Homology vs CSM-cDNA |
|
Homology vs DNA |
Query= Contig-U14103-1 (Contig-U14103-1Q) /CSM_Contig/Contig-U14103-1Q.Seq.d (364 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ354137) Dictyostelium discoideum cDNA clone:dda52k18, 3' ... 656 0.0 1 (M24578) Dictyostelium discoideum insertion elements DRE1a a... 103 4e-18 1 (AC200818) Triticum aestivum clone TAACSPALLhA_0961M03, *** ... 50 0.041 2 (AG749145) Macaca fuscata fuscata DNA, clone: MSB2-213A04_R,... 50 0.054 1 (DR085993) CAST063B05 cassava tuber Manihot esculenta cDNA c... 50 0.054 1 (CR956430) M.truncatula DNA sequence from clone MTH2-49I19 o... 48 0.22 1 (AC189341) Brassica rapa subsp. pekinensis clone KBrB041L12,... 48 0.22 1 (AC097635) Homo sapiens chromosome 3 clone RP11-263O21, comp... 48 0.22 1 (AC144314) Macaca mulatta clone CH250-271O22, *** SEQUENCING... 48 0.22 1 (AC069207) Homo sapiens chromosome 3 clone RP11-809O24, WORK... 48 0.22 1 (AC191182) Cavia porcellus clone CH234-323E13, WORKING DRAFT... 48 0.22 1 (AC022805) Homo sapiens clone RP11-444A4, WORKING DRAFT SEQU... 48 0.22 1 (DU274158) 1098421225988 CHORI-243 Ovis aries genomic clone ... 48 0.22 1 (DN564300) 90895095 Sea Urchin primary mesenchyme cell cDNA ... 48 0.22 1 (BY913108) Cryptomeria japonica cDNA clone: CMFL050_E01, 3'e... 48 0.22 1 (BY903789) Cryptomeria japonica cDNA clone: CMFL022_C12, 3'e... 48 0.22 1 (BP174453) Cryptomeria japonica mRNA, clone: CC1489R, 3'end,... 48 0.22 1 (AB011476) Arabidopsis thaliana genomic DNA, chromosome 5, P... 44 0.36 2 (AC019132) Homo sapiens chromosome 6 clone RP11-575G14, WORK... 38 0.42 5 (AC165755) Bos taurus clone CH240-163C23, WORKING DRAFT SEQU... 36 0.46 2 (AC225655) Muntiacus muntjak vaginalis clone CH244-320B4, WO... 44 0.67 2 (AX344559) Sequence 10 from Patent WO0200932. 34 0.69 6 (AC005962) Homo sapiens chromosome 17, clone hRPK.506_H_21, ... 42 0.77 4 (ED006931) MUGQ_CH252P091E12Sp6_CP129_044 CHORI-252 Vervet M... 42 0.80 2 (AC104559) Mus musculus chromosome 17 clone RP24-160C12 map ... 44 0.82 2 (CR387984) Zebrafish DNA sequence from clone DKEY-230E6 in l... 46 0.85 1 (BX928758) Zebrafish DNA sequence from clone DKEY-206M15 in ... 46 0.85 1 (AC183493) Brassica oleracea Contig B, complete sequence. 46 0.85 1 (AC006228) Genomic sequence for Arabidopsis thaliana BAC F5J... 46 0.85 1 (AC192413) Monodelphis domestica, clone XX-912G1, complete s... 46 0.85 1 (CU862025) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.85 1 (CU019665) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 0.85 1 (AC189422) Brassica rapa subsp. pekinensis clone KBrB063M21,... 46 0.85 1 (FH578037) CHO_OF4679xn14r1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 0.85 1 (DU983841) KBrH073E03R KBrH (HindIII) BAC library Brassica r... 46 0.85 1 (DU032923) 14599 Tomato HindIII BAC Library Solanum lycopers... 46 0.85 1 (CT016698) KBrH125F12 genomic clone, KBrH (HindIII) BAC libr... 46 0.85 1 (CC966392) BOIBM19TR BO_1.4_1.6_KB_nuc Brassica oleracea gen... 46 0.85 1 (AM537996) Paracentrotus lividus EST, clone MPMGp1171C17195Q... 36 0.94 2 (AC170546) Bos taurus clone CH240-228L15, WORKING DRAFT SEQU... 44 1.0 3 (AC193633) Zea mays chromosome 7 clone CH201-144E19; ZMMBBc0... 