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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U02482-1
Contig ID Contig-U02482-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U02482-1 (Contig-U02482-1Q) /CSM_Contig/Contig-U02482-1Q.Seq.d
ATTTAACCATTCTATAAATAAAATGACAAAAAAATCGAAAAAATAAACAA
AGAAAGTAATATTTCAAAAACAATAATTACAAATGCCCAAATTGATCAAA
AAATGAGAAATGAGGAAGCTGAAAAATTATTTTGGATTTTTAATAATAAA
GTTAGACCAATTAATTATAGCGAAATTGTTGAAAACACTACACCAAGAAA
ATCATCAATAAATAGAGAAAAGATTGAAAGTGAAAATAATGGTCAGGTTT
ATAATGAATTATTTTTTTTTAAATTGTTATTAAATGAAGATTTATCAAAA
TTTTTAATTTCATTAATTAATACAAATCTTAGACATGAGAGGGAGAAAAA
ATTAGATAAAGGGAAGGATATTTCAAGATTAAATGATTTAACCGATATTA
CATTCTGGAAATTTATAACTGATTATTTAAAAAATATTTATTCAAATAAA
AACAATGATAAGATACCACCTGAATTAATTAATTTAAAAATGATGGATCA
CAATAGATATTCAGCAGTACATAATGTTTTGGATATGAAAAGTCATAGAT
TTGAAGAGTATTGTGAAATATTTATGAACAGTGCATTGAAATATATTAAT
ATTGGTAACGTTCTCAATTGTGATGAAACAATATACGCATATTATGGGAA
AGATCATATATTGATTAATAATGATAGCAAACCCCATTCAGTCGGAATTG
AAGCATATAGTCTAACAACCAAATTGAATATTAGTAATTGTCCATATGTA
ATTAGTTATGGTCCAAGAACACCAGAAAACTGTCAATCTCCTTTCAATTC
ATTAAAAACCCTTTTGGATAATTTACATTCAAAATATAATTGGGAGGATC
CAAGGAATAACTTAATCGTATGTTGCGATAGTGCCTTTGCATTAGTAAAT
AATAAAGAATGTTTAGATGAATTGAAATGTCGTATTTTATCCTCAACAAG
GAAGAGTGGCGTGACTGTTCCTCAAGAAATAAAATATTCGTCAAACCTTT
ATTAACCATACATAAAACATTCCTTTTTTATGATGAAAGCACAGGACTAT
TGTACGAGTATACCAAAAATACCGCTGGTCATATCAATTGCATTGCAACA
AATCCATATTCAAGATATTCAAACCCATATGTGGAAATTAATAATAATCT
AAATATAGAACAATTTGCAACTATTGGAAATTTATTTCGTTTTTCAAAAA
AAGAATTAGAACTAATTTTTGTTGGTGAGACATTGCATGGGACAACATTG
GAAATATTAAATGACAAATATAAAACTAACTTTGTAAAACCACCATGTGG
TCCTTTTTGGAACGAACAAATGTTGAAGAAATTATCAGCTGAACACATAG
CTCAAATATATAATGATAAATACAAAAAAGAAAACAACAATCTTAACAAA
AACGACAAAATTAAAAAAATATTAGAACCATTGGATAGCACTCAAGATGG
TGGGATATATGATAAAAACAAAAATTATTCCAAGAAGGAACTACAAGATT
TAAAAATAAAAGTTATTGGTACTCATCAGAATCGTTCCCAAATGATTCAT
GATCAATATATTTTCTGGTACAACCTTGTAGACATCACAGACAAACGTTA
CTATGCTACAATTAGAGGTAGCTCTTCCCACTCGTATACTAAATTATTTA
TATTAGGTGGTTTGTTTGATTTAATACTAAATTCATATTCTCTGCACCGT
GAATATCATGAAATGGAATTAGAATGTAAAAATCCAGAAAATCAACCTCC
GGAAATAATTCAAACAATAAATAAATTTGTNAATCCCTCATTTTTCAATT
TCANAATTAAAGAATACAATAATCAATTAC
Gap no gap
Contig length 1830
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 6320329
End point 6318578
Strand (PLUS/MINUS) MINUS
Number of clones 4
Number of EST 6
Link to clone list U02482
List of clone(s) 

est1=CFB521F,1,557
est2=AFC434F,5,504
est3=AFH271Z,99,227
est4=SFE275E,123,1391
est5=AFC434Z,1184,1803
est6=CFB521Z,1212,1831
Translated Amino Acid sequence 
i*pfyk*NDKKIEKINKESNISKTIITNAQIDQKMRNEEAEKLFWIFNNKVRPINYSEIV
ENTTPRKSSINREKIESENNGQVYNELFFFKLLLNEDLSKFLISLINTNLRHEREKKLDK
GKDISRLNDLTDITFWKFITDYLKNIYSNKNNDKIPPELINLKMMDHNRYSAVHNVLDMK
SHRFEEYCEIFMNSALKYINIGNVLNCDETIYAYYGKDHILINNDSKPHSVGIEAYSLTT
KLNISNCPYVISYGPRTPENCQSPFNSLKTLLDNLHSKYNWEDPRNNLIVCCDSAFALVN
NKECLDELKCRILSSTRKSGVTVPQEIKYSSNLY*pyikhsffmmkaqdyctsipkiplv
isialqqihiqdiqthmwkliii*i*nnlqlleiyfvfqkkn*n*fllvrhcmgqhwky*
mtnikltl*nhhvvlfgtnkc*rnyqlnt*lkyimintkkkttiltkttklkky*nhwia
lkmvgymiktkiiprrnyki*k*kllvlirivpk*fminifsgttl*tsqtnvtmlqlev
alptrilnyly*vvcli*y*ihilctvnimkwn*nvkiqkinlrk*fkq*inlxiphfsi
sxlkntiiny
Translated Amino Acid sequence (All Frames) 
Frame A:
i*pfyk*NDKKIEKINKESNISKTIITNAQIDQKMRNEEAEKLFWIFNNKVRPINYSEIV
ENTTPRKSSINREKIESENNGQVYNELFFFKLLLNEDLSKFLISLINTNLRHEREKKLDK
GKDISRLNDLTDITFWKFITDYLKNIYSNKNNDKIPPELINLKMMDHNRYSAVHNVLDMK
SHRFEEYCEIFMNSALKYINIGNVLNCDETIYAYYGKDHILINNDSKPHSVGIEAYSLTT
KLNISNCPYVISYGPRTPENCQSPFNSLKTLLDNLHSKYNWEDPRNNLIVCCDSAFALVN
NKECLDELKCRILSSTRKSGVTVPQEIKYSSNLY*pyikhsffmmkaqdyctsipkiplv
isialqqihiqdiqthmwkliii*i*nnlqlleiyfvfqkkn*n*fllvrhcmgqhwky*
mtnikltl*nhhvvlfgtnkc*rnyqlnt*lkyimintkkkttiltkttklkky*nhwia
lkmvgymiktkiiprrnyki*k*kllvlirivpk*fminifsgttl*tsqtnvtmlqlev
alptrilnyly*vvcli*y*ihilctvnimkwn*nvkiqkinlrk*fkq*inlxiphfsi
sxlkntiiny


