Contig-U14111-1 |
Contig ID |
Contig-U14111-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
no gap |
Contig length |
1239 |
Chromosome number (1..6, M) |
2 |
Chromosome length |
8467578 |
Start point |
2015478 |
End point |
2014238 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
8 |
Number of EST |
8 |
Link to clone list |
U14111 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.12.18 |
Homology vs DNA |
Query= Contig-U14111-1 (Contig-U14111-1Q) /CSM_Contig/Contig-U14111-1Q.Seq.d (1239 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 1120 0.0 2 (BJ443149) Dictyostelium discoideum cDNA clone:ddv52f01, 3' ... 1092 0.0 1 (BJ354473) Dictyostelium discoideum cDNA clone:dda53a22, 3' ... 609 0.0 3 (BJ381969) Dictyostelium discoideum cDNA clone:ddc43a17, 3' ... 525 0.0 2 (BJ443309) Dictyostelium discoideum cDNA clone:ddv52e14, 3' ... 660 0.0 3 (BJ384246) Dictyostelium discoideum cDNA clone:ddc48c21, 3' ... 634 0.0 4 (BJ407635) Dictyostelium discoideum cDNA clone:dds43m06, 3' ... 597 0.0 2 (AU034646) Dictyostelium discoideum slug cDNA, clone SLE120. 402 0.0 2 (BJ440768) Dictyostelium discoideum cDNA clone:ddv44m15, 3' ... 579 0.0 2 (AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 42 8e-06 17 (AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 42 5e-04 15 (AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 50 9e-04 10 (AE014829) Plasmodium falciparum 3D7 chromosome 10 section 1... 42 0.001 12 (CU817314) A BAC library has been constructed from PN40024 g... 40 0.002 4 (AP006628) Onion yellows phytoplasma OY-M DNA, complete genome. 38 0.002 18 (CP000551) Prochlorococcus marinus str. AS9601, complete gen... 36 0.003 22 (AL844507) Plasmodium falciparum chromosome 8. 42 0.003 15 (EX815044) CBNA433.fwd CBNA Phycomyces blakesleeanus NRRL155... 56 0.003 1 (AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 40 0.006 13 (AC116551) Dictyostelium discoideum chromosome 2 map complem... 36 0.007 10 (BX294119) Zebrafish DNA sequence from clone CH211-113D22 in... 36 0.009 8 (AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 42 0.013 12 (AC161879) Mus musculus BAC clone RP23-264A15 from chromosom... 42 0.015 5 (AC004926) Homo sapiens PAC clone RP5-910H9 from 7, complete... 50 0.017 6 (AC114263) Dictyostelium discoideum chromosome 2 map 215673-... 36 0.019 10 (CR382400) Plasmodium falciparum chromosome 6, complete sequ... 40 0.021 13 (AL445565) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 40 0.024 12 (CU633741) Zebrafish DNA sequence from clone CH1073-279O1 in... 44 0.029 4 (AC192826) Pan troglodytes BAC clone CH251-596N9 from chromo... 50 0.032 6 (CU695208) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 0.033 2 (AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 36 0.033 16 (AL954387) Zebrafish DNA sequence from clone CH211-288B20 in... 42 0.033 2 (AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 42 0.036 14 (AC211049) Solanum lycopersicum chromosome 6 clone C06HBa011... 44 0.037 5 (AC195449) Glycine tomentella clone gtt1-298n2, complete seq... 46 0.038 7 (CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl... 40 0.040 15 (BX238521) Danio rerio genomic clone DKEY-284M21, genomic su... 42 0.042 2 (AC006281) Plasmodium falciparum chromosome 12 clone 3D7, **... 36 0.042 11 (AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 32 0.048 12 (CP000727) Clostridium botulinum A str. Hall, complete genome. 46 0.050 16 (FH100692) CHO_OF3036xg18f1.ab1 CHO_OF3 Nicotiana tabacum ge... 50 0.062 2 (AE014837) Plasmodium falciparum 3D7 chromosome 11 section 2... 34 0.080 10 (AE017263) Mesoplasma florum L1 complete genome. 34 0.081 16 (D31785) Pichia canadensis mitochondrial genomic DNA, comple... 32 0.085 7 (CU694839) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.090 5 (CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 38 0.091 15 (CU861611) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 0.11 6 (AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 42 0.13 10 (AP005672) Physcomitrella patens subsp. patens chloroplast D... 40 0.14 8 (AL844506) Plasmodium falciparum chromosome 7. 34 0.15 16 (FE126643) LV_HP_RA05C12f Litopenaeus vannamei hepatopancrea... 42 0.16 2 (CT030037) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 0.16 6 (AC114265) Dictyostelium discoideum chromosome 2 map 4520461... 38 0.17 5 (AC116960) Dictyostelium discoideum chromosome 2 map complem... 38 0.18 11 (AC216645) Solanum lycopersicum chromosome 6 clone C06HBa002... 44 0.18 6 (U32174) Dictyostelium discoideum spore lysis A (splA) gene,... 50 0.20 1 (AF016679) Caenorhabditis elegans cosmid T28C12, complete se... 50 0.20 1 (AC150578) Bos taurus clone CH240-269N19, WORKING DRAFT SEQU... 50 0.20 1 (AC113887) Rattus norvegicus clone CH230-330F6, WORKING DRAF... 50 0.20 1 (AC106464) Rattus norvegicus clone CH230-209K23, *** SEQUENC... 50 0.20 1 (AC106402) Rattus norvegicus clone CH230-130H6, *** SEQUENCI... 50 0.20 1 (AC224347) Bos taurus clone CH240-487C14, WORKING DRAFT SEQU... 50 0.20 1 (AC164278) Bos taurus clone CH240-132L10, WORKING DRAFT SEQU... 50 0.20 1 (AC006740) Caenorhabditis elegans clone Y38B5, *** SEQUENCIN... 50 0.20 1 (FH420744) CHO_OF4893xd17r1.ab1 CHO_OF4 Nicotiana tabacum ge... 50 0.20 1 (EJ889228) 1093018433515 Global-Ocean-Sampling_GS-30-02-01-1... 50 0.20 1 (EJ826434) 1093017562319 Global-Ocean-Sampling_GS-30-02-01-1... 50 0.20 1 (CE311624) tigr-gss-dog-17000360837950 Dog Library Canis lup... 50 0.20 1 (BZ116513) CH230-460M17.TV CHORI-230 Segment 2 Rattus norveg... 50 0.20 1 (EE009336) ROE00005872 Rhizopus oryzae Company Rhizopus oryz... 50 0.20 1 (EX849428) CBNC7919.rev CBNC Phycomyces blakesleeanus NRRL15... 50 0.20 1 (CP001056) Clostridium botulinum B str. Eklund 17B, complete... 38 0.21 17 (CP000013) Borrelia garinii PBi, complete genome. 36 0.21 18 (CX094440) EHAFZ22TR E. histolytica Normalized cDNA library ... 38 0.21 2 (AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 36 0.26 11 (ER566924) 1093015773748 Global-Ocean-Sampling_GS-36-01-01-2... 40 0.28 2 (AC202820) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB... 40 0.28 6 (AL021408) Human DNA sequence from clone RP3-523C21 on chrom... 42 0.36 8 (AC186776) Trichinella spiralis chromosome UNK clone TS195-3... 44 0.39 8 (AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6... 32 0.43 14 (CP000552) Prochlorococcus marinus str. MIT 9515, complete g... 32 0.45 20 (BX569788) Zebrafish DNA sequence from clone CH211-161N19 in... 34 0.45 2 (CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 36 0.45 18 (CS790008) Sequence 1264 from Patent WO2005031001. 42 0.45 7 (BD061520) Genome DNA of symbiotic bacteria of aphid. 36 0.47 18 (AR409405) Sequence 1 from patent US 6632935. 36 0.47 18 (BA000003) Buchnera aphidicola str. APS (Acyrthosiphon pisum... 36 0.47 18 (CU633946) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 0.54 7 (CP000061) Aster yellows witches'-broom phytoplasma AYWB, co... 34 0.56 18 (AE014842) Plasmodium falciparum 3D7 chromosome 11 section 7... 46 0.57 10 (EK314640) 1095462409020 Global-Ocean-Sampling_GS-31-01-01-1... 38 0.58 2 (AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ... 34 0.58 10 (DQ366035) Clostridium perfringens strain CW92 plasmid pCW3,... 32 0.59 8 (AM448970) Vitis vinifera contig VV78X171199.3, whole genome... 36 0.61 4 (EK328604) 1095467015327 Global-Ocean-Sampling_GS-31-01-01-1... 40 0.62 3 (AE014847) Plasmodium falciparum 3D7 chromosome 12, section ... 32 0.64 11 (AC013757) Homo sapiens clone RP11-1K24, WORKING DRAFT SEQUE... 40 0.67 5 (BA000026) Mycoplasma penetrans HF-2 DNA, complete genome. 40 0.68 13 (AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 34 0.70 11 (AE015927) Clostridium tetani E88, complete genome. 34 0.70 21
>(AC117176) Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. Length = 182871
Score = 1120 bits (565), Expect(2) = 0.0 Identities = 565/565 (100%) Strand = Plus / Minus
Query: 1 caagggatcccatccactgatttcctacgttcaagaaacattgcgtctctatcagataga 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 166478 caagggatcccatccactgatttcctacgttcaagaaacattgcgtctctatcagataga 166419
Query: 61 gtacgatttggcaagtgaattatttggcaaccaatatcaattgattctcgacgaaatcat 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 166418 gtacgatttggcaagtgaattatttggcaaccaatatcaattgattctcgacgaaatcat 166359
Query: 121 tgaccctgcccatgaactactcttggaaaccactgaaccaatcattaaagtaagaaaaac 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 166358 tgaccctgcccatgaactactcttggaaaccactgaaccaatcattaaagtaagaaaaac 166299
Query: 181 gcctggtgataaaatcttcagtattttcccattactagatctattcgatacttttactaa 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 166298 gcctggtgataaaatcttcagtattttcccattactagatctattcgatacttttactaa 166239
Query: 241 actattaccagactttatcactgcaatcagttcaagagatggtaaacatattagtgaatt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 166238 actattaccagactttatcactgcaatcagttcaagagatggtaaacatattagtgaatt 166179
Query: 301 aaaaactcaaattaaacatttacaagatacttgtgcctctctattagatttctcattgga 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 166178 aaaaactcaaattaaacatttacaagatacttgtgcctctctattagatttctcattgga 166119
Query: 361 tgaagaaaaagaaatttcaagttcaaatagaaaagaaatcatctctgatgcaactgttga 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 166118 tgaagaaaaagaaatttcaagttcaaatagaaaagaaatcatctctgatgcaactgttga 166059
Query: 421 tgaaatctcttcaaatatgatcaattattttaaacgtttaattgaatataaacattctgt 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 166058 tgaaatctcttcaaatatgatcaattattttaaacgtttaattgaatataaacattctgt 165999
Query: 481 tgaattattattaaaaggtcaagataataataatagtaacagcaatagtaatgcaccatc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 165998 tgaattattattaaaaggtcaagataataataatagtaacagcaatagtaatgcaccatc 165939
Query: 541 atcaacctcttcaaatagtaaatct 565 ||||||||||||||||||||||||| Sbjct: 165938 atcaacctcttcaaatagtaaatct 165914
Score = 668 bits (337), Expect(2) = 0.0 Identities = 337/337 (100%) Strand = Plus / Minus
Query: 596 aattctgcatcttcaacaatattacctacatcatttattggtttcttagaaaagatatta 655 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 165883 aattctgcatcttcaacaatattacctacatcatttattggtttcttagaaaagatatta 165824
Query: 656 aaaaatttaattaaatatttacaaggtagagcgaaaaaagattttccaactcaacctgca 715 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 165823 aaaaatttaattaaatatttacaaggtagagcgaaaaaagattttccaactcaacctgca 165764
Query: 716 actgatttctttaaaccaccaattaaatctgtaatttttcaaattaataattatcattat 775 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 165763 actgatttctttaaaccaccaattaaatctgtaatttttcaaattaataattatcattat 165704
Query: 776 atttcaacctctttaaaacaatctaaaatcttatcgaatcaacaatttgaaaataatgaa 835 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 165703 atttcaacctctttaaaacaatctaaaatcttatcgaatcaacaatttgaaaataatgaa 165644
Query: 836 ttggcgagtgcaaatcatatactacatgaatttgaaacttgtttagataatgaaattaaa 895 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 165643 ttggcgagtgcaaatcatatactacatgaatttgaaacttgtttagataatgaaattaaa 165584
Query: 896 gttttaaattcattttggaaaactatagctgatattt 932 ||||||||||||||||||||||||||||||||||||| Sbjct: 165583 gttttaaattcattttggaaaactatagctgatattt 165547
Score = 232 bits (117), Expect(4) = 2e-98 Identities = 117/117 (100%) Strand = Plus / Minus
Query: 1123 gtgcagattagaaaaaattcatttagaaaagaattttgttccatttgagacaaccgatga 1182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 165055 gtgcagattagaaaaaattcatttagaaaagaattttgttccatttgagacaaccgatga 164996
Query: 1183 tattaatagaaaacttgatagagtttttgattcacaataagaaaaacaataaattta 1239 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 164995 tattaatagaaaacttgatagagtttttgattcacaataagaaaaacaataaattta 164939
Score = 174 bits (88), Expect(4) = 2e-98 Identities = 88/88 (100%) Strand = Plus / Minus
Query: 1037 gatataccagaccaagaattaaaattgaaattaaaaaccgaagctaaaaatataattggg 1096 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 165298 gatataccagaccaagaattaaaattgaaattaaaaaccgaagctaaaaatataattggg 165239
Query: 1097 agatcttatgatcaatttaaagaattgt 1124 |||||||||||||||||||||||||||| Sbjct: 165238 agatcttatgatcaatttaaagaattgt 165211
Score = 34.2 bits (17), Expect(4) = 2e-98 Identities = 17/17 (100%) Strand = Plus / Minus
Query: 655 aaaaaatttaattaaat 671 ||||||||||||||||| Sbjct: 168084 aaaaaatttaattaaat 168068
Score = 30.2 bits (15), Expect(4) = 2e-98 Identities = 15/15 (100%) Strand = Plus / Minus
Query: 479 gttgaattattatta 493 ||||||||||||||| Sbjct: 175734 gttgaattattatta 175720
Score = 34.2 bits (17), Expect(12) = 0.052 Identities = 20/21 (95%) Strand = Plus / Minus
Query: 756 aaattaataattatcattata 776 |||||||||||||| |||||| Sbjct: 40040 aaattaataattattattata 40020
Score = 34.2 bits (17), Expect(12) = 0.052 Identities = 20/21 (95%) Strand = Plus / Minus
Query: 512 aatagtaacagcaatagtaat 532 |||||||| |||||||||||| Sbjct: 143088 aatagtaatagcaatagtaat 143068
Score = 30.2 bits (15), Expect(12) = 0.052 Identities = 15/15 (100%) Strand = Plus / Minus
Query: 806 ttatcgaatcaacaa 820 ||||||||||||||| Sbjct: 23705 ttatcgaatcaacaa 23691
Score = 30.2 bits (15), Expect(12) = 0.052 Identities = 15/15 (100%) Strand = Plus / Minus
Query: 648 agatattaaaaaatt 662 ||||||||||||||| Sbjct: 52192 agatattaaaaaatt 52178
Score = 28.2 bits (14), Expect(12) = 0.052 Identities = 14/14 (100%) Strand = Plus / Minus
Query: 484 attattattaaaag 497 |||||||||||||| Sbjct: 155171 attattattaaaag 155158
Score = 28.2 bits (14), Expect(12) = 0.052 Identities = 14/14 (100%) Strand = Plus / Minus
Query: 425 atctcttcaaatat 438 |||||||||||||| Sbjct: 163518 atctcttcaaatat 163505
Score = 26.3 bits (13), Expect(12) = 0.052 Identities = 13/13 (100%) Strand = Plus / Minus
Query: 883 taatgaaattaaa 895 ||||||||||||| Sbjct: 14943 taatgaaattaaa 14931
Score = 26.3 bits (13), Expect(12) = 0.052 Identities = 13/13 (100%) Strand = Plus / Minus
Query: 795 aatctaaaatctt 807 ||||||||||||| Sbjct: 35939 aatctaaaatctt 35927
Score = 26.3 bits (13), Expect(12) = 0.052 Identities = 16/17 (94%) Strand = Plus / Minus
Query: 659 aatttaattaaatattt 675 ||||| ||||||||||| Sbjct: 45299 aattttattaaatattt 45283
Score = 26.3 bits (13), Expect(12) = 0.052 Identities = 13/13 (100%) Strand = Plus / Minus
Query: 630 ttattggtttctt 642 ||||||||||||| Sbjct: 101220 ttattggtttctt 101208
Score = 26.3 bits (13), Expect(12) = 0.052 Identities = 13/13 (100%) Strand = Plus / Minus
Query: 504 ataataataatag 516 ||||||||||||| Sbjct: 143117 ataataataatag 143105
Score = 26.3 bits (13), Expect(12) = 0.052 Identities = 13/13 (100%) Strand = Plus / Minus
Query: 355 attggatgaagaa 367 ||||||||||||| Sbjct: 168162 attggatgaagaa 168150
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,612,231,422 Number of extensions: 110446275 Number of successful extensions: 9793994 Number of sequences better than 10.0: 429 Length of query: 1239 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1215 Effective length of database: 97,308,875,965 Effective search space: 118230284297475 Effective search space used: 118230284297475 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7. 9 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
3 |
VF (FL, S) |
0 |
AH (FL, L) |
1 |
AF (FL, S) |
0 |
SL (DIR, L) |
1 |
SS (DIR, S) |
0 |
SH (FL, L) |
1 |
SF (FL, S) |
0 |
CH (FL, L) |
2 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |