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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U14115-1
Contig ID Contig-U14115-1
Contig update 2002.12.18
Contig sequence 
>Contig-U14115-1 (Contig-U14115-1Q) /CSM_Contig/Contig-U14115-1Q.Seq.d
AGAAGTTGGTGAAAAACAAGGTATCTATAGTTTAAGTTCTCAAGATAGAT
CATCATCATTACCTCATTCCTCACAAGATGATCAAGCGAAACCATTGATA
ACAGAGAGTGAAATCTTTAGTTCAGAGAGTTTTTTAATTGCAGTATCAGA
TACCGATCATTTAGGACCAGCAATTAAATCAGTATTTGAAAATAATAAAG
AAAAAGAAGTCATAAAGATATTGAATGCATATATCGCTCAAAAAGATTTA
GATATTGAAAAGATTTGTGGTGAAAATCATGAAGGTTTCATTAATTCAGT
AACTGCATTCCTTGGTTTAAAAGGTGAGAATTTAGATTTAAAACAAGATG
TAATCAATTTAAATTATGAACTTCAAGAGATTGGTAGAAAATATGTTACA
AAAGCAGAGGAATTATTTGCTTATAAACAAATCAAAGATAATATAAAGAG
AACAAAAGAAGTTTTAAACAATTGTCAATATGCCATACTTTTAGGTATGA
AAGTCGATGAATATGTACAACAAAAGAAATACTATCAAGCCATTAAAAAC
ATGGATCAATTACATAACGTTTATTTAAAGAAATTATCGGATTTTCAATT
TGCAAGAAATATGGATTATAATATACCAGTNNNNNNNNN
Gap no gap
Contig length 639
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 3506333
End point 3505704
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U14115
List of clone(s) 

est1=AHL826F,1,630
Translated Amino Acid sequence 
EVGEKQGIYSLSSQDRSSSLPHSSQDDQAKPLITESEIFSSESFLIAVSDTDHLGPAIKS
VFENNKEKEVIKILNAYIAQKDLDIEKICGENHEGFINSVTAFLGLKGENLDLKQDVINL
NYELQEIGRKYVTKAEELFAYKQIKDNIKRTKEVLNNCQYAILLGMKVDEYVQQKKYYQA
IKNMDQLHNVYLKKLSDFQFARNMDYNIPVXX
Translated Amino Acid sequence (All Frames) 
Frame A:
rsw*ktryl*fkfsr*iiiitsfltr*ssetidnre*nl*freffncsiryrsfrtsn*i
si*k**rkrshkdieciyrskrfry*kdlw*ks*rfh*fsncipwfkr*efrfktrcnqf
kl*tsrdw*kicyksrgiicl*tnqr*ykenkrsfkqlsichtfryesr*icttkeilss
h*khgsit*rlfkeiigfsickkygl*ytsxxx


Frame B:
EVGEKQGIYSLSSQDRSSSLPHSSQDDQAKPLITESEIFSSESFLIAVSDTDHLGPAIKS
VFENNKEKEVIKILNAYIAQKDLDIEKICGENHEGFINSVTAFLGLKGENLDLKQDVINL
NYELQEIGRKYVTKAEELFAYKQIKDNIKRTKEVLNNCQYAILLGMKVDEYVQQKKYYQA
IKNMDQLHNVYLKKLSDFQFARNMDYNIPVXX


Frame C:
klvknkvsiv*vlkidhhhyliphkmikrnh**qrvkslvqrvf*lqyqipii*dqqlnq
ylkiikkkks*ry*mhislkki*ilkrfvvkimkvsliq*lhslv*kvri*i*nkm*si*
imnfkrlvenmlqkqrnyllinkskii*reqkkf*tivnmpyf*v*ksmnmynkrntikp
lktwinyitfi*rnyrifnlqeiwiiiyqxxx
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U14115-1 (Contig-U14115-1Q)
/CSM_Contig/Contig-U14115-1Q.Seq.d
         (639 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U14115-1 (Contig-U14115-1Q) /CSM_Contig/Conti...  1249  0.0
Contig-U13568-1 (Contig-U13568-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U11242-1 (Contig-U11242-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U00977-1 (Contig-U00977-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U00078-1 (Contig-U00078-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U12401-1 (Contig-U12401-1Q) /CSM_Contig/Conti...    36  0.045
Contig-U12328-1 (Contig-U12328-1Q) /CSM_Contig/Conti...    36  0.045
Contig-U11929-1 (Contig-U11929-1Q) /CSM_Contig/Conti...    36  0.045
Contig-U11780-1 (Contig-U11780-1Q) /CSM_Contig/Conti...    36  0.045
Contig-U11206-1 (Contig-U11206-1Q) /CSM_Contig/Conti...    36  0.045

