NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U14123-1
Contig ID Contig-U14123-1
Contig update 2002.12.18
Contig sequence 
>Contig-U14123-1 (Contig-U14123-1Q) /CSM_Contig/Contig-U14123-1Q.Seq.d
NNNNNNNNNNAANNCCAATNCCAATNCCAATACCAATACCAATACCAATA
CCAATACCAATACCAATACCAATACCAATACCAATACCAATATCAATATC
AATATCAATAATAATAAAGTTATTGATTGTGGTATTTCAAATTTAAGAAT
TGTTAAAAAATTAATTGAAAATGGATTTACATTTTCCAAGAAATCATTTA
ATAATTGTTTTGAAAATGTTAAAGTTTTAGAATATATTCATAATCATTTC
CCAAAACAAGAATGTACAACTGAAGCAATTGATTTAGCAAGTCGTCATGA
TTGTTATAATTCTGTTAAATTCTTATTGGATAATAGAAATGAAGGTTATG
ATATGGCAATTCAATTTTGTTTAACAAGAGGTTGGTTTGAAATTATTGAA
TTATTAAGATCAACTCAAAGATATAAAGATTTACATAATCCGTGTATCCC
TCAAAAACAACCTCTTTATTTTAATCAAATCGATCAAATCATTTCAATCA
ATTCTTCAATGATGTTATCAATTGTAATTAAAGAAAATGGTGATATAAAA
TTACCAATAACAGGTCAACAAATTACAAATGCAATTAAAAAGTCTGGTCA
TCTTATCAATTTTCCATCAA
Gap no gap
Contig length 620
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 4850476
End point 4849866
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U14123
List of clone(s) 

est1=AHM507Z,1,611
Translated Amino Acid sequence 
XXXXXNXNXNTNTNTNTNTNTNTNTNTNTNINININNNKVIDCGISNLRIVKKLIENGFT
FSKKSFNNCFENVKVLEYIHNHFPKQECTTEAIDLASRHDCYNSVKFLLDNRNEGYDMAI
QFCLTRGWFEIIELLRSTQRYKDLHNPCIPQKQPLYFNQIDQIISINSSMMLSIVIKENG
DIKLPITGQQITNAIKKSGHLINFPS
Translated Amino Acid sequence (All Frames) 
Frame A:
xxxxxqxqxqyqyqyqyqyqyqyqyqyqyqyqyqyq***sy*lwyfkfknc*kin*kwiy
ifqeii**lf*kc*sfriys*sfpktrmyn*sn*fskss*ll*fc*ilig**k*rl*ygn
silfnkrlv*ny*iikinski*rft*svypskttslf*snrsnhfnqffndvincn*rkw
*ykitnnrstnykcn*kvwssyqfsi


Frame B:
XXXXXNXNXNTNTNTNTNTNTNTNTNTNTNINININNNKVIDCGISNLRIVKKLIENGFT
FSKKSFNNCFENVKVLEYIHNHFPKQECTTEAIDLASRHDCYNSVKFLLDNRNEGYDMAI
QFCLTRGWFEIIELLRSTQRYKDLHNPCIPQKQPLYFNQIDQIISINSSMMLSIVIKENG
DIKLPITGQQITNAIKKSGHLINFPS


Frame C:
xxxxpxpxpipipipipipipipipipipisisisiiikllivvfqi*ellkn*lkmdlh
fprnhliivlkmlkf*nifiiisqnknvqlkqli*qvvmiviillnsywiiemkvmiwqf
nfv*qevglkllny*dqlkdikiyiirvslknnlfiliksiksfqsilq*cyql*lkkmv
i*nyq*qvnklqmqlkslvilsifhq
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U14123-1 (Contig-U14123-1Q)
/CSM_Contig/Contig-U14123-1Q.Seq.d
         (620 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U14123-1 (Contig-U14123-1Q) /CSM_Contig/Conti...   999  0.0
Contig-U09599-1 (Contig-U09599-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U09395-1 (Contig-U09395-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U03165-1 (Contig-U03165-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U10207-1 (Contig-U10207-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U14073-1 (Contig-U14073-1Q) /CSM_Contig/Conti...    36  0.043
Contig-U13896-1 (Contig-U13896-1Q) /CSM_Contig/Conti...    36  0.043
Contig-U13543-1 (Contig-U13543-1Q) /CSM_Contig/Conti...    36  0.043
Contig-U11442-1 (Contig-U11442-1Q) /CSM_Contig/Conti...    36  0.043
Contig-U11319-1 (Contig-U11319-1Q) /CSM_Contig/Conti...    36  0.043

