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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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Contig-U14105-1
Contig ID Contig-U14105-1
Contig update 2002.12.18
Contig sequence 
>Contig-U14105-1 (Contig-U14105-1Q) /CSM_Contig/Contig-U14105-1Q.Seq.d
NNNNNNNNNNTTCGTNTCATTCGTAACTTTAAACAACAAGTCGATAGTGG
TGTCATCAGTTTGGATGAAAATAAATGGATTGCAATTGGTTCAAAGATTT
TCACCTNTGTCAGTGAAACCATCAAAGCTTTGNCCGATATCNAATTGGCC
GATCTTAGCTTTAGATTATACCTTCAAGCACTCCAAACCTTTGACCACTG
TGGTTTGGTCTCTCGTGTCAAAGAATTGGCCATCAAGGCTCTCTTAATCT
TCCAAGAAGATATCGCCGATTTCNAAGCTCAAGTTATGGCCCTTCAATTG
TTAATCTANACTTTCAATTGATTTCATCATTCAAAATTTCATCATTCAAA
ACTCATCTCTACTTGTTCACATTTATTCTGGGTTGATAATCCTTCTCGTC
AATATCAAAATCCAGACTNTGTATTACAAGCTCTCAAAAAAGCTCTCTCC
ATTATCAGTAATGAATCGAGTCCTGGTCTTGGTACANCNTGTTGACATTT
TGAATGAATGTCTCTTCTATTGTGATAAANAAACTGATGCTGTTCCAATT
CAATTCGTTTCAGATTTGGTTGAATTAATTCGTACTACTCATGTTAAAGA
AGCTGATCCAGCATTACCATATTTACAAAATACTATCAAATACATTCAAT
CTCAAAACTATAAAG
Gap no gap
Contig length 665
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 2664284
End point 2664939
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U14105
List of clone(s) 

est1=AHK818Z,1,656
Translated Amino Acid sequence 
xxxfvsfvtlnnksivvssvwmkinglqlvqrfspxsvkpsklxpisnwpilaldytfkh
skplttvvwslvsknwpsrls*sskkispisklklwpfnc*SXLSIDFIIQNFIIQNSSL
LVHIYSGLIILLVNIKIQTXYYKLSKKLSPLSVMNRVLVLVXXVDILNECLFYCDKXTDA
VPIQFVSDLVELIRTTHVKEADPALPYLQNTIKYIQSQNYK
Translated Amino Acid sequence (All Frames) 
Frame A:
xxxxrxirnfkqqvdsgvisldenkwiaigskiftxvsetikalxdixladlsfrlylqa
lqtfdhcglvsrvkelaikallifqediadfxaqvmalqllixtfn*fhhskfhhsklis
tcshlfwvdnpsrqyqnpdxvlqalkkalsiisnesspglgtxc*hfe*mslll**xn*c
csnsirfrfg*insyysc*rs*ssitiftkyyqihsiskl*


Frame B:
xxxfvsfvtlnnksivvssvwmkinglqlvqrfspxsvkpsklxpisnwpilaldytfkh
skplttvvwslvsknwpsrls*sskkispisklklwpfnc*SXLSIDFIIQNFIIQNSSL
LVHIYSGLIILLVNIKIQTXYYKLSKKLSPLSVMNRVLVLVXXVDILNECLFYCDKXTDA
VPIQFVSDLVELIRTTHVKEADPALPYLQNTIKYIQSQNYK


Frame C:
xxxsxhs*l*ttsr*wchqfg*k*mdcnwfkdfhlcq*nhqsfxryxigrs*l*iipsst
pnl*plwfglscqrighqgslnlprryrrfxsssygpsivnlxfqlissfkissfkthly
lftfilg**sfssisksrlcitssqksslhyq**ieswswyxxltf*mnvssivixklml
fqfnsfqiwln*fvllmlkkliqhyhiykilsntfnlktik
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U14105-1 (Contig-U14105-1Q)
/CSM_Contig/Contig-U14105-1Q.Seq.d
         (665 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U14105-1 (Contig-U14105-1Q) /CSM_Contig/Conti...  1239  0.0
Contig-U04326-1 (Contig-U04326-1Q) /CSM_Contig/Conti...    38  0.012
Contig-U05415-1 (Contig-U05415-1Q) /CSM_Contig/Conti...    34  0.18
Contig-U01196-1 (Contig-U01196-1Q) /CSM_Contig/Conti...    34  0.18
Contig-U14691-1 (Contig-U14691-1Q) /CSM_Contig/Conti...    32  0.73
Contig-U14499-1 (Contig-U14499-1Q) /CSM_Contig/Conti...    32  0.73
Contig-U14343-1 (Contig-U14343-1Q) /CSM_Contig/Conti...    32  0.73
Contig-U13899-1 (Contig-U13899-1Q) /CSM_Contig/Conti...    32  0.73
Contig-U13851-1 (Contig-U13851-1Q) /CSM_Contig/Conti...    32  0.73
Contig-U12066-1 (Contig-U12066-1Q) /CSM_Contig/Conti...    32  0.73

>Contig-U14105-1 (Contig-U14105-1Q) /CSM_Contig/Contig-U14105-1Q.Seq.d
          Length = 665

 Score = 1239 bits (625), Expect = 0.0
 Identities = 655/655 (100%)
 Strand = Plus / Plus

                                                                       
Query: 11  ttcgtntcattcgtaactttaaacaacaagtcgatagtggtgtcatcagtttggatgaaa 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11  ttcgtntcattcgtaactttaaacaacaagtcgatagtggtgtcatcagtttggatgaaa 70

                                                                       
Query: 71  ataaatggattgcaattggttcaaagattttcacctntgtcagtgaaaccatcaaagctt 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71  ataaatggattgcaattggttcaaagattttcacctntgtcagtgaaaccatcaaagctt 130

                                                                       
Query: 131 tgnccgatatcnaattggccgatcttagctttagattataccttcaagcactccaaacct 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 tgnccgatatcnaattggccgatcttagctttagattataccttcaagcactccaaacct 190

                                                                       
Query: 191 ttgaccactgtggtttggtctctcgtgtcaaagaattggccatcaaggctctcttaatct 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 ttgaccactgtggtttggtctctcgtgtcaaagaattggccatcaaggctctcttaatct 250

                                                                       
Query: 251 tccaagaagatatcgccgatttcnaagctcaagttatggcccttcaattgttaatctana 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tccaagaagatatcgccgatttcnaagctcaagttatggcccttcaattgttaatctana 310

                                                                       
Query: 311 ctttcaattgatttcatcattcaaaatttcatcattcaaaactcatctctacttgttcac 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ctttcaattgatttcatcattcaaaatttcatcattcaaaactcatctctacttgttcac 370

                                                                       
Query: 371 atttattctgggttgataatccttctcgtcaatatcaaaatccagactntgtattacaag 430
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 atttattctgggttgataatccttctcgtcaatatcaaaatccagactntgtattacaag 430

                                                                       
Query: 431 ctctcaaaaaagctctctccattatcagtaatgaatcgagtcctggtcttggtacancnt 490
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ctctcaaaaaagctctctccattatcagtaatgaatcgagtcctggtcttggtacancnt 490

                                                                       
Query: 491 gttgacattttgaatgaatgtctcttctattgtgataaanaaactgatgctgttccaatt 550
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gttgacattttgaatgaatgtctcttctattgtgataaanaaactgatgctgttccaatt 550

                                                                       
Query: 551 caattcgtttcagatttggttgaattaattcgtactactcatgttaaagaagctgatcca 610
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 caattcgtttcagatttggttgaattaattcgtactactcatgttaaagaagctgatcca 610

                                                                  
Query: 611 gcattaccatatttacaaaatactatcaaatacattcaatctcaaaactataaag 665
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gcattaccatatttacaaaatactatcaaatacattcaatctcaaaactataaag 665


>Contig-U04326-1 (Contig-U04326-1Q) /CSM_Contig/Contig-U04326-1Q.Seq.d
          Length = 401

 Score = 38.2 bits (19), Expect = 0.012
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 619 atatttacaaaatactatcaaat 641
           |||||| ||||||||||||||||
Sbjct: 95  atatttgcaaaatactatcaaat 117


>Contig-U05415-1 (Contig-U05415-1Q) /CSM_Contig/Contig-U05415-1Q.Seq.d
          Length = 434

 Score = 34.2 bits (17), Expect = 0.18
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                
Query: 612 cattaccatatttacaaaata 632
           |||||||| ||||||||||||
Sbjct: 169 cattaccaaatttacaaaata 189