Frame B:
fnhsinkmtkkskk*tkkvifqkq*lqmpklikk*emrklknyfgfliikldqliiakll
ktlhqenhq*iekrlkvkimvrfimnyfflncy*mkiyqnf*fh*liqildmrgrkn*ik
grifqd*mi*pilhsgnl*lii*kifiqiktmiryhln*li*k*witidiqqyimfwi*k
vidlksivkyl*tvh*nililvtfsivmkqythimgkiiy*limianpiqselkhiv*qp
n*ilvivhm*lvmvqehqktvnllsih*kpfwiiyiqniigriqgit*syvaivplh**i
iknv*mn*nvvfypqqgrva*lflkk*nirqtfinht*nipfl**khrtivrvyqkyrws
yqlhcnksifkifkpicgn***skyrticnywkfisffkkrirtnfcw*diawdnignik
*qi*n*lckttmwsflertnveeiis*thssni***iqkrkqqs*qkrqn*knirtig*h
srwwdi**kqklfqegttrfknksywyssesfpnds*siyflvqpcrhhrqtllcyn*r*
lfplvy*iiyirwfv*fntkfifsap*is*ngirm*ksrkstsgnnsnnk*icxslifqf
xn*riq*si


Frame C:
ltil*ik*qknrknkqrk*yfknnnykcpn*sknek*gs*kiildf***s*tn*l*rnc*
khytkkiink*rkd*k*k*wsgl**iiff*ivik*rfikifnfin*yks*t*egekir*r
egyfkik*fnryyileiyn*lfkkylfk*kq**dtt*in*fkndgsq*ifsst*cfgyek
s*i*rvl*niyeqcieiy*yw*rsql**nnirilwersyid****qtpfsrn*si*snnq
iey**lsicn*lwskntrklsisfqfiknpfg*ftfki*lggske*lnrmlr*clcisk*
*rmfr*iemsyfilnkeewrdcssrnkifvkplltihktflfydestgllyeytkntagh
inciatnpysrysnpyveinnnlnieqfatignlfrfskkelelifvgetlhgttleiln
dkyktnfvkppcgpfwneqmlkklsaehiaqiyndkykkennnlnkndkikkilepldst
qdggiydknknyskkelqdlkikvigthqnrsqmihdqyifwynlvditdkryyatirgs
sshsytklfilgglfdlilnsyslhreyhemelecknpenqppeiiqtinkfvnpsffnf
xikeynnql
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U02482-1 (Contig-U02482-1Q)
/CSM_Contig/Contig-U02482-1Q.Seq.d
         (1830 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U02482-1 (Contig-U02482-1Q) /CSM_Contig/Conti...  2506  0.0
Contig-U12509-1 (Contig-U12509-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U06657-1 (Contig-U06657-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U04645-1 (Contig-U04645-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U12382-1 (Contig-U12382-1Q) /CSM_Contig/Conti...    38  0.033
Contig-U11322-1 (Contig-U11322-1Q) /CSM_Contig/Conti...    38  0.033
Contig-U09769-1 (Contig-U09769-1Q) /CSM_Contig/Conti...    38  0.033
Contig-U14702-1 (Contig-U14702-1Q) /CSM_Contig/Conti...    36  0.13
Contig-U14334-1 (Contig-U14334-1Q) /CSM_Contig/Conti...    36  0.13
Contig-U13841-1 (Contig-U13841-1Q) /CSM_Contig/Conti...    36  0.13

>Contig-U02482-1 (Contig-U02482-1Q) /CSM_Contig/Contig-U02482-1Q.Seq.d
          Length = 1830

 Score = 2506 bits (1264), Expect = 0.0
 Identities = 1296/1312 (98%)
 Strand = Plus / Plus

                                                                        
Query: 56   gtaatatttcaaaaacaataattacaaatgcccaaattgatcaaaaaatgagaaatgagg 115
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56   gtaatatttcaaaaacaataattacaaatgcccaaattgatcaaaaaatgagaaatgagg 115

                                                                        
Query: 116  aagctgaaaaattattttggatttttaataataaagttagaccaattaattatagcgaaa 175
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116  aagctgaaaaattattttggatttttaataataaagttagaccaattaattatagcgaaa 175

                                                                        
Query: 176  ttgttgaaaacactacaccaagaaaatcatcaataaatagagaaaagattgaaagtgaaa 235
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176  ttgttgaaaacactacaccaagaaaatcatcaataaatagagaaaagattgaaagtgaaa 235

                                                                        
Query: 236  ataatggtcaggtttataatgaattannnnnnnnnaaattgttattaaatgaagatttat 295
            ||||||||||||||||||||||||||         |||||||||||||||||||||||||
Sbjct: 236  ataatggtcaggtttataatgaattatttttttttaaattgttattaaatgaagatttat 295

                                                                        
Query: 296  caaaatttttaatttcattaattaatacaaatcttagacatgagagggagaaaaaattag 355
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296  caaaatttttaatttcattaattaatacaaatcttagacatgagagggagaaaaaattag 355

                                                                        
Query: 356  ataaagggaaggatatttcaagattaaatgatttaaccgatattacattctggaaattta 415
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356  ataaagggaaggatatttcaagattaaatgatttaaccgatattacattctggaaattta 415

                                                                        
Query: 416  taactgattatttaaaaaatatttattcaaataaaaacaatgataagataccacctgaat 475
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416  taactgattatttaaaaaatatttattcaaataaaaacaatgataagataccacctgaat 475

                                                                        
Query: 476  taattaatttaaaaatgatggatcacaatagatattcagcagtacataatgttttggata 535
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476  taattaatttaaaaatgatggatcacaatagatattcagcagtacataatgttttggata 535

                                                                        
Query: 536  tgaaaagtcatagatttgaagagtattgtgaaatatttatgaacagtgcattgaaatata 595
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536  tgaaaagtcatagatttgaagagtattgtgaaatatttatgaacagtgcattgaaatata 595

                                                                        
Query: 596  ttaatattggtaacgttctcaattgtgatgaaacaatatacgcatattatgggaaagatc 655
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596  ttaatattggtaacgttctcaattgtgatgaaacaatatacgcatattatgggaaagatc 655

                                                                        
Query: 656  atatattgattaataatgatagcaaaccccattcagtcggaattgaagcatatagtctaa 715
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656  atatattgattaataatgatagcaaaccccattcagtcggaattgaagcatatagtctaa 715

                                                                        
Query: 716  caaccaaattgaatattagtaattgtccatatgtaattagttatggtccaagaacaccag 775
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716  caaccaaattgaatattagtaattgtccatatgtaattagttatggtccaagaacaccag 775

                                                                        
Query: 776  aaaactgtcaatctcctttcaattcattaaaaacccttttggataatttacattcaaaat 835
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776  aaaactgtcaatctcctttcaattcattaaaaacccttttggataatttacattcaaaat 835

                                                                        
Query: 836  ataattgggaggatccaaggaataacttaatcgtatgttgcgatagtgcctttgcattag 895
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836  ataattgggaggatccaaggaataacttaatcgtatgttgcgatagtgcctttgcattag 895

                                                                        
Query: 896  taaataataaagaatgtttagatgaattgaaatgtcgtattttatcctcaacaaggaaga 955
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896  taaataataaagaatgtttagatgaattgaaatgtcgtattttatcctcaacaaggaaga 955

                                                                        
Query: 956  gtggcgtgactgttcctcaagaaataaaatattcgtcaaacctttattaaccatacataa 1015
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956  gtggcgtgactgttcctcaagaaataaaatattcgtcaaacctttattaaccatacataa 1015

                                                                        
Query: 1016 aacattccttttttatgatgaaagcacaggactattgtacgagtataccaaaaataccgc 1075
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1016 aacattccttttttatgatgaaagcacaggactattgtacgagtataccaaaaataccgc 1075