>Contig-U14115-1 (Contig-U14115-1Q) /CSM_Contig/Contig-U14115-1Q.Seq.d
          Length = 639

 Score = 1249 bits (630), Expect = 0.0
 Identities = 630/630 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaagttggtgaaaaacaaggtatctatagtttaagttctcaagatagatcatcatcatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   agaagttggtgaaaaacaaggtatctatagtttaagttctcaagatagatcatcatcatt 60

                                                                       
Query: 61  acctcattcctcacaagatgatcaagcgaaaccattgataacagagagtgaaatctttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  acctcattcctcacaagatgatcaagcgaaaccattgataacagagagtgaaatctttag 120

                                                                       
Query: 121 ttcagagagttttttaattgcagtatcagataccgatcatttaggaccagcaattaaatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttcagagagttttttaattgcagtatcagataccgatcatttaggaccagcaattaaatc 180

                                                                       
Query: 181 agtatttgaaaataataaagaaaaagaagtcataaagatattgaatgcatatatcgctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agtatttgaaaataataaagaaaaagaagtcataaagatattgaatgcatatatcgctca 240

                                                                       
Query: 241 aaaagatttagatattgaaaagatttgtggtgaaaatcatgaaggtttcattaattcagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaaagatttagatattgaaaagatttgtggtgaaaatcatgaaggtttcattaattcagt 300

                                                                       
Query: 301 aactgcattccttggtttaaaaggtgagaatttagatttaaaacaagatgtaatcaattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aactgcattccttggtttaaaaggtgagaatttagatttaaaacaagatgtaatcaattt 360

                                                                       
Query: 361 aaattatgaacttcaagagattggtagaaaatatgttacaaaagcagaggaattatttgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaattatgaacttcaagagattggtagaaaatatgttacaaaagcagaggaattatttgc 420

                                                                       
Query: 421 ttataaacaaatcaaagataatataaagagaacaaaagaagttttaaacaattgtcaata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ttataaacaaatcaaagataatataaagagaacaaaagaagttttaaacaattgtcaata 480

                                                                       
Query: 481 tgccatacttttaggtatgaaagtcgatgaatatgtacaacaaaagaaatactatcaagc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tgccatacttttaggtatgaaagtcgatgaatatgtacaacaaaagaaatactatcaagc 540

                                                                       
Query: 541 cattaaaaacatggatcaattacataacgtttatttaaagaaattatcggattttcaatt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cattaaaaacatggatcaattacataacgtttatttaaagaaattatcggattttcaatt 600

                                         
Query: 601 tgcaagaaatatggattataatataccagt 630
           ||||||||||||||||||||||||||||||
Sbjct: 601 tgcaagaaatatggattataatataccagt 630


>Contig-U13568-1 (Contig-U13568-1Q) /CSM_Contig/Contig-U13568-1Q.Seq.d
          Length = 751

 Score = 38.2 bits (19), Expect = 0.011
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                          
Query: 175 taaatcagtatttgaaaataataaagaaaaa 205
           ||||| ||| ||| |||||||||||||||||
Sbjct: 668 taaattagtttttaaaaataataaagaaaaa 698


>Contig-U11242-1 (Contig-U11242-1Q) /CSM_Contig/Contig-U11242-1Q.Seq.d
          Length = 1925

 Score = 38.2 bits (19), Expect = 0.011
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 188 gaaaataataaagaaaaag 206
           |||||||||||||||||||
Sbjct: 898 gaaaataataaagaaaaag 916


