Contig-U14111-1
Contig ID Contig-U14111-1
Contig update 2002.12.18
Contig sequence
>Contig-U14111-1 (Contig-U14111-1Q) /CSM_Contig/Contig-U14111-1Q.Seq.d
CAAGGGATCCCATCCACTGATTTCCTACGTTCAAGAAACATTGCGTCTCT
ATCAGATAGAGTACGATTTGGCAAGTGAATTATTTGGCAACCAATATCAA
TTGATTCTCGACGAAATCATTGACCCTGCCCATGAACTACTCTTGGAAAC
CACTGAACCAATCATTAAAGTAAGAAAAACGCCTGGTGATAAAATCTTCA
GTATTTTCCCATTACTAGATCTATTCGATACTTTTACTAAACTATTACCA
GACTTTATCACTGCAATCAGTTCAAGAGATGGTAAACATATTAGTGAATT
AAAAACTCAAATTAAACATTTACAAGATACTTGTGCCTCTCTATTAGATT
TCTCATTGGATGAAGAAAAAGAAATTTCAAGTTCAAATAGAAAAGAAATC
ATCTCTGATGCAACTGTTGATGAAATCTCTTCAAATATGATCAATTATTT
TAAACGTTTAATTGAATATAAACATTCTGTTGAATTATTATTAAAAGGTC
AAGATAATAATAATAGTAACAGCAATAGTAATGCACCATCATCAACCTCT
TCAAATAGTAAATCTTCATCTTCATCATCATCATCATCATCATCAAATTC
TGCATCTTCAACAATATTACCTACATCATTTATTGGTTTCTTAGAAAAGA
TATTAAAAAATTTAATTAAATATTTACAAGGTAGAGCGAAAAAAGATTTT
CCAACTCAACCTGCAACTGATTTCTTTAAACCACCAATTAAATCTGTAAT
TTTTCAAATTAATAATTATCATTATATTTCAACCTCTTTAAAACAATCTA
AAATCTTATCGAATCAACAATTTGAAAATAATGAATTGGCGAGTGCAAAT
CATATACTACATGAATTTGAAACTTGTTTAGATAATGAAATTAAAGTTTT
AAATTCATTTTGGAAAACTATAGCTGATATTTTAATAACTAATAAATCAA
ATAAAGAAAAAGATGAAGTTAAATCAATAATTAAAAAACATACTAATTTC
TTAAAAACTTTTAATGATTTAAATAAATTGAAATTTGATATACCAGACCA
AGAATTAAAATTGAAATTAAAAACCGAAGCTAAAAATATAATTGGGAGAT
CTTATGATCAATTTAAAGAATTGTGCAGATTAGAAAAAATTCATTTAGAA
AAGAATTTTGTTCCATTTGAGACAACCGATGATATTAATAGAAAACTTGA
TAGAGTTTTTGATTCACAATAAGAAAAACAATAAATTTA

Gap no gap
Contig length 1239
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 2015478
End point 2014238
Strand (PLUS/MINUS) MINUS
Number of clones 8
Number of EST 8
Link to clone list U14111
List of clone(s)

est1=VHK703Z,1,552
est2=AHL281Z,245,889
est3=CHK565Z,378,860
est4=VHK651Z,482,1083
est5=CHN182Z,536,1115
est6=SHJ623Z,567,1119
est7=VHG563Z,642,1110
est8=SLE120Z,766,1241
Translated Amino Acid sequence
KGSHPLISYVQETLRLYQIEYDLASELFGNQYQLILDEIIDPAHELLLETTEPIIKVRKT
PGDKIFSIFPLLDLFDTFTKLLPDFITAISSRDGKHISELKTQIKHLQDTCASLLDFSLD
EEKEISSSNRKEIISDATVDEISSNMINYFKRLIEYKHSVELLLKGQDNNNSNSNSNAPS
STSSNSKSSSSSSSSSSSNSASSTILPTSFIGFLEKILKNLIKYLQGRAKKDFPTQPATD
FFKPPIKSVIFQINNYHYISTSLKQSKILSNQQFENNELASANHILHEFETCLDNEIKVL
NSFWKTIADILITNKSNKEKDEVKSIIKKHTNFLKTFNDLNKLKFDIPDQELKLKLKTEA
KNIIGRSYDQFKELCRLEKIHLEKNFVPFETTDDINRKLDRVFDSQ*ekq*i


Translated Amino Acid sequence (All Frames)
Frame A:
qgipstdflrsrniaslsdrvrfgk*iiwqpisidsrrnh*pcp*ttlgnh*tnh*skkn
aw**nlqyfpitrsiryfy*titrlyhcnqfkrw*ty**iknsn*tftrylclsirflig
*rkrnfkfk*krnhl*cnc**nlfkydqlf*tfn*i*tfc*iiikrsr*****qq**cti
inlfk**ififiiiiiiikfcifnnityiiywflrkdikkfn*iftr*sekrfsnstcn*
fl*ttn*icnfsn**lslyfnlfkti*nliesti*k**igecksytt*i*nlfr**n*sf
kfilenys*yfnn**ik*rkr*s*inn*kty*flknf**fk*iei*ytrprikieiknrs
*kynweil*si*rivqirknsfrkefcsi*dnr*y**kt**sf*ftirktinl


