...    67   1e-09
BC098476_1(BC098476|pid:none) Mus musculus 5'-nucleotidase domai...    66   2e-09
AY811536_1(AY811536|pid:none) Schistosoma japonicum SJCHGC08839 ...    64   7e-09
BC073705_1(BC073705|pid:none) Xenopus laevis MGC83639 protein, m...    64   9e-09
BT059435_1(BT059435|pid:none) Salmo salar clone ssal-rgf-519-062...    63   1e-08
AK010966_1(AK010966|pid:none) Mus musculus 13 days embryo liver ...    61   7e-08
BX855610_1(BX855610|pid:none) Zebrafish DNA sequence from clone ...    56   2e-06
AL139817_5(AL139817|pid:none) Human DNA sequence from clone RP11...    55   4e-06
AM459930_3(AM459930|pid:none) Vitis vinifera contig VV78X090328....    55   5e-06
AK002128_1(AK002128|pid:none) Homo sapiens cDNA FLJ11266 fis, cl...    42   0.046
AL121963_1(AL121963|pid:none) Human DNA sequence from clone RP1-...    39   0.23
EU877950_1(EU877950|pid:none) Sphaerius sp. BT0074 mitochondrion...    36   2.5
(Q3A9W6) RecName: Full=Argininosuccinate lyase;          Short=A...    35   3.3
EU002191_1(EU002191|pid:none) Thymelaea hirsuta maturase K (matK...    35   3.3
CP000473_548(CP000473|pid:none) Solibacter usitatus Ellin6076, c...    35   4.3
CU928180_598(CU928180|pid:none) Kluyveromyces thermotolerans str...    35   5.7
DQ020052_1(DQ020052|pid:none) Uncultured organism clone LE3476P8...    34   9.6
EF011627_1(EF011627|pid:none) Stenotrophomonas maltophilia aconi...    34   9.6
AL031745_47(AL031745|pid:none) Plasmodium falciparum DNA from MA...    34   9.6
CP000498_156(CP000498|pid:none) Pichia stipitis CBS 6054 chromos...    34   9.6

>BT084230_1(BT084230|pid:none) Zea mays full-length cDNA clone
            ZM_BFb0091D22 mRNA, complete cds.
          Length = 536

 Score =  253 bits (646), Expect = 8e-66
 Identities = 135/340 (39%), Positives = 204/340 (60%), Gaps = 5/340 (1%)
 Frame = +2

Query: 2    RGLHFDVNHGLLMKLDYLNNIQAGAIYHGRRPLTKEEVIQIYGSMQLKRLYCDSFLKPMS 181
            RGL++D   G L+KLD+  +I+    + GR+ L+  E+ ++YG+  + R      L  +
Sbjct: 144  RGLYYDRLKGCLLKLDFFGSIEPDGCFFGRQRLSLSEIKELYGTRHIGRDQA-RHLVGLM 202

Query: 182  DIFCLPEACLIANTIQYLTDHNLAFEPRIIHEDVTAAVGKVHLGGGLHNKIISDFPLYLN 361
            D+FC  EACLIA+ +Q+  D  L F+P  I+EDV  ++  VH  G +H +I+S+   +L
Sbjct: 203  DVFCFSEACLIADIVQHFIDAKLEFDPSYIYEDVNQSIQHVHRSGLIHRQILSEPEKFLI 262

Query: 362  KHPLLGEFLLKLKSHGKKLFLLTNNSYFYANHGMKYLLNDQLNGKYEDWTDVFDVIITKC 541
            K   +  FL  LK  GKKLFLLTN+ +++ + GM+YLL DQ +     W ++FDV+I +
Sbjct: 263  KKSQVFRFLKMLKEKGKKLFLLTNSPFYFVDGGMRYLLEDQ-HFDGNSWRELFDVVIAQA 321

Query: 542  DKPSFFGKGRPFRMYHPDSDRYDWNEVNHFEPKKVYVGGSLKQFTNVSKWRGRSVMYFGD 721
            +KP+F+    PFR+Y    D   +  V+ F P +VY  G LK F  ++KW+G  V+YFGD
Sbjct: 322  NKPTFYNSDHPFRVYDTQKDTLTFTAVDKFLPDQVYYHGCLKSFLQITKWKGSEVIYFGD 381

Query: 722  HLYSDLVEPSQKEGWKTGVIIKELEVEVGIQNSPKYREQLAELLQLEDVIRK--CQFFSG 895
            HL SDL  PS K GW+T  +I+ELE E+ IQN   YR Q A+L  + D++ K      S
Sbjct: 382  HLLSDLRGPS-KAGWRTAAVIRELEDEIEIQNGDSYRFQQAKLSIIHDLLGKVHAAVVST 440

Query: 896  EKKELF---LEQLKTERYKKRLALKEPFNANFGSLFRTHT 1006
            EK +++   L +L  ER + R  +++ FN +FG+ F T T
Sbjct: 441  EKGQVYKALLNELNAERRQCRSGMRDLFNTSFGATFLTDT 480

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,493,929,214
Number of extensions: 30207753
Number of successful extensions: 84004
Number of sequences better than 10.0: 86
Number of HSP's gapped: 83752
Number of HSP's successfully gapped: 90
Length of query: 346
Length of database: 1,051,180,864
Length adjustment: 129
Effective length of query: 217
Effective length of database: 633,664,753
Effective search space: 137505251401
Effective search space used: 137505251401
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.71  gvh: 0.55  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.08  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi

>> prediction for Contig-U02496-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0