>Contig-U14123-1 (Contig-U14123-1Q) /CSM_Contig/Contig-U14123-1Q.Seq.d
          Length = 620

 Score =  999 bits (504), Expect = 0.0
 Identities = 504/504 (100%)
 Strand = Plus / Plus

                                                                       
Query: 117 aagttattgattgtggtatttcaaatttaagaattgttaaaaaattaattgaaaatggat 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 aagttattgattgtggtatttcaaatttaagaattgttaaaaaattaattgaaaatggat 176

                                                                       
Query: 177 ttacattttccaagaaatcatttaataattgttttgaaaatgttaaagttttagaatata 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 ttacattttccaagaaatcatttaataattgttttgaaaatgttaaagttttagaatata 236

                                                                       
Query: 237 ttcataatcatttcccaaaacaagaatgtacaactgaagcaattgatttagcaagtcgtc 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 ttcataatcatttcccaaaacaagaatgtacaactgaagcaattgatttagcaagtcgtc 296

                                                                       
Query: 297 atgattgttataattctgttaaattcttattggataatagaaatgaaggttatgatatgg 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 atgattgttataattctgttaaattcttattggataatagaaatgaaggttatgatatgg 356

                                                                       
Query: 357 caattcaattttgtttaacaagaggttggtttgaaattattgaattattaagatcaactc 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 caattcaattttgtttaacaagaggttggtttgaaattattgaattattaagatcaactc 416

                                                                       
Query: 417 aaagatataaagatttacataatccgtgtatccctcaaaaacaacctctttattttaatc 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 aaagatataaagatttacataatccgtgtatccctcaaaaacaacctctttattttaatc 476

                                                                       
Query: 477 aaatcgatcaaatcatttcaatcaattcttcaatgatgttatcaattgtaattaaagaaa 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 aaatcgatcaaatcatttcaatcaattcttcaatgatgttatcaattgtaattaaagaaa 536

                                                                       
Query: 537 atggtgatataaaattaccaataacaggtcaacaaattacaaatgcaattaaaaagtctg 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 atggtgatataaaattaccaataacaggtcaacaaattacaaatgcaattaaaaagtctg 596

                                   
Query: 597 gtcatcttatcaattttccatcaa 620
           ||||||||||||||||||||||||
Sbjct: 597 gtcatcttatcaattttccatcaa 620


>Contig-U09599-1 (Contig-U09599-1Q) /CSM_Contig/Contig-U09599-1Q.Seq.d
          Length = 681

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 314 gttaaattcttattggataataga 337
           ||||||||||||||||| ||||||
Sbjct: 219 gttaaattcttattggagaataga 242


>Contig-U09395-1 (Contig-U09395-1Q) /CSM_Contig/Contig-U09395-1Q.Seq.d
          Length = 1124

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 253 aaaacaagaatgtacaactgaagcaatt 280
           ||||||| |||||||||||||| |||||
Sbjct: 946 aaaacaaaaatgtacaactgaaacaatt 973