Frame B:
KGSHPLISYVQETLRLYQIEYDLASELFGNQYQLILDEIIDPAHELLLETTEPIIKVRKT
PGDKIFSIFPLLDLFDTFTKLLPDFITAISSRDGKHISELKTQIKHLQDTCASLLDFSLD
EEKEISSSNRKEIISDATVDEISSNMINYFKRLIEYKHSVELLLKGQDNNNSNSNSNAPS
STSSNSKSSSSSSSSSSSNSASSTILPTSFIGFLEKILKNLIKYLQGRAKKDFPTQPATD
FFKPPIKSVIFQINNYHYISTSLKQSKILSNQQFENNELASANHILHEFETCLDNEIKVL
NSFWKTIADILITNKSNKEKDEVKSIIKKHTNFLKTFNDLNKLKFDIPDQELKLKLKTEA
KNIIGRSYDQFKELCRLEKIHLEKNFVPFETTDDINRKLDRVFDSQ*ekq*i


Frame C:
rdpih*fptfkkhcvsir*stiwqvnylatnin*fstksltlpmnyswkplnqslk*ekr
lvikssvfshy*iysilllnyyqtlslqsvqemvnilvn*klklniykilvply*ishwm
kkkkfqvqiekksslmqllmkslqi*siilnv*lninillnyy*kvkiiiivtaivmhhh
qplqivnlhlhhhhhhhqilhlqqyylhhllvs*kry*ki*lniykverkkifqlnlqli
slnhqlnl*ffkliiiiifqpl*nnlksyrinnlkimnwrvqiiyymnlklv*imklkf*
ihfgkl*lif**linqikkkmklnq*lknilis*kllmi*in*nliyqtkn*n*n*kpkl
ki*lgdlminlkncad*kkfi*krilfhlrqpmilienlieflihnkknnkf


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U14111-1 (Contig-U14111-1Q)
/CSM_Contig/Contig-U14111-1Q.Seq.d
(1239 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U14111-1 (Contig-U14111-1Q) /CSM_Contig/Conti... 1277 0.0
Contig-U11258-1 (Contig-U11258-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U07546-1 (Contig-U07546-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U12907-1 (Contig-U12907-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U12496-1 (Contig-U12496-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U12210-1 (Contig-U12210-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U11827-1 (Contig-U11827-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U09220-1 (Contig-U09220-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U00805-1 (Contig-U00805-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U14235-1 (Contig-U14235-1Q) /CSM_Contig/Conti... 40 0.006

>Contig-U14111-1 (Contig-U14111-1Q) /CSM_Contig/Contig-U14111-1Q.Seq.d
Length = 1239

Score = 1277 bits (644), Expect = 0.0
Identities = 644/644 (100%)
Strand = Plus / Plus


Query: 596 aattctgcatcttcaacaatattacctacatcatttattggtttcttagaaaagatatta 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 aattctgcatcttcaacaatattacctacatcatttattggtttcttagaaaagatatta 655


Query: 656 aaaaatttaattaaatatttacaaggtagagcgaaaaaagattttccaactcaacctgca 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 aaaaatttaattaaatatttacaaggtagagcgaaaaaagattttccaactcaacctgca 715


Query: 716 actgatttctttaaaccaccaattaaatctgtaatttttcaaattaataattatcattat 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 actgatttctttaaaccaccaattaaatctgtaatttttcaaattaataattatcattat 775


Query: 776 atttcaacctctttaaaacaatctaaaatcttatcgaatcaacaatttgaaaataatgaa 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 atttcaacctctttaaaacaatctaaaatcttatcgaatcaacaatttgaaaataatgaa 835


Query: 836 ttggcgagtgcaaatcatatactacatgaatttgaaacttgtttagataatgaaattaaa 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 ttggcgagtgcaaatcatatactacatgaatttgaaacttgtttagataatgaaattaaa 895


Query: 896 gttttaaattcattttggaaaactatagctgatattttaataactaataaatcaaataaa 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 gttttaaattcattttggaaaactatagctgatattttaataactaataaatcaaataaa 955


Query: 956 gaaaaagatgaagttaaatcaataattaaaaaacatactaatttcttaaaaacttttaat 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956 gaaaaagatgaagttaaatcaataattaaaaaacatactaatttcttaaaaacttttaat 1015


Query: 1016 gatttaaataaattgaaatttgatataccagaccaagaattaaaattgaaattaaaaacc 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1016 gatttaaataaattgaaatttgatataccagaccaagaattaaaattgaaattaaaaacc 1075


Query: 1076 gaagctaaaaatataattgggagatcttatgatcaatttaaagaattgtgcagattagaa 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1076 gaagctaaaaatataattgggagatcttatgatcaatttaaagaattgtgcagattagaa 1135


Query: 1136 aaaattcatttagaaaagaattttgttccatttgagacaaccgatgatattaatagaaaa 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1136 aaaattcatttagaaaagaattttgttccatttgagacaaccgatgatattaatagaaaa 1195


Query: 1196 cttgatagagtttttgattcacaataagaaaaacaataaattta 1239
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1196 cttgatagagtttttgattcacaataagaaaaacaataaattta 1239


Score = 1120 bits (565), Expect = 0.0
Identities = 565/565 (100%)
Strand = Plus / Plus


Query: 1 caagggatcccatccactgatttcctacgttcaagaaacattgcgtctctatcagataga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caagggatcccatccactgatttcctacgttcaagaaacattgcgtctctatcagataga 60


