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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U14142-1
Contig ID Contig-U14142-1
Contig update 2002.12.18
Contig sequence 
>Contig-U14142-1 (Contig-U14142-1Q) /CSM_Contig/Contig-U14142-1Q.Seq.d
ANTGAATCGTGGTTCGGTTGCATTTAAATTGCAACCACCAAATTCACCAA
TTACTCATTTCTCTTCAAAATCACCACCATCATCAAAAGGAAATGCAGAT
TTAATGATTGAATTGGTTAGAATGTNTGNGGCAGTTGATAAATTTGTTGG
ATCATTATATGTTCAAGCAATATTANAGACTATATATGTACGTGATTTCT
TTACAAAGGATACACAATTTCCAATATTAATGAAACCTATCGTTGTTAAA
AACAATACATTTGTAAATTCATCTTCAAGAACTCTACCCTATAGTAATAG
TGAAGGTGTANAGGATATAAATAAGGACTATCTATCAATAGTATCATCAT
CACCTTCACCAGTTTCTTCACCATCAAGAGATAAACGATTGGAAGAAGAA
ACTAAACAAGAGGATGAAAAAGAAAAGAAATTAAATGTTGATAAGAATTT
AAAATGCTCATTAAGTAGTATTGAAAAAGTATCATGTGATAAAAAGAGTA
AAGATGANNNNNNNNN
Gap no gap
Contig length 516
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 5227120
End point 5226614
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U14142
List of clone(s) 

est1=AHO872F,1,507
Translated Amino Acid sequence 
XNRGSVAFKLQPPNSPITHFSSKSPPSSKGNADLMIELVRMXXAVDKFVGSLYVQAILXT
IYVRDFFTKDTQFPILMKPIVVKNNTFVNSSSRTLPYSNSEGVXDINKDYLSIVSSSPSP
VSSPSRDKRLEEETKQEDEKEKKLNVDKNLKCSLSSIEKVSCDKKSKDXXX
Translated Amino Acid sequence (All Frames) 
Frame A:
xeswfgci*iattkftnysflfkittiikrkcrfnd*ig*nvxgs**icwiiicssnixd
yict*flykgytisninetyrc*kqyickfifknstl****rcxgyk*glsinsiiitft
sfftikr*tigrrn*trg*krkeikc**efkmlik*y*ksim**ke*r*xxx


Frame B:
XNRGSVAFKLQPPNSPITHFSSKSPPSSKGNADLMIELVRMXXAVDKFVGSLYVQAILXT
IYVRDFFTKDTQFPILMKPIVVKNNTFVNSSSRTLPYSNSEGVXDINKDYLSIVSSSPSP
VSSPSRDKRLEEETKQEDEKEKKLNVDKNLKCSLSSIEKVSCDKKSKDXXX


Frame C:
*ivvrlhlncnhqihqllislqnhhhhqkemqi**lnwlecxxqlinlldhymfkqyxrl
ymyvislqrihnfqy**nlsllktihl*ihlqelypivivkvxri*irtiyq*yhhhlhq
flhhqeindwkkklnkrmkkkrn*mliri*nah*vvlkkyhvikrvkmxxx
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U14142-1 (Contig-U14142-1Q)
/CSM_Contig/Contig-U14142-1Q.Seq.d
         (516 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U14142-1 (Contig-U14142-1Q) /CSM_Contig/Conti...   977  0.0
Contig-U13779-1 (Contig-U13779-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U11332-1 (Contig-U11332-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U13453-1 (Contig-U13453-1Q) /CSM_Contig/Conti...    36  0.036
Contig-U11749-1 (Contig-U11749-1Q) /CSM_Contig/Conti...    36  0.036
Contig-U09384-1 (Contig-U09384-1Q) /CSM_Contig/Conti...    36  0.036
Contig-U14805-1 (Contig-U14805-1Q) /CSM_Contig/Conti...    34  0.14
Contig-U13904-1 (Contig-U13904-1Q) /CSM_Contig/Conti...    34  0.14
Contig-U13892-1 (Contig-U13892-1Q) /CSM_Contig/Conti...    34  0.14
Contig-U13309-1 (Contig-U13309-1Q) /CSM_Contig/Conti...    30  2.2

>Contig-U14142-1 (Contig-U14142-1Q) /CSM_Contig/Contig-U14142-1Q.Seq.d
          Length = 516

 Score =  977 bits (493), Expect = 0.0
 Identities = 505/505 (100%)
 Strand = Plus / Plus

                                                                       
Query: 3   tgaatcgtggttcggttgcatttaaattgcaaccaccaaattcaccaattactcatttct 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3   tgaatcgtggttcggttgcatttaaattgcaaccaccaaattcaccaattactcatttct 62

                                                                       
Query: 63  cttcaaaatcaccaccatcatcaaaaggaaatgcagatttaatgattgaattggttagaa 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  cttcaaaatcaccaccatcatcaaaaggaaatgcagatttaatgattgaattggttagaa 122

                                                                       
Query: 123 tgtntgnggcagttgataaatttgttggatcattatatgttcaagcaatattanagacta 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 tgtntgnggcagttgataaatttgttggatcattatatgttcaagcaatattanagacta 182

                                                                       
Query: 183 tatatgtacgtgatttctttacaaaggatacacaatttccaatattaatgaaacctatcg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 tatatgtacgtgatttctttacaaaggatacacaatttccaatattaatgaaacctatcg 242

                                                                       
Query: 243 ttgttaaaaacaatacatttgtaaattcatcttcaagaactctaccctatagtaatagtg 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ttgttaaaaacaatacatttgtaaattcatcttcaagaactctaccctatagtaatagtg 302

                                                                       
Query: 303 aaggtgtanaggatataaataaggactatctatcaatagtatcatcatcaccttcaccag 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aaggtgtanaggatataaataaggactatctatcaatagtatcatcatcaccttcaccag 362

                                                                       
Query: 363 tttcttcaccatcaagagataaacgattggaagaagaaactaaacaagaggatgaaaaag 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tttcttcaccatcaagagataaacgattggaagaagaaactaaacaagaggatgaaaaag 422

                                                                       
Query: 423 aaaagaaattaaatgttgataagaatttaaaatgctcattaagtagtattgaaaaagtat 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 aaaagaaattaaatgttgataagaatttaaaatgctcattaagtagtattgaaaaagtat 482

                                    
Query: 483 catgtgataaaaagagtaaagatga 507
           |||||||||||||||||||||||||
Sbjct: 483 catgtgataaaaagagtaaagatga 507


>Contig-U13779-1 (Contig-U13779-1Q) /CSM_Contig/Contig-U13779-1Q.Seq.d
          Length = 146

 Score = 40.1 bits (20), Expect = 0.002
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 417 aaaaagaaaagaaattaaat 436
           ||||||||||||||||||||
Sbjct: 43  aaaaagaaaagaaattaaat 24


>Contig-U11332-1 (Contig-U11332-1Q) /CSM_Contig/Contig-U11332-1Q.Seq.d
          Length = 3658

 Score = 38.2 bits (19), Expect = 0.009
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 334  atcaatagtatcatcatca 352
            |||||||||||||||||||
Sbjct: 1414 atcaatagtatcatcatca 1432