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,314
Number of Sequences: 6905
Number of extensions: 13314
Number of successful extensions: 1555
Number of sequences better than 10.0: 186
length of query: 639
length of database: 5,674,871
effective HSP length: 16
effective length of query: 623
effective length of database: 5,564,391
effective search space: 3466615593
effective search space used: 3466615593
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.18
Homology vs DNA 
Query= Contig-U14115-1 (Contig-U14115-1Q) /CSM_Contig/Contig-U14115-1Q.Seq.d
         (639 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ336539) Dictyostelium discoideum cDNA clone:dda54d08, 5' ...  1249   0.0    1
(ER517187) 1093015525081 Global-Ocean-Sampling_GS-35-01-01-1...    48   0.065  2
(EU489821) Francisella philomiragia subsp. philomiragia stra...    44   0.085  3
(AC223789) Bos taurus clone CH240-458A20, WORKING DRAFT SEQU...    50   0.098  1
(DU010302) 242645 Tomato MboI BAC Library Solanum lycopersic...    50   0.098  1
(DC227501) Plasmodium berghei strain ANKA cDNA clone:SG00915...    50   0.098  1
(DC226643) Plasmodium berghei strain ANKA cDNA clone:SG00653...    50   0.098  1
(AC018625) Homo sapiens chromosome 8 clone RP11-642O14 map 8...    48   0.15   2
(CR936375) Zebrafish DNA sequence from clone CH211-122B16 in...    42   0.19   4
(AM180355) Clostridium difficile 630 complete genome.              34   0.22   23
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255...    34   0.25   15
(CU062404) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   0.34   5
(AC158678) Mus musculus 6 BAC RP23-142I6 (Roswell Park Cance...    48   0.39   1
(AC153867) Mus musculus 6 BAC RP23-400K22 (Roswell Park Canc...    48   0.39   1
(AC153630) Mus musculus 6 BAC RP23-289O16 (Roswell Park Canc...    48   0.39   1
(AP010810) Solanum lycopersicum DNA, chromosome 8, clone: C0...    48   0.39   1
(AL354661) Human DNA sequence from clone RP11-386D8 on chrom...    48   0.39   1
(AC074000) Homo sapiens BAC clone CTD-2023N18 from 7, comple...    48   0.39   1
(AC126359) Homo sapiens chromosome 15 clone RP11-112K3 map 1...    48   0.39   1
(CU627991) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.39   1
(AC073126) Homo sapiens chromosome 7 clone RP11-636N5, WORKI...    48   0.39   1
(AC190251) Pan troglodytes chromosome 14 clone CH251-256J9, ...    48   0.39   1
(AC018627) Homo sapiens chromosome 4 clone RP11-757J18 map 4...    48   0.39   1
(CZ939585) 321059 Tomato EcoRI BAC Library Solanum lycopersi...    48   0.39   1
(CR077414) Reverse strand read from insert in 3'HPRT inserti...    48   0.39   1
(CR021793) Reverse strand read from insert in 3'HPRT inserti...    48   0.39   1
(EU492905) Francisella piscicida strain GM2212 16S ribosomal...    44   0.45   2
(AC096615) Rattus norvegicus clone CH230-84O16, WORKING DRAF...    40   0.49   5
(CT033763) Medicago truncatula chromosome 5 clone mth2-139a2...    40   0.67   5
(CS746829) Sequence 14825 from Patent WO2005083127.                36   0.81   2
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         36   0.90   15
(AC165335) Mus musculus BAC clone RP24-481H19 from chromosom...    40   0.96   5
(ED148914) AUAC-aad44a09.b1 Ascaris suum whole genome shotgu...    34   1.1    2
(AL445563) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    32   1.1    10
(AC151364) Macaca mulatta clone CH250-142M15, complete seque...    36   1.4    6
(AY126994) Arabidopsis thaliana At1g65470/F5I14_33 mRNA, com...    46   1.5    1
(AM426638) Vitis vinifera contig VV78X138333.5, whole genome...    46   1.5    1
(AC001229) Sequence of BAC F5I14 from Arabidopsis thaliana c...    46   1.5    1
(AB027229) Arabidopsis thaliana gene for FAS1, partial cds, ...    46   1.5    1
(CQ887923) Sequence 1 from Patent WO2004085644.                    46   1.5    1
(AC201213) Strongylocentrotus purpuratus clone R3-15E1, WORK...    46   1.5    1
(FH606032) CHO_OF4630xd10r1.ab1 CHO_OF4 Nicotiana tabacum ge...    46   1.5    1
(FH169364) CHO_OF3382xa07r1.ab1 CHO_OF3 Nicotiana tabacum ge...    46   1.5    1
(EJ015643) 1095433016297 Global-Ocean-Sampling_GS-26-01-01-1...    46   1.5    1
(EB224675) PEG002-C-106203-501 Normalized Pedal-Pleural Gang...    46   1.5    1
(DT803889) 127426328 TL1 Tribolium castaneum cDNA clone 109K...    46   1.5    1