Query: 61 gtacgatttggcaagtgaattatttggcaaccaatatcaattgattctcgacgaaatcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtacgatttggcaagtgaattatttggcaaccaatatcaattgattctcgacgaaatcat 120


Query: 121 tgaccctgcccatgaactactcttggaaaccactgaaccaatcattaaagtaagaaaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgaccctgcccatgaactactcttggaaaccactgaaccaatcattaaagtaagaaaaac 180


Query: 181 gcctggtgataaaatcttcagtattttcccattactagatctattcgatacttttactaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gcctggtgataaaatcttcagtattttcccattactagatctattcgatacttttactaa 240


Query: 241 actattaccagactttatcactgcaatcagttcaagagatggtaaacatattagtgaatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 actattaccagactttatcactgcaatcagttcaagagatggtaaacatattagtgaatt 300


Query: 301 aaaaactcaaattaaacatttacaagatacttgtgcctctctattagatttctcattgga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaaaactcaaattaaacatttacaagatacttgtgcctctctattagatttctcattgga 360


Query: 361 tgaagaaaaagaaatttcaagttcaaatagaaaagaaatcatctctgatgcaactgttga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgaagaaaaagaaatttcaagttcaaatagaaaagaaatcatctctgatgcaactgttga 420


Query: 421 tgaaatctcttcaaatatgatcaattattttaaacgtttaattgaatataaacattctgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tgaaatctcttcaaatatgatcaattattttaaacgtttaattgaatataaacattctgt 480


Query: 481 tgaattattattaaaaggtcaagataataataatagtaacagcaatagtaatgcaccatc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tgaattattattaaaaggtcaagataataataatagtaacagcaatagtaatgcaccatc 540


Query: 541 atcaacctcttcaaatagtaaatct 565
|||||||||||||||||||||||||
Sbjct: 541 atcaacctcttcaaatagtaaatct 565


>Contig-U11258-1 (Contig-U11258-1Q) /CSM_Contig/Contig-U11258-1Q.Seq.d
Length = 2324

Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus


Query: 504 ataataataatagtaacagcaatagtaatg 533
|||||||||||||||| || ||||||||||
Sbjct: 480 ataataataatagtaatagtaatagtaatg 509


>Contig-U07546-1 (Contig-U07546-1Q) /CSM_Contig/Contig-U07546-1Q.Seq.d
Length = 1050

Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus


Query: 504 ataataataatagtaacagcaatagtaatg 533
|||||||||||| ||||| |||||||||||
Sbjct: 545 ataataataataataacaacaatagtaatg 574