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5942
Number of Sequences: 6905
Number of extensions: 5942
Number of successful extensions: 505
Number of sequences better than 10.0: 48
length of query: 665
length of database: 5,674,871
effective HSP length: 16
effective length of query: 649
effective length of database: 5,564,391
effective search space: 3611289759
effective search space used: 3611289759
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.18
Homology vs DNA 
Query= Contig-U14105-1 (Contig-U14105-1Q) /CSM_Contig/Contig-U14105-1Q.Seq.d
         (665 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ353956) Dictyostelium discoideum cDNA clone:dda52d06, 3' ...  1239   0.0    1
(BJ356258) Dictyostelium discoideum cDNA clone:dda59c21, 3' ...   603   0.0    3
(BJ353199) Dictyostelium discoideum cDNA clone:dda49f11, 3' ...   601   0.0    2
(BJ446646) Dictyostelium discoideum cDNA clone:ddv63k10, 3' ...   583   0.0    2
(BJ443345) Dictyostelium discoideum cDNA clone:ddv52k16, 3' ...   559   0.0    3
(BJ442515) Dictyostelium discoideum cDNA clone:ddv50j04, 3' ...   559   0.0    3
(BJ442084) Dictyostelium discoideum cDNA clone:ddv48e21, 3' ...   559   0.0    3
(BJ380523) Dictyostelium discoideum cDNA clone:ddc38o11, 3' ...   559   0.0    3
(BJ348056) Dictyostelium discoideum cDNA clone:dda32e05, 3' ...   559   0.0    3
(BJ441349) Dictyostelium discoideum cDNA clone:ddv46o07, 3' ...   555   0.0    3
(BJ444469) Dictyostelium discoideum cDNA clone:ddv56p11, 3' ...   553   0.0    4
(BJ372240) Dictyostelium discoideum cDNA clone:ddc11f24, 3' ...   553   0.0    3
(BJ357949) Dictyostelium discoideum cDNA clone:dda65c10, 3' ...   553   0.0    3
(BJ356516) Dictyostelium discoideum cDNA clone:dda60f16, 3' ...   553   0.0    3
(BJ352355) Dictyostelium discoideum cDNA clone:dda46a17, 3' ...   553   0.0    3
(BJ442047) Dictyostelium discoideum cDNA clone:ddv48n16, 3' ...   551   0.0    3
(BJ443856) Dictyostelium discoideum cDNA clone:ddv54i09, 3' ...   545   0.0    4
(BJ441334) Dictyostelium discoideum cDNA clone:ddv46k10, 3' ...   541   0.0    3
(BJ436472) Dictyostelium discoideum cDNA clone:ddv31d11, 3' ...   539   0.0    3
(BJ442307) Dictyostelium discoideum cDNA clone:ddv49p12, 3' ...   496   0.0    3
(BJ443557) Dictyostelium discoideum cDNA clone:ddv53f11, 3' ...   504   0.0    3
(BJ383847) Dictyostelium discoideum cDNA clone:ddc47n08, 3' ...   478   0.0    3
(BJ383527) Dictyostelium discoideum cDNA clone:ddc53h11, 3' ...   539   0.0    5
(BJ438135) Dictyostelium discoideum cDNA clone:ddv36p11, 3' ...   601   0.0    2
(BJ358031) Dictyostelium discoideum cDNA clone:dda65e15, 3' ...   339   0.0    4
(BJ343816) Dictyostelium discoideum cDNA clone:dda17e07, 3' ...   533   0.0    5
(BJ444392) Dictyostelium discoideum cDNA clone:ddv56a11, 3' ...   500   0.0    5
(BJ343858) Dictyostelium discoideum cDNA clone:dda17m12, 3' ...   454   0.0    3
(BJ429429) Dictyostelium discoideum cDNA clone:ddv3o09, 3' e...   502   0.0    5
(BJ442439) Dictyostelium discoideum cDNA clone:ddv49j24, 3' ...   583   0.0    2
(BJ444633) Dictyostelium discoideum cDNA clone:ddv57a05, 3' ...   456   0.0    4
(BJ439525) Dictyostelium discoideum cDNA clone:ddv40a22, 3' ...   458   0.0    5
(BJ436834) Dictyostelium discoideum cDNA clone:ddv32j09, 3' ...   391   0.0    3
(BJ351828) Dictyostelium discoideum cDNA clone:dda44a24, 3' ...   379   0.0    3
(BJ348175) Dictyostelium discoideum cDNA clone:dda32m07, 3' ...   377   0.0    3
(BJ436381) Dictyostelium discoideum cDNA clone:ddv31b04, 3' ...   375   0.0    4
(BJ355258) Dictyostelium discoideum cDNA clone:dda56a09, 3' ...   357   0.0    3
(BJ356789) Dictyostelium discoideum cDNA clone:dda61n12, 3' ...   335   0.0    3
(BJ440428) Dictyostelium discoideum cDNA clone:ddv43m13, 3' ...   335   0.0    3
(BJ440831) Dictyostelium discoideum cDNA clone:ddv44i23, 3' ...   295   0.0    3
(BJ439250) Dictyostelium discoideum cDNA clone:ddv39j20, 3' ...   567   0.0    2
(BJ444070) Dictyostelium discoideum cDNA clone:ddv55j06, 3' ...   404   e-154  3
(BJ386371) Dictyostelium discoideum cDNA clone:ddc58c02, 3' ...   553   e-153  1
(BJ445270) Dictyostelium discoideum cDNA clone:ddv58p24, 3' ...   327   e-146  2
(BJ438309) Dictyostelium discoideum cDNA clone:ddv37d16, 3' ...   309   e-135  4
(BJ440312) Dictyostelium discoideum cDNA clone:ddv43e10, 3' ...   238   e-128  3
(BJ406490) Dictyostelium discoideum cDNA clone:dds35n12, 3' ...   188   e-113  4
(AU053887) Dictyostelium discoideum slug cDNA, clone SLJ872.      327   e-104  2
(BJ390086) Dictyostelium discoideum cDNA clone:dds21j05, 5' ...   345   1e-90  1
(BJ411214) Dictyostelium discoideum cDNA clone:ddv3o09, 5' e...   230   5e-85  2
(BJ445692) Dictyostelium discoideum cDNA clone:ddv60f12, 3' ...   151   6e-60  3
(BJ440058) Dictyostelium discoideum cDNA clone:ddv42c14, 3' ...   133   3e-58  2
(BJ431782) Dictyostelium discoideum cDNA clone:ddv15f13, 3' ...   109   2e-55  4
(BJ443218) Dictyostelium discoideum cDNA clone:ddv52c08, 3' ...   157   1e-44  2
(BJ439456) Dictyostelium discoideum cDNA clone:ddv40c18, 3' ...   178   2e-40  1
(BJ445140) Dictyostelium discoideum cDNA clone:ddv58f14, 3' ...   159   9e-39  2
(BJ431844) Dictyostelium discoideum cDNA clone:ddv15d19, 3' ...   107   3e-38  3
(BJ416269) Dictyostelium discoideum cDNA clone:ddv25g17, 5' ...   159   2e-34  1
(BJ358889) Dictyostelium discoideum cDNA clone:ddc11f24, 5' ...   157   6e-34  1
(BJ352487) Dictyostelium discoideum cDNA clone:dda46m21, 3' ...   127   2e-33  2
(BJ339493) Dictyostelium discoideum cDNA clone:dda65e15, 5' ...   153   1e-32  1
(BJ405722) Dictyostelium discoideum cDNA clone:dds32p14, 3' ...   145   2e-30  1
(BJ440790) Dictyostelium discoideum cDNA clone:ddv44a24, 3' ...   111   3e-29  2
(BJ423265) Dictyostelium discoideum cDNA clone:ddv48j13, 5' ...   123   9e-24  1
(BJ423319) Dictyostelium discoideum cDNA clone:ddv48e21, 5' ...    58   4e-04  1
(BJ422104) Dictyostelium discoideum cDNA clone:ddv44i23, 5' ...    58   4e-04  1
(BJ390304) Dictyostelium discoideum cDNA clone:dds21n19, 5' ...    58   4e-04  1
(BJ368622) Dictyostelium discoideum cDNA clone:ddc47n08, 5' ...    58   4e-04  1
(BJ326650) Dictyostelium discoideum cDNA clone:dda17m12, 5' ...    58   4e-04  1
(EB223488) PEG002-C-104408-501 Normalized Pedal-Pleural Gang...    44   0.64   2
(EB238172) PEG003-C-223796-501 Normalized Pedal-Pleural Gang...    44   0.77   2
(BV555861) S222P62751RC8.T0 Karlien Pan troglodytes verus ST...    42   0.81   2
(BV531287) G591P622777RG6.T0 Clint Pan troglodytes verus STS...    42   0.89   2
(AM423433) Vitis vinifera contig VV78X174301.7, whole genome...    46   1.7    1
(AC114185) Rattus norvegicus clone CH230-230C11, *** SEQUENC...    46   1.7    1
(EI486601) PV_GBa0101B24.r PV_GBa Phaseolus vulgaris genomic...    46   1.7    1
(AC018905) Homo sapiens chromosome 21 clone RP11-332N17, WOR...    44   2.4    3
(AC139651) Rattus norvegicus clone CH230-165I3, WORKING DRAF...    36   5.2    4
(AP008207) Oryza sativa (japonica cultivar-group) genomic DN...    44   6.6    1
(AP003238) Oryza sativa Japonica Group genomic DNA, chromoso...    44   6.6    1
(AK066497) Oryza sativa Japonica Group cDNA clone:J013071N18...    44   6.6    1
(EA700876) Sequence 79755 from patent US 7365185.                  44   6.6    1
(AP001699) Homo sapiens genomic DNA, chromosome 21q, section...    44   6.6    1
(AP001604) Homo sapiens genomic DNA, chromosome 21, clone:KB...    44   6.6    1
(AC155037) Bos taurus clone CH240-31F9, WORKING DRAFT SEQUENCE.    44   6.6    1
(AP010172) Lotus japonicus genomic DNA, clone: LjT31M07, TM1...    44   6.6    1
(AC230804) Bos taurus clone CH240-498N17, WORKING DRAFT SEQU...    44   6.6    1
(AC224186) Bos taurus clone CH240-447F22, WORKING DRAFT SEQU...    44   6.6    1
(EJ627835) 1092963231562 Global-Ocean-Sampling_GS-29-01-01-1...    44   6.6    1
(EJ606313) 1092962010901 Global-Ocean-Sampling_GS-29-01-01-1...    44   6.6    1
(ED747755) GM_WBb0112J20.r GM_WBb Glycine max genomic clone ...    44   6.6    1
(BQ505954) EST613369 Generation of a set of potato cDNA clon...    44   6.6    1
(BQ505953) EST613368 Generation of a set of potato cDNA clon...    44   6.6    1
(BG594796) EST493474 cSTS Solanum tuberosum cDNA clone cSTS8...    44   6.6    1
(AB289650) Klebsiella pneumoniae capsular polysaccharides bi...    44   6.6    1
(AB289649) Raoultella planticola capsular polysaccharides bi...    44   6.6    1
(CG679516) ZMMBBb0313B24.f ZMMBBb Zea mays subsp. mays genom...    36   6.8    2

>(BJ353956) Dictyostelium discoideum cDNA clone:dda52d06, 3' end,
           single read.
          Length = 656

 Score = 1239 bits (625), Expect = 0.0
 Identities = 655/655 (100%)
 Strand = Plus / Minus


Query: 11  ttcgtntcattcgtaactttaaacaacaagtcgatagtggtgtcatcagtttggatgaaa 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 ttcgtntcattcgtaactttaaacaacaagtcgatagtggtgtcatcagtttggatgaaa 597


Query: 71  ataaatggattgcaattggttcaaagattttcacctntgtcagtgaaaccatcaaagctt 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ataaatggattgcaattggttcaaagattttcacctntgtcagtgaaaccatcaaagctt 537


Query: 131 tgnccgatatcnaattggccgatcttagctttagattataccttcaagcactccaaacct 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tgnccgatatcnaattggccgatcttagctttagattataccttcaagcactccaaacct 477


Query: 191 ttgaccactgtggtttggtctctcgtgtcaaagaattggccatcaaggctctcttaatct 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ttgaccactgtggtttggtctctcgtgtcaaagaattggccatcaaggctctcttaatct 417


Query: 251 tccaagaagatatcgccgatttcnaagctcaagttatggcccttcaattgttaatctana 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tccaagaagatatcgccgatttcnaagctcaagttatggcccttcaattgttaatctana 357


Query: 311 ctttcaattgatttcatcattcaaaatttcatcattcaaaactcatctctacttgttcac 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ctttcaattgatttcatcattcaaaatttcatcattcaaaactcatctctacttgttcac 297


Query: 371 atttattctgggttgataatccttctcgtcaatatcaaaatccagactntgtattacaag 430
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 atttattctgggttgataatccttctcgtcaatatcaaaatccagactntgtattacaag 237


Query: 431 ctctcaaaaaagctctctccattatcagtaatgaatcgagtcctggtcttggtacancnt 490
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 ctctcaaaaaagctctctccattatcagtaatgaatcgagtcctggtcttggtacancnt 177


Query: 491 gttgacattttgaatgaatgtctcttctattgtgataaanaaactgatgctgttccaatt 550
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 gttgacattttgaatgaatgtctcttctattgtgataaanaaactgatgctgttccaatt 117


Query: 551 caattcgtttcagatttggttgaattaattcgtactactcatgttaaagaagctgatcca 610
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 caattcgtttcagatttggttgaattaattcgtactactcatgttaaagaagctgatcca 57


Query: 611 gcattaccatatttacaaaatactatcaaatacattcaatctcaaaactataaag 665
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56  gcattaccatatttacaaaatactatcaaatacattcaatctcaaaactataaag 2

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 665,538,434
Number of extensions: 37853723
Number of successful extensions: 2657741
Number of sequences better than 10.0: 98
Length of query: 665
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 641
Effective length of database: 97,308,875,965
Effective search space: 62374989493565
Effective search space used: 62374989493565
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 9
Homology vs Protein 
Query= Contig-U14105-1 (Contig-U14105-1Q) /CSM_Contig/Contig-U14105-1Q.Seq.d
         (665 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54C24) RecName: Full=Vacuolar sorting protein 35;                   251   2e-94
AM425621_1(AM425621|pid:none) Vitis vinifera contig VV78X235801....    68   1e-14
AB368490_1(AB368490|pid:none) Arabidopsis thaliana VPS35 mRNA fo...    66   2e-14
AC149634_2(AC149634|pid:none) Medicago truncatula clone mth2-5i1...    65   2e-14
AK227620_1(AK227620|pid:none) Arabidopsis thaliana mRNA for vacu...    66   2e-14
E84556(E84556)probable vacuolar sorting-associated protein [impo...    69   2e-14
BT008553_1(BT008553|pid:none) Arabidopsis thaliana clone U50265 ...    69   2e-14
AC108906_23(AC108906|pid:none) Oryza sativa chromosome 3 BAC OSJ...    63   6e-14
T08858(T08858)vacuolar protein-sorting protein homolog A_TM017A0...    65   3e-13
BT061953_1(BT061953|pid:none) Zea mays full-length cDNA clone ZM...    61   3e-13
(Q9EQH3) RecName: Full=Vacuolar protein sorting-associated prote...    60   9e-12
AK166821_1(AK166821|pid:none) Mus musculus blastocyst blastocyst...    60   9e-12
BC169004_1(BC169004|pid:none) Rattus norvegicus vacuolar protein...    60   2e-11
AF175265_1(AF175265|pid:none) Homo sapiens vacuolar sorting prot...    60   3e-11
AK223218_1(AK223218|pid:none) Homo sapiens mRNA for vacuolar pro...    60   3e-11
CR857748_1(CR857748|pid:none) Pongo abelii mRNA; cDNA DKFZp468J2...    60   3e-11
CR926124_1(CR926124|pid:none) Pongo abelii mRNA; cDNA DKFZp459E1...    60   3e-11
AK023650_1(AK023650|pid:none) Homo sapiens cDNA FLJ13588 fis, cl...    60   3e-11
AL512769_1(AL512769|pid:none) Homo sapiens mRNA; cDNA DKFZp434E1...    60   3e-11
AB169708_1(AB169708|pid:none) Macaca fascicularis brain cDNA, cl...    59   1e-10
AL928906_3(AL928906|pid:none) Zebrafish DNA sequence from clone ...    59   8e-10
BC117573_1(BC117573|pid:none) Danio rerio zgc:136268, mRNA (cDNA...    59   8e-10
BT072172_1(BT072172|pid:none) Salmo salar clone ssal-rgf-514-377...    58   1e-09
BT059024_1(BT059024|pid:none) Salmo salar clone ssal-rgf-521-005...    57   3e-09
AY224552_1(AY224552|pid:none) Oryza sativa (japonica cultivar-gr...    56   1e-06
BC167336_1(BC167336|pid:none) Xenopus tropicalis vacuolar protei...    55   2e-06
AK229772_1(AK229772|pid:none) Arabidopsis thaliana mRNA for puta...    41   3e-06
BT015203_1(BT015203|pid:none) Drosophila melanogaster RE65032 fu...    46   9e-04
AY061234_1(AY061234|pid:none) Drosophila melanogaster LD17594 fu...    46   9e-04
AE013599_3561(AE013599|pid:none) Drosophila melanogaster chromos...    46   9e-04
AY803791_1(AY803791|pid:none) Reclinomonas americana vacuolar pr...    45   0.001
AY803790_1(AY803790|pid:none) Reclinomonas americana vacuolar pr...    42   0.012
AE017343_328(AE017343|pid:none) Cryptococcus neoformans var. neo...    42   0.016
CR382131_711(CR382131|pid:none) Yarrowia lipolytica strain CLIB1...    42   0.016
AM270368_16(AM270368|pid:none) Aspergillus niger contig An16c016...    39   0.11
AP007155_510(AP007155|pid:none) Aspergillus oryzae RIB40 genomic...    38   0.23
AE016818_240(AE016818|pid:none) Ashbya gossypii (= Eremothecium ...    36   1.2