(CX700221) 87062.1 Stolon Solanum tuberosum cDNA clone 87062...    46   1.5    1
(AM054649) Isotricha prostoma EST, clone Ip02_C04.                 46   1.5    1
(AE014829) Plasmodium falciparum 3D7 chromosome 10 section 1...    36   1.6    5
(AC128662) Mus musculus BAC clone RP24-440E3 from chromosome...    42   1.7    2
(CR936922) Zebrafish DNA sequence from clone ZFOS-1202H3 in ...    42   2.1    3
(EJ302590) 1095390044533 Global-Ocean-Sampling_GS-27-01-01-1...    38   2.5    2
(CU467560) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   2.6    4
(AC174753) Bos taurus clone CH240-85C18, WORKING DRAFT SEQUE...    36   2.7    6
(AC005506) Plasmodium falciparum chromosome 12 clone 3D7, **...    36   2.7    5
(AR659699) Sequence 740 from patent US 6900016.                    34   2.7    5
(AR659649) Sequence 690 from patent US 6900016.                    34   2.9    5
(AC013569) Homo sapiens clone RP11-1C17, WORKING DRAFT SEQUE...    40   2.9    4
(AC220494) Bos taurus clone CH240-356K18, WORKING DRAFT SEQU...    34   3.1    6
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi...    34   3.3    11
(DU854532) 54609 Tomato HindIII BAC Library Solanum lycopers...    40   3.6    2
(AM632753) Entamoeba dispar GSS, clone dispar94c08.q1k.            36   3.6    2
(CK272689) EST718767 potato abiotic stress cDNA library Sola...    38   3.6    2
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    34   3.8    21
(CK268993) EST715071 potato abiotic stress cDNA library Sola...    38   3.9    2
(ET930201) CHO_OF245xo01r1.ab1 CHO_OF Nicotiana tabacum geno...    34   4.0    2
(AC202477) Medicago truncatula clone mth2-161a15, WORKING DR...    40   4.1    5
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    34   4.2    9
(EJ297312) 1095388052038 Global-Ocean-Sampling_GS-27-01-01-1...    32   4.3    3
(AC117497) Homo sapiens 12 BAC RP11-422O21 (Roswell Park Can...    44   4.3    2
(BZ553679) pacs1-60_4263.x1 pacs1-60 Pseudomonas aeruginosa ...    36   4.3    2
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet...    42   4.5    14
(AC213173) Equus caballus clone CH241-458J12, WORKING DRAFT ...    40   4.6    5
(AC138410) Homo sapiens chromosome 5 clone RP11-1124O10, com...    44   4.7    3
(AC110538) Mus musculus chromosome 5, clone RP23-71L23, comp...    40   4.8    6
(AC210516) Populus trichocarpa clone POP119-J20, complete se...    34   4.9    4
(AC160551) Mus musculus chromosome 5, clone RP23-296C20, com...    40   4.9    5
(AY863213) Smittium culisetae mitochondrion, complete genome.      34   5.0    5
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...    32   5.3    9
(EJ144100) 1092343678140 Global-Ocean-Sampling_GS-27-01-01-1...    32   5.4    3
(CP000825) Prochlorococcus marinus str. MIT 9215, complete g...    36   5.5    14
(BX470110) Mouse DNA sequence from clone RP23-374D8 on chrom...    44   6.1    1
(AC167168) Mus musculus chromosome 1, clone RP23-100P14, com...    44   6.1    1
(AC167126) Mus musculus chromosome 1, clone RP24-104I19, com...    44   6.1    1
(AC164537) Mus musculus chromosome 7, clone RP23-68N11, comp...    44   6.1    1
(AC153953) Mus musculus 10 BAC RP24-394B11 (Roswell Park Can...    44   6.1    1
(AC122822) Mus musculus BAC clone RP23-202A13 from 9, comple...    44   6.1    1
(AC122225) Mus musculus BAC clone RP23-131E21 from 9, comple...    44   6.1    1
(CT868696) M.truncatula DNA sequence from clone MTH2-66E17 o...    44   6.1    1
(AP009789) Lotus japonicus genomic DNA, chromosome 6, clone:...    44   6.1    1
(AM487591) Vitis vinifera contig VV78X091344.6, whole genome...    44   6.1    1
(AM481892) Vitis vinifera contig VV78X060648.8, whole genome...    44   6.1    1
(AM479594) Vitis vinifera contig VV78X121056.4, whole genome...    44   6.1    1
(AM478368) Vitis vinifera contig VV78X002309.7, whole genome...    44   6.1    1
(AM478068) Vitis vinifera contig VV78X183017.13, whole genom...    44   6.1    1
(AM473183) Vitis vinifera contig VV78X188472.7, whole genome...    44   6.1    1
(AM468295) Vitis vinifera contig VV78X195574.8, whole genome...    44   6.1    1
(AM467528) Vitis vinifera contig VV78X143034.9, whole genome...    44   6.1    1
(AM467204) Vitis vinifera contig VV78X027473.10, whole genom...    44   6.1    1
(AM464698) Vitis vinifera contig VV78X153564.4, whole genome...    44   6.1    1

>(BJ336539) Dictyostelium discoideum cDNA clone:dda54d08, 5' end,
           single read.
          Length = 630

 Score = 1249 bits (630), Expect = 0.0
 Identities = 630/630 (100%)
 Strand = Plus / Plus


Query: 1   agaagttggtgaaaaacaaggtatctatagtttaagttctcaagatagatcatcatcatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   agaagttggtgaaaaacaaggtatctatagtttaagttctcaagatagatcatcatcatt 60


Query: 61  acctcattcctcacaagatgatcaagcgaaaccattgataacagagagtgaaatctttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  acctcattcctcacaagatgatcaagcgaaaccattgataacagagagtgaaatctttag 120


Query: 121 ttcagagagttttttaattgcagtatcagataccgatcatttaggaccagcaattaaatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttcagagagttttttaattgcagtatcagataccgatcatttaggaccagcaattaaatc 180


Query: 181 agtatttgaaaataataaagaaaaagaagtcataaagatattgaatgcatatatcgctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agtatttgaaaataataaagaaaaagaagtcataaagatattgaatgcatatatcgctca 240


Query: 241 aaaagatttagatattgaaaagatttgtggtgaaaatcatgaaggtttcattaattcagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaaagatttagatattgaaaagatttgtggtgaaaatcatgaaggtttcattaattcagt 300


Query: 301 aactgcattccttggtttaaaaggtgagaatttagatttaaaacaagatgtaatcaattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aactgcattccttggtttaaaaggtgagaatttagatttaaaacaagatgtaatcaattt 360


Query: 361 aaattatgaacttcaagagattggtagaaaatatgttacaaaagcagaggaattatttgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaattatgaacttcaagagattggtagaaaatatgttacaaaagcagaggaattatttgc 420


Query: 421 ttataaacaaatcaaagataatataaagagaacaaaagaagttttaaacaattgtcaata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ttataaacaaatcaaagataatataaagagaacaaaagaagttttaaacaattgtcaata 480


Query: 481 tgccatacttttaggtatgaaagtcgatgaatatgtacaacaaaagaaatactatcaagc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tgccatacttttaggtatgaaagtcgatgaatatgtacaacaaaagaaatactatcaagc 540


Query: 541 cattaaaaacatggatcaattacataacgtttatttaaagaaattatcggattttcaatt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cattaaaaacatggatcaattacataacgtttatttaaagaaattatcggattttcaatt 600


Query: 601 tgcaagaaatatggattataatataccagt 630
           ||||||||||||||||||||||||||||||
Sbjct: 601 tgcaagaaatatggattataatataccagt 630