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 43,559
Number of Sequences: 6905
Number of extensions: 43559
Number of successful extensions: 5478
Number of sequences better than 10.0: 806
length of query: 1239
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1223
effective length of database: 5,564,391
effective search space: 6805250193
effective search space used: 6805250193
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.18
Homology vs DNA
Query= Contig-U14111-1 (Contig-U14111-1Q) /CSM_Contig/Contig-U14111-1Q.Seq.d
(1239 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 1120 0.0 2
(BJ443149) Dictyostelium discoideum cDNA clone:ddv52f01, 3' ... 1092 0.0 1
(BJ354473) Dictyostelium discoideum cDNA clone:dda53a22, 3' ... 609 0.0 3
(BJ381969) Dictyostelium discoideum cDNA clone:ddc43a17, 3' ... 525 0.0 2
(BJ443309) Dictyostelium discoideum cDNA clone:ddv52e14, 3' ... 660 0.0 3
(BJ384246) Dictyostelium discoideum cDNA clone:ddc48c21, 3' ... 634 0.0 4
(BJ407635) Dictyostelium discoideum cDNA clone:dds43m06, 3' ... 597 0.0 2
(AU034646) Dictyostelium discoideum slug cDNA, clone SLE120. 402 0.0 2
(BJ440768) Dictyostelium discoideum cDNA clone:ddv44m15, 3' ... 579 0.0 2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 42 8e-06 17
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 42 5e-04 15
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 50 9e-04 10
(AE014829) Plasmodium falciparum 3D7 chromosome 10 section 1... 42 0.001 12
(CU817314) A BAC library has been constructed from PN40024 g... 40 0.002 4
(AP006628) Onion yellows phytoplasma OY-M DNA, complete genome. 38 0.002 18
(CP000551) Prochlorococcus marinus str. AS9601, complete gen... 36 0.003 22
(AL844507) Plasmodium falciparum chromosome 8. 42 0.003 15
(EX815044) CBNA433.fwd CBNA Phycomyces blakesleeanus NRRL155... 56 0.003 1
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 40 0.006 13
(AC116551) Dictyostelium discoideum chromosome 2 map complem... 36 0.007 10
(BX294119) Zebrafish DNA sequence from clone CH211-113D22 in... 36 0.009 8
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 42 0.013 12
(AC161879) Mus musculus BAC clone RP23-264A15 from chromosom... 42 0.015 5
(AC004926) Homo sapiens PAC clone RP5-910H9 from 7, complete... 50 0.017 6
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-... 36 0.019 10
(CR382400) Plasmodium falciparum chromosome 6, complete sequ... 40 0.021 13
(AL445565) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 40 0.024 12
(CU633741) Zebrafish DNA sequence from clone CH1073-279O1 in... 44 0.029 4
(AC192826) Pan troglodytes BAC clone CH251-596N9 from chromo... 50 0.032 6
(CU695208) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 0.033 2
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 36 0.033 16
(AL954387) Zebrafish DNA sequence from clone CH211-288B20 in... 42 0.033 2
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 42 0.036 14
(AC211049) Solanum lycopersicum chromosome 6 clone C06HBa011... 44 0.037 5
(AC195449) Glycine tomentella clone gtt1-298n2, complete seq... 46 0.038 7
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl... 40 0.040 15
(BX238521) Danio rerio genomic clone DKEY-284M21, genomic su... 42 0.042 2
(AC006281) Plasmodium falciparum chromosome 12 clone 3D7, **... 36 0.042 11
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 32 0.048 12
(CP000727) Clostridium botulinum A str. Hall, complete genome. 46 0.050 16
(FH100692) CHO_OF3036xg18f1.ab1 CHO_OF3 Nicotiana tabacum ge... 50 0.062 2
(AE014837) Plasmodium falciparum 3D7 chromosome 11 section 2... 34 0.080 10
(AE017263) Mesoplasma florum L1 complete genome. 34 0.081 16
(D31785) Pichia canadensis mitochondrial genomic DNA, comple... 32 0.085 7
(CU694839) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.090 5
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 38 0.091 15
(CU861611) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 0.11 6
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 42 0.13 10
(AP005672) Physcomitrella patens subsp. patens chloroplast D... 40 0.14 8
(AL844506) Plasmodium falciparum chromosome 7. 34 0.15 16
(FE126643) LV_HP_RA05C12f Litopenaeus vannamei hepatopancrea... 42 0.16 2
(CT030037) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 0.16 6
(AC114265) Dictyostelium discoideum chromosome 2 map 4520461... 38 0.17 5
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 38 0.18 11
(AC216645) Solanum lycopersicum chromosome 6 clone C06HBa002... 44 0.18 6
(U32174) Dictyostelium discoideum spore lysis A (splA) gene,... 50 0.20 1
(AF016679) Caenorhabditis elegans cosmid T28C12, complete se... 50 0.20 1
(AC150578) Bos taurus clone CH240-269N19, WORKING DRAFT SEQU... 50 0.20 1
(AC113887) Rattus norvegicus clone CH230-330F6, WORKING DRAF... 50 0.20 1
(AC106464) Rattus norvegicus clone CH230-209K23, *** SEQUENC... 50 0.20 1
(AC106402) Rattus norvegicus clone CH230-130H6, *** SEQUENCI... 50 0.20 1
(AC224347) Bos taurus clone CH240-487C14, WORKING DRAFT SEQU... 50 0.20 1
(AC164278) Bos taurus clone CH240-132L10, WORKING DRAFT SEQU... 50 0.20 1
(AC006740) Caenorhabditis elegans clone Y38B5, *** SEQUENCIN... 50 0.20 1
(FH420744) CHO_OF4893xd17r1.ab1 CHO_OF4 Nicotiana tabacum ge... 50 0.20 1
(EJ889228) 1093018433515 Global-Ocean-Sampling_GS-30-02-01-1... 50 0.20 1
(EJ826434) 1093017562319 Global-Ocean-Sampling_GS-30-02-01-1... 50 0.20 1
(CE311624) tigr-gss-dog-17000360837950 Dog Library Canis lup... 50 0.20 1
(BZ116513) CH230-460M17.TV CHORI-230 Segment 2 Rattus norveg... 50 0.20 1
(EE009336) ROE00005872 Rhizopus oryzae Company Rhizopus oryz... 50 0.20 1
(EX849428) CBNC7919.rev CBNC Phycomyces blakesleeanus NRRL15... 50 0.20 1
(CP001056) Clostridium botulinum B str. Eklund 17B, complete... 38 0.21 17
(CP000013) Borrelia garinii PBi, complete genome. 36 0.21 18
(CX094440) EHAFZ22TR E. histolytica Normalized cDNA library ... 38 0.21 2
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 36 0.26 11
(ER566924) 1093015773748 Global-Ocean-Sampling_GS-36-01-01-2... 40 0.28 2
(AC202820) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB... 40 0.28 6
(AL021408) Human DNA sequence from clone RP3-523C21 on chrom... 42 0.36 8
(AC186776) Trichinella spiralis chromosome UNK clone TS195-3... 44 0.39 8
(AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6... 32 0.43 14
(CP000552) Prochlorococcus marinus str. MIT 9515, complete g... 32 0.45 20
(BX569788) Zebrafish DNA sequence from clone CH211-161N19 in... 34 0.45 2
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 36 0.45 18
(CS790008) Sequence 1264 from Patent WO2005031001. 42 0.45 7
(BD061520) Genome DNA of symbiotic bacteria of aphid. 36 0.47 18
(AR409405) Sequence 1 from patent US 6632935. 36 0.47 18
(BA000003) Buchnera aphidicola str. APS (Acyrthosiphon pisum... 36 0.47 18
(CU633946) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 0.54 7
(CP000061) Aster yellows witches'-broom phytoplasma AYWB, co... 34 0.56 18
(AE014842) Plasmodium falciparum 3D7 chromosome 11 section 7... 46 0.57 10
(EK314640) 1095462409020 Global-Ocean-Sampling_GS-31-01-01-1... 38 0.58 2
(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ... 34 0.58 10
(DQ366035) Clostridium perfringens strain CW92 plasmid pCW3,... 32 0.59 8
(AM448970) Vitis vinifera contig VV78X171199.3, whole genome... 36 0.61 4
(EK328604) 1095467015327 Global-Ocean-Sampling_GS-31-01-01-1... 40 0.62 3
(AE014847) Plasmodium falciparum 3D7 chromosome 12, section ... 32 0.64 11
(AC013757) Homo sapiens clone RP11-1K24, WORKING DRAFT SEQUE... 40 0.67 5
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome. 40 0.68 13
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 34 0.70 11
(AE015927) Clostridium tetani E88, complete genome. 34 0.70 21

>(AC117176) Dictyostelium discoideum chromosome 2 map 5018074-5200947
strain AX4, complete sequence.
Length = 182871

Score = 1120 bits (565), Expect(2) = 0.0
Identities = 565/565 (100%)
Strand = Plus / Minus


Query: 1 caagggatcccatccactgatttcctacgttcaagaaacattgcgtctctatcagataga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166478 caagggatcccatccactgatttcctacgttcaagaaacattgcgtctctatcagataga 166419


Query: 61 gtacgatttggcaagtgaattatttggcaaccaatatcaattgattctcgacgaaatcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166418 gtacgatttggcaagtgaattatttggcaaccaatatcaattgattctcgacgaaatcat 166359


Query: 121 tgaccctgcccatgaactactcttggaaaccactgaaccaatcattaaagtaagaaaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166358 tgaccctgcccatgaactactcttggaaaccactgaaccaatcattaaagtaagaaaaac 166299


Query: 181 gcctggtgataaaatcttcagtattttcccattactagatctattcgatacttttactaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166298 gcctggtgataaaatcttcagtattttcccattactagatctattcgatacttttactaa 166239


Query: 241 actattaccagactttatcactgcaatcagttcaagagatggtaaacatattagtgaatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166238 actattaccagactttatcactgcaatcagttcaagagatggtaaacatattagtgaatt 166179


Query: 301 aaaaactcaaattaaacatttacaagatacttgtgcctctctattagatttctcattgga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166178 aaaaactcaaattaaacatttacaagatacttgtgcctctctattagatttctcattgga 166119


Query: 361 tgaagaaaaagaaatttcaagttcaaatagaaaagaaatcatctctgatgcaactgttga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166118 tgaagaaaaagaaatttcaagttcaaatagaaaagaaatcatctctgatgcaactgttga 166059


Query: 421 tgaaatctcttcaaatatgatcaattattttaaacgtttaattgaatataaacattctgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166058 tgaaatctcttcaaatatgatcaattattttaaacgtttaattgaatataaacattctgt 165999


Query: 481 tgaattattattaaaaggtcaagataataataatagtaacagcaatagtaatgcaccatc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165998 tgaattattattaaaaggtcaagataataataatagtaacagcaatagtaatgcaccatc 165939


Query: 541 atcaacctcttcaaatagtaaatct 565
|||||||||||||||||||||||||
Sbjct: 165938 atcaacctcttcaaatagtaaatct 165914

Score = 668 bits (337), Expect(2) = 0.0
Identities = 337/337 (100%)
Strand = Plus / Minus


Query: 596 aattctgcatcttcaacaatattacctacatcatttattggtttcttagaaaagatatta 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165883 aattctgcatcttcaacaatattacctacatcatttattggtttcttagaaaagatatta 165824


Query: 656 aaaaatttaattaaatatttacaaggtagagcgaaaaaagattttccaactcaacctgca 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165823 aaaaatttaattaaatatttacaaggtagagcgaaaaaagattttccaactcaacctgca 165764


Query: 716 actgatttctttaaaccaccaattaaatctgtaatttttcaaattaataattatcattat 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165763 actgatttctttaaaccaccaattaaatctgtaatttttcaaattaataattatcattat 165704


Query: 776 atttcaacctctttaaaacaatctaaaatcttatcgaatcaacaatttgaaaataatgaa 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165703 atttcaacctctttaaaacaatctaaaatcttatcgaatcaacaatttgaaaataatgaa 165644


Query: 836 ttggcgagtgcaaatcatatactacatgaatttgaaacttgtttagataatgaaattaaa 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165643 ttggcgagtgcaaatcatatactacatgaatttgaaacttgtttagataatgaaattaaa 165584


Query: 896 gttttaaattcattttggaaaactatagctgatattt 932
|||||||||||||||||||||||||||||||||||||
Sbjct: 165583 gttttaaattcattttggaaaactatagctgatattt 165547

Score = 232 bits (117), Expect(4) = 2e-98
Identities = 117/117 (100%)
Strand = Plus / Minus


Query: 1123 gtgcagattagaaaaaattcatttagaaaagaattttgttccatttgagacaaccgatga 1182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165055 gtgcagattagaaaaaattcatttagaaaagaattttgttccatttgagacaaccgatga 164996


Query: 1183 tattaatagaaaacttgatagagtttttgattcacaataagaaaaacaataaattta 1239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164995 tattaatagaaaacttgatagagtttttgattcacaataagaaaaacaataaattta 164939

Score = 174 bits (88), Expect(4) = 2e-98
Identities = 88/88 (100%)
Strand = Plus / Minus


