Contig-U14103-1
Contig ID Contig-U14103-1
Contig update 2002.12.18
Contig sequence
>Contig-U14103-1 (Contig-U14103-1Q) /CSM_Contig/Contig-U14103-1Q.Seq.d
NNNNNNNNNNAAAAAAAAAAAAAAAAAAAANANCCACCACCCAATATTTT
ACATATATTTTTAAAATGTTAAATTATAATTGTAGAAAATATAAAGTGTG
CCCTCACGAGAGCCTAACCTTTGATGGTGCTGTAAAAGTACCTCTTAGGT
ATTTAGAAATATTGACAGTAGGGGACAACTTCCCTTTATTTACTCAAGGA
TGTACCAATGAGTGTAAAGAAAAGATGATAAAAATAACCCAATATGTGTA
CAAATATCAATCCAATGCCTTGTGCTGGTTCTTCAACGACGCCAAGTTAA
TTAGAGATAAAAGTATCACCCCAGGCTCATATCTAGATTCATTATCGGGA
CGTGGAAATAAAAA

Gap no gap
Contig length 364
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 1491139
End point 1490785
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U14103
List of clone(s)

est1=AHK670Z,1,355
Translated Amino Acid sequence
XXXKKKKKKXXTTQYFTYIFKMLNYNCRKYKVCPHESLTFDGAVKVPLRYLEILTVGDNF
PLFTQGCTNECKEKMIKITQYVYKYQSNALCWFFNDAKLIRDKSITPGSYLDSLSGRGNK


Translated Amino Acid sequence (All Frames)
Frame A:
xxxxkkkkkkxpppnilhiflkc*iiivenikcaltra*plmvl*kyllgi*ky*q*gtt
slyllkdvpmsvkkr**k*pnmctninpmpcagssttps*leikvspqahi*ihyrdvei
k


Frame B:
xxxkkkkkkxxhhpifyiyf*nvkl*l*ki*svpsrepnl*wccksts*vfrnidsrgql
pfiysrmyq*v*rkddknnpicvqisiqclvlvlqrrqvn*r*kyhprlisrfiigtwk*
k


Frame C:
XXXKKKKKKXXTTQYFTYIFKMLNYNCRKYKVCPHESLTFDGAVKVPLRYLEILTVGDNF
PLFTQGCTNECKEKMIKITQYVYKYQSNALCWFFNDAKLIRDKSITPGSYLDSLSGRGNK


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U14103-1 (Contig-U14103-1Q)
/CSM_Contig/Contig-U14103-1Q.Seq.d
(364 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U14103-1 (Contig-U14103-1Q) /CSM_Contig/Conti... 656 0.0
Contig-U09516-1 (Contig-U09516-1Q) /CSM_Contig/Conti... 42 4e-04
Contig-U11693-1 (Contig-U11693-1Q) /CSM_Contig/Conti... 36 0.025
Contig-U06277-1 (Contig-U06277-1Q) /CSM_Contig/Conti... 34 0.099
Contig-U04586-1 (Contig-U04586-1Q) /CSM_Contig/Conti... 34 0.099
Contig-U04342-1 (Contig-U04342-1Q) /CSM_Contig/Conti... 34 0.099
Contig-U14663-1 (Contig-U14663-1Q) /CSM_Contig/Conti... 32 0.39
Contig-U14121-1 (Contig-U14121-1Q) /CSM_Contig/Conti... 32 0.39
Contig-U14081-1 (Contig-U14081-1Q) /CSM_Contig/Conti... 32 0.39
Contig-U11759-1 (Contig-U11759-1Q) /CSM_Contig/Conti... 32 0.39

>Contig-U14103-1 (Contig-U14103-1Q) /CSM_Contig/Contig-U14103-1Q.Seq.d
Length = 364

Score = 656 bits (331), Expect = 0.0
Identities = 331/331 (100%)
Strand = Plus / Plus


Query: 34 ccaccacccaatattttacatatatttttaaaatgttaaattataattgtagaaaatata 93
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34 ccaccacccaatattttacatatatttttaaaatgttaaattataattgtagaaaatata 93