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,320
Number of Sequences: 6905
Number of extensions: 12320
Number of successful extensions: 1496
Number of sequences better than 10.0: 221
length of query: 620
length of database: 5,674,871
effective HSP length: 16
effective length of query: 604
effective length of database: 5,564,391
effective search space: 3360892164
effective search space used: 3360892164
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.18
Homology vs DNA 
Query= Contig-U14123-1 (Contig-U14123-1Q) /CSM_Contig/Contig-U14123-1Q.Seq.d
         (620 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ355237) Dictyostelium discoideum cDNA clone:dda56m01, 3' ...   999   0.0    1
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    36   1e-04  13
(AC164412) Mus musculus chromosome 3, clone RP24-360M7, comp...    40   0.001  5
(AC177772) Strongylocentrotus purpuratus clone R3-1004M23, W...    44   0.006  4
(CU856204) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   0.033  5
(AC153146) Mus musculus BAC clone RP23-217F11 from chromosom...    50   0.095  1
(AC134559) Mus musculus BAC clone RP24-332C4 from chromosome...    50   0.095  1
(Z82069) Caenorhabditis elegans Cosmid W04A8.                      50   0.095  1
(AJ785632) Rhagades brandti partial mitochondrial 12S rRNA g...    50   0.095  1
(AJ785628) Adscita geryon partial mitochondrial 12S rRNA gen...    50   0.095  1
(AJ785622) Callizygaena splendens partial mitochondrial 12S ...    50   0.095  1
(AC074330) Mus musculus strain C57BL/6J chromosome 12 clone ...    50   0.095  1
(CU019541) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    50   0.095  1
(EI702766) SHII-E05 Flavobacterium columnare subtractive hyb...    50   0.095  1
(AC181179) Strongylocentrotus purpuratus clone R3-15B20, WOR...    44   0.13   3
(Z83218) Caenorhabditis elegans Cosmid C31A11.                     36   0.24   2
(AC163321) Bos taurus clone CH240-129O18, WORKING DRAFT SEQU...    36   0.27   6
(AJ785631) Jordanita hector partial mitochondrial 12S rRNA g...    48   0.38   1
(AJ785630) Adscita mauretanica partial mitochondrial 12S rRN...    48   0.38   1
(AJ785629) Adscita mannii partial mitochondrial 12S rRNA gen...    48   0.38   1
(AM052134) Dasytricha ruminantium EST, clone Dr07_C04.             48   0.38   1
(Z75712) Caenorhabditis elegans Cosmid K04G2.                      36   0.41   3
(AL132952) Caenorhabditis elegans YAC Y51H4A.                      40   0.42   6
(AM437113) Vitis vinifera, whole genome shotgun sequence, co...    40   0.45   2
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    34   0.46   14
(AL445565) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    38   0.46   7
(AM422018) Candidatus Phytoplasma australiense complete genome.    34   0.50   14
(AM285302) Spiroplasma citri GII3-3X chromosome, contig Cont...    38   0.52   5
(AC154694) Mus musculus BAC clone RP24-341A16 from 16, compl...    44   0.57   4
(CR628341) Zebrafish DNA sequence from clone DKEY-29G22 in l...    36   0.78   2
(CR388007) Zebrafish DNA sequence from clone DKEY-22G9 in li...    36   0.78   2
(EJ170837) 1092344082301 Global-Ocean-Sampling_GS-27-01-01-1...    44   0.79   2
(ER514305) 1093015484075 Global-Ocean-Sampling_GS-35-01-01-1...    32   0.94   3
(AM445933) Vitis vinifera contig VV78X216018.6, whole genome...    44   1.1    2
(AE017308) Mycoplasma mobile 163K complete genome.                 44   1.1    13
(AC004765) Homo sapiens 12 BAC RPCI11-388A16 (Roswell Park C...    36   1.2    6
(DB781401) Apis mellifera head cDNA, RIKEN full-length enric...    34   1.3    3
(AE017245) Mycoplasma synoviae 53, complete genome.                32   1.4    15
(AC116922) Dictyostelium discoideum chromosome 2 map 6061442...    38   1.4    4
(AC129023) Mus musculus BAC clone RP23-430E12 from chromosom...    46   1.5    1
(AM447726) Vitis vinifera contig VV78X086040.3, whole genome...    46   1.5    1
(Z78061) Caenorhabditis elegans Cosmid C48G7.                      46   1.5    1
(DQ263226) Bombyx mandarina 12S ribosomal RNA gene, partial ...    46   1.5    1
(AF038605) Caenorhabditis elegans cosmid C02B10, complete se...    46   1.5    1
(AC092675) Homo sapiens BAC clone RP11-629A22 from 2, comple...    46   1.5    1
(AP010084) Lotus japonicus genomic DNA, chromosome 3, clone:...    46   1.5    1
