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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U02486-1
Contig ID Contig-U02486-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U02486-1 (Contig-U02486-1Q) /CSM_Contig/Contig-U02486-1Q.Seq.d
ACATCTCATAGAAATTTAATTAGATTAGCATTATTGGATTTAGGGTATAT
TACTAAAGAGGAAACCATCGATTCAATTCAAGAGGTGTTGAGAGAGATTG
ATCTTCCATCTGACTCACCAAAAGATTGGTTCAAATCAACTTCAAAACAA
GGTGTGCTTTGGTTAAATTCAGTCTCTTTGACATCGATTGAGGGTGATGA
TGATTATCAGAGTGATAACTTCAAAAAACATGAAAAATATTGGAAACCAG
TCATAGAGGAAATCATTAGATCTATCTTTAATTCAAAGATTGAGGATGAT
TCACCATCTGGTGTTGTCTTTGTGTTACTTGGTAAACAAAGTACTCATTT
CAAACAAACCGTTCAATTAATTCATTCAGAATATATGGGTGCTATTCCAA
TTGAATTCATTGAAGCTGCTTCACCAGTTTTAGAAACTTTCCTTAGTTCA
AATTGTTTTAAAAAAATTAATAATTCTTTAGAGAAATTATCATTATCTCC
AATTGATTGGTGGAAACCAAAAGAAGATGATGATGAAGAAGAAGATGAAG
AGGAAGAAGAAGAGGTAGATGAGGAACAAGAAAAACAACAACAACAAAAT
GTAGAAATA
Gap no gap
Contig length 609
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 845053
End point 845662
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 2
Link to clone list U02486
List of clone(s) 

est1=VSB285Z,1,610
est2=AFC473Z,20,525
Translated Amino Acid sequence 
TSHRNLIRLALLDLGYITKEETIDSIQEVLREIDLPSDSPKDWFKSTSKQGVLWLNSVSL
TSIEGDDDYQSDNFKKHEKYWKPVIEEIIRSIFNSKIEDDSPSGVVFVLLGKQSTHFKQT
VQLIHSEYMGAIPIEFIEAASPVLETFLSSNCFKKINNSLEKLSLSPIDWWKPKEDDDEE
EDEEEEEEVDEEQEKQQQQNVEI
Translated Amino Acid sequence (All Frames) 
Frame A:
TSHRNLIRLALLDLGYITKEETIDSIQEVLREIDLPSDSPKDWFKSTSKQGVLWLNSVSL
TSIEGDDDYQSDNFKKHEKYWKPVIEEIIRSIFNSKIEDDSPSGVVFVLLGKQSTHFKQT
VQLIHSEYMGAIPIEFIEAASPVLETFLSSNCFKKINNSLEKLSLSPIDWWKPKEDDDEE
EDEEEEEEVDEEQEKQQQQNVEI


Frame B:
hliei*ld*hywi*gillkrkpsiqfkrc*erlifhlthqkigsnqlqnkvcfg*iqsl*
hrlrvmmiirvitsknmknignqs*rksldlsliqrlrmihhlvlslcylvnkvlisnkp
fn*fiqniwvlfqlnslkllhqf*klslvqivlkkliil*rnyhylqliggnqkkmmmkk
kmkrkkkr*mrnkknnnnkm*k


Frame C:
is*kfn*isiigfrvyy*rgnhrfnsrgverd*ssi*ltkrlvqinfktrcalvkfslfd
id*g***lse**lqkt*kiletshrgnh*iyl*fkd*g*ftiwcclcvtw*tkysfqtnr
sinsfriygcysn*ih*scftsfrnfp*fklf*kn**ffreiiiisn*lvetkrr***rr
r*rgrrrgr*gtrkttttkcrn
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U02486-1 (Contig-U02486-1Q)
/CSM_Contig/Contig-U02486-1Q.Seq.d
         (609 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U02486-1 (Contig-U02486-1Q) /CSM_Contig/Conti...   987  0.0
Contig-U11729-1 (Contig-U11729-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U14897-1 (Contig-U14897-1Q) /CSM_Contig/Conti...    36  0.043
Contig-U13366-1 (Contig-U13366-1Q) /CSM_Contig/Conti...    36  0.043
Contig-U12411-1 (Contig-U12411-1Q) /CSM_Contig/Conti...    36  0.043
Contig-U12084-1 (Contig-U12084-1Q) /CSM_Contig/Conti...    36  0.043
Contig-U11904-1 (Contig-U11904-1Q) /CSM_Contig/Conti...    36  0.043
Contig-U11677-1 (Contig-U11677-1Q) /CSM_Contig/Conti...    36  0.043
Contig-U11451-1 (Contig-U11451-1Q) /CSM_Contig/Conti...    36  0.043
Contig-U11241-1 (Contig-U11241-1Q) /CSM_Contig/Conti...    36  0.043