Query: 1037 gatataccagaccaagaattaaaattgaaattaaaaaccgaagctaaaaatataattggg 1096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165298 gatataccagaccaagaattaaaattgaaattaaaaaccgaagctaaaaatataattggg 165239


Query: 1097 agatcttatgatcaatttaaagaattgt 1124
||||||||||||||||||||||||||||
Sbjct: 165238 agatcttatgatcaatttaaagaattgt 165211

Score = 34.2 bits (17), Expect(4) = 2e-98
Identities = 17/17 (100%)
Strand = Plus / Minus


Query: 655 aaaaaatttaattaaat 671
|||||||||||||||||
Sbjct: 168084 aaaaaatttaattaaat 168068

Score = 30.2 bits (15), Expect(4) = 2e-98
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 479 gttgaattattatta 493
|||||||||||||||
Sbjct: 175734 gttgaattattatta 175720

Score = 34.2 bits (17), Expect(12) = 0.052
Identities = 20/21 (95%)
Strand = Plus / Minus


Query: 756 aaattaataattatcattata 776
|||||||||||||| ||||||
Sbjct: 40040 aaattaataattattattata 40020

Score = 34.2 bits (17), Expect(12) = 0.052
Identities = 20/21 (95%)
Strand = Plus / Minus


Query: 512 aatagtaacagcaatagtaat 532
|||||||| ||||||||||||
Sbjct: 143088 aatagtaatagcaatagtaat 143068

Score = 30.2 bits (15), Expect(12) = 0.052
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 806 ttatcgaatcaacaa 820
|||||||||||||||
Sbjct: 23705 ttatcgaatcaacaa 23691

Score = 30.2 bits (15), Expect(12) = 0.052
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 648 agatattaaaaaatt 662
|||||||||||||||
Sbjct: 52192 agatattaaaaaatt 52178

Score = 28.2 bits (14), Expect(12) = 0.052
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 484 attattattaaaag 497
||||||||||||||
Sbjct: 155171 attattattaaaag 155158

Score = 28.2 bits (14), Expect(12) = 0.052
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 425 atctcttcaaatat 438
||||||||||||||
Sbjct: 163518 atctcttcaaatat 163505

Score = 26.3 bits (13), Expect(12) = 0.052
Identities = 13/13 (100%)
Strand = Plus / Minus


Query: 883 taatgaaattaaa 895
|||||||||||||
Sbjct: 14943 taatgaaattaaa 14931

Score = 26.3 bits (13), Expect(12) = 0.052
Identities = 13/13 (100%)
Strand = Plus / Minus


Query: 795 aatctaaaatctt 807
|||||||||||||
Sbjct: 35939 aatctaaaatctt 35927

Score = 26.3 bits (13), Expect(12) = 0.052
Identities = 16/17 (94%)
Strand = Plus / Minus


Query: 659 aatttaattaaatattt 675
||||| |||||||||||
Sbjct: 45299 aattttattaaatattt 45283

Score = 26.3 bits (13), Expect(12) = 0.052
Identities = 13/13 (100%)
Strand = Plus / Minus


Query: 630 ttattggtttctt 642
|||||||||||||
Sbjct: 101220 ttattggtttctt 101208

Score = 26.3 bits (13), Expect(12) = 0.052
Identities = 13/13 (100%)
Strand = Plus / Minus


Query: 504 ataataataatag 516
|||||||||||||
Sbjct: 143117 ataataataatag 143105

Score = 26.3 bits (13), Expect(12) = 0.052
Identities = 13/13 (100%)
Strand = Plus / Minus