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9554
Number of Sequences: 6905
Number of extensions: 9554
Number of successful extensions: 1344
Number of sequences better than 10.0: 480
length of query: 516
length of database: 5,674,871
effective HSP length: 16
effective length of query: 500
effective length of database: 5,564,391
effective search space: 2782195500
effective search space used: 2782195500
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.12.18
Homology vs DNA 
Query= Contig-U14142-1 (Contig-U14142-1Q) /CSM_Contig/Contig-U14142-1Q.Seq.d
         (516 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ338269) Dictyostelium discoideum cDNA clone:dda60p18, 5' ...   747   0.0    2
(AC229909) Oryza minuta clone OM__Ba0163A13, complete sequence.    50   0.079  1
(AC229757) Oryza minuta clone OM__Ba0172C02, complete sequence.    50   0.079  1
(AC213143) Oryza officinalis clone OO__Ba0066G24, *** SEQUEN...    50   0.079  1
(AC222094) Bos taurus clone CH240-371O18, WORKING DRAFT SEQU...    48   0.092  2
(CQ341000) Sequence 15094 from Patent WO0157275.                   32   0.10   3
(CQ303669) Sequence 14774 from Patent WO0186003.                   32   0.10   3
(CQ266718) Sequence 14979 from Patent WO0157277.                   32   0.10   3
(CQ228562) Sequence 15401 from Patent WO0157273.                   32   0.10   3
(CQ205183) Sequence 7460 from Patent WO0157271.                    32   0.10   3
(CQ180806) Sequence 12202 from Patent WO0157274.                   32   0.10   3
(CQ145368) Sequence 15390 from Patent WO0157276.                   32   0.10   3
(CQ106714) Sequence 15573 from Patent WO0157272.                   32   0.10   3
(CQ075733) Sequence 11533 from Patent WO0157278.                   32   0.10   3
(CQ056467) Sequence 7287 from Patent WO0157270.                    32   0.10   3
(AC167762) Bos taurus clone CH240-197D18, WORKING DRAFT SEQU...    48   0.31   1
(AC091278) Mus musculus chromosome 1, clone RP23-294D6, comp...    44   0.53   2
(CQ328278) Sequence 2372 from Patent WO0157275.                    32   0.68   3
(CQ291161) Sequence 2266 from Patent WO0186003.                    32   0.68   3
(CQ254150) Sequence 2411 from Patent WO0157277.                    32   0.68   3
(CQ215557) Sequence 2396 from Patent WO0157273.                    32   0.68   3
(CQ200076) Sequence 2353 from Patent WO0157271.                    32   0.68   3
(CQ170925) Sequence 2321 from Patent WO0157274.                    32   0.68   3
(CQ132360) Sequence 2382 from Patent WO0157276.                    32   0.68   3
(CQ093586) Sequence 2445 from Patent WO0157272.                    32   0.68   3
(CQ066540) Sequence 2340 from Patent WO0157278.                    32   0.68   3
(CQ051492) Sequence 2312 from Patent WO0157270.                    32   0.68   3
(DQ074464) Malus x domestica MYB13 mRNA, complete cds.             36   0.84   2
(FG410368) 020924KAAA009951HT (KAAA) A. deliciosa developing...    36   0.87   2
(FG409682) 020904KAAA009149HT (KAAA) A. deliciosa developing...    36   0.89   2
(FG411271) 020924KAAA011203HT (KAAA) A. deliciosa developing...    36   0.92   2
(AE014182) Mus musculus piebald deletion region section 10 o...    46   1.2    1
(AC154270) Mus musculus BAC clone RP24-259O16 from chromosom...    46   1.2    1
(AP003486) Homo sapiens genomic DNA, chromosome 11 clone:RP1...    46   1.2    1
(AP000824) Homo sapiens genomic DNA, chromosome 11 clone:RP1...    46   1.2    1
(CU695055) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.2    1
(AC091741) Homo sapiens chromosome 4 clone RP11-689E2, *** S...    46   1.2    1
(AP001890) Homo sapiens genomic DNA, chromosome 11q clone:RP...    46   1.2    1
(AQ355177) CITBI-E1-2535L8.TF CITBI-E1 Homo sapiens genomic ...    46   1.2    1
(AQ354482) CITBI-E1-2535L12.TF CITBI-E1 Homo sapiens genomic...    46   1.2    1