(AC221381) Bos taurus clone CH240-405H8, WORKING DRAFT SEQUE...    46   1.5    1
(AC195427) Echinops telfairi clone CH238-432L23, WORKING DRA...    46   1.5    1
(ER295478) 1092343643307 Global-Ocean-Sampling_GS-34-01-01-1...    46   1.5    1
(EK415360) 1095506320633 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.5    1
(EK032183) 1092956077208 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.5    1
(DX573430) Phaseolus-Bat-7_02_L09.F Phaseolus-Bat-7 Phaseolu...    46   1.5    1
(DE244787) Trifolium pratense DNA, clone:RC0116f.ab1.              46   1.5    1
(CE763660) tigr-gss-dog-17000370130246 Dog Library Canis lup...    46   1.5    1
(CC234904) CH261-50I23_RM1.1 CH261 Gallus gallus genomic clo...    46   1.5    1
(AL386047) Medicago truncatula EST MtBC32C05R1 : T7 end of c...    46   1.5    1
(BP189634) Dugesia japonica cDNA, clone: 06711_HH, expressed...    46   1.5    1
(AC177099) Strongylocentrotus purpuratus clone R3-4012L22, W...    36   1.6    5
(AC078804) Homo sapiens chromosome 3 clone RP11-489M17, WORK...    40   1.7    4
(AC078830) Staphylococcus aureus clone sabac-115, complete s...    36   1.8    3
(AJ010592) Guillardia theta DNA for complete sequence of nuc...    30   1.8    9
(AC004688) Plasmodium falciparum chromosome 12 clone 3D7, **...    36   2.0    6
(AM445987) Vitis vinifera contig VV78X078920.2, whole genome...    36   2.1    2
(CU856321) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   2.1    5
(AC211057) Solanum lycopersicum chromosome 6 clone C06HBa016...    34   2.2    6
(AC074320) Staphylococcus aureus clone sabac-41, complete se...    36   2.2    3
(AL031745) Plasmodium falciparum DNA from MAL1P2.                  32   2.3    9
(AM487368) Vitis vinifera contig VV78X074410.9, whole genome...    42   2.4    2
(EI482700) PV_GBa0095L19.r PV_GBa Phaseolus vulgaris genomic...    36   2.4    2
(AC118591) Mus musculus chromosome 3, clone RP24-93G19, comp...    44   2.5    5
(AC107482) Homo sapiens 3p BAC RP11-271J8 (Roswell Park Canc...    32   2.5    8
(AC186083) Cavia porcellus clone CH234-460E1, complete seque...    34   2.6    6
(AC196497) Pan troglodytes BAC clone CH251-473P22 from chrom...    44   2.7    4
(AC025592) Staphylococcus aureus clone sabac-43, complete se...    36   2.7    3
(AC078934) Staphylococcus aureus clone sabac-11, complete se...    36   2.7    3
(EI434489) PV_GBa0027K23.r PV_GBa Phaseolus vulgaris genomic...    36   2.8    2
(AC128880) Rattus norvegicus clone CH230-31N18, *** SEQUENCI...    32   2.8    2
(AC129661) Rattus norvegicus clone CH230-6D22, *** SEQUENCIN...    32   2.8    2
(AL929353) Plasmodium falciparum strain 3D7, chromosome 5, s...    36   2.9    8
(AC179283) Strongylocentrotus purpuratus clone R3-1105H23, W...    44   2.9    3
(AC214098) Populus trichocarpa clone POP027-N14, complete se...    32   2.9    2
(AP001667) Homo sapiens genomic DNA, chromosome 21q, section...    36   3.1    6
(ET883748) CHO_OF427xe13r1.ab1 CHO_OF Nicotiana tabacum geno...    34   3.1    2
(AC157473) Medicago truncatula chromosome 7 clone mte1-11e4,...    40   3.1    3
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    36   3.2    6
(EJ668309) 1092955049357 Global-Ocean-Sampling_GS-30-02-01-1...    40   3.4    2
(EJ203001) 1092344315056 Global-Ocean-Sampling_GS-27-01-01-1...    42   3.5    2
(CZ933947) 251366 Tomato EcoRI BAC Library Solanum lycopersi...    40   3.5    2
(AF144379) Apis mellifera glutamate transporter Am-EAAT (EAA...    34   3.6    2
(CR751566) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   3.7    6
(AX696302) Sequence 9 from Patent WO02057432.                      32   3.7    9
(AF165818) Guillardia theta nucleomorph chromosome 1, comple...    36   3.9    8
(Z93021) Human DNA sequence from clone RP3-516C23 on chromos...    34   3.9    5
(BI505396) BB170020A10A02.5 Bee Brain Normalized/Subtracted ...    34   3.9    2
(DB781505) Apis mellifera head cDNA, RIKEN full-length enric...    34   3.9    2
(AC145512) Medicago truncatula chromosome 6 clone mth2-19o18...    44   4.0    3
(AC117458) Homo sapiens 3 BAC RP11-345M4 (Roswell Park Cance...    38   4.6    2
(AC168773) Strongylocentrotus purpuratus clone R3-13N18, WOR...    44   4.9    4
(AC097459) Homo sapiens BAC clone RP11-13F20 from 4, complet...    34   4.9    6
(AL645696) Mouse DNA sequence from clone RP23-429E18 on chro...    36   5.0    4