>Contig-U02486-1 (Contig-U02486-1Q) /CSM_Contig/Contig-U02486-1Q.Seq.d
          Length = 609

 Score =  987 bits (498), Expect = 0.0
 Identities = 512/519 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatctcatagaaatttaattagattagcattattggatttagggtatattactaaagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   acatctcatagaaatttaattagattagcattattggatttagggtatattactaaagag 60

                                                                       
Query: 61  gaaaccatcgattcaattcaagaggtgttgagagagattgatcttccatctgactcacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gaaaccatcgattcaattcaagaggtgttgagagagattgatcttccatctgactcacca 120

                                                                       
Query: 121 aaagattggttcaaatcaacttcaaaacaaggtgtgctttggttaaattcagtctctttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaagattggttcaaatcaacttcaaaacaaggtgtgctttggttaaattcagtctctttg 180

                                                                       
Query: 181 acatcgattgagggtgatgatgattatcagagtgataacttcaaaaaacatgaaaaatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 acatcgattgagggtgatgatgattatcagagtgataacttcaaaaaacatgaaaaatat 240

                                                                       
Query: 241 tggaaaccagtcatagaggaaatcattagatctatctttaattcaaagattgaggatgat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tggaaaccagtcatagaggaaatcattagatctatctttaattcaaagattgaggatgat 300

                                                                       
Query: 301 tcaccatctggtgttgtctttgtgttacttggtaaacaaagtactcatttcaaacaaacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcaccatctggtgttgtctttgtgttacttggtaaacaaagtactcatttcaaacaaacc 360

                                                                       
Query: 361 gttcaattaattcattcagaatatatgggtgctattccaattgaattcattgaagctgct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gttcaattaattcattcagaatatatgggtgctattccaattgaattcattgaagctgct 420

                                                                       
Query: 421 tcaccagttttagaaactttccttagttcaaattgttttnnnnnnnttaataattcttta 480
           |||||||||||||||||||||||||||||||||||||||       ||||||||||||||
Sbjct: 421 tcaccagttttagaaactttccttagttcaaattgttttaaaaaaattaataattcttta 480

                                                  
Query: 481 gagaaattatcattatctccaattgattggtggaaacca 519
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gagaaattatcattatctccaattgattggtggaaacca 519


 Score = 54.0 bits (27), Expect = 2e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 583 aaacaacaacaacaaaatgtagaaata 609
           |||||||||||||||||||||||||||
Sbjct: 583 aaacaacaacaacaaaatgtagaaata 609


>Contig-U11729-1 (Contig-U11729-1Q) /CSM_Contig/Contig-U11729-1Q.Seq.d
          Length = 862

 Score = 38.2 bits (19), Expect = 0.011
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 583 aaacaacaacaacaaaatg 601
           |||||||||||||||||||
Sbjct: 277 aaacaacaacaacaaaatg 295


 Score = 34.2 bits (17), Expect = 0.17
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 584 aacaacaacaacaaaat 600
           |||||||||||||||||
Sbjct: 677 aacaacaacaacaaaat 693


>Contig-U14897-1 (Contig-U14897-1Q) /CSM_Contig/Contig-U14897-1Q.Seq.d
          Length = 733

 Score = 36.2 bits (18), Expect = 0.043
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 120 aaaagattggttcaaatc 137
           ||||||||||||||||||
Sbjct: 437 aaaagattggttcaaatc 454


