Contig-U14115-1 |
Contig ID |
Contig-U14115-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
no gap |
Contig length |
639 |
Chromosome number (1..6, M) |
6 |
Chromosome length |
3595308 |
Start point |
3506333 |
End point |
3505704 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
1 |
Number of EST |
1 |
Link to clone list |
U14115 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.12.18 |
Homology vs DNA |
Query= Contig-U14115-1 (Contig-U14115-1Q) /CSM_Contig/Contig-U14115-1Q.Seq.d (639 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ336539) Dictyostelium discoideum cDNA clone:dda54d08, 5' ... 1249 0.0 1 (ER517187) 1093015525081 Global-Ocean-Sampling_GS-35-01-01-1... 48 0.065 2 (EU489821) Francisella philomiragia subsp. philomiragia stra... 44 0.085 3 (AC223789) Bos taurus clone CH240-458A20, WORKING DRAFT SEQU... 50 0.098 1 (DU010302) 242645 Tomato MboI BAC Library Solanum lycopersic... 50 0.098 1 (DC227501) Plasmodium berghei strain ANKA cDNA clone:SG00915... 50 0.098 1 (DC226643) Plasmodium berghei strain ANKA cDNA clone:SG00653... 50 0.098 1 (AC018625) Homo sapiens chromosome 8 clone RP11-642O14 map 8... 48 0.15 2 (CR936375) Zebrafish DNA sequence from clone CH211-122B16 in... 42 0.19 4 (AM180355) Clostridium difficile 630 complete genome. 34 0.22 23 (AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 34 0.25 15 (CU062404) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 0.34 5 (AC158678) Mus musculus 6 BAC RP23-142I6 (Roswell Park Cance... 48 0.39 1 (AC153867) Mus musculus 6 BAC RP23-400K22 (Roswell Park Canc... 48 0.39 1 (AC153630) Mus musculus 6 BAC RP23-289O16 (Roswell Park Canc... 48 0.39 1 (AP010810) Solanum lycopersicum DNA, chromosome 8, clone: C0... 48 0.39 1 (AL354661) Human DNA sequence from clone RP11-386D8 on chrom... 48 0.39 1 (AC074000) Homo sapiens BAC clone CTD-2023N18 from 7, comple... 48 0.39 1 (AC126359) Homo sapiens chromosome 15 clone RP11-112K3 map 1... 48 0.39 1 (CU627991) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.39 1 (AC073126) Homo sapiens chromosome 7 clone RP11-636N5, WORKI... 48 0.39 1 (AC190251) Pan troglodytes chromosome 14 clone CH251-256J9, ... 48 0.39 1 (AC018627) Homo sapiens chromosome 4 clone RP11-757J18 map 4... 48 0.39 1 (CZ939585) 321059 Tomato EcoRI BAC Library Solanum lycopersi... 48 0.39 1 (CR077414) Reverse strand read from insert in 3'HPRT inserti... 48 0.39 1 (CR021793) Reverse strand read from insert in 3'HPRT inserti... 48 0.39 1 (EU492905) Francisella piscicida strain GM2212 16S ribosomal... 44 0.45 2 (AC096615) Rattus norvegicus clone CH230-84O16, WORKING DRAF... 40 0.49 5 (CT033763) Medicago truncatula chromosome 5 clone mth2-139a2... 40 0.67 5 (CS746829) Sequence 14825 from Patent WO2005083127. 36 0.81 2 (BA000026) Mycoplasma penetrans HF-2 DNA, complete genome. 36 0.90 15 (AC165335) Mus musculus BAC clone RP24-481H19 from chromosom... 40 0.96 5 (ED148914) AUAC-aad44a09.b1 Ascaris suum whole genome shotgu... 34 1.1 2 (AL445563) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 32 1.1 10 (AC151364) Macaca mulatta clone CH250-142M15, complete seque... 36 1.4 6 (AY126994) Arabidopsis thaliana At1g65470/F5I14_33 mRNA, com... 46 1.5 1 (AM426638) Vitis vinifera contig VV78X138333.5, whole genome... 46 1.5 1 (AC001229) Sequence of BAC F5I14 from Arabidopsis thaliana c... 46 1.5 1 (AB027229) Arabidopsis thaliana gene for FAS1, partial cds, ... 46 1.5 1 (CQ887923) Sequence 1 from Patent WO2004085644. 