                                                                        
Query: 1076 tggtcatatcaattgcattgcaacaaatccatattcaagatattcaaacccatatgtgga 1135
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1076 tggtcatatcaattgcattgcaacaaatccatattcaagatattcaaacccatatgtgga 1135

                                                                        
Query: 1136 aattaataataatctaaatatagaacaatttgcaactattggaaatttatttcgtttttc 1195
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1136 aattaataataatctaaatatagaacaatttgcaactattggaaatttatttcgtttttc 1195

                                                                        
Query: 1196 nnnnnnngaattagaactaatttttgttggtgagacattgcatgggacaacattggaaat 1255
                   |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1196 aaaaaaagaattagaactaatttttgttggtgagacattgcatgggacaacattggaaat 1255

                                                                        
Query: 1256 attaaatgacaaatataaaactaactttgtaaaaccaccatgtggtcctttttggaacga 1315
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1256 attaaatgacaaatataaaactaactttgtaaaaccaccatgtggtcctttttggaacga 1315

                                                                
Query: 1316 acaaatgttgaagaaattatcagctgaacacatagctcaaatatataatgat 1367
            ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1316 acaaatgttgaagaaattatcagctgaacacatagctcaaatatataatgat 1367


 Score =  803 bits (405), Expect = 0.0
 Identities = 411/411 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1420 tattagaaccattggatagcactcaagatggtgggatatatgataaaaacaaaaattatt 1479
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1420 tattagaaccattggatagcactcaagatggtgggatatatgataaaaacaaaaattatt 1479

                                                                        
Query: 1480 ccaagaaggaactacaagatttaaaaataaaagttattggtactcatcagaatcgttccc 1539
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1480 ccaagaaggaactacaagatttaaaaataaaagttattggtactcatcagaatcgttccc 1539

                                                                        
Query: 1540 aaatgattcatgatcaatatattttctggtacaaccttgtagacatcacagacaaacgtt 1599
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1540 aaatgattcatgatcaatatattttctggtacaaccttgtagacatcacagacaaacgtt 1599

                                                                        
Query: 1600 actatgctacaattagaggtagctcttcccactcgtatactaaattatttatattaggtg 1659
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1600 actatgctacaattagaggtagctcttcccactcgtatactaaattatttatattaggtg 1659

                                                                        
Query: 1660 gtttgtttgatttaatactaaattcatattctctgcaccgtgaatatcatgaaatggaat 1719
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1660 gtttgtttgatttaatactaaattcatattctctgcaccgtgaatatcatgaaatggaat 1719

                                                                        
Query: 1720 tagaatgtaaaaatccagaaaatcaacctccggaaataattcaaacaataaataaatttg 1779
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1720 tagaatgtaaaaatccagaaaatcaacctccggaaataattcaaacaataaataaatttg 1779

                                                               
Query: 1780 tnaatccctcatttttcaatttcanaattaaagaatacaataatcaattac 1830
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1780 tnaatccctcatttttcaatttcanaattaaagaatacaataatcaattac 1830


>Contig-U12509-1 (Contig-U12509-1Q) /CSM_Contig/Contig-U12509-1Q.Seq.d
          Length = 1348

 Score = 40.1 bits (20), Expect = 0.008
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1492 tacaagatttaaaaataaaa 1511
            ||||||||||||||||||||
Sbjct: 196  tacaagatttaaaaataaaa 215


>Contig-U06657-1 (Contig-U06657-1Q) /CSM_Contig/Contig-U06657-1Q.Seq.d
          Length = 637

 Score = 40.1 bits (20), Expect = 0.008
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 425 atttaaaaaatatttattcaaata 448
           |||| |||||||||||||||||||
Sbjct: 540 atttgaaaaatatttattcaaata 563


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 38,559
Number of Sequences: 6905
Number of extensions: 38559
Number of successful extensions: 4347
Number of sequences better than 10.0: 461
length of query: 1830
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1814
effective length of database: 5,564,391
effective search space: 10093805274
effective search space used: 10093805274
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 5.17
Homology vs DNA 
Query= Contig-U02482-1 (Contig-U02482-1Q) /CSM_Contig/Contig-U02482-1Q.Seq.d
         (1830 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ400334) Dictyostelium discoideum cDNA clone:dds9e20, 3' e...  1084   0.0    2
(EU003987) Dictyostelium discoideum SslA2 mRNA, complete cds.     803   0.0    5
(AF508975) Dictyostelium discoideum SslA1 (sslA1) mRNA, comp...   716   0.0    5
(AC115680) Dictyostelium discoideum chromosome 2 map 4915084...   311   0.0    6
(BJ373813) Dictyostelium discoideum cDNA clone:ddc4i05, 3' e...   803   0.0    2
(BJ341118) Dictyostelium discoideum cDNA clone:dda5d10, 3' e...   755   0.0    2
(BJ388487) Dictyostelium discoideum cDNA clone:dds9e20, 5' e...   456   0.0    4
(BJ360077) Dictyostelium discoideum cDNA clone:ddc4i05, 5' e...   468   0.0    2
(BJ324207) Dictyostelium discoideum cDNA clone:dda5d10, 5' e...   363   e-167  2
(BJ342979) Dictyostelium discoideum cDNA clone:dda15m18, 3' ...    90   4e-13  1
(CP000102) Methanosphaera stadtmanae DSM 3091, complete genome.    38   8e-07  18
(AJ294725) Astasia longa complete chloroplast genome.              38   2e-06  12
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    38   3e-06  20
(AL844509) Plasmodium falciparum chromosome 13.                    36   9e-06  16
(AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s...    40   3e-05  15
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255...    36   0.004  21
(AE014831) Plasmodium falciparum 3D7 chromosome 10 section 3...    34   0.006  16
(AC222112) Bos taurus clone CH240-371I18, WORKING DRAFT SEQU...    42   0.009  6
(CR925678) Ehrlichia ruminantium str. Welgevonden, complete ...    36   0.010  21
(CR767821) Ehrlichia ruminantium strain Welgevonden, complet...    36   0.010  21
(AC108697) Homo sapiens 3 BAC RP11-8N23 (Roswell Park Cancer...    40   0.012  11
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen...    34   0.013  15
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    34   0.013  20
(DD209297) test.                                                   38   0.014  7
(DD209169) test.                                                   38   0.014  7
(AX826134) Sequence 386 from Patent WO03072821.                    38   0.014  7
(AX826006) Sequence 258 from Patent WO03072821.                    38   0.014  7
(AX822494) Sequence 386 from Patent EP1340818.                     38   0.014  7
(AX822366) Sequence 258 from Patent EP1340818.                     38   0.014  7
(AX356418) Sequence 52 from Patent WO0181622.                      38   0.014  7
(FM992693) Candida dubliniensis CD36 chromosome 6, complete ...    36   0.044  2
(AC122312) Mus musculus BAC clone RP23-298K16 from 19, compl...    36   0.048  2
(AC126795) Mus musculus BAC clone RP24-576D17 from chromosom...    36   0.049  2
(AM450272) Vitis vinifera contig VV78X121062.8, whole genome...    38   0.051  5
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    32   0.053  20
(AE014824) Plasmodium falciparum 3D7 chromosome 14 section 9...    32   0.053  15
(AR545632) Sequence 763 from patent US 6747137.                    36   0.059  2
(AL035476) Plasmodium falciparum MAL4P3.                           36   0.073  15
(AC220043) Bos taurus clone CH240-315B3, WORKING DRAFT SEQUE...    52   0.078  1
(AC218736) Bos taurus clone CH240-296B20, WORKING DRAFT SEQU...    52   0.078  1
(DN889063) nag21a09.x1 Rabbit eye minus lens and cornea. Unn...    52   0.078  1
(CA755447) BR030020000_PLATE_G07_55_055.ab1 OA Oryza sativa ...    52   0.078  1
(CR450841) Zebrafish DNA sequence from clone DKEY-16N9 in li...    34   0.084  10
(CP000551) Prochlorococcus marinus str. AS9601, complete gen...    38   0.11   20
(BX248583) Blochmannia floridanus complete genome.                 32   0.16   20
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    38   0.17   2
(AC083765) Homo sapiens chromosome 11 clone CTD-2033N15 map ...    44   0.17   3
(AL109814) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    32   0.18   10
(CR382399) Plasmodium falciparum chromosome 6, complete sequ...    38   0.19   16
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975...    34   0.20   9
(AF404306) Rhizophydium sp. 136 mitochondrion, complete genome.    34   0.20   9
(FB571381) Sequence 248 from Patent EP1865317.                     36   0.23   11
(FB571325) Sequence 192 from Patent EP1865317.                     36   0.23   11
(BX005394) Zebrafish DNA sequence from clone DKEY-3N15 in li...    36   0.24   8
(AP009049) Clostridium kluyveri NBRC 12016 DNA, complete gen...    36   0.28   19
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         40   0.29   16
(AC154364) Mus musculus BAC clone RP24-559G11 from chromosom...    40   0.31   8
(CU239729) Equus caballus GSS, BAC clone CH241-381A16, T7 en...    38   0.32   3
(CU029555) Equus caballus GSS, BAC clone CH241-126M22, SP6 e...    38   0.33   3
(EU746614) Nasonia giraulti strain RV2 12S ribosomal RNA gen...    34   0.37   5
(AY242996) Antheraea pernyi mitochondrion, complete genome.        32   0.40   6
(AC187794) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB...    36   0.40   8
(AY691420) Planococcus ficus cytochrome b (cytb) pseudogene,...    40   0.42   3
(FH038454) CHO_OF3286xp08r1.ab1 CHO_OF3 Nicotiana tabacum ge...    30   0.43   4
(AC166330) Glycine max clone gmw1-52d1, complete sequence.         30   0.44   11
(CR382398) Plasmodium falciparum chromosome 6, complete sequ...    34   0.45   14
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    34   0.47   17
(AE014817) Plasmodium falciparum 3D7 chromosome 14 section 2...    38   0.48   13
(FI291049) AdH1005-CPY2-J10TF AdH1 Arachis duranensis genomi...    40   0.52   2
(CP000673) Clostridium kluyveri DSM 555, complete genome.          36   0.53   18
(AC116925) Dictyostelium discoideum chromosome 2 map 4189423...    40   0.53   6
(BX323464) Zebrafish DNA sequence from clone CH211-93E11 in ...    40   0.54   6
(DQ223429) Liriodendron tulipifera putative Gigantea gene, p...    38   0.61   3
(AX344559) Sequence 10 from Patent WO0200932.                      36   0.63   12
(DQ870926) Bombus ignitus mitochondrion, complete genome.          34   0.67   7
(AM451888) Vitis vinifera contig VV78X130197.5, whole genome...    42   0.68   4
(CR925677) Ehrlichia ruminantium str. Gardel, complete genome.     36   0.71   18
(AJ012166) Canis familiaris TCTA gene, AMT gene, NICN1 gene,...    42   0.73   3
(AC187167) Glycine max clone gmw1-21h16, WORKING DRAFT SEQUE...    30   0.75   11
(AC126016) Medicago truncatula clone mth2-15g22, WORKING DRA...    36   0.76   8
(AY894835) Phytophthora infestans haplotype Ia mitochondrion...    32   0.77   8
(U17009) Phytophthora infestans mitochondrion, complete genome.    32   0.77   8
(AX345388) Sequence 459 from Patent WO0200928.                     32   0.82   7
(EY891892) TS27-C2-300-076-A05-CT.F Sunki mandarin bark, gre...    34   0.85   2
(CZ541415) SRAA-aad37h08.b1 Strongyloides ratti whole genome...    38   0.85   2
(AB240572) Agonoscelis nubila mitochondrial gene for 16S rRN...    40   0.95   2
(AY898628) Phytophthora infestans haplotype IIb mitochondrio...    32   0.99   8
(AY898627) Phytophthora infestans haplotype IIa mitochondrio...    32   1.00   8
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         30   1.00   16
(AE014832) Plasmodium falciparum 3D7 chromosome 10 section 4...    32   1.0    19
(AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s...    34   1.2    16
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    40   1.2    16
(BX908777) Zebrafish DNA sequence from clone CH211-133H13 in...    48   1.2    1
(BX649308) Zebrafish DNA sequence from clone CH211-223K15 in...    48   1.2    1
(BX511142) Zebrafish DNA sequence from clone CH211-69B22 in ...    48   1.2    1
(AC162378) Mus musculus BAC clone RP24-82K1 from chromosome ...    48   1.2    1
(AC122041) Mus musculus BAC clone RP24-443H19 from chromosom...    48   1.2    1
(AM483958) Vitis vinifera, whole genome shotgun sequence, co...    48   1.2    1
(CT025942) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   1.2    1