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,522
Number of Sequences: 6905
Number of extensions: 15522
Number of successful extensions: 5485
Number of sequences better than 10.0: 460
length of query: 609
length of database: 5,674,871
effective HSP length: 16
effective length of query: 593
effective length of database: 5,564,391
effective search space: 3299683863
effective search space used: 3299683863
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 5.17
Homology vs DNA 
Query= Contig-U02486-1 (Contig-U02486-1Q) /CSM_Contig/Contig-U02486-1Q.Seq.d
         (609 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU261931) Dictyostelium discoideum vegetative cDNA clone:VS...   910   0.0    2
(BJ341226) Dictyostelium discoideum cDNA clone:dda5b20, 3' e...   833   0.0    2
(EI875015) CAH1-42H16TR CAA1Ba Cicer arietinum genomic clone...    32   1.1    3
(AC156259) Oryctolagus cuniculus clone LB1-241M12, WORKING D...    46   1.6    1
(AC154155) Oryctolagus cuniculus clone LB1-120P5, WORKING DR...    46   1.6    1
(AC151116) Bos taurus clone CH240-85K12, WORKING DRAFT SEQUE...    46   1.6    1
(AC147855) Oryctolagus cuniculus clone LB1-269P24, WORKING D...    46   1.6    1
(AC182342) Oryctolagus cuniculus clone LB1-74E20, WORKING DR...    46   1.6    1
(AC175620) Oryctolagus cuniculus clone LB1-229O1, WORKING DR...    46   1.6    1
(AC167513) Oryctolagus cuniculus clone LB1-237L10, WORKING D...    46   1.6    1
(AC165202) Oryctolagus cuniculus clone LB1-75F11, WORKING DR...    46   1.6    1
(BY575967) Mus musculus thymus lymphocyte cDNA, RIKEN full-l...    46   1.6    1
(FE031030) C0009477E20.Q1KAM13R KN511 Ovis aries peyer's pat...    46   1.6    1
(AC146590) Medicago truncatula chromosome 8 clone mth2-145p1...    44   1.6    2
(U41996) Caenorhabditis elegans cosmid F38E1, complete seque...    42   1.7    2
(AM470497) Vitis vinifera contig VV79X001850.3, whole genome...    40   1.9    3
(AC009184) Drosophila melanogaster strain y chromosome X clo...    44   2.3    3
(DC898509) Citrus unshiu mRNA, clone: STG0806, 5'-end sequen...    42   2.6    2
(AC111266) Rattus norvegicus clone CH230-40N1, WORKING DRAFT...    36   2.8    3
(CT751327) Paramecium tetraurelia 5-PRIME EST from clone LK0...    36   3.0    2
(EK021633) 1092955333985 Global-Ocean-Sampling_GS-31-01-01-1...    38   3.3    2
(AC174118) Strongylocentrotus purpuratus clone R3-36N2, WORK...    42   4.4    3
(AC204735) Gallus gallus BAC clone CH261-12M21 from chromoso...    44   6.2    1
(AC198529) Gallus gallus BAC clone CH261-37L10 from chromoso...    44   6.2    1
(AC187767) Gallus gallus BAC clone CH261-163N4 from chromoso...    44   6.2    1
(AC151350) Xenopus (Silurana) tropicalis clone ISB-400N1, co...    44   6.2    1
(AE014298) Drosophila melanogaster chromosome X, complete se...    44   6.2    1
(AC104625) Drosophila melanogaster X BAC RP98-48G8 (Roswell ...    44   6.2    1
(AC023681) Drosophila melanogaster X BAC RP98-39P3 (Roswell ...    44   6.2    1
(AC157716) Xenopus (Silurana) tropicalis clone ISB1-268B3, W...    44   6.2    1
(AC157637) Dasypus novemcinctus clone VMRC5-243J21, WORKING ...    44   6.2    1
(AC157436) Oryctolagus cuniculus clone LB1-208G20, WORKING D...    44   6.2    1
(AC156359) Oryctolagus cuniculus clone LB1-51L6, WORKING DRA...    44   6.2    1
(AC126914) Rattus norvegicus clone CH230-483H8, *** SEQUENCI...    44   6.2    1
(AC120757) Rattus norvegicus clone CH230-106E17, *** SEQUENC...    44   6.2    1
(AC118580) Oryctolagus cuniculus clone LB1-82E16, WORKING DR...    44   6.2    1
(AC117303) Rattus norvegicus clone CH230-159J18, *** SEQUENC...    44   6.2    1
(AC108608) Rattus norvegicus clone CH230-272J5, *** SEQUENCI...    44   6.2    1
(AC097159) Rattus norvegicus clone CH230-136P20, *** SEQUENC...    44   6.2    1
(AC224364) Bos taurus clone CH240-486K24, WORKING DRAFT SEQU...    44   6.2    1
(AC215596) Oryctolagus cuniculus clone LB1-98O15, WORKING DR...    44   6.2    1
(AC182527) Oryctolagus cuniculus clone LB1-147A21, WORKING D...    44   6.2    1
(AC175621) Oryctolagus cuniculus clone LB1-250L16, WORKING D...    44   6.2    1
(AC166882) Oryctolagus cuniculus clone LB1-5E23, WORKING DRA...    44   6.2    1
(AC166871) Oryctolagus cuniculus clone LB1-207H19, WORKING D...    44   6.2    1
(AC020500) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    44   6.2    1
(FI362514) CH321-65L18.x CHORI-321 Drosophila melanogaster g...    44   6.2    1
(ER955619) CH260-105D23_T7 CHORI-260 Meleagris gallopavo gen...    44   6.2    1
(ED549643) WCBE171TR WCBAC Trifolium repens genomic clone 27...    44   6.2    1
(DV968811) GC06818 Gracilaria changii cDNA library Gracilari...    44   6.2    1
(GH598934) G1297P537RA18.T0 C. parvum KSU-1 normalized sporo...    44   6.2    1
(FC803316) CBGC5693.fwd CBGC Lottia gigantea 15h 18h embryos...    44   6.2    1
(FC791054) CBGC2074.rev CBGC Lottia gigantea 15h 18h embryos...    44   6.2    1

>(AU261931) Dictyostelium discoideum vegetative cDNA clone:VSB285,
           3' end single read.
          Length = 610

 Score =  910 bits (459), Expect(2) = 0.0
 Identities = 459/459 (100%)
 Strand = Plus / Plus


Query: 1   acatctcatagaaatttaattagattagcattattggatttagggtatattactaaagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   acatctcatagaaatttaattagattagcattattggatttagggtatattactaaagag 60


Query: 61  gaaaccatcgattcaattcaagaggtgttgagagagattgatcttccatctgactcacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gaaaccatcgattcaattcaagaggtgttgagagagattgatcttccatctgactcacca 120


Query: 121 aaagattggttcaaatcaacttcaaaacaaggtgtgctttggttaaattcagtctctttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaagattggttcaaatcaacttcaaaacaaggtgtgctttggttaaattcagtctctttg 180


Query: 181 acatcgattgagggtgatgatgattatcagagtgataacttcaaaaaacatgaaaaatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 acatcgattgagggtgatgatgattatcagagtgataacttcaaaaaacatgaaaaatat 240


Query: 241 tggaaaccagtcatagaggaaatcattagatctatctttaattcaaagattgaggatgat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tggaaaccagtcatagaggaaatcattagatctatctttaattcaaagattgaggatgat 300


Query: 301 tcaccatctggtgttgtctttgtgttacttggtaaacaaagtactcatttcaaacaaacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcaccatctggtgttgtctttgtgttacttggtaaacaaagtactcatttcaaacaaacc 360


Query: 361 gttcaattaattcattcagaatatatgggtgctattccaattgaattcattgaagctgct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gttcaattaattcattcagaatatatgggtgctattccaattgaattcattgaagctgct 420


Query: 421 tcaccagttttagaaactttccttagttcaaattgtttt 459
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcaccagttttagaaactttccttagttcaaattgtttt 459

 Score =  107 bits (54), Expect(2) = 0.0
 Identities = 54/54 (100%)
 Strand = Plus / Plus


Query: 467 ttaataattctttagagaaattatcattatctccaattgattggtggaaaccaa 520
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ttaataattctttagagaaattatcattatctccaattgattggtggaaaccaa 520

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 668,027,330
Number of extensions: 37389149
Number of successful extensions: 2988516
Number of sequences better than 10.0: 53
Length of query: 609
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 586
Effective length of database: 99,442,330,388
Effective search space: 58273205607368
Effective search space used: 58273205607368
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.19
Homology vs Protein 
Query= Contig-U02486-1 (Contig-U02486-1Q) /CSM_Contig/Contig-U02486-1Q.Seq.d
         (609 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU559167_58(EU559167|pid:none) Candidatus Nitrospira defluvii Co...    48   2e-04
CP000359_2044(CP000359|pid:none) Deinococcus geothermalis DSM 11...    47   4e-04
(Q03W63) RecName: Full=Uracil-DNA glycosylase;          Short=UD...    45   0.001
(A2RHW2) RecName: Full=Uracil-DNA glycosylase;          Short=UD...    44   0.005
(B6J089) RecName: Full=Uracil-DNA glycosylase;          Short=UD...    42   0.010
AJ276518_1(AJ276518|pid:none) Leuconostoc mesenteroides partial ...    42   0.010
(Q5HX80) RecName: Full=Uracil-DNA glycosylase;          Short=UD...    41   0.023
(A8FJP1) RecName: Full=Uracil-DNA glycosylase;          Short=UD...    41   0.023
(Q83CW4) RecName: Full=Uracil-DNA glycosylase;          Short=UD...    41   0.023
EU968215_1(EU968215|pid:none) Zea mays clone 316686 uracil-DNA g...    41   0.023
CP000233_1137(CP000233|pid:none) Lactobacillus salivarius UCC118...    41   0.030
AY052541_1(AY052541|pid:none) Babesia bovis strain R1A merozoite...    40   0.052
AP008937_373(AP008937|pid:none) Lactobacillus fermentum IFO 3956...    40   0.052
AP008957_2420(AP008957|pid:none) Rhodococcus erythropolis PR4 DN...    40   0.052
(A7ZA24) RecName: Full=Uracil-DNA glycosylase;          Short=UD...    39   0.089
DQ173961_1(DQ173961|pid:none) Babesia bovis strain T2Bo merozoit...    39   0.089
(Q9RWH9) RecName: Full=Uracil-DNA glycosylase;          Short=UD...    39   0.089
(Q821F7) RecName: Full=Uracil-DNA glycosylase;          Short=UD...    39   0.15
FJ422804_1(FJ422804|pid:none) Babesia bovis isolate M1A merozoit...    39   0.15
FJ422803_1(FJ422803|pid:none) Babesia bovis isolate Tabasco mero...    39   0.15
CP000721_1867(CP000721|pid:none) Clostridium beijerinckii NCIMB ...    38   0.20
(Q8DTV8) RecName: Full=Uracil-DNA glycosylase;          Short=UD...    38   0.20
(Q03GV8) RecName: Full=Uracil-DNA glycosylase;          Short=UD...    38   0.20
AF147806_20(AF147806|pid:none) Gallid herpesvirus 2, complete ge...    37   0.34
(P39615) RecName: Full=Uracil-DNA glycosylase;          Short=UD...    36   0.75
CP001129_1114(CP001129|pid:none) Streptococcus equi subsp. zooep...    36   0.75
AE015450_609(AE015450|pid:none) Mycoplasma gallisepticum strain ...    36   0.98
CP001389_2922(CP001389|pid:none) Rhizobium sp. NGR234, complete ...    36   0.98
DQ173960_1(DQ173960|pid:none) Babesia bovis strain T2Bo merozoit...    36   0.98
AY751297_1(AY751297|pid:none) Euonymus alatus 1,2-diacyl-sn-glyc...    36   0.98
AY271823_1(AY271823|pid:none) Branchiostoma belcheri tsingtaunes...    35   1.3
CR628336_1669(CR628336|pid:none) Legionella pneumophila str. Par...    35   1.3
CR628337_1669(CR628337|pid:none) Legionella pneumophila str. Len...    35   1.3
CP000413_1243(CP000413|pid:none) Lactobacillus gasseri ATCC 3332...    35   1.7
BX908798_2012(BX908798|pid:none) Parachlamydia-related symbiont ...    35   1.7
L34064_1(L34064|pid:none) Gallid herpesvirus 1 uracil-DNA glycos...    35   1.7
(Q7N1U8) RecName: Full=Uracil-DNA glycosylase;          Short=UD...    35   1.7
FM204883_1272(FM204883|pid:none) Streptococcus equi subsp. equi ...    35   1.7
(B0RWT2) RecName: Full=Uracil-DNA glycosylase;          Short=UD...    35   1.7
EU497915_6(EU497915|pid:none) Campylobacter coli cytochrome d ub...    35   2.2
AY052538_3(AY052538|pid:none) Babesia bovis strain Mo7 merozoite...    35   2.2
CP001600_2951(CP001600|pid:none) Edwardsiella ictaluri 93-146, c...    35   2.2
A48443(A48443;S27781) merozoite 44K variable surface antigen MSA...    35   2.2
CP000422_1286(CP000422|pid:none) Pediococcus pentosaceus ATCC 25...    34   2.9
FJ422809_1(FJ422809|pid:none) Babesia bovis isolate Veracruz mer...    34   2.9
AE017226_2541(AE017226|pid:none) Treponema denticola ATCC 35405,...    34   2.9
FM864216_181(FM864216|pid:none) Mycoplasma conjunctivae HRC/581T...    34   2.9
AY052538_4(AY052538|pid:none) Babesia bovis strain Mo7 merozoite...    34   2.9
(B1J4J3) RecName: Full=Uracil-DNA glycosylase;          Short=UD...    34   2.9
CP001191_2956(CP001191|pid:none) Rhizobium leguminosarum bv. tri...    34   3.7
I36145(I36145)uracil-DNA glycosylase (EC 3.2.2.-) - Pseudomonas ...    34   3.7
(P29950) RecName: Full=Uracil-DNA glycosylase;          Short=UD...    34   3.7
(Q88YG1) RecName: Full=Uracil-DNA glycosylase;          Short=UD...    33   4.9
CP000496_728(CP000496|pid:none) Pichia stipitis CBS 6054 chromos...    33   4.9
CP000013_613(CP000013|pid:none) Borrelia garinii PBi, complete g...    33   4.9
CR378664_194(CR378664|pid:none) Photobacterium profundum SS9; se...    33   4.9
(Q5WAZ9) RecName: Full=Uracil-DNA glycosylase;          Short=UD...    33   4.9
(A7GVE5) RecName: Full=Uracil-DNA glycosylase;          Short=UD...    33   6.4
AM295250_231(AM295250|pid:none) Staphylococcus carnosus subsp. c...    33   6.4
(Q3BNI2) RecName: Full=Uracil-DNA glycosylase;          Short=UD...    33   6.4
(A7N9V7) RecName: Full=Chaperone protein htpG; AltName: Full=Hea...    33   6.4
AM263198_126(AM263198|pid:none) Listeria welshimeri serovar 6b s...    33   8.2
FM992688_217(FM992688|pid:none) Candida dubliniensis CD36 chromo...    33   8.3
(Q256I7) RecName: Full=Uracil-DNA glycosylase;          Short=UD...    33   8.3
AM295250_1544(AM295250|pid:none) Staphylococcus carnosus subsp. ...    33   8.3
(A4IZQ6) RecName: Full=Chaperone protein htpG; AltName: Full=Hea...    33   8.3
AY052540_1(AY052540|pid:none) Babesia bovis strain R1A merozoite...    33   8.3
AF030694_2(AF030694|pid:none) Plasmodium falciparum strain Dd2 h...    33   8.3
BX897700_730(BX897700|pid:none) Bartonella quintana str. Toulous...    33   8.3
AL844506_88(AL844506|pid:none) Plasmodium falciparum 3D7 chromos...    33   8.3
CP000915_238(CP000915|pid:none) Francisella tularensis subsp. me...    33   8.3

>EU559167_58(EU559167|pid:none) Candidatus Nitrospira defluvii
           Contig5882, partial sequence.
          Length = 226

 Score = 47.8 bits (112), Expect = 2e-04
 Identities = 36/126 (28%), Positives = 61/126 (48%)
 Frame = +1

Query: 142 SKQGVLWLNSVSLTSIEGDDDYQSDNFKKHEKYWKPVIEEIIRSIFNSKIEDDSPSGVVF 321
           ++QGVL LNSV        + ++        + W+ V + II ++ N+K     PS VVF
Sbjct: 117 ARQGVLMLNSVLTVRAHAANSHRG-------RGWEAVTDRII-AVLNAK-----PSRVVF 163

Query: 322 VLLGKQSTHFKQTVQLIHSEYMGAIPIEFIEAASPVLETFLSSNCFKKINNSLEKLSLSP 501
           VL G ++   K+   +  +++   + I     +      F  S CF ++N +L + +L P
Sbjct: 164 VLWGVEAK--KKQALITAAQH---VVISCAHPSPLSARKFFGSRCFSQVNRALTEANLKP 218

Query: 502 IDWWKP 519
           IDW  P
Sbjct: 219 IDWQIP 224

Lambda     K      H
   0.315    0.133    0.393

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 818,410,881
Number of extensions: 14680544
Number of successful extensions: 42781
Number of sequences better than 10.0: 71
Number of HSP's gapped: 42762
Number of HSP's successfully gapped: 71
Length of query: 203
Length of database: 1,051,180,864
Length adjustment: 122
Effective length of query: 81
Effective length of database: 656,320,666
Effective search space: 53161973946
Effective search space used: 53161973946
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.79  gvh: 0.40  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.38  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 28.0 %: nuclear
	 24.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for Contig-U02486-1 is cyt
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0