Query: 94 aagtgtgccctcacgagagcctaacctttgatggtgctgtaaaagtacctcttaggtatt 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 aagtgtgccctcacgagagcctaacctttgatggtgctgtaaaagtacctcttaggtatt 153


Query: 154 tagaaatattgacagtaggggacaacttccctttatttactcaaggatgtaccaatgagt 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 tagaaatattgacagtaggggacaacttccctttatttactcaaggatgtaccaatgagt 213


Query: 214 gtaaagaaaagatgataaaaataacccaatatgtgtacaaatatcaatccaatgccttgt 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 gtaaagaaaagatgataaaaataacccaatatgtgtacaaatatcaatccaatgccttgt 273


Query: 274 gctggttcttcaacgacgccaagttaattagagataaaagtatcaccccaggctcatatc 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gctggttcttcaacgacgccaagttaattagagataaaagtatcaccccaggctcatatc 333


Query: 334 tagattcattatcgggacgtggaaataaaaa 364
|||||||||||||||||||||||||||||||
Sbjct: 334 tagattcattatcgggacgtggaaataaaaa 364


>Contig-U09516-1 (Contig-U09516-1Q) /CSM_Contig/Contig-U09516-1Q.Seq.d
Length = 700

Score = 42.1 bits (21), Expect = 4e-04
Identities = 24/25 (96%)
Strand = Plus / Minus


Query: 44 atattttacatatatttttaaaatg 68
|||||||||||||| ||||||||||
Sbjct: 592 atattttacatatagttttaaaatg 568


>Contig-U11693-1 (Contig-U11693-1Q) /CSM_Contig/Contig-U11693-1Q.Seq.d
Length = 2080

Score = 36.2 bits (18), Expect = 0.025
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 220 aaaagatgataaaaataa 237
||||||||||||||||||
Sbjct: 1867 aaaagatgataaaaataa 1884


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4044
Number of Sequences: 6905
Number of extensions: 4044
Number of successful extensions: 427
Number of sequences better than 10.0: 141
length of query: 364
length of database: 5,674,871
effective HSP length: 16
effective length of query: 348
effective length of database: 5,564,391
effective search space: 1936408068
effective search space used: 1936408068
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.12.18
Homology vs DNA
Query= Contig-U14103-1 (Contig-U14103-1Q) /CSM_Contig/Contig-U14103-1Q.Seq.d
(364 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ354137) Dictyostelium discoideum cDNA clone:dda52k18, 3' ... 656 0.0 1
(M24578) Dictyostelium discoideum insertion elements DRE1a a... 103 4e-18 1
(AC200818) Triticum aestivum clone TAACSPALLhA_0961M03, *** ... 50 0.041 2
(AG749145) Macaca fuscata fuscata DNA, clone: MSB2-213A04_R,... 50 0.054 1
(DR085993) CAST063B05 cassava tuber Manihot esculenta cDNA c... 50 0.054 1
(CR956430) M.truncatula DNA sequence from clone MTH2-49I19 o... 48 0.22 1
(AC189341) Brassica rapa subsp. pekinensis clone KBrB041L12,... 48 0.22 1
(AC097635) Homo sapiens chromosome 3 clone RP11-263O21, comp... 48 0.22 1
(AC144314) Macaca mulatta clone CH250-271O22, *** SEQUENCING... 48 0.22 1
(AC069207) Homo sapiens chromosome 3 clone RP11-809O24, WORK... 48 0.22 1
(AC191182) Cavia porcellus clone CH234-323E13, WORKING DRAFT... 48 0.22 1
(AC022805) Homo sapiens clone RP11-444A4, WORKING DRAFT SEQU... 48 0.22 1
(DU274158) 1098421225988 CHORI-243 Ovis aries genomic clone ... 48 0.22 1
(DN564300) 90895095 Sea Urchin primary mesenchyme cell cDNA ... 48 0.22 1
(BY913108) Cryptomeria japonica cDNA clone: CMFL050_E01, 3'e... 48 0.22 1
(BY903789) Cryptomeria japonica cDNA clone: CMFL022_C12, 3'e... 48 0.22 1
(BP174453) Cryptomeria japonica mRNA, clone: CC1489R, 3'end,... 48 0.22 1
(AB011476) Arabidopsis thaliana genomic DNA, chromosome 5, P... 44 0.36 2
(AC019132) Homo sapiens chromosome 6 clone RP11-575G14, WORK... 38 0.42 5
(AC165755) Bos taurus clone CH240-163C23, WORKING DRAFT SEQU... 36 0.46 2
(AC225655) Muntiacus muntjak vaginalis clone CH244-320B4, WO... 44 0.67 2
(AX344559) Sequence 10 from Patent WO0200932. 34 0.69 6
(AC005962) Homo sapiens chromosome 17, clone hRPK.506_H_21, ... 42 0.77 4
(ED006931) MUGQ_CH252P091E12Sp6_CP129_044 CHORI-252 Vervet M... 42 0.80 2
(AC104559) Mus musculus chromosome 17 clone RP24-160C12 map ... 44 0.82 2
(CR387984) Zebrafish DNA sequence from clone DKEY-230E6 in l... 46 0.85 1
(BX928758) Zebrafish DNA sequence from clone DKEY-206M15 in ... 46 0.85 1
(AC183493) Brassica oleracea Contig B, complete sequence. 46 0.85 1
(AC006228) Genomic sequence for Arabidopsis thaliana BAC F5J... 46 0.85 1
(AC192413) Monodelphis domestica, clone XX-912G1, complete s... 46 0.85 1
(CU862025) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.85 1
(CU019665) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 0.85 1
(AC189422) Brassica rapa subsp. pekinensis clone KBrB063M21,... 46 0.85 1
(FH578037) CHO_OF4679xn14r1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 0.85 1
(DU983841) KBrH073E03R KBrH (HindIII) BAC library Brassica r... 46 0.85 1
(DU032923) 14599 Tomato HindIII BAC Library Solanum lycopers... 46 0.85 1
(CT016698) KBrH125F12 genomic clone, KBrH (HindIII) BAC libr... 46 0.85 1
(CC966392) BOIBM19TR BO_1.4_1.6_KB_nuc Brassica oleracea gen... 46 0.85 1
(AM537996) Paracentrotus lividus EST, clone MPMGp1171C17195Q... 36 0.94 2
(AC170546) Bos taurus clone CH240-228L15, WORKING DRAFT SEQU... 44 1.0 3
(AC193633) Zea mays chromosome 7 clone CH201-144E19; ZMMBBc0... 34 1.7 2
(U40800) Caenorhabditis elegans cosmid D2096, complete seque... 34 1.9 2
(AM473270) Vitis vinifera contig VV78X029754.2, whole genome... 32 2.2 2
(CG035448) PUIFX60TB ZM_0.6_1.0_KB Zea mays genomic clone ZM... 34 2.2 2
(CG035451) PUIFX60TD ZM_0.6_1.0_KB Zea mays genomic clone ZM... 34 2.3 2
(BX311691) AGENAE Rainbow trout multi-tissues - normalized +... 34 2.3 2
(AC020664) Homo sapiens chromosome 11 clone RP11-83E23, WORK... 34 2.3 5
(CG140798) PUFUN28TB ZM_0.6_1.0_KB Zea mays genomic clone ZM... 34 2.3 2
(CU672239) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 2.7 2
(AX347082) Sequence 2153 from Patent WO0200928. 38 2.8 3
(AC174979) Bos taurus clone CH240-119N21, WORKING DRAFT SEQU... 44 3.0 2
(BX510993) Zebrafish DNA sequence from clone DKEY-270L11 in ... 44 3.4 1
(AL627383) Zebrafish DNA sequence from clone RP71-1O18 in li... 44 3.4 1
(AC195267) Gallus gallus BAC clone CH261-128C17 from chromos... 44 3.4 1
(AC120779) Mus musculus strain C57BL/6J clone rp23-194d11 ma... 44 3.4 1
(AC105304) Mus musculus strain C57BL/6J clone rp23-71k5 map ... 44 3.4 1
(AP009360) Solanum lycopersicum genomic DNA, chromosome 8, c... 44 3.4 1
(AP009273) Solanum lycopersicum genomic DNA, chromosome 8, c... 44 3.4 1
(AP009264) Solanum lycopersicum genomic DNA, chromosome 8, c... 44 3.4 1
(AY691319) Aedes polynesiensis vitellogenin B (Vg-B) gene, p... 44 3.4 1
(AM287046) Enochrus quadripunctatus mitochondrial partial 12... 44 3.4 1
(AM287045) Enochrus testaceus mitochondrial partial 12S rRNA... 44 3.4 1
(AC099487) Homo sapiens chromosome 5 clone CTD-2340E1, compl... 44 3.4 1
(AC153329) Papio anubis clone RP41-432M23, WORKING DRAFT SEQ... 44 3.4 1
(AC152023) Papio anubis clone RP41-378C8, WORKING DRAFT SEQU... 44 3.4 1
(AC151017) Callithrix jacchus clone CH259-183M8, WORKING DRA... 44 3.4 1
(AC150543) Bos taurus clone CH240-382E19, WORKING DRAFT SEQU... 44 3.4 1
(AC150541) Bos taurus clone CH240-386B12, WORKING DRAFT SEQU... 44 3.4 1
(AC149184) Papio anubis clone RP41-393A12, WORKING DRAFT SEQ... 44 3.4 1
(AC094992) Rattus norvegicus clone CH230-6F3, *** SEQUENCING... 44 3.4 1
(AC027399) Homo sapiens chromosome 2 clone RP11-659P8 map 2,... 44 3.4 1
(AY881151) Solanum lycopersicum chromosome 10 clone BAC LE_H... 44 3.4 1
(AP007969) Lotus japonicus genomic DNA, chromosome 5, clone:... 44 3.4 1
(AC225536) Medicago truncatula clone mth2-65n18, WORKING DRA... 44 3.4 1
(AC219587) Bos taurus clone CH240-328I7, WORKING DRAFT SEQUE... 44 3.4 1
(AC219527) Bos taurus clone CH240-331E7, WORKING DRAFT SEQUE... 44 3.4 1
(AC214695) Chlorocebus aethiops clone CH252-176K12, WORKING ... 44 3.4 1
(AC211076) Solanum lycopersicum chromosome 6 clone C06HBa030... 44 3.4 1
(AC209490) Saimiri boliviensis boliviensis clone CH254-395C1... 44 3.4 1
(AC190371) Felis catus clone RP86-1C7, WORKING DRAFT SEQUENC... 44 3.4 1
(AC189832) Aotus nancymaae clone CH258-71N2, WORKING DRAFT S... 44 3.4 1
(AC186455) Callithrix jacchus clone CH259-368I22, WORKING DR... 44 3.4 1
(AC186124) Felis catus clone RP86-263O12, WORKING DRAFT SEQU... 44 3.4 1
(AC174310) Medicago truncatula clone mth2-144g8, WORKING DRA... 44 3.4 1
(AC170648) Bos taurus clone CH240-224D22, WORKING DRAFT SEQU... 44 3.4 1
(AC169844) Macaca mulatta clone CH250-3L11, WORKING DRAFT SE... 44 3.4 1
(BH159288) ENTSB26TF Entamoeba histolytica Sheared DNA Entam... 44 3.4 1
(BH154300) ENTTI24TF Entamoeba histolytica Sheared DNA Entam... 44 3.4 1
(AZ689000) ENTKB52TF Entamoeba histolytica Sheared DNA Entam... 44 3.4 1
(AZ687955) ENTHP59TF Entamoeba histolytica Sheared DNA Entam... 44 3.4 1
(FH157888) CHO_OF3132xi18r1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 3.4 1
(ER865475) PPTAP29TR Solanum tuberosum RHPOTKEY BAC ends Sol... 44 3.4 1
(ER834508) PPTI478TR Solanum tuberosum RHPOTKEY BAC ends Sol... 44 3.4 1
(ED696163) GM_WBb0035K02.f GM_WBb Glycine max genomic clone ... 44 3.4 1
(ED588588) SALK_048378.56.00.x Arabidopsis thaliana TDNA ins... 44 3.4 1
(DU941448) 369927 Tomato EcoRI BAC Library Solanum lycopersi... 44 3.4 1
(DU030764) 11947 Tomato HindIII BAC Library Solanum lycopers... 44 3.4 1
(CZ999036) 188584 Tomato MboI BAC Library Solanum lycopersic... 44 3.4 1
(CZ993210) 189464 Tomato MboI BAC Library Solanum lycopersic... 44 3.4 1
(CZ936926) 256298 Tomato EcoRI BAC Library Solanum lycopersi... 44 3.4 1