(CT025865) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   1.2    1
(ED154997) AUAC-aak63d03.g1 Ascaris suum whole genome shotgu...    48   1.2    1
(DU035847) 18232 Tomato HindIII BAC Library Solanum lycopers...    48   1.2    1
(CT742658) Paramecium tetraurelia 5-PRIME EST from clone LK0...    48   1.2    1
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    38   1.2    17
(FG527240) 030706KAYC002937HT (KAYC) Actinidia chinensis you...    46   1.3    2
(FG525967) 030628KAYC001482HT (KAYC) Actinidia chinensis you...    46   1.4    2
(FG527557) 030708KAYC003632HT (KAYC) Actinidia chinensis you...    46   1.4    2
(AC203103) Pan troglodytes BAC clone CH251-585K13 from chrom...    34   1.4    9
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    32   1.4    18
(FG526615) 030704KAYC002247HT (KAYC) Actinidia chinensis you...    46   1.5    2
(FG526551) 030704KAYC002178HT (KAYC) Actinidia chinensis you...    46   1.5    2
(BD460620) Diagnosis of Diseases Associated with Cell Cycle.       34   1.5    7
(BD452542) Diagnosis of Diseases Associated with Cell Cycle.       34   1.5    7
(AX348929) Sequence 387 from Patent WO0202807.                     34   1.5    7
(AX347132) Sequence 2203 from Patent WO0200928.                    34   1.5    7
(AX344522) Sequence 369 from Patent WO0200926.                     34   1.5    7
(AX252156) Sequence 417 from Patent WO0168911.                     34   1.5    7
(FG526706) 030704KAYC002344HT (KAYC) Actinidia chinensis you...    46   1.5    2
(FG526882) 030704KAYC002535HT (KAYC) Actinidia chinensis you...    46   1.5    2
(FG526062) 030628KAYC001597HT (KAYC) Actinidia chinensis you...    46   1.5    2
(FG525809) 030628KAYC001302HT (KAYC) Actinidia chinensis you...    46   1.5    2
(AC133107) Homo sapiens BAC clone RP11-640O10 from 2, comple...    34   1.6    8
(FG526597) 030704KAYC002229HT (KAYC) Actinidia chinensis you...    46   1.6    2
(FG526522) 030704KAYC002144HT (KAYC) Actinidia chinensis you...    46   1.6    2
(AM661551) Entamoeba moshkovskii FIC GSS, clone mosh111e02.p1k.    40   1.7    2
(AC183994) Echinops telfairi clone CH238-441G7, complete seq...    44   1.7    5
(BX005275) Zebrafish DNA sequence from clone DKEY-118J18 in ...    40   1.8    7
(AM444607) Vitis vinifera contig VV78X126349.14, whole genom...    38   1.8    4
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    32   1.8    15
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    34   1.8    13
(AM644540) Entamoeba moshkovskii FIC GSS, clone mosh012c11.p1k.    40   1.9    2
(Z67753) Odontella sinensis complete chloroplast genome.           32   1.9    9
(AC174301) Medicago truncatula clone mth2-91o18, complete se...    40   1.9    10
(FP090260) Brassica rapa subsp. pekinensis clone KBrB030P02,...    36   1.9    7
(FJ006933) Brachyspira intermedia strain HB60 VSH1 region ge...    36   1.9    5
(AP007780) Lotus japonicus genomic DNA, chromosome 3, clone:...    44   2.1    9
(AC111095) Mus musculus clone RP23-174L13, WORKING DRAFT SEQ...    40   2.1    7
(AE014833) Plasmodium falciparum 3D7 chromosome 10 section 5...    34   2.1    11
(CZ514331) GMW2-91O16a.b1 GMW2 Glycine max genomic, genomic ...    42   2.2    2
(DQ642846) Plasmodium falciparum HB3 apicoplast, complete ge...    32   2.2    9
(EJ005755) 1091138282902 Global-Ocean-Sampling_GS-26-01-01-1...    34   2.3    3
(AC118589) Mus musculus chromosome 1, clone RP23-198G19, com...    34   2.4    2
(AC117238) Mus musculus BAC clone RP24-82N17 from 1, complet...    34   2.4    2
(CU550652) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   2.4    2
(U87145) Toxoplasma gondii chloroplast, complete genome.           38   2.4    7
(AE014825) Plasmodium falciparum 3D7 chromosome 14 section 1...    34   2.5    12
(CU329676) Mouse DNA sequence from clone DN-238I7 on chromos...    34   2.5    2
(AM285307) Spiroplasma citri GII3-3X chromosome, contig Cont...    32   2.6    9
(AC134528) Mus musculus BAC clone RP24-502G8 from chromosome...    40   2.6    3
(CP000361) Arcobacter butzleri RM4018, complete genome.            44   2.7    19
(AB236337) Clostridium perfringens F5603 plasmid pCPF5603 DN...    38   2.8    9
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6...    42   3.0    13
(AX344560) Sequence 11 from Patent WO0200932.                      36   3.1    14
(AX458577) Sequence 123 from Patent WO0246454.                     40   3.2    6
(DB844250) Nilaparvata lugens mRNA, EST clone:NLEA7333, 5' e...    34   3.2    2
(AZ738226) RPCI-24-153P13.TJ RPCI-24 Mus musculus genomic cl...    34   3.2    2
(ED632907) GM_WBa0035N02.r GM_WBa Glycine max genomic clone ...    34   3.2    2
(AZ736754) RPCI-24-153L13.TJ RPCI-24 Mus musculus genomic cl...    34   3.2    2
(CV925538) PJ034H1 sporangia, purified Phytophthora infestan...    32   3.2    2
(AE014822) Plasmodium falciparum 3D7 chromosome 14 section 7...    32   3.3    14
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    32   3.4    14
(AC221781) Bos taurus clone CH240-386C1, WORKING DRAFT SEQUE...    38   3.5    9
(AC109351) Homo sapiens BAC clone RP11-417M17 from 4, comple...    34   3.5    11
(AC211731) Populus trichocarpa clone POP065-C13, complete se...    34   3.6    8
(X95275) Plasmodium falciparum complete gene map of plastid-...    32   3.7    6
(AX347340) Sequence 2411 from Patent WO0200928.                    40   3.9    3
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet...    36   3.9    15
(AC109436) Rattus norvegicus clone CH230-220L10, *** SEQUENC...    40   3.9    9
(CS468878) Sequence 69 from Patent EP1748080.                      32   4.0    16
(CS468877) Sequence 68 from Patent EP1748080.                      32   4.0    16
(CS419355) Sequence 69 from Patent WO2006094836.                   32   4.0    16
(CS419354) Sequence 68 from Patent WO2006094836.                   32   4.0    16
(CU469586) Zebrafish DNA sequence from clone CH73-171P15 in ...    44   4.1    5
(AC172298) Glycine max clone gmp1-125b19, complete sequence.       36   4.1    10
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    32   4.2    20
(AL929351) Plasmodium falciparum strain 3D7, chromosome 5, s...    36   4.2    12
(AX345485) Sequence 556 from Patent WO0200928.                     36   4.3    5
(AC008942) Homo sapiens chromosome 5 clone CTD-2320O4, compl...    44   4.6    8
(AC147501) Medicago truncatula chromosome 8 clone mth2-12n2,...    32   4.7    9
(CR788247) Zebrafish DNA sequence from clone DKEY-47M24 in l...    46   4.8    1
(CR759820) Zebrafish DNA sequence from clone DKEY-208C7 in l...    46   4.8    1
(CR450719) Zebrafish DNA sequence from clone DKEY-88F5 in li...    46   4.8    1
(BX511136) Zebrafish DNA sequence from clone DKEY-71E3 in li...    46   4.8    1
(CT573417) Pan troglodytes chromosome X clone PTB-001B13 map...    46   4.8    1
(AC210852) Pongo abelii BAC clone CH276-368O12 from chromoso...    46   4.8    1
(AC159217) Pan troglodytes BAC clone CH251-347C9 from chromo...    46   4.8    1
(AP006634) Lotus japonicus genomic DNA, chromosome 5, clone:...    46   4.8    1
(AC186643) Medicago truncatula chromosome 2 BAC clone mth2-5...    46   4.8    1
(AC067754) Arabidopsis thaliana chromosome 1 BAC T9N14 genom...    46   4.8    1
(BX470111) Human DNA sequence from clone GS1-273L24 on chrom...    46   4.8    1
(BX293995) Human DNA sequence from clone RP11-143H17 on chro...    46   4.8    1
(AC116358) Homo sapiens chromosome 5 clone RP11-679B13, comp...    46   4.8    1
(AC114283) Homo sapiens chromosome 5 clone CTD-2319M2, compl...    46   4.8    1
(AC159572) Callithrix jacchus clone CH259-52N4, WORKING DRAF...    46   4.8    1
(AC146834) Canis lupus familiaris clone RP81-193M22, WORKING...    46   4.8    1
(AC129625) Rattus norvegicus clone CH230-513I16, WORKING DRA...    46   4.8    1
(AC098904) Rattus norvegicus clone CH230-164O24, WORKING DRA...    46   4.8    1
(AC095896) Rattus norvegicus clone CH230-10N20, *** SEQUENCI...    46   4.8    1
(FP016041) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   4.8    1
(FP015904) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   4.8    1
(CU929735) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   4.8    1
(CU582959) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   4.8    1
(AC051636) Homo sapiens chromosome 5 clone RP11-679B13 map 5...    46   4.8    1
(CU467105) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   4.8    1
(CT025901) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   4.8    1
(CT009766) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   4.8    1
