>Contig-U14098-1 (Contig-U14098-1Q) /CSM_Contig/Contig-U14098-1Q.Seq.d
NNNNNNNNNNANTGAANGGCTTTTAATTANAATTTAAACNATTAGGTGNG
GGACNAAAACNACNAAAACAAAAATTNGCNGAANAACNAAAACNATTTCN
ACAATTTCAACAACAACAACAACAACAAGNAACTTNAAAATTTTTAACCT
NTGNTNAATTTGANGATAANANAACTTTCCNTAGNGGNATTAANACAAAN
ACCCCCTTTNCAAACNCAGC

est1=AHK139Z,1,211

xxxxxgf*LXFKXLGXGXKXXKQKXAEXXKXFXQFQQQQQQQXTXKFLTXXXFXDXXTFX
XGIXTXTPFXNX

Frame A:
xxxx*xafnxnlnx*vxdxnxxnknxxxnxnxfxnfnnnnnnkxlxnf*pxxnlxixxls
xxxlxqxppxqtq


Frame B:
xxxxexllixi*tirxgtkttktkixxxtktististtttttxnxkifnlxxi*x*xnfp
*xx*xkxplxkxs


Frame C:
xxxxxgf*LXFKXLGXGXKXXKQKXAEXXKXFXQFQQQQQQQXTXKFLTXXXFXDXXTFX
XGIXTXTPFXNX

Query= Contig-U14098-1 (Contig-U14098-1Q)
/CSM_Contig/Contig-U14098-1Q.Seq.d
         (220 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U14098-1 (Contig-U14098-1Q) /CSM_Contig/Conti...    98  5e-21
Contig-U13891-1 (Contig-U13891-1Q) /CSM_Contig/Conti...    28  3.6
Contig-U04628-1 (Contig-U04628-1Q) /CSM_Contig/Conti...    28  3.6

>Contig-U14098-1 (Contig-U14098-1Q) /CSM_Contig/Contig-U14098-1Q.Seq.d
          Length = 220

 Score = 97.6 bits (49), Expect = 5e-21
 Identities = 85/85 (100%)
 Strand = Plus / Plus

                                                                      
Query: 13 tgaanggcttttaattanaatttaaacnattaggtgngggacnaaaacnacnaaaacaaa 72
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tgaanggcttttaattanaatttaaacnattaggtgngggacnaaaacnacnaaaacaaa 72

                                   
Query: 73 aattngcngaanaacnaaaacnatt 97
          |||||||||||||||||||||||||
Sbjct: 73 aattngcngaanaacnaaaacnatt 97


 Score = 95.6 bits (48), Expect = 2e-20
 Identities = 90/90 (100%)
 Strand = Plus / Plus

                                                                       
Query: 131 aacttnaaaatttttaacctntgntnaatttgangataananaactttccntagnggnat 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 aacttnaaaatttttaacctntgntnaatttgangataananaactttccntagnggnat 190

                                         
Query: 191 taanacaaanaccccctttncaaacncagc 220
           ||||||||||||||||||||||||||||||
Sbjct: 191 taanacaaanaccccctttncaaacncagc 220


>Contig-U13891-1 (Contig-U13891-1Q) /CSM_Contig/Contig-U13891-1Q.Seq.d
          Length = 1355

 Score = 28.2 bits (14), Expect = 3.6
 Identities = 18/20 (90%)
 Strand = Plus / Plus

                               
Query: 56  aaaacnacnaaaacaaaaat 75
           ||||| || |||||||||||
Sbjct: 307 aaaacaacaaaaacaaaaat 326


>Contig-U04628-1 (Contig-U04628-1Q) /CSM_Contig/Contig-U04628-1Q.Seq.d
          Length = 359

 Score = 28.2 bits (14), Expect = 3.6
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 137 aaaatttttaacct 150
           ||||||||||||||
Sbjct: 349 aaaatttttaacct 336


 Score = 28.2 bits (14), Expect = 3.6
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 137 aaaatttttaacct 150
           ||||||||||||||
Sbjct: 299 aaaatttttaacct 286


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 545
Number of Sequences: 6905
Number of extensions: 545
Number of successful extensions: 97
Number of sequences better than 10.0: 3
length of query: 220
length of database: 5,674,871
effective HSP length: 15
effective length of query: 205
effective length of database: 5,571,296
effective search space: 1142115680
effective search space used: 1142115680
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)

Query= Contig-U14098-1 (Contig-U14098-1Q) /CSM_Contig/Contig-U14098-1Q.Seq.d
         (220 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ353787) Dictyostelium discoideum cDNA clone:dda51m09, 3' ...   111   2e-43  2

>(BJ353787) Dictyostelium discoideum cDNA clone:dda51m09, 3' end,
           single read.
          Length = 211

 Score =  111 bits (56), Expect(2) = 2e-43
 Identities = 95/95 (100%)
 Strand = Plus / Minus


Query: 13  tgaanggcttttaattanaatttaaacnattaggtgngggacnaaaacnacnaaaacaaa 72
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tgaanggcttttaattanaatttaaacnattaggtgngggacnaaaacnacnaaaacaaa 150


Query: 73  aattngcngaanaacnaaaacnatttcnacaattt 107
           |||||||||||||||||||||||||||||||||||
Sbjct: 149 aattngcngaanaacnaaaacnatttcnacaattt 115

 Score = 95.6 bits (48), Expect(2) = 2e-43
 Identities = 90/90 (100%)
 Strand = Plus / Minus


Query: 131 aacttnaaaatttttaacctntgntnaatttgangataananaactttccntagnggnat 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91  aacttnaaaatttttaacctntgntnaatttgangataananaactttccntagnggnat 32


Query: 191 taanacaaanaccccctttncaaacncagc 220
           ||||||||||||||||||||||||||||||
Sbjct: 31  taanacaaanaccccctttncaaacncagc 2

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 67,927,953
Number of extensions: 4440444
Number of successful extensions: 391383
Number of sequences better than 10.0: 1
Length of query: 220
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 197
Effective length of database: 93,106,754,628
Effective search space: 18342030661716
Effective search space used: 18342030661716
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

Query= Contig-U14098-1 (Contig-U14098-1Q) /CSM_Contig/Contig-U14098-1Q.Seq.d
         (220 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 63,137,778
Number of extensions: 1894628
Number of successful extensions: 7
Number of sequences better than 10.0: 0
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 0
Length of query: 73
Length of database: 1,051,180,864
Length adjustment: 44
Effective length of query: 29
Effective length of database: 908,772,268
Effective search space: 26354395772
Effective search space used: 26354395772
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 27 (15.0 bits)

 psg: 0.46  gvh: 0.48  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: vesicles of secretory system
	  4.0 %: vacuolar

>> prediction for Contig-U14098-1 is cyt