>(Q54C24) RecName: Full=Vacuolar sorting protein 35;
          Length = 781

 Score =  251 bits (642), Expect(2) = 2e-94
 Identities = 139/179 (77%), Positives = 139/179 (77%), Gaps = 21/179 (11%)
 Frame = +1

Query: 13   RXIRNFKQQVDSGVISLDENKWIAIGSKIFTXVSETIKALXDIXLADLSFRLYLQALQTF 192
            R IRNFKQQVDSGVISLDENKWIAIGSKIFT VSETIKAL DI LADLSFRLYLQALQTF
Sbjct: 540  RFIRNFKQQVDSGVISLDENKWIAIGSKIFTFVSETIKALADIKLADLSFRLYLQALQTF 599

Query: 193  DHCGLVSRVKELAIKALLIFQEDIADFXAQVMALQLLIXTFN------------------ 318
            DHCGLVSRVKELAIKALLIFQEDIADF AQVMALQLLI T N
Sbjct: 600  DHCGLVSRVKELAIKALLIFQEDIADFKAQVMALQLLISTLNSLSIPNEEIYESLAAQTI 659

Query: 319  ---XXXXXXXXXXXLISTCSHLFWVDNPSRQYQNPDXVLQALKKALSIISNESSPGLGT 486
                          LISTCSHLFWVDNPSRQYQNPD VLQALKKALSIISNESSPGLGT
Sbjct: 660  KQASRLLLPQDQAKLISTCSHLFWVDNPSRQYQNPDSVLQALKKALSIISNESSPGLGT 718

 Score =  117 bits (294), Expect(2) = 2e-94
 Identities = 56/57 (98%), Positives = 56/57 (98%)
 Frame = +2

Query: 494 DILNECLFYCDKXTDAVPIQFVSDLVELIRTTHVKEADPALPYLQNTIKYIQSQNYK 664
           DILNECLFYCDK TDAVPIQFVSDLVELIRTTHVKEADPALPYLQNTIKYIQSQNYK
Sbjct: 721 DILNECLFYCDKETDAVPIQFVSDLVELIRTTHVKEADPALPYLQNTIKYIQSQNYK 777

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 892,143,322
Number of extensions: 13707073
Number of successful extensions: 29307
Number of sequences better than 10.0: 37
Number of HSP's gapped: 29302
Number of HSP's successfully gapped: 87
Length of query: 221
Length of database: 1,051,180,864
Length adjustment: 124
Effective length of query: 97
Effective length of database: 649,847,548
Effective search space: 63035212156
Effective search space used: 63035212156
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.75  gvh: 0.50  alm: 0.28  top: 0.77  tms: 0.07  mit: 0.33  mip: 0.10
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.10  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U14105-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0