(AL645735) Homo sapiens chromosome X clone RP11-273L24 map X...    46   4.8    1
(AL390881) Human DNA sequence *** SEQUENCING CANCELLED *** f...    46   4.8    1
(AC221118) Bos taurus clone CH240-393M23, WORKING DRAFT SEQU...    46   4.8    1
(AC217510) Pongo abelii chromosome UNKNOWN clone CH276-457P6...    46   4.8    1
(AC211822) Chlorocebus aethiops clone CH252-192N23, WORKING ...    46   4.8    1
(AC208774) Callithrix jacchus clone CH259-113D10, WORKING DR...    46   4.8    1
(AC207857) Colobus guereza clone CH272-238M12, WORKING DRAFT...    46   4.8    1
(AC205748) Nomascus leucogenys leucogenys clone CH271-94C18,...    46   4.8    1
(AC196613) Colobus guereza clone CH272-203P13, WORKING DRAFT...    46   4.8    1
(AC016977) Homo sapiens chromosome 18 clone RP11-402H20 map ...    46   4.8    1
(EK171463) 1095458077133 Global-Ocean-Sampling_GS-31-01-01-1...    46   4.8    1
(AL945003) Arabidopsis thaliana T-DNA flanking sequence GK-2...    46   4.8    1
(EI181871) MUGQ_CH252P188N19Sp6_CN283_068 CHORI-252 Vervet M...    46   4.8    1
(ED605140) SALK_140388.54.50.x Arabidopsis thaliana TDNA ins...    46   4.8    1
(DU009495) 241327 Tomato MboI BAC Library Solanum lycopersic...    46   4.8    1
(DE290396) Bombyx mori genomic DNA, BAC clone:BES_023_B15.         46   4.8    1
(CT394444) Sus scrofa genomic clone CH242-459L19, genomic su...    46   4.8    1
(CR332583) mte1-62I15FM1 BAC end, cultivar Jemalong A17 of M...    46   4.8    1
(CR329862) mte1-59M12RM1 BAC end, cultivar Jemalong A17 of M...    46   4.8    1
(BZ770572) SALK_143507.51.10.x Arabidopsis thaliana TDNA ins...    46   4.8    1
(BZ770425) SALK_143360.54.50.x Arabidopsis thaliana TDNA ins...    46   4.8    1
(BH965796) odh86g08.b1 B.oleracea002 Brassica oleracea genom...    46   4.8    1
(BH909497) SALK_054081.40.10.x Arabidopsis thaliana TDNA ins...    46   4.8    1
(CV657275) Mdfrt3110a15.y1 Mdfrt Malus x domestica cDNA clon...    46   4.8    1
(CV629555) Mdfrt3101b21.y1 Mdfrt Malus x domestica cDNA clon...    46   4.8    1
(CR446973) Xenopus tropicalis EST, clone TTbA038b14 3'.            46   4.8    1
(CO637137) USDA-FP_105874 Adult Glassy-winged Sharpshooter H...    46   4.8    1
(BX695321) Xenopus tropicalis EST, clone TNeu090i19 3'.            46   4.8    1
(BX684692) Xenopus tropicalis EST, clone TNeu075h17 3'.            46   4.8    1
(EX537641) AIAC-aaa26d01.b1 Ancylostoma_caninum_EST_Male_pSM...    46   4.8    1
(EX207857) SGT17d3_A05 library_17: tammar wallaby mammary ti...    46   4.8    1
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...    32   5.1    14
(DA789776) Homo sapiens cDNA clone OCBBF2028199, 5' end, mRN...    40   5.2    2
(CK426420) rx15b10.y1 Meloidogyne paranaensis egg SMART pGEM...    40   5.3    2
(CC582989) CH240_378D18.TARBAC13P2 CHORI-240 Bos taurus geno...    38   5.3    3
(CS468836) Sequence 27 from Patent EP1748080.                      40   5.5    7
(CS468835) Sequence 26 from Patent EP1748080.                      40   5.5    7
(CS419313) Sequence 27 from Patent WO2006094836.                   40   5.5    7
(CS419312) Sequence 26 from Patent WO2006094836.                   40   5.5    7
(BX548174) Prochlorococcus marinus MED4 complete genome.           32   5.5    22
(GO153289) CAGA35717.rev CAGA Alvinella pompejana Normalized...    38   5.8    2
(AC025037) Homo sapiens chromosome 01 clone RP11-21A22, WORK...    36   5.9    9
(AC023068) Homo sapiens clone RP11-94P11, WORKING DRAFT SEQU...    42   5.9    10
(CE718473) tigr-gss-dog-17000329637426 Dog Library Canis lup...    38   5.9    2
(AX392735) Sequence 25 from Patent WO0212526.                      32   6.0    9
(AR707082) Sequence 25 from patent US 6933145.                     32   6.0    9
(EG463500) AYAUP02TR pooled cDNA populations Arabidopsis tha...    40   6.1    2
(EG463499) AYAUP02TF pooled cDNA populations Arabidopsis tha...    40   6.1    2
(EJ517763) 1092955110779 Global-Ocean-Sampling_GS-29-01-01-1...    40   6.3    3
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    32   6.3    21
(AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com...    32   6.3    21
(AL034558) Plasmodium falciparum MAL3P2.                           32   6.4    14
(CU633583) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   6.4    7
(CT010458) Mouse DNA sequence from clone RP23-279C9 on chrom...    40   6.5    8
(AL591213) Zebrafish DNA sequence from clone BUSM1-150F13 Co...    36   6.5    7
(GO169294) CAGA43233.fwd CAGA Alvinella pompejana Normalized...    38   6.5    2
(GO169293) CAGA43233.rev CAGA Alvinella pompejana Normalized...    38   6.5    2
(AC091149) Homo sapiens chromosome 18 clone RP11-732P12 map ...    38   6.6    5
(CU651567) M.truncatula DNA sequence from clone MTE1-64C6 on...    40   6.7    4
(GO144477) CAGA30851.rev CAGA Alvinella pompejana Normalized...    38   6.7    2
(GO213214) CAGB24659.fwd CAGB Alvinella pompejana Normalized...    38   6.7    2
(EU028331) Glycine max clone BAC gmw1-89M01 genomic sequence.      40   6.7    9
(AE014836) Plasmodium falciparum 3D7 chromosome 11 section 1...    32   6.9    15
(EK346055) 1095467523102 Global-Ocean-Sampling_GS-31-01-01-1...    40   7.0    2
(AC005140) Plasmodium falciparum chromosome 12 clone PFYACB8...    30   7.1    16
(DN044132) JGI_CABA3169.fwd NIH_XGC_tropKid1 Xenopus (Silura...    36   7.1    2
(AE014838) Plasmodium falciparum 3D7 chromosome 11 section 3...    32   7.2    14
(FI308627) AdH1180-CPY2-J11TF AdH1 Arachis duranensis genomi...    40   7.3    2
(Z66521) Caenorhabditis elegans Cosmid W02B12.                     40   7.3    3
(EJ635465) 1092986900942 Global-Ocean-Sampling_GS-29-01-01-1...    40   7.4    2
(CP000825) Prochlorococcus marinus str. MIT 9215, complete g...    32   7.4    2
(EJ006771) 1091139266635 Global-Ocean-Sampling_GS-26-01-01-1...    36   7.5    2
(AL929353) Plasmodium falciparum strain 3D7, chromosome 5, s...    36   7.5    15
(EJ470864) 1095403409752 Global-Ocean-Sampling_GS-28-01-01-1...    36   7.6    3
(DU108523) JBnY036D02F Brassica napus BAC library JBnY Brass...    44   7.7    2
(EK423723) 1095515647838 Global-Ocean-Sampling_GS-31-01-01-1...    44   7.8    2
(EU686628) Uncultured marine group III euryarchaeote AD1000-...    44   7.8    3
(AX344558) Sequence 9 from Patent WO0200932.                       34   7.9    14
(AE014842) Plasmodium falciparum 3D7 chromosome 11 section 7...    30   7.9    18
(AL034559) Plasmodium falciparum MAL3P7.                           32   8.1    14
(CT737400) Pan troglodytes chromosome X clone CH251-316L07 m...    34   8.1    7
(CU633987) Zebrafish DNA sequence from clone CH1073-375M16 i...    36   8.2    6
(CR854909) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    38   8.2    12
(BX908797) Zebrafish DNA sequence from clone DKEY-43P13 in l...    38   8.3    9
(EK045790) 1092959549234 Global-Ocean-Sampling_GS-31-01-01-1...    34   8.3    3
(AM456440) Vitis vinifera contig VV78X183252.9, whole genome...    38   8.4    3
(FG300896) 1108799246333 New World Screwworm Larvae 9387 EST...    34   8.5    3
(AC157852) Atelerix albiventris clone LB4-260B7, WORKING DRA...    36   8.5    7
(AC006708) Caenorhabditis elegans cosmid Y110A7A, complete s...    36   8.6    5
(AC154156) Oryctolagus cuniculus clone LB1-124G17, WORKING D...    34   8.7    2
(AC157615) Oryctolagus cuniculus clone LB1-167G10, WORKING D...    34   8.7    2
(AF466146) Melipona bicolor mitochondrial genome, partial se...    32   8.7    6
(AC016287) Homo sapiens clone RP11-21L17, WORKING DRAFT SEQU...    34   8.7    8
(AL008970) Plasmodium falciparum MAL3P4.                           32   8.7    11
(EU382073) Arabidopsis halleri subsp. halleri clone BAC_7C17...    32   8.8    2
(AY392444) Dictyostelium discoideum RNA-binding protein gene...    36   8.8    4
(EK057908) 1092960046196 Global-Ocean-Sampling_GS-31-01-01-1...    32   9.1    3
(EG590240) Ga_S1TG_021H03_NP1 Ga_S1TG Gasterosteus aculeatus...    40   9.1    2
(AE014852) Plasmodium falciparum 3D7 chromosome 12, section ...    32   9.2    12
(DW033517) CFW223-F05.y1d-s SHGC-CFW2 Gasterosteus aculeatus...    42   9.4    2
(AX392733) Sequence 23 from Patent WO0212526.                      36   9.4    8
(AR707080) Sequence 23 from patent US 6933145.                     36   9.4    8
(AL049184) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    30   9.5    15
(AP001881) Homo sapiens genomic DNA, chromosome 11q clone:RP...    36   9.6    6
(AC148226) Medicago truncatula clone mth2-5i20, complete seq...    34   9.9    6
(AC087423) Sus scrofa clone RP44-55G2, complete sequence.          40   9.9    6