>(BJ354137) Dictyostelium discoideum cDNA clone:dda52k18, 3' end,
single read.
Length = 355

Score = 656 bits (331), Expect = 0.0
Identities = 331/331 (100%)
Strand = Plus / Minus


Query: 34 ccaccacccaatattttacatatatttttaaaatgttaaattataattgtagaaaatata 93
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ccaccacccaatattttacatatatttttaaaatgttaaattataattgtagaaaatata 273


Query: 94 aagtgtgccctcacgagagcctaacctttgatggtgctgtaaaagtacctcttaggtatt 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aagtgtgccctcacgagagcctaacctttgatggtgctgtaaaagtacctcttaggtatt 213


Query: 154 tagaaatattgacagtaggggacaacttccctttatttactcaaggatgtaccaatgagt 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 tagaaatattgacagtaggggacaacttccctttatttactcaaggatgtaccaatgagt 153


Query: 214 gtaaagaaaagatgataaaaataacccaatatgtgtacaaatatcaatccaatgccttgt 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 gtaaagaaaagatgataaaaataacccaatatgtgtacaaatatcaatccaatgccttgt 93


Query: 274 gctggttcttcaacgacgccaagttaattagagataaaagtatcaccccaggctcatatc 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 gctggttcttcaacgacgccaagttaattagagataaaagtatcaccccaggctcatatc 33


Query: 334 tagattcattatcgggacgtggaaataaaaa 364
|||||||||||||||||||||||||||||||
Sbjct: 32 tagattcattatcgggacgtggaaataaaaa 2

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 444,922,347
Number of extensions: 28266739
Number of successful extensions: 2513756
Number of sequences better than 10.0: 150
Length of query: 364
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 341
Effective length of database: 93,106,754,628
Effective search space: 31749403328148
Effective search space used: 31749403328148
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

protein update 2009. 7. 9
Homology vs Protein
Query= Contig-U14103-1 (Contig-U14103-1Q) /CSM_Contig/Contig-U14103-1Q.Seq.d
(364 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

CR767821_552(CR767821|pid:none) Ehrlichia ruminantium strain Wel... 33 2.4
BX908798_1926(BX908798|pid:none) Parachlamydia-related symbiont ... 33 3.1
AF547984_102(AF547984|pid:none) Adoxophyes orana granulovirus, c... 32 5.4
DQ489736_1383(DQ489736|pid:none) Leuconostoc citreum KM20, compl... 32 7.0

>CR767821_552(CR767821|pid:none) Ehrlichia ruminantium strain
Welgevonden, complete genome.
&CR925678_557(CR925678|pid:none)
Length = 1392

Score = 33.5 bits (75), Expect = 2.4
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Frame = -1

Query: 334 RYEPGVILLSLINLASLKNQHKALD*--YLYTYWVIF-IIFSLHSLVHP*VNKGKLSPTV 164
+Y G +LL + + N K +D Y YWVI+ I+ S H+L + G+L P++
Sbjct: 439 KYVSGRVLLLDEIVRYMNNNLKVIDSNKYFMNYWVIYYIVSSHHTLSLEFIKNGQLLPSI 498

Query: 163 NISKYLR 143
N+ + L+
Sbjct: 499 NVVQLLK 505

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 602,704,585
Number of extensions: 12632904
Number of successful extensions: 20392
Number of sequences better than 10.0: 4
Number of HSP's gapped: 20388
Number of HSP's successfully gapped: 4
Length of query: 121
Length of database: 1,051,180,864
Length adjustment: 87
Effective length of query: 34
Effective length of database: 769,600,231
Effective search space: 26166407854
Effective search space used: 26166407854
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)

PSORT

psg: 0.83 gvh: 0.31 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.35 mip: 0.05
nuc: 0.12 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
24.0 %: mitochondrial
20.0 %: nuclear
8.0 %: plasma membrane
4.0 %: peroxisomal

>> prediction for Contig-U14103-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0