34 1.7 2 (U40800) Caenorhabditis elegans cosmid D2096, complete seque... 34 1.9 2 (AM473270) Vitis vinifera contig VV78X029754.2, whole genome... 32 2.2 2 (CG035448) PUIFX60TB ZM_0.6_1.0_KB Zea mays genomic clone ZM... 34 2.2 2 (CG035451) PUIFX60TD ZM_0.6_1.0_KB Zea mays genomic clone ZM... 34 2.3 2 (BX311691) AGENAE Rainbow trout multi-tissues - normalized +... 34 2.3 2 (AC020664) Homo sapiens chromosome 11 clone RP11-83E23, WORK... 34 2.3 5 (CG140798) PUFUN28TB ZM_0.6_1.0_KB Zea mays genomic clone ZM... 34 2.3 2 (CU672239) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 2.7 2 (AX347082) Sequence 2153 from Patent WO0200928. 38 2.8 3 (AC174979) Bos taurus clone CH240-119N21, WORKING DRAFT SEQU... 44 3.0 2 (BX510993) Zebrafish DNA sequence from clone DKEY-270L11 in ... 44 3.4 1 (AL627383) Zebrafish DNA sequence from clone RP71-1O18 in li... 44 3.4 1 (AC195267) Gallus gallus BAC clone CH261-128C17 from chromos... 44 3.4 1 (AC120779) Mus musculus strain C57BL/6J clone rp23-194d11 ma... 44 3.4 1 (AC105304) Mus musculus strain C57BL/6J clone rp23-71k5 map ... 44 3.4 1 (AP009360) Solanum lycopersicum genomic DNA, chromosome 8, c... 44 3.4 1 (AP009273) Solanum lycopersicum genomic DNA, chromosome 8, c... 44 3.4 1 (AP009264) Solanum lycopersicum genomic DNA, chromosome 8, c... 44 3.4 1 (AY691319) Aedes polynesiensis vitellogenin B (Vg-B) gene, p... 44 3.4 1 (AM287046) Enochrus quadripunctatus mitochondrial partial 12... 44 3.4 1 (AM287045) Enochrus testaceus mitochondrial partial 12S rRNA... 44 3.4 1 (AC099487) Homo sapiens chromosome 5 clone CTD-2340E1, compl... 44 3.4 1 (AC153329) Papio anubis clone RP41-432M23, WORKING DRAFT SEQ... 44 3.4 1 (AC152023) Papio anubis clone RP41-378C8, WORKING DRAFT SEQU... 44 3.4 1 (AC151017) Callithrix jacchus clone CH259-183M8, WORKING DRA... 44 3.4 1 (AC150543) Bos taurus clone CH240-382E19, WORKING DRAFT SEQU... 44 3.4 1 (AC150541) Bos taurus clone CH240-386B12, WORKING DRAFT SEQU... 44 3.4 1 (AC149184) Papio anubis clone RP41-393A12, WORKING DRAFT SEQ... 44 3.4 1 (AC094992) Rattus norvegicus clone CH230-6F3, *** SEQUENCING... 44 3.4 1 (AC027399) Homo sapiens chromosome 2 clone RP11-659P8 map 2,... 44 3.4 1 (AY881151) Solanum lycopersicum chromosome 10 clone BAC LE_H... 44 3.4 1 (AP007969) Lotus japonicus genomic DNA, chromosome 5, clone:... 44 3.4 1 (AC225536) Medicago truncatula clone mth2-65n18, WORKING DRA... 44 3.4 1 (AC219587) Bos taurus clone CH240-328I7, WORKING DRAFT SEQUE... 44 3.4 1 (AC219527) Bos taurus clone CH240-331E7, WORKING DRAFT SEQUE... 44 3.4 1 (AC214695) Chlorocebus aethiops clone CH252-176K12, WORKING ... 44 3.4 1 (AC211076) Solanum lycopersicum chromosome 6 clone C06HBa030... 44 3.4 1 (AC209490) Saimiri boliviensis boliviensis clone CH254-395C1... 44 3.4 1 (AC190371) Felis catus clone RP86-1C7, WORKING DRAFT SEQUENC... 44 3.4 1 (AC189832) Aotus nancymaae clone CH258-71N2, WORKING DRAFT S... 44 3.4 1 (AC186455) Callithrix jacchus clone CH259-368I22, WORKING DR... 44 3.4 1 (AC186124) Felis catus clone RP86-263O12, WORKING DRAFT SEQU... 44 3.4 1 (AC174310) Medicago truncatula clone mth2-144g8, WORKING DRA... 44 3.4 1 (AC170648) Bos taurus clone CH240-224D22, WORKING DRAFT SEQU... 44 3.4 1 (AC169844) Macaca mulatta clone CH250-3L11, WORKING DRAFT SE... 44 3.4 1 (BH159288) ENTSB26TF Entamoeba histolytica Sheared DNA Entam... 44 3.4 1 (BH154300) ENTTI24TF Entamoeba histolytica Sheared DNA Entam... 44 3.4 1 (AZ689000) ENTKB52TF Entamoeba histolytica Sheared DNA Entam... 44 3.4 1 (AZ687955) ENTHP59TF Entamoeba histolytica Sheared DNA Entam... 44 3.4 1 (FH157888) CHO_OF3132xi18r1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 3.4 1 (ER865475) PPTAP29TR Solanum tuberosum RHPOTKEY BAC ends Sol... 44 3.4 1 (ER834508) PPTI478TR Solanum tuberosum RHPOTKEY BAC ends Sol... 44 3.4 1 (ED696163) GM_WBb0035K02.f GM_WBb Glycine max genomic clone ... 44 3.4 1 (ED588588) SALK_048378.56.00.x Arabidopsis thaliana TDNA ins... 44 3.4 1 (DU941448) 369927 Tomato EcoRI BAC Library Solanum lycopersi... 44 3.4 1 (DU030764) 11947 Tomato HindIII BAC Library Solanum lycopers... 44 3.4 1 (CZ999036) 188584 Tomato MboI BAC Library Solanum lycopersic... 44 3.4 1 (CZ993210) 189464 Tomato MboI BAC Library Solanum lycopersic... 44 3.4 1 (CZ936926) 256298 Tomato EcoRI BAC Library Solanum lycopersi... 44 3.4 1
>(BJ354137) Dictyostelium discoideum cDNA clone:dda52k18, 3' end, single read. Length = 355
Score = 656 bits (331), Expect = 0.0 Identities = 331/331 (100%) Strand = Plus / Minus
Query: 34 ccaccacccaatattttacatatatttttaaaatgttaaattataattgtagaaaatata 93 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 332 ccaccacccaatattttacatatatttttaaaatgttaaattataattgtagaaaatata 273
Query: 94 aagtgtgccctcacgagagcctaacctttgatggtgctgtaaaagtacctcttaggtatt 153 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 272 aagtgtgccctcacgagagcctaacctttgatggtgctgtaaaagtacctcttaggtatt 213
Query: 154 tagaaatattgacagtaggggacaacttccctttatttactcaaggatgtaccaatgagt 213 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 212 tagaaatattgacagtaggggacaacttccctttatttactcaaggatgtaccaatgagt 153
Query: 214 gtaaagaaaagatgataaaaataacccaatatgtgtacaaatatcaatccaatgccttgt 273 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 152 gtaaagaaaagatgataaaaataacccaatatgtgtacaaatatcaatccaatgccttgt 93
Query: 274 gctggttcttcaacgacgccaagttaattagagataaaagtatcaccccaggctcatatc 333 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 92 gctggttcttcaacgacgccaagttaattagagataaaagtatcaccccaggctcatatc 33
Query: 334 tagattcattatcgggacgtggaaataaaaa 364 ||||||||||||||||||||||||||||||| Sbjct: 32 tagattcattatcgggacgtggaaataaaaa 2
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 444,922,347 Number of extensions: 28266739 Number of successful extensions: 2513756 Number of sequences better than 10.0: 150 Length of query: 364 Length of database: 95,242,211,685 Length adjustment: 23 Effective length of query: 341 Effective length of database: 93,106,754,628 Effective search space: 31749403328148 Effective search space used: 31749403328148 X1: 11 (21.8 bits) S2: 21 (42.1 bits)
|
Homology vs Protein |
|