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 889,542,467
Number of extensions: 57105662
Number of successful extensions: 4840762
Number of sequences better than 10.0: 209
Length of query: 639
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 616
Effective length of database: 93,106,754,628
Effective search space: 57353760850848
Effective search space used: 57353760850848
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.10
Homology vs Protein 
Query= Contig-U14115-1 (Contig-U14115-1Q) /CSM_Contig/Contig-U14115-1Q.Seq.d
         (639 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54B27) RecName: Full=Exocyst complex component 6; AltName: Ful...   341   1e-92
(Q8TAG9) RecName: Full=Exocyst complex component 6; AltName: Ful...    99   1e-19
BC028395_1(BC028395|pid:none) Homo sapiens exocyst complex compo...    99   1e-19
EU832839_1(EU832839|pid:none) Synthetic construct Homo sapiens c...    99   1e-19
BC104527_1(BC104527|pid:none) Bos taurus exocyst complex compone...    98   2e-19
BC068986_1(BC068986|pid:none) Danio rerio exocyst complex compon...    98   2e-19
(O54923) RecName: Full=Exocyst complex component 6; AltName: Ful...    98   2e-19
AF032668_1(AF032668|pid:none) Rattus norvegicus rsec15 mRNA, com...    98   2e-19
(Q9Y2D4) RecName: Full=Exocyst complex component 6B; AltName: Fu...    97   5e-19
BC160001_1(BC160001|pid:none) Synthetic construct Homo sapiens c...    97   5e-19
BC144781_1(BC144781|pid:none) Mus musculus exocyst complex compo...    97   5e-19
(Q8R313) RecName: Full=Exocyst complex component 6; AltName: Ful...    96   9e-19
BC124398_1(BC124398|pid:none) Danio rerio zgc:153610, mRNA (cDNA...    95   2e-18
AJ720629_1(AJ720629|pid:none) Gallus gallus mRNA for hypothetica...    92   1e-17
AK128190_1(AK128190|pid:none) Homo sapiens cDNA FLJ46316 fis, cl...    91   3e-17
AK293857_1(AK293857|pid:none) Homo sapiens cDNA FLJ55550 complet...    91   3e-17
AK300285_1(AK300285|pid:none) Homo sapiens cDNA FLJ56022 complet...    91   3e-17
AM270328_1(AM270328|pid:none) Aspergillus niger contig An15c0010...    86   9e-16
(Q9LXX6) RecName: Full=Probable exocyst complex component 6; Alt...    85   2e-15
AE017341_245(AE017341|pid:none) Cryptococcus neoformans var. neo...    81   2e-14
FM992691_377(FM992691|pid:none) Candida dubliniensis CD36 chromo...    78   2e-13
FN392320_311(FN392320|pid:none) Pichia pastoris GS115 chromosome...    76   9e-13
CR382139_713(CR382139|pid:none) Debaryomyces hansenii strain CBS...    71   2e-11
AL392103_3(AL392103|pid:none) Human DNA sequence from clone RP11...    67   3e-10
AK070924_1(AK070924|pid:none) Oryza sativa Japonica Group cDNA c...    67   6e-10
AY810104_1(AY810104|pid:none) Schistosoma japonicum SJCHGC07595 ...    60   7e-08
CU633900_281(CU633900|pid:none) Podospora anserina genomic DNA c...    59   2e-07
T15689(T15689)hypothetical protein C28G1.3 - Caenorhabditis eleg...    54   3e-06
AM910996_628(AM910996|pid:none) Plasmodium knowlesi strain H chr...    43   0.009
AL031745_22(AL031745|pid:none) Plasmodium falciparum DNA from MA...    42   0.011
CR380954_342(CR380954|pid:none) Candida glabrata strain CBS138 c...    41   0.033
AL844509_127(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    39   0.13
CP001056_2790(CP001056|pid:none) Clostridium botulinum B str. Ek...    37   0.48
AP003258_12(AP003258|pid:none) Oryza sativa Japonica Group genom...    37   0.48
CP001448_40(CP001448|pid:none) Borrelia burgdorferi WI91-23 plas...    37   0.48
AE014185_225(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    37   0.63
CP001279_257(CP001279|pid:none) Nautilia profundicola AmH, compl...    36   0.82
CT030003_13(CT030003|pid:none) Integrative Conjugative Element M...    36   0.82
AY509253_69(AY509253|pid:none) Ostreid herpesvirus 1, complete g...    36   0.82
(Q39659) RecName: Full=Glyoxysomal fatty acid beta-oxidation mul...    36   1.1
X79365_1(X79365|pid:none) C.sativus MFP-b mRNA.                        36   1.1
CP001634_1807(CP001634|pid:none) Kosmotoga olearia TBF 19.5.1, c...    36   1.1
CP000743_151(CP000743|pid:none) Methanococcus aeolicus Nankai-3,...    35   1.4
CP001230_959(CP001230|pid:none) Persephonella marina EX-H1, comp...    35   1.4
CP000141_1563(CP000141|pid:none) Carboxydothermus hydrogenoforma...    35   1.4
EF173373_1(EF173373|pid:none) Aedes aegypti clone BAC ND41B18, c...    35   1.8
CP000123_39(CP000123|pid:none) Mycoplasma capricolum subsp. capr...    35   1.8
AL844509_177(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    35   1.8
FN392322_103(FN392322|pid:none) Pichia pastoris GS115 chromosome...    35   1.8
CP001185_814(CP001185|pid:none) Thermosipho africanus TCF52B, co...    35   1.8
(P0C081) RecName: Full=Leukotoxin;          Short=Lkt;  &(P0C082...    35   1.8
AE016819_484(AE016819|pid:none) Ashbya gossypii (= Eremothecium ...    35   1.8
CP001098_399(CP001098|pid:none) Halothermothrix orenii H 168, co...    35   1.8
AL844506_103(AL844506|pid:none) Plasmodium falciparum 3D7 chromo...    35   2.4
AL110484_3(AL110484|pid:none) Caenorhabditis elegans YAC Y38E10A...    35   2.4
BX538353_1(BX538353|pid:none) Cryptosporidium parvum chromosome ...    35   2.4
U94410_1(U94410|pid:none) Dictyostelium discoideum plasmid Ddp6 ...    35   2.4
EU545552_3(EU545552|pid:none) Clostridium perfringens chromosoma...    35   2.4
CP000312_328(CP000312|pid:none) Clostridium perfringens SM101, c...    35   2.4
AB206333_63(AB206333|pid:none) Enterococcus faecium plasmid pMG1...    34   3.1
AC117075_22(AC117075|pid:none) Dictyostelium discoideum chromoso...    34   3.1
AJ786369_3(AJ786369|pid:none) Borrelia garinii lp54 plasmid, iso...    34   3.1
AE015927_2099(AE015927|pid:none) Clostridium tetani E88, complet...    34   4.1
AY233334_1(AY233334|pid:none) Spiroplasma kunkelii clone 1 putat...    34   4.1
(Q58651) RecName: Full=Uncharacterized protein MJ1254;  &E64456(...    33   5.3
CP000962_3485(CP000962|pid:none) Clostridium botulinum A3 str. L...    33   5.3
AJ278826_6(AJ278826|pid:none) Plasmodium berghei OMPDC gene, ORF...    33   5.3
(Q58718) RecName: Full=DNA double-strand break repair rad50 ATPa...    33   5.3
AM406671_1228(AM406671|pid:none) Lactococcus lactis subsp. cremo...    33   5.3
CP000609_1673(CP000609|pid:none) Methanococcus maripaludis C5, c...    33   5.3
AE001272_5(AE001272|pid:none) Lactococcus lactis DPC3147 plasmid...    33   5.3
AE017226_652(AE017226|pid:none) Treponema denticola ATCC 35405, ...    33   5.3
AB015484_1(AB015484|pid:none) Dugesia japonica mRNA for myosin h...    33   5.3
CP000123_182(CP000123|pid:none) Mycoplasma capricolum subsp. cap...    33   5.3
CP000606_215(CP000606|pid:none) Shewanella loihica PV-4, complet...    33   5.3
CP000792_947(CP000792|pid:none) Campylobacter concisus 13826, co...    33   5.3
AL034559_4(AL034559|pid:none) Plasmodium falciparum MAL3P7, comp...    33   5.3
AL844505_260(AL844505|pid:none) Plasmodium falciparum 3D7 chromo...    33   5.3
CP000685_1148(CP000685|pid:none) Flavobacterium johnsoniae UW101...    33   7.0
AE014187_146(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    33   7.0
AL031746_4(AL031746|pid:none) Plasmodium falciparum DNA from MAL...    33   7.0
CP000976_75(CP000976|pid:none) Borrelia duttonii Ly, complete ge...    33   7.0
CP001068_3615(CP001068|pid:none) Ralstonia pickettii 12J chromos...    33   7.0
CU861906_123(CU861906|pid:none) Ralstonia solanacearum strain Mo...    33   7.0
AE014187_32(AE014187|pid:none) Plasmodium falciparum 3D7 chromos...    33   7.0
AM910991_365(AM910991|pid:none) Plasmodium knowlesi strain H chr...    33   7.0
CP000867_1567(CP000867|pid:none) Methanococcus maripaludis C6, c...    33   9.1
CP000560_2329(CP000560|pid:none) Bacillus amyloliquefaciens FZB4...    33   9.1
AY138501_1(AY138501|pid:none) Plasmodium falciparum normocyte bi...    33   9.1
(Q97EH9) RecName: Full=50S ribosomal protein L4;  &AE001437_3084...    33   9.1
AY138503_1(AY138503|pid:none) Plasmodium falciparum normocyte bi...    33   9.1
AY138502_1(AY138502|pid:none) Plasmodium falciparum normocyte bi...    33   9.1
AF312917_1(AF312917|pid:none) Plasmodium falciparum reticulocyte...    33   9.1
CP000828_72(CP000828|pid:none) Acaryochloris marina MBIC11017, c...    33   9.1
(Q8IDX6) RecName: Full=Reticulocyte-binding protein 2 homolog a;...    33   9.1
(A8EZT5) RecName: Full=DNA ligase;          EC=6.5.1.2; AltName:...    33   9.1
CP001393_480(CP001393|pid:none) Anaerocellum thermophilum DSM 67...    33   9.1
CP000962_125(CP000962|pid:none) Clostridium botulinum A3 str. Lo...    33   9.1
AY138499_1(AY138499|pid:none) Plasmodium falciparum normocyte bi...    33   9.1
AF312916_1(AF312916|pid:none) Plasmodium falciparum reticulocyte...    33   9.1