(ED017547) RAPD_LIB2_FWD_C10 EPR_Diffuse-flow_Vent_Virioplk_...    46   1.2    1
(CT355295) Sus scrofa genomic clone CH242-382B2, genomic sur...    46   1.2    1
(CN454056) B10_CK-L28_04 Flower bud cDNA library from Lycori...    46   1.2    1
(CN454055) G11_RE-CK-L31_13 Flower bud cDNA library from Lyc...    46   1.2    1
(AP001448) Homo sapiens genomic DNA, chromosome 18q22 clone:...    38   3.5    3
(AC006333) Homo sapiens BAC clone RP11-390E23 from 7, comple...    36   3.7    3
(AP009290) Solanum lycopersicum genomic DNA, chromosome 8, c...    42   4.0    2
(EX441049) GQ04101.B7_O17 GQ041 - Shoot tip - Dormant (Norma...    30   4.4    3
(AL844156) Mouse DNA sequence from clone RP23-274I9 on chrom...    44   4.5    2
(AC178289) Strongylocentrotus purpuratus clone R3-1114M24, W...    36   4.7    5
(EX370248) GQ03219.B7_A01 GQ032 - Shoot tip (Normalized libr...    30   4.7    3
(AC162789) Mus musculus chromosome 1, clone RP24-323I23, com...    44   4.9    1
(AC131673) Mus musculus BAC clone RP23-321P21 from 1, comple...    44   4.9    1
(AL359081) Human DNA sequence from clone RP11-541F9 on chrom...    44   4.9    1
(AK029708) Mus musculus adult male testis cDNA, RIKEN full-l...    44   4.9    1
(AQ824164) HS_3146_B2_E11_MR CIT Approved Human Genomic Sper...    44   4.9    1
(AQ611902) HS_5072_B1_G04_T7A RPCI-11 Human Male BAC Library...    44   4.9    1
(AQ514280) HS_5194_B2_C07_T7A RPCI-11 Human Male BAC Library...    44   4.9    1
(AQ481476) RPCI-11-241J7.TJ RPCI-11 Homo sapiens genomic clo...    44   4.9    1
(EI815450) POTEJ28TR Solanum tuberosum RHPOTKEY BAC ends Sol...    44   4.9    1
(FG798507) G1148P318FB3.T0 Anolis carolinensis pooled normal...    44   4.9    1
(EV480875) Fc_nor_65A12_M13F Folsomia candida normalized cDN...    44   4.9    1
(EV216802) 0191412 Brassica napus Leaf - drought Brassica na...    44   4.9    1
(AE006806) Sulfolobus solfataricus P2 section 165 of 272 of ...    44   4.9    1
(CF605451) RADIC01_001112 Grape Root pSPORT1 Library Vitis v...    40   4.9    2
(EX442599) GQ04106.B7_A11 GQ041 - Shoot tip - Dormant (Norma...    30   5.3    3
(C91275) Dictyostelium discoideum slug cDNA, clone SSJ737.         34   5.4    2
(EE092797) S7B04195 Berries 14mm with GA3 (VvS7) Vitis vinif...    40   5.8    2
(EE091440) S7B01017 Berries 14mm with GA3 (VvS7) Vitis vinif...    40   5.8    2
(FD734263) WS03932.C21_O09 SS-B-24 Picea sitchensis cDNA clo...    30   6.0    3
(DV223276) VVI218B08_618214 CabSau Flower Stage 12 (FLOu0012...    40   6.4    2
(AC176536) Strongylocentrotus purpuratus clone R3-3075L16, W...    34   6.6    4
(AC149492) Medicago truncatula clone mth2-99d10, complete se...    34   6.8    5
(CO488206) GQ0259.B7_C21 GQ025: Annual flush SHOOTS diurnal ...    30   6.8    3
(EC973956) WIN1017.C21_F11 Muscat Hamburg post-veraison peri...    40   7.0    2
(CO489460) GQ0259.B3_C21 GQ025: Annual flush SHOOTS diurnal ...    30   7.1    3
(AC167496) Bos taurus clone CH240-127P7, WORKING DRAFT SEQUE...    36   7.8    5
(AZ529884) ENTCA39TF Entamoeba histolytica Sheared DNA Entam...    38   8.0    2
(AZ530736) ENTDJ10TF Entamoeba histolytica Sheared DNA Entam...    38   8.4    2
(AZ528265) ENTBP78TR Entamoeba histolytica Sheared DNA Entam...    38   8.4    2
(BH137304) ENTNX52TF Entamoeba histolytica Sheared DNA Entam...    38   8.4    2
(AZ544560) ENTDD81TR Entamoeba histolytica Sheared DNA Entam...    38   8.5    2
(AZ667573) ENTKF93TF Entamoeba histolytica Sheared DNA Entam...    38   8.6    2
(BH138927) ENTNX09TR Entamoeba histolytica Sheared DNA Entam...    38   8.6    2
(AZ670971) ENTJH01TR Entamoeba histolytica Sheared DNA Entam...    38   8.9    2
(AZ676879) ENTHN72TR Entamoeba histolytica Sheared DNA Entam...    38   9.0    2
(AP008240) Lotus japonicus genomic DNA, chromosome 4, clone:...    38   9.9    3

>(BJ338269) Dictyostelium discoideum cDNA clone:dda60p18, 5' end,
           single read.
          Length = 507

 Score =  747 bits (377), Expect(2) = 0.0
 Identities = 389/389 (100%)
 Strand = Plus / Plus


Query: 3   tgaatcgtggttcggttgcatttaaattgcaaccaccaaattcaccaattactcatttct 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3   tgaatcgtggttcggttgcatttaaattgcaaccaccaaattcaccaattactcatttct 62


Query: 63  cttcaaaatcaccaccatcatcaaaaggaaatgcagatttaatgattgaattggttagaa 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  cttcaaaatcaccaccatcatcaaaaggaaatgcagatttaatgattgaattggttagaa 122


Query: 123 tgtntgnggcagttgataaatttgttggatcattatatgttcaagcaatattanagacta 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 tgtntgnggcagttgataaatttgttggatcattatatgttcaagcaatattanagacta 182


Query: 183 tatatgtacgtgatttctttacaaaggatacacaatttccaatattaatgaaacctatcg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 tatatgtacgtgatttctttacaaaggatacacaatttccaatattaatgaaacctatcg 242


Query: 243 ttgttaaaaacaatacatttgtaaattcatcttcaagaactctaccctatagtaatagtg 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ttgttaaaaacaatacatttgtaaattcatcttcaagaactctaccctatagtaatagtg 302


Query: 303 aaggtgtanaggatataaataaggactatctatcaatagtatcatcatcaccttcaccag 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aaggtgtanaggatataaataaggactatctatcaatagtatcatcatcaccttcaccag 362


Query: 363 tttcttcaccatcaagagataaacgattg 391
           |||||||||||||||||||||||||||||
Sbjct: 363 tttcttcaccatcaagagataaacgattg 391

 Score =  103 bits (52), Expect(2) = 0.0
 Identities = 52/52 (100%)
 Strand = Plus / Plus


Query: 456 gctcattaagtagtattgaaaaagtatcatgtgataaaaagagtaaagatga 507
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gctcattaagtagtattgaaaaagtatcatgtgataaaaagagtaaagatga 507

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 510,662,892
Number of extensions: 30943027
Number of successful extensions: 2457601
Number of sequences better than 10.0: 87
Length of query: 516
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 493
Effective length of database: 93,106,754,628
Effective search space: 45901630031604
Effective search space used: 45901630031604
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7.10
Homology vs Protein 
Query= Contig-U14142-1 (Contig-U14142-1Q) /CSM_Contig/Contig-U14142-1Q.Seq.d
         (516 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54KX3) RecName: Full=Putative vacuolar protein sorting-associa...   231   1e-59
CP000716_919(CP000716|pid:none) Thermosipho melanesiensis BI429,...    33   4.2
CP000077_166(CP000077|pid:none) Sulfolobus acidocaldarius DSM 63...    32   9.2

>(Q54KX3) RecName: Full=Putative vacuolar protein sorting-associated
            protein 13F;
          Length = 4246

 Score =  231 bits (588), Expect = 1e-59
 Identities = 122/157 (77%), Positives = 123/157 (78%)
 Frame = +2

Query: 5    NRGSVAFKLQPPNSPITHFSSKSPPSSKGNADLMIELVRMXXAVDKFVGSLYVQAILXTI 184
            NRGSVAF+LQPPNSPITHFSSKSPPSSKGNADLMIELVRM  AVDKFVGSLYVQAIL TI
Sbjct: 802  NRGSVAFRLQPPNSPITHFSSKSPPSSKGNADLMIELVRMSVAVDKFVGSLYVQAILETI 861

Query: 185  YVRDFFTKDTQFPILMKPIVVKNNTFVNSSSRTLPYSNSEGVXDINKDYLXXXXXXXXXX 364
            YVRDFFTKDTQFPILMKPIVVKNNTFVNSSSRTLPYSNSEGV DINKDYL
Sbjct: 862  YVRDFFTKDTQFPILMKPIVVKNNTFVNSSSRTLPYSNSEGVEDINKDYLSIVSSSPSPV 921

Query: 365  XXXXRDXXXXXXXXXXXXXXXXLNVDKNLKCSLSSIE 475
                RD                LNVDKNLKCSLSSIE
Sbjct: 922  SSPSRDKRLEEETKQEDEKEKKLNVDKNLKCSLSSIE 958

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 588,293,294
Number of extensions: 9455948
Number of successful extensions: 21591
Number of sequences better than 10.0: 3
Number of HSP's gapped: 21450
Number of HSP's successfully gapped: 3
Length of query: 172
Length of database: 1,051,180,864
Length adjustment: 119
Effective length of query: 53
Effective length of database: 666,030,343
Effective search space: 35299608179
Effective search space used: 35299608179
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.82  gvh: 0.49  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.38  mip: 0.02
 nuc: 0.11  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: mitochondrial
	 28.0 %: nuclear
	 20.0 %: cytoplasmic
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U14142-1 is mit
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0