>(BJ400334) Dictyostelium discoideum cDNA clone:dds9e20, 3' end,
            single read.
          Length = 742

 Score = 1084 bits (547), Expect(2) = 0.0
 Identities = 547/547 (100%)
 Strand = Plus / Minus


Query: 649  aaagatcatatattgattaataatgatagcaaaccccattcagtcggaattgaagcatat 708
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742  aaagatcatatattgattaataatgatagcaaaccccattcagtcggaattgaagcatat 683


Query: 709  agtctaacaaccaaattgaatattagtaattgtccatatgtaattagttatggtccaaga 768
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682  agtctaacaaccaaattgaatattagtaattgtccatatgtaattagttatggtccaaga 623


Query: 769  acaccagaaaactgtcaatctcctttcaattcattaaaaacccttttggataatttacat 828
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622  acaccagaaaactgtcaatctcctttcaattcattaaaaacccttttggataatttacat 563


Query: 829  tcaaaatataattgggaggatccaaggaataacttaatcgtatgttgcgatagtgccttt 888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562  tcaaaatataattgggaggatccaaggaataacttaatcgtatgttgcgatagtgccttt 503


Query: 889  gcattagtaaataataaagaatgtttagatgaattgaaatgtcgtattttatcctcaaca 948
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502  gcattagtaaataataaagaatgtttagatgaattgaaatgtcgtattttatcctcaaca 443


Query: 949  aggaagagtggcgtgactgttcctcaagaaataaaatattcgtcaaacctttattaacca 1008
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442  aggaagagtggcgtgactgttcctcaagaaataaaatattcgtcaaacctttattaacca 383


Query: 1009 tacataaaacattccttttttatgatgaaagcacaggactattgtacgagtataccaaaa 1068
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382  tacataaaacattccttttttatgatgaaagcacaggactattgtacgagtataccaaaa 323


Query: 1069 ataccgctggtcatatcaattgcattgcaacaaatccatattcaagatattcaaacccat 1128
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322  ataccgctggtcatatcaattgcattgcaacaaatccatattcaagatattcaaacccat 263


Query: 1129 atgtggaaattaataataatctaaatatagaacaatttgcaactattggaaatttatttc 1188
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262  atgtggaaattaataataatctaaatatagaacaatttgcaactattggaaatttatttc 203


Query: 1189 gtttttc 1195
            |||||||
Sbjct: 202  gtttttc 196

 Score =  297 bits (150), Expect(2) = 0.0
 Identities = 150/150 (100%)
 Strand = Plus / Minus


Query: 1203 gaattagaactaatttttgttggtgagacattgcatgggacaacattggaaatattaaat 1262
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188  gaattagaactaatttttgttggtgagacattgcatgggacaacattggaaatattaaat 129


Query: 1263 gacaaatataaaactaactttgtaaaaccaccatgtggtcctttttggaacgaacaaatg 1322
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128  gacaaatataaaactaactttgtaaaaccaccatgtggtcctttttggaacgaacaaatg 69


Query: 1323 ttgaagaaattatcagctgaacacatagct 1352
            ||||||||||||||||||||||||||||||
Sbjct: 68   ttgaagaaattatcagctgaacacatagct 39

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 2,344,629,109
Number of extensions: 161525851
Number of successful extensions: 13978893
Number of sequences better than 10.0: 316
Length of query: 1830
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 1806
Effective length of database: 99,340,224,878
Effective search space: 179408446129668
Effective search space used: 179408446129668
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.19
Homology vs Protein 
Query= Contig-U02482-1 (Contig-U02482-1Q) /CSM_Contig/Contig-U02482-1Q.Seq.d
         (1830 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54YC3) RecName: Full=Suppresor of smlA; AltName: Full=Protein ...   583   0.0
AF508975_1(AF508975|pid:none) Dictyostelium discoideum SslA1 (ss...   528   0.0
AC115680_10(AC115680|pid:none) Dictyostelium discoideum chromoso...   246   6e-84
AL035476_37(AL035476|pid:none) Plasmodium falciparum MAL4P3.  &A...    40   0.22
AL035475_43(AL035475|pid:none) Plasmodium falciparum MAL4P2.  &A...    40   0.37
U85963_1(U85963|pid:none) Plasmodium falciparum asparagine-rich ...    40   0.37
AE014188_212(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    39   0.49
U59916_1(U59916|pid:none) Proliferative kidney organism U59916 a...    39   0.83
AE001362_157(AE001362|pid:none) Plasmodium falciparum 3D7 chromo...    38   1.1
AE014187_81(AE014187|pid:none) Plasmodium falciparum 3D7 chromos...    38   1.1
E71606(E71606)hypothetical protein PFB0765w - malaria parasite (...    38   1.1
DQ158856_57(DQ158856|pid:none) Bigelowiella natans nucleomorph c...    38   1.4
AL844509_281(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    38   1.4
AE014185_141(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    38   1.4
AL844505_136(AL844505|pid:none) Plasmodium falciparum 3D7 chromo...    38   1.4
CR382399_52(CR382399|pid:none) Plasmodium falciparum chromosome ...    38   1.4
CU928171_450(CU928171|pid:none) Kluyveromyces thermotolerans str...    37   1.9
AE014187_452(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    37   2.4
CP001039_84(CP001039|pid:none) Nostoc punctiforme PCC 73102 plas...    37   2.4
AE014186_98(AE014186|pid:none) Plasmodium falciparum 3D7 chromos...    37   3.2
CP000685_3913(CP000685|pid:none) Flavobacterium johnsoniae UW101...    37   3.2
BX548174_855(BX548174|pid:none) Prochlorococcus marinus MED4 com...    37   3.2
FM992688_1304(FM992688|pid:none) Candida dubliniensis CD36 chrom...    36   4.1
AL844508_102(AL844508|pid:none) Plasmodium falciparum 3D7 chromo...    36   5.4
(Q9V6K3) RecName: Full=Tyrosine-protein kinase transmembrane rec...    36   5.4
AF037164_1(AF037164|pid:none) Drosophila melanogaster receptor t...    36   5.4
AL844509_669(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    36   5.4
AL844509_608(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    35   7.0
AL844504_88(AL844504|pid:none) Plasmodium falciparum 3D7 chromos...    35   7.0
AE014186_429(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    35   7.0
AL844505_216(AL844505|pid:none) Plasmodium falciparum 3D7 chromo...    35   7.0
AL844505_255(AL844505|pid:none) Plasmodium falciparum 3D7 chromo...    35   7.0
(O97239) RecName: Full=Protein dopey homolog PFC0245c;  &AL03455...    35   7.0
CR382401_2(CR382401|pid:none) Plasmodium falciparum chromosome 6...    35   7.0
AE014188_498(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    35   9.2
AE014188_122(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    35   9.2

>(Q54YC3) RecName: Full=Suppresor of smlA; AltName: Full=Protein
           secondary enhancer of smlA;
          Length = 578

 Score =  583 bits (1503), Expect(2) = 0.0
 Identities = 286/298 (95%), Positives = 286/298 (95%), Gaps = 4/298 (1%)
 Frame = +1

Query: 103 MRNEEAEKLFWIFNNKVRPINYSEIVENTTPRKSSINREKIESENNGQVYNEXXXXXXXX 282
           MRNEEAEKLFWIFNNKVRPINYSEIVENTTPRKSSINREKIESENNGQVYNE
Sbjct: 1   MRNEEAEKLFWIFNNKVRPINYSEIVENTTPRKSSINREKIESENNGQVYNELFFFKLLL 60

Query: 283 NEDLSKFLISLINTNLRHEREKKLDKGKDISRLNDLTDITFWKFITDYLKNIYSNKNNDK 462
           NEDLSKFLISLINTNLRHEREKKLDKGKDISRLNDLTDITFWKFITDYLKNIYSNKNNDK
Sbjct: 61  NEDLSKFLISLINTNLRHEREKKLDKGKDISRLNDLTDITFWKFITDYLKNIYSNKNNDK 120

Query: 463 IPPELINLKMMDHNRYSAVHNVLDMKSHRFEEYCEIFMNSALKYINIGNVLNCDETIYAY 642
           IPPELINLKMMDHNRYSAVHNVLDMKSHRFEEYCEIFMNSALKYINIGNVLNCDETIYAY
Sbjct: 121 IPPELINLKMMDHNRYSAVHNVLDMKSHRFEEYCEIFMNSALKYINIGNVLNCDETIYAY 180

Query: 643 YG----KDHILINNDSKPHSVGIEAYSLTTKLNISNCPYVISYGPRTPENCQSPFNSLKT 810
           YG    KDHILINNDSKPHSVGIEAYSLTTKLNISNCPYVISYGPRTPENCQSPFNSLKT
Sbjct: 181 YGKDAIKDHILINNDSKPHSVGIEAYSLTTKLNISNCPYVISYGPRTPENCQSPFNSLKT 240

Query: 811 LLDNLHSKYNWEDPRNNLIVCCDSAFALVNNKECLDELKCRILSSTRKSGVTVPQEIK 984
           LLDNLHSKYNWEDPRNNLIVCCDSAFALVNNKECLDELKCRILSSTRKSGVTVPQEIK
Sbjct: 241 LLDNLHSKYNWEDPRNNLIVCCDSAFALVNNKECLDELKCRILSSTRKSGVTVPQEIK 298

 Score =  467 bits (1202), Expect(2) = 0.0
 Identities = 232/274 (84%), Positives = 232/274 (84%)
 Frame = +3

Query: 981  KIFVKPLLTIHKTFLFYDESTGLLYEYTKNTAGHINCIATNPYSRYSNPYVEINNNLNIE 1160
            KIFVKPLLTIHKTFLFYDESTGLLYEYTKNTAGHINCIATN YSRYSNPYVEINNNLNIE
Sbjct: 298  KIFVKPLLTIHKTFLFYDESTGLLYEYTKNTAGHINCIATNLYSRYSNPYVEINNNLNIE 357

Query: 1161 QFATIGNLFRFSKKELELIFVGETLHGTTLEILNDKYKTNFVKPPCGPFWNEQMLKKLSA 1340
            QFATIGNLFRFSKKELELIFVGETLHGTTLEILN KYKTNFVKPPCGPFWNEQMLKKLSA
Sbjct: 358  QFATIGNLFRFSKKELELIFVGETLHGTTLEILNGKYKTNFVKPPCGPFWNEQMLKKLSA 417

Query: 1341 EHIAQIXXXXXXXXXXXXXXXXXXXXXXXPLDSTQDGGIYDKNKNYSKKELQDLKIKVIG 1520
            EHIAQI                       PLDSTQDGGIYDKNKNYSKKELQDLKIKVIG
Sbjct: 418  EHIAQIYNDKYKKENNNLNKNDKIKKILEPLDSTQDGGIYDKNKNYSKKELQDLKIKVIG 477

Query: 1521 THQNRSQMIHDQYIFWYNLVDITDKRYYATIRGSSSHSYTKXXXXXXXXXXXXNSYSLHR 1700
            THQNRSQMIHDQYIFWYNLVDITDKRYYATIRGSSSHSYTK            NSYSLHR
Sbjct: 478  THQNRSQMIHDQYIFWYNLVDITDKRYYATIRGSSSHSYTKLFILGGLFDLILNSYSLHR 537

Query: 1701 EYHEMELECKNPENQPPEIIQTINKFVNPSFFNF 1802
            EYHEMELECKNPENQPPEIIQTINKFV    F F
Sbjct: 538  EYHEMELECKNPENQPPEIIQTINKFVESLIFQF 571

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,687,099,493
Number of extensions: 52814936
Number of successful extensions: 146349
Number of sequences better than 10.0: 36
Number of HSP's gapped: 146143
Number of HSP's successfully gapped: 42
Length of query: 610
Length of database: 1,051,180,864
Length adjustment: 135
Effective length of query: 475
Effective length of database: 614,245,399
Effective search space: 291766564525
Effective search space used: 291766564525
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.73  gvh: 0.27  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U02482-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 2
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 0
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0