Query: 355 attggatgaagaa 367
|||||||||||||
Sbjct: 168162 attggatgaagaa 168150

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,612,231,422
Number of extensions: 110446275
Number of successful extensions: 9793994
Number of sequences better than 10.0: 429
Length of query: 1239
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1215
Effective length of database: 97,308,875,965
Effective search space: 118230284297475
Effective search space used: 118230284297475
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 9
Homology vs Protein
Query= Contig-U14111-1 (Contig-U14111-1Q) /CSM_Contig/Contig-U14111-1Q.Seq.d
(1239 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q558Z9) RecName: Full=Exocyst complex component 7; AltName: Ful... 679 0.0
(Q9VSJ8) RecName: Full=Exocyst complex component 7; AltName: Ful... 55 5e-06
BC102925_1(BC102925|pid:none) Bos taurus exocyst complex compone... 53 3e-05
BC161031_1(BC161031|pid:none) Xenopus tropicalis exocyst complex... 52 3e-05
BC052121_1(BC052121|pid:none) Danio rerio exocyst complex compon... 52 3e-05
(O54922) RecName: Full=Exocyst complex component 7; AltName: Ful... 51 7e-05
BC053710_1(BC053710|pid:none) Mus musculus exocyst complex compo... 50 1e-04
AL645861_5(AL645861|pid:none) Mouse DNA sequence from clone RP23... 50 1e-04
G87753(G87753) protein C43E11.8 [imported] - Caenorhabditis eleg... 50 1e-04
AJ720751_1(AJ720751|pid:none) Gallus gallus mRNA for hypothetica... 49 3e-04
AK173094_1(AK173094|pid:none) Mus musculus premature mRNA for mK... 49 3e-04
AF014461_1(AF014461|pid:none) Mus musculus EXO70 protein (Exo70)... 49 3e-04
BT041886_1(BT041886|pid:none) Zea mays full-length cDNA clone ZM... 49 4e-04
FB921442_1(FB921442|pid:none) Sequence 140715 from Patent WO2008... 49 4e-04
FJ457120_1(FJ457120|pid:none) Homo sapiens EXOC7 splice variant ... 49 5e-04
AB028990_1(AB028990|pid:none) Homo sapiens mRNA for KIAA1067 pro... 49 5e-04
BC018466_1(BC018466|pid:none) Homo sapiens exocyst complex compo... 49 5e-04
BT045699_1(BT045699|pid:none) Salmo salar clone ssal-rgf-529-025... 49 5e-04
AK295871_1(AK295871|pid:none) Homo sapiens cDNA FLJ58532 complet... 47 0.001
AE001362_157(AE001362|pid:none) Plasmodium falciparum 3D7 chromo... 47 0.001
CR860624_1(CR860624|pid:none) Pongo abelii mRNA; cDNA DKFZp459C0... 46 0.002
AK023832_1(AK023832|pid:none) Homo sapiens cDNA FLJ13770 fis, cl... 46 0.003
BX647763_1(BX647763|pid:none) Homo sapiens mRNA; cDNA DKFZp686P1... 46 0.003
AY869728_1(AY869728|pid:none) Homo sapiens 2-5-3p (EXOC7) mRNA, ... 45 0.004
AL111168_40(AL111168|pid:none) Campylobacter jejuni subsp. jejun... 45 0.005
AB179434_1(AB179434|pid:none) Macaca fascicularis testis cDNA cl... 42 0.045
BT033485_1(BT033485|pid:none) Zea mays full-length cDNA clone ZM... 40 0.23
CP000939_2707(CP000939|pid:none) Clostridium botulinum B1 str. O... 39 0.29
CU179680_325(CU179680|pid:none) Mycoplasma agalactiae PG2 chromo... 39 0.50
E71606(E71606)hypothetical protein PFB0765w - malaria parasite (... 39 0.50
AJ965256_434(AJ965256|pid:none) Dehalococcoides sp. CBDB1 comple... 38 0.66
CP000496_11(CP000496|pid:none) Pichia stipitis CBS 6054 chromoso... 38 0.66
(P61243) RecName: Full=Protein ycf2; &AP005672_45(AP005672|pid:... 37 1.1
(Q8D294) RecName: Full=Valyl-tRNA synthetase; EC=6.1.1.... 37 1.1
(Q12234) RecName: Full=GRIP domain-containing protein RUD3; AltN... 37 1.1
AL844505_136(AL844505|pid:none) Plasmodium falciparum 3D7 chromo... 37 1.1
CR382399_52(CR382399|pid:none) Plasmodium falciparum chromosome ... 37 1.1
CP000814_44(CP000814|pid:none) Campylobacter jejuni subsp. jejun... 37 1.5
AL034559_1(AL034559|pid:none) Plasmodium falciparum MAL3P7, comp... 37 1.5
CP000123_37(CP000123|pid:none) Mycoplasma capricolum subsp. capr... 37 1.9
AF250284_222(AF250284|pid:none) Amsacta moorei entomopoxvirus, c... 37 1.9
CP000688_518(CP000688|pid:none) Dehalococcoides sp. BAV1, comple... 36 2.5
EF587370_1(EF587370|pid:none) Oedogonium cardiacum strain SAG 57... 36 2.5
(Q12104) RecName: Full=Transcriptional protein SWT1; AltName: Fu... 36 2.5
BX293980_7(BX293980|pid:none) Mycoplasma mycoides subsp. mycoide... 36 2.5
CU928166_189(CU928166|pid:none) Kluyveromyces thermotolerans str... 36 3.3
CP000123_802(CP000123|pid:none) Mycoplasma capricolum subsp. cap... 35 4.2
AM422018_468(AM422018|pid:none) Candidatus Phytoplasma australie... 35 4.2
CP000679_1546(CP000679|pid:none) Caldicellulosiruptor saccharoly... 35 4.2
AL844509_194(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 35 4.2
CP000996_9(CP000996|pid:none) Borrelia recurrentis A1 plasmid pl... 35 5.5
CP000853_1837(CP000853|pid:none) Alkaliphilus oremlandii OhILAs,... 35 5.5
AE014187_169(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 35 5.5
DQ489736_592(DQ489736|pid:none) Leuconostoc citreum KM20, comple... 35 5.5
L03188_1(L03188|pid:none) Saccharomyces cerevisiae integrin anal... 35 5.5
AE009439_1144(AE009439|pid:none) Methanopyrus kandleri AV19, com... 35 5.6
CP000932_15(CP000932|pid:none) Campylobacter lari RM2100, comple... 35 7.2
(Q54JK1) RecName: Full=TPR repeat-containing protein DDB_G0287999; 35 7.2
AC116957_94(AC116957|pid:none) Dictyostelium discoideum chromoso... 35 7.2
AF329367_3(AF329367|pid:none) Enterococcus faecalis putative pat... 35 7.2
CP000768_40(CP000768|pid:none) Campylobacter jejuni subsp. doyle... 35 7.2
AM910996_436(AM910996|pid:none) Plasmodium knowlesi strain H chr... 35 7.2
AP009608_375(AP009608|pid:none) Mycoplasma fermentans PG18 DNA, ... 35 7.2
AP005098_11(AP005098|pid:none) Oryza sativa Japonica Group genom... 34 9.5
AE017354_1287(AE017354|pid:none) Legionella pneumophila subsp. p... 34 9.5
AC016661_10(AC016661|pid:none) Arabidopsis thaliana chromosome 3... 34 9.5
AE014188_23(AE014188|pid:none) Plasmodium falciparum 3D7 chromos... 34 9.5
AP008213_502(AP008213|pid:none) Oryza sativa (japonica cultivar-... 34 9.5
CR380956_310(CR380956|pid:none) Candida glabrata strain CBS138 c... 34 9.5
(Q8EW01) RecName: Full=Seryl-tRNA synthetase; EC=6.1.1.... 34 9.5
CR626927_3210(CR626927|pid:none) Bacteroides fragilis NCTC 9343,... 34 9.5
AD1675(AD1675) conserved hypothetical protein homolog lin1942 [i... 34 9.5
AP005098_10(AP005098|pid:none) Oryza sativa Japonica Group genom... 34 9.5
(Q97WH0) RecName: Full=DNA double-strand break repair rad50 ATPa... 34 9.5
AL844508_173(AL844508|pid:none) Plasmodium falciparum 3D7 chromo... 34 9.5