>(Q54B27) RecName: Full=Exocyst complex component 6; AltName:
           Full=Exocyst complex component Sec15;
          Length = 1025

 Score =  341 bits (874), Expect = 1e-92
 Identities = 176/210 (83%), Positives = 176/210 (83%)
 Frame = +2

Query: 2   EVGEKQGIYXXXXXXXXXXXXXXXXXXXAKPXXXXXXXXXXXXXXXAVSDTDHLGPAIKS 181
           EVGEKQGIY                   AKP               AVSDTDHLGPAIKS
Sbjct: 125 EVGEKQGIYSLSSQDRSSSLPHSSQDDQAKPLITESEIFSSESFLIAVSDTDHLGPAIKS 184

Query: 182 VFENNKEKEVIKILNAYIAQKDLDIEKICGENHEGFINSVTAFLGLKGENLDLKQDVINL 361
           VFENNKEKEVIKILNAYIAQKDLDIEKICGENHEGFINSVTAFLGLKGENLDLKQDVINL
Sbjct: 185 VFENNKEKEVIKILNAYIAQKDLDIEKICGENHEGFINSVTAFLGLKGENLDLKQDVINL 244

Query: 362 NYELQEIGRKYVTKAEELFAYKQIKDNIKRTKEVLNNCQYAILLGMKVDEYVQQKKYYQA 541
           NYELQEIGRKYVTKAEELFAYKQIKDNIKRTKEVLNNCQYAILLGMKVDEYVQQKKYYQA
Sbjct: 245 NYELQEIGRKYVTKAEELFAYKQIKDNIKRTKEVLNNCQYAILLGMKVDEYVQQKKYYQA 304

Query: 542 IKNMDQLHNVYLKKLSDFQFARNMDYNIPV 631
           IKNMDQLHNVYLKKLSDFQFARNMDYNIPV
Sbjct: 305 IKNMDQLHNVYLKKLSDFQFARNMDYNIPV 334

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 907,215,858
Number of extensions: 17279105
Number of successful extensions: 40133
Number of sequences better than 10.0: 100
Number of HSP's gapped: 40084
Number of HSP's successfully gapped: 100
Length of query: 213
Length of database: 1,051,180,864
Length adjustment: 123
Effective length of query: 90
Effective length of database: 653,084,107
Effective search space: 58777569630
Effective search space used: 58777569630
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.75  gvh: 0.44  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 16.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U14115-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0