>(BJ355237) Dictyostelium discoideum cDNA clone:dda56m01, 3' end,
           single read.
          Length = 611

 Score =  999 bits (504), Expect = 0.0
 Identities = 504/504 (100%)
 Strand = Plus / Minus


Query: 117 aagttattgattgtggtatttcaaatttaagaattgttaaaaaattaattgaaaatggat 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aagttattgattgtggtatttcaaatttaagaattgttaaaaaattaattgaaaatggat 446


Query: 177 ttacattttccaagaaatcatttaataattgttttgaaaatgttaaagttttagaatata 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttacattttccaagaaatcatttaataattgttttgaaaatgttaaagttttagaatata 386


Query: 237 ttcataatcatttcccaaaacaagaatgtacaactgaagcaattgatttagcaagtcgtc 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttcataatcatttcccaaaacaagaatgtacaactgaagcaattgatttagcaagtcgtc 326


Query: 297 atgattgttataattctgttaaattcttattggataatagaaatgaaggttatgatatgg 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgattgttataattctgttaaattcttattggataatagaaatgaaggttatgatatgg 266


Query: 357 caattcaattttgtttaacaagaggttggtttgaaattattgaattattaagatcaactc 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caattcaattttgtttaacaagaggttggtttgaaattattgaattattaagatcaactc 206


Query: 417 aaagatataaagatttacataatccgtgtatccctcaaaaacaacctctttattttaatc 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 aaagatataaagatttacataatccgtgtatccctcaaaaacaacctctttattttaatc 146


Query: 477 aaatcgatcaaatcatttcaatcaattcttcaatgatgttatcaattgtaattaaagaaa 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 aaatcgatcaaatcatttcaatcaattcttcaatgatgttatcaattgtaattaaagaaa 86


Query: 537 atggtgatataaaattaccaataacaggtcaacaaattacaaatgcaattaaaaagtctg 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85  atggtgatataaaattaccaataacaggtcaacaaattacaaatgcaattaaaaagtctg 26


Query: 597 gtcatcttatcaattttccatcaa 620
           ||||||||||||||||||||||||
Sbjct: 25  gtcatcttatcaattttccatcaa 2

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 766,102,888
Number of extensions: 50156976
Number of successful extensions: 4281399
Number of sequences better than 10.0: 242
Length of query: 620
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 597
Effective length of database: 93,106,754,628
Effective search space: 55584732512916
Effective search space used: 55584732512916
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.10
Homology vs Protein 
Query= Contig-U14123-1 (Contig-U14123-1Q) /CSM_Contig/Contig-U14123-1Q.Seq.d
         (620 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC114263_21(AC114263|pid:none) Dictyostelium discoideum chromoso...    41   0.024
(Q5UQC4) RecName: Full=Putative ankyrin repeat protein R229;  &A...    33   8.5

>AC114263_21(AC114263|pid:none) Dictyostelium discoideum chromosome
           2 map 215673-367476 strain AX4, complete sequence.
          Length = 428

 Score = 41.2 bits (95), Expect = 0.024
 Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
 Frame = +2

Query: 140 NLRIVKKLIEN---GFTFSKKSFNNCFENVKVLEYIHNHFPKQECTTEAIDLASRHDCYN 310
           +L I+K L EN   G T +    +  + +++V++++H +   + CT  AI +A  +  Y
Sbjct: 225 DLEILKFLHENRKEGATVNAMDLSAQYGHLEVVKFLHEN-RAEGCTKNAISMAVENGHYE 283

Query: 311 SVKFLLDNRNEGYDMAIQFCLTRGWFEIIELLRSTQRYKDLHNPCIPQKQPL 466
            VKFL  NR EG+    Q  ++R   +   +L+    ++ LH   I +K  L
Sbjct: 284 IVKFLCQNRTEGFS---QHTISRTKNQ--NILKLLTDFQSLHGGFIGKKNKL 330

 Score = 35.0 bits (79), Expect = 1.7
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = +2

Query: 215 NVKVLEYIHNHFPKQECTTEAIDLASRHDCYNSVKFLLDNRNEGYDM-AIQFCLTRGWFE 391
           N K+    +N+  +   +T +IDL++RH     +KFL +NR EG  + A+      G  E
Sbjct: 196 NNKIKNNDNNNNKRGYASTSSIDLSARHGDLEILKFLHENRKEGATVNAMDLSAQYGHLE 255

Query: 392 IIELLRSTQ 418
           +++ L   +
Sbjct: 256 VVKFLHENR 264

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 670,616,257
Number of extensions: 9863495
Number of successful extensions: 20364
Number of sequences better than 10.0: 2
Number of HSP's gapped: 20359
Number of HSP's successfully gapped: 3
Length of query: 206
Length of database: 1,051,180,864
Length adjustment: 123
Effective length of query: 83
Effective length of database: 653,084,107
Effective search space: 54205980881
Effective search space used: 54205980881
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.66  gvh: 0.30  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.08
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for Contig-U14123-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0