>(Q558Z9) RecName: Full=Exocyst complex component 7; AltName:
Full=Exocyst complex component Exo70;
Length = 840

Score = 679 bits (1752), Expect = 0.0
Identities = 354/406 (87%), Positives = 354/406 (87%)
Frame = +2

Query: 2 KGSHPLISYVQETLRLYQIEYDLASELFGNQYQLILDEIIDPAHELLLETTEPIIKVRKT 181
KGSHPLISYVQETLRLYQIEYDLASELFGNQYQLILDEIIDPAHELLLETTEPIIKVRKT
Sbjct: 435 KGSHPLISYVQETLRLYQIEYDLASELFGNQYQLILDEIIDPAHELLLETTEPIIKVRKT 494

Query: 182 PGDKIFSIXXXXXXXXXXXXXXXXXITAISSRDGKHISELKTQIKHLQDTCASLLDFSLD 361
PGDKIFSI ITAISSRDGKHISELKTQIKHLQDTCASLLDFSLD
Sbjct: 495 PGDKIFSIFPLLDLFDTFTKLLPDFITAISSRDGKHISELKTQIKHLQDTCASLLDFSLD 554

Query: 362 EEKEISSSNRKEIISDATVDEISSNMINYFKRLIEYKHSVELLLKGQDXXXXXXXXXXXX 541
EEKEISSSNRKEIISDATVDEISSNMINYFKRLIEYKHSVELLLKGQD
Sbjct: 555 EEKEISSSNRKEIISDATVDEISSNMINYFKRLIEYKHSVELLLKGQDNNNSNSNSNAPS 614

Query: 542 XXXXXXXXXXXXXXXXXXXXXXXTILPTSFIGFLEKILKNLIKYLQGRAKKDFPTQPATD 721
TILPTSFIGFLEKILKNLIKYLQGRAKKDFPTQPATD
Sbjct: 615 STSSNSKSSSSSSSSSSSNSASSTILPTSFIGFLEKILKNLIKYLQGRAKKDFPTQPATD 674

Query: 722 FFKPPIKSVIFQINNYHYISTSLKQSKILSNQQFENNELASANHILHEFETCLDNEIKVL 901
FFKPPIKSVIFQINNYHYISTSLKQSKILSNQQFENNELASANHILHEFETCLDNEIKVL
Sbjct: 675 FFKPPIKSVIFQINNYHYISTSLKQSKILSNQQFENNELASANHILHEFETCLDNEIKVL 734

Query: 902 NSFWKTIADILITNKSNKEKDEVKSIIKKHTNFLKTFNDLNKLKFDIPDQELKLKLKTEA 1081
NSFWKTIADILITNKSNKEKDEVKSIIKKHTNFLKTFNDLNKLKFDIPDQELKLKLKTEA
Sbjct: 735 NSFWKTIADILITNKSNKEKDEVKSIIKKHTNFLKTFNDLNKLKFDIPDQELKLKLKTEA 794

Query: 1082 KNIIGRSYDQFKELCRLEKIHLEKNFVPFETTDDINRKLDRVFDSQ 1219
KNIIGRSYDQFKELCRLEKIHLEKNFVPFETTDDINRKLDRVFDSQ
Sbjct: 795 KNIIGRSYDQFKELCRLEKIHLEKNFVPFETTDDINRKLDRVFDSQ 840

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,482,910,277
Number of extensions: 24222882
Number of successful extensions: 73068
Number of sequences better than 10.0: 75
Number of HSP's gapped: 72984
Number of HSP's successfully gapped: 75
Length of query: 413
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 282
Effective length of database: 627,191,635
Effective search space: 176868041070
Effective search space used: 176868041070
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.81 gvh: 0.31 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.25 mip: 0.00
nuc: 0.03 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
28.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: plasma membrane

>> prediction for Contig-U14111-1 is cyt

VS (DIR, S) 0
VH (FL, L) 3
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 1
SF (FL, S) 0
CH (FL, L) 2
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0