46 1.5 1 (AC201213) Strongylocentrotus purpuratus clone R3-15E1, WORK... 46 1.5 1 (FH606032) CHO_OF4630xd10r1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 1.5 1 (FH169364) CHO_OF3382xa07r1.ab1 CHO_OF3 Nicotiana tabacum ge... 46 1.5 1 (EJ015643) 1095433016297 Global-Ocean-Sampling_GS-26-01-01-1... 46 1.5 1 (EB224675) PEG002-C-106203-501 Normalized Pedal-Pleural Gang... 46 1.5 1 (DT803889) 127426328 TL1 Tribolium castaneum cDNA clone 109K... 46 1.5 1 (CX700221) 87062.1 Stolon Solanum tuberosum cDNA clone 87062... 46 1.5 1 (AM054649) Isotricha prostoma EST, clone Ip02_C04. 46 1.5 1 (AE014829) Plasmodium falciparum 3D7 chromosome 10 section 1... 36 1.6 5 (AC128662) Mus musculus BAC clone RP24-440E3 from chromosome... 42 1.7 2 (CR936922) Zebrafish DNA sequence from clone ZFOS-1202H3 in ... 42 2.1 3 (EJ302590) 1095390044533 Global-Ocean-Sampling_GS-27-01-01-1... 38 2.5 2 (CU467560) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 2.6 4 (AC174753) Bos taurus clone CH240-85C18, WORKING DRAFT SEQUE... 36 2.7 6 (AC005506) Plasmodium falciparum chromosome 12 clone 3D7, **... 36 2.7 5 (AR659699) Sequence 740 from patent US 6900016. 34 2.7 5 (AR659649) Sequence 690 from patent US 6900016. 34 2.9 5 (AC013569) Homo sapiens clone RP11-1C17, WORKING DRAFT SEQUE... 40 2.9 4 (AC220494) Bos taurus clone CH240-356K18, WORKING DRAFT SEQU... 34 3.1 6 (BA000021) Wigglesworthia glossinidia endosymbiont of Glossi... 34 3.3 11 (DU854532) 54609 Tomato HindIII BAC Library Solanum lycopers... 40 3.6 2 (AM632753) Entamoeba dispar GSS, clone dispar94c08.q1k. 36 3.6 2 (CK272689) EST718767 potato abiotic stress cDNA library Sola... 38 3.6 2 (CP001056) Clostridium botulinum B str. Eklund 17B, complete... 34 3.8 21 (CK268993) EST715071 potato abiotic stress cDNA library Sola... 38 3.9 2 (ET930201) CHO_OF245xo01r1.ab1 CHO_OF Nicotiana tabacum geno... 34 4.0 2 (AC202477) Medicago truncatula clone mth2-161a15, WORKING DR... 40 4.1 5 (AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 34 4.2 9 (EJ297312) 1095388052038 Global-Ocean-Sampling_GS-27-01-01-1... 32 4.3 3 (AC117497) Homo sapiens 12 BAC RP11-422O21 (Roswell Park Can... 44 4.3 2 (BZ553679) pacs1-60_4263.x1 pacs1-60 Pseudomonas aeruginosa ... 36 4.3 2 (CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 42 4.5 14 (AC213173) Equus caballus clone CH241-458J12, WORKING DRAFT ... 40 4.6 5 (AC138410) Homo sapiens chromosome 5 clone RP11-1124O10, com... 44 4.7 3 (AC110538) Mus musculus chromosome 5, clone RP23-71L23, comp... 40 4.8 6 (AC210516) Populus trichocarpa clone POP119-J20, complete se... 34 4.9 4 (AC160551) Mus musculus chromosome 5, clone RP23-296C20, com... 40 4.9 5 (AY863213) Smittium culisetae mitochondrion, complete genome. 34 5.0 5 (AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 32 5.3 9 (EJ144100) 1092343678140 Global-Ocean-Sampling_GS-27-01-01-1... 32 5.4 3 (CP000825) Prochlorococcus marinus str. MIT 9215, complete g... 36 5.5 14 (BX470110) Mouse DNA sequence from clone RP23-374D8 on chrom... 44 6.1 1 (AC167168) Mus musculus chromosome 1, clone RP23-100P14, com... 44 6.1 1 (AC167126) Mus musculus chromosome 1, clone RP24-104I19, com... 44 6.1 1 (AC164537) Mus musculus chromosome 7, clone RP23-68N11, comp... 44 6.1 1 (AC153953) Mus musculus 10 BAC RP24-394B11 (Roswell Park Can... 44 6.1 1 (AC122822) Mus musculus BAC clone RP23-202A13 from 9, comple... 44 6.1 1 (AC122225) Mus musculus BAC clone RP23-131E21 from 9, comple... 44 6.1 1 (CT868696) M.truncatula DNA sequence from clone MTH2-66E17 o... 44 6.1 1 (AP009789) Lotus japonicus genomic DNA, chromosome 6, clone:... 44 6.1 1 (AM487591) Vitis vinifera contig VV78X091344.6, whole genome... 44 6.1 1 (AM481892) Vitis vinifera contig VV78X060648.8, whole genome... 44 6.1 1 (AM479594) Vitis vinifera contig VV78X121056.4, whole genome... 44 6.1 1 (AM478368) Vitis vinifera contig VV78X002309.7, whole genome... 44 6.1 1 (AM478068) Vitis vinifera contig VV78X183017.13, whole genom... 44 6.1 1 (AM473183) Vitis vinifera contig VV78X188472.7, whole genome... 44 6.1 1 (AM468295) Vitis vinifera contig VV78X195574.8, whole genome... 44 6.1 1 (AM467528) Vitis vinifera contig VV78X143034.9, whole genome... 44 6.1 1 (AM467204) Vitis vinifera contig VV78X027473.10, whole genom... 44 6.1 1 (AM464698) Vitis vinifera contig VV78X153564.4, whole genome... 44 6.1 1
>(BJ336539) Dictyostelium discoideum cDNA clone:dda54d08, 5' end, single read. Length = 630
Score = 1249 bits (630), Expect = 0.0 Identities = 630/630 (100%) Strand = Plus / Plus
Query: 1 agaagttggtgaaaaacaaggtatctatagtttaagttctcaagatagatcatcatcatt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 agaagttggtgaaaaacaaggtatctatagtttaagttctcaagatagatcatcatcatt 60
Query: 61 acctcattcctcacaagatgatcaagcgaaaccattgataacagagagtgaaatctttag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 acctcattcctcacaagatgatcaagcgaaaccattgataacagagagtgaaatctttag 120
Query: 121 ttcagagagttttttaattgcagtatcagataccgatcatttaggaccagcaattaaatc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 ttcagagagttttttaattgcagtatcagataccgatcatttaggaccagcaattaaatc 180
Query: 181 agtatttgaaaataataaagaaaaagaagtcataaagatattgaatgcatatatcgctca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 agtatttgaaaataataaagaaaaagaagtcataaagatattgaatgcatatatcgctca 240
Query: 241 aaaagatttagatattgaaaagatttgtggtgaaaatcatgaaggtttcattaattcagt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 aaaagatttagatattgaaaagatttgtggtgaaaatcatgaaggtttcattaattcagt 300
Query: 301 aactgcattccttggtttaaaaggtgagaatttagatttaaaacaagatgtaatcaattt 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 aactgcattccttggtttaaaaggtgagaatttagatttaaaacaagatgtaatcaattt 360
Query: 361 aaattatgaacttcaagagattggtagaaaatatgttacaaaagcagaggaattatttgc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 aaattatgaacttcaagagattggtagaaaatatgttacaaaagcagaggaattatttgc 420
Query: 421 ttataaacaaatcaaagataatataaagagaacaaaagaagttttaaacaattgtcaata 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 ttataaacaaatcaaagataatataaagagaacaaaagaagttttaaacaattgtcaata 480
Query: 481 tgccatacttttaggtatgaaagtcgatgaatatgtacaacaaaagaaatactatcaagc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 tgccatacttttaggtatgaaagtcgatgaatatgtacaacaaaagaaatactatcaagc 540
Query: 541 cattaaaaacatggatcaattacataacgtttatttaaagaaattatcggattttcaatt 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 cattaaaaacatggatcaattacataacgtttatttaaagaaattatcggattttcaatt 600
Query: 601 tgcaagaaatatggattataatataccagt 630 |||||||||||||||||||||||||||||| Sbjct: 601 tgcaagaaatatggattataatataccagt 630
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 889,542,467 Number of extensions: 57105662 Number of successful extensions: 4840762 Number of sequences better than 10.0: 209 Length of query: 639 Length of database: 95,242,211,685 Length adjustment: 23 Effective length of query: 616 Effective length of database: 93,106,754,628 Effective search space: 57353760850848 Effective search space used: 57353760850848 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7.10 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
1 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |