Contig-U14093-1 |
Contig ID |
Contig-U14093-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
no gap |
Contig length |
700 |
Chromosome number (1..6, M) |
1 |
Chromosome length |
4919822 |
Start point |
866696 |
End point |
866011 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
22 |
Number of EST |
25 |
Link to clone list |
U14093 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.12.18 |
Homology vs DNA |
Query= Contig-U14093-1 (Contig-U14093-1Q) /CSM_Contig/Contig-U14093-1Q.Seq.d (700 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AU263414) Dictyostelium discoideum vegetative cDNA clone:VS... 777 0.0 2 (AU262820) Dictyostelium discoideum vegetative cDNA clone:VS... 777 0.0 2 (AU038900) Dictyostelium discoideum slug cDNA, clone SSM118. 777 0.0 2 (C90529) Dictyostelium discoideum slug cDNA, clone SSI676. 777 0.0 3 (C90431) Dictyostelium discoideum slug cDNA, clone SSI478. 777 0.0 2 (BJ445010) Dictyostelium discoideum cDNA clone:ddv58l03, 3' ... 777 0.0 2 (BJ378404) Dictyostelium discoideum cDNA clone:ddc31g23, 3' ... 777 0.0 2 (BJ364469) Dictyostelium discoideum cDNA clone:ddc31g23, 5' ... 777 0.0 2 (BJ356165) Dictyostelium discoideum cDNA clone:dda59o12, 3' ... 777 0.0 2 (BJ353131) Dictyostelium discoideum cDNA clone:dda49g06, 3' ... 777 0.0 2 (BJ335139) Dictyostelium discoideum cDNA clone:dda49g06, 5' ... 777 0.0 2 (AU265409) Dictyostelium discoideum vegetative cDNA clone:VS... 773 0.0 2 (C93309) Dictyostelium discoideum slug cDNA, clone SSM608. 771 0.0 2 (AU265386) Dictyostelium discoideum vegetative cDNA clone:VS... 628 0.0 3 (BJ426176) Dictyostelium discoideum cDNA clone:ddv58l03, 5' ... 410 0.0 3 (BJ337930) Dictyostelium discoideum cDNA clone:dda59p12, 5' ... 369 0.0 4 (AU267944) Dictyostelium discoideum vegetative cDNA clone:VS... 535 0.0 4 (U55379) Dictyostelium discoideum calcium-binding protein CB... 430 0.0 4 (C92446) Dictyostelium discoideum slug cDNA, clone SSE554. 777 0.0 2 (AU265408) Dictyostelium discoideum vegetative cDNA clone:VS... 662 0.0 2 (AU038215) Dictyostelium discoideum slug cDNA, clone SSH426. 777 0.0 2 (AU264362) Dictyostelium discoideum vegetative cDNA clone:VS... 777 0.0 2 (AU264363) Dictyostelium discoideum vegetative cDNA clone:VS... 777 0.0 2 (C91904) Dictyostelium discoideum slug cDNA, clone SSC165. 777 0.0 2 (AU267943) Dictyostelium discoideum vegetative cDNA clone:VS... 541 0.0 2 (C92304) Dictyostelium discoideum slug cDNA, clone SSD437. 771 0.0 2 (C89657) Dictyostelium discoideum slug cDNA, clone SSA520. 775 0.0 1 (AU038404) Dictyostelium discoideum slug cDNA, clone SSH669. 498 e-136 1 (AU261665) Dictyostelium discoideum vegetative cDNA clone:VS... 309 8e-80 1 (AC225536) Medicago truncatula clone mth2-65n18, WORKING DRA... 32 0.004 9 (EJ627858) 1092963231585 Global-Ocean-Sampling_GS-29-01-01-1... 42 0.006 2 (ER605356) 1093016273542 Global-Ocean-Sampling_GS-36-01-01-2... 38 0.023 2 (EJ777413) 1093010050026 Global-Ocean-Sampling_GS-30-02-01-1... 38 0.023 2 (EJ746008) 1092962060483 Global-Ocean-Sampling_GS-30-02-01-1... 38 0.023 2 (BZ079335) llg32b08.b1 B.oleracea002 Brassica oleracea genom... 44 0.071 2 (EJ224184) 1092351337377 Global-Ocean-Sampling_GS-27-01-01-1... 40 0.14 3 (AC161529) Mus musculus chromosome 5, clone RP24-316L21, com... 48 0.45 1 (AC129608) Mus musculus BAC clone RP23-193A2 from chromosome... 48 0.45 1 (AC036146) Mus musculus chromosome 5, clone RP23-294A15, com... 48 0.45 1 (AC216915) Populus trichocarpa clone POP038-J17, complete se... 48 0.45 1 (AC184660) Strongylocentrotus purpuratus clone R3-1103E18, W... 48 0.45 1 (AC180740) Strongylocentrotus purpuratus clone R3-3082L24, W... 48 0.45 1 (AC180608) Strongylocentrotus purpuratus clone R3-3019F1, WO... 48 0.45 1 (AC177985) Strongylocentrotus purpuratus clone R3-1117M24, W... 48 0.45 1 (AC177244) Strongylocentrotus purpuratus clone R3-1034F15, W... 48 0.45 1 (DE610922) Bombyx mori genomic DNA, Fosmid clone:GBMFno275_f... 48 0.45 1 (DE370617) Bombyx mori genomic DNA, BAC clone:BET_630_K05. 48 0.45 1 (CR114812) Forward strand read from insert in 3'HPRT inserti... 48 0.45 1 (CR073365) Forward strand read from insert in 3'HPRT inserti... 48 0.45 1 (BG982213) CM4-CN0089-130201-726-h11 CN0089 Homo sapiens cDN... 48 0.45 1 (AC180249) Strongylocentrotus purpuratus clone R3-33B23, WOR... 42 0.53 2 (AC149007) Otolemur garnettii clone CH256-7G2, WORKING DRAFT... 34 0.93 2 (EV834048) TT1D557TV Tetrahymena thermophila SB210 cDNA libr... 36 1.2 2 (DY678553) TT1AO02TV Tetrahymena thermophila EST library str... 36 1.2 2 (EB324101) CNSN01-F-102059-501 Normalized CNS library (juven... 36 1.2 2 (EC301222) OVARYF089544C14 POSSUM_01-POSSUM-C-OVARY-2KB Tric... 36 1.2 2 (EJ254436) 1095349001269 Global-Ocean-Sampling_GS-27-01-01-1... 32 1.4 3 (AM285302) Spiroplasma citri GII3-3X chromosome, contig Cont... 44 1.4 4 (EU739515) Tinamus guttatus nonhistone chromosomal protein H... 46 1.8 1 (CT573860) Zebrafish DNA sequence from clone DKEY-189N21 in ... 46 1.8 1 (CR524823) Zebrafish DNA sequence from clone CH211-150A18 in... 46 1.8 1 (AC192803) Pan troglodytes BAC clone CH251-429M12 from chrom... 46 1.8 1 (AY452752) Pyrocoelia rufa isolate WH10 cytochrome oxidase s... 46 1.8 1 (AY452751) Pyrocoelia rufa isolate WH9 cytochrome oxidase su... 46 1.8 1 (AY452750) Pyrocoelia rufa isolate WH8 cytochrome oxidase su... 46 1.8 1 (AY452749) Pyrocoelia rufa isolate WH7 cytochrome oxidase su... 46 1.8 1 (AY452748) Pyrocoelia rufa isolate WH6 cytochrome oxidase su... 46 1.8 1 (AY452747) Pyrocoelia rufa isolate WH4 cytochrome oxidase su... 46 1.8 1 (AY452746) Pyrocoelia rufa isolate WH5 cytochrome oxidase su... 46 1.8 1 (AY452745) Pyrocoelia rufa isolate WH3 cytochrome oxidase su... 46 1.8 1 (AY452744) Pyrocoelia rufa isolate WH2 cytochrome oxidase su... 46 1.8 1 (AY452743) Pyrocoelia rufa isolate WH1 cytochrome oxidase su... 46 1.8 1 (AC006374) Homo sapiens BAC clone RP11-357D2 from 7, complet... 46 1.8 1 (AC220095) Bos taurus clone CH240-362H21, WORKING DRAFT SEQU... 46 1.8 1 (AC176256) Strongylocentrotus purpuratus clone R3-3060L22, W... 46 1.8 1 (AC173147) Bos taurus clone CH240-524B18, WORKING DRAFT SEQU... 46 1.8 1 (AC172454) Bos taurus clone CH240-170C12, WORKING DRAFT SEQU... 46 1.8 1 (AC164764) Bos taurus clone CH240-146O24, *** SEQUENCING IN ... 46 1.8 1 (EK575367) 1095521159040 Global-Ocean-Sampling_GS-32-01-01-1... 46 1.8 1 (EK554668) 1095516153393 Global-Ocean-Sampling_GS-32-01-01-1... 46 1.8 1 (EK553915) 1095516145743 Global-Ocean-Sampling_GS-32-01-01-1... 46 1.8 1 (EK527251) 1095515646960 Global-Ocean-Sampling_GS-32-01-01-1... 46 1.8 1 (EK502434) 1095505836209 Global-Ocean-Sampling_GS-32-01-01-1... 46 1.8 1 (EK485572) 1095469550474 Global-Ocean-Sampling_GS-32-01-01-1... 46 1.8 1 (EK305813) 1095462380908 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.8 1 (EJ939602) 1093018856948 Global-Ocean-Sampling_GS-30-02-01-1... 46 1.8 1 (EJ843866) 1093017845275 Global-Ocean-Sampling_GS-30-02-01-1... 46 1.8 1 (AM188247) Paracentrotus lividus EST, clone MPMGp1172G051Q, ... 46 1.8 1 (FE966012) PLATE_T3_022_G11_02DEC2004_083 Opium poppy elicit... 46 1.8 1 (FE965760) PLATE_T3_020_B03_30NOV2004_029 Opium poppy elicit... 46 1.8 1 (ET134628) TRPcgc805.1p1p2_p2.k_027 TRP PCR library Ovis ari... 42 2.2 2 (CR848742) Zebrafish DNA sequence from clone DKEY-181C1 in l... 38 2.4 3 (EF067920) Phaeodactylum tricornutum chloroplast, complete g... 34 2.7 6 (AC006730) Caenorhabditis elegans cosmid Y27F2A, complete se... 38 2.9 2 (AC113052) Mus musculus chromosome 5, clone RP23-250D22, com... 32 3.4 2 (AC022353) Mus musculus strain C57BL6/J chromosome 5 clone R... 32 3.4 2 (AC121572) Mus musculus BAC clone RP23-234P16 from 5, comple... 32 3.5 2 (AC174310) Medicago truncatula clone mth2-144g8, WORKING DRA... 32 3.7 6 (AL671935) Mouse DNA sequence from clone RP23-421J13 on chro... 36 4.0 4 (CR940310) M.truncatula DNA sequence from clone MTH2-5D8 on ... 42 4.3 3
>(AU263414) Dictyostelium discoideum vegetative cDNA clone:VSE834, 3' end single read. Length = 664
Score = 777 bits (392), Expect(2) = 0.0 Identities = 392/392 (100%) Strand = Plus / Plus
Query: 228 tccagagagaattgctgatttgcttttccgtgatgatactgataaaaatggtgaattaac 287 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 198 tccagagagaattgctgatttgcttttccgtgatgatactgataaaaatggtgaattaac 257
Query: 288 aattgaagaggccaaacttagaattgttagaatgaacgatgagaaaattgaaaaagtttt 347 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 258 aattgaagaggccaaacttagaattgttagaatgaacgatgagaaaattgaaaaagtttt 317
Query: 348 aaattgggatgttgaaaaatttattaatgataatgataaagatggtgatagaaaaattac 407 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 318 aaattgggatgttgaaaaatttattaatgataatgataaagatggtgatagaaaaattac 377
Query: 408 cagagatgaagttcttcaaagattcactgaacaaggtgctgaggatccagaacttattac 467 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 378 cagagatgaagttcttcaaagattcactgaacaaggtgctgaggatccagaacttattac 437
Query: 468 tgatagtatcttcagacaaatggatcttgaccgtgatggtgtaatcacctgtgatgaaat 527 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 438 tgatagtatcttcagacaaatggatcttgaccgtgatggtgtaatcacctgtgatgaaat 497
Query: 528 caaagaattcaacagaaagaagaaattcagtttccttaaatcatcagcaccaaaacaata 587 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 498 caaagaattcaacagaaagaagaaattcagtttccttaaatcatcagcaccaaaacaata 557
Query: 588 aaaaagaaacattacaaattcacccctttttg 619 |||||||||||||||||||||||||||||||| Sbjct: 558 aaaaagaaacattacaaattcacccctttttg 589
Score = 309 bits (156), Expect(2) = 0.0 Identities = 156/156 (100%) Strand = Plus / Plus
Query: 64 caaattcgaatagcaaaaatgtctgccacagtccactataaagatattagaaagggaatg 123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 34 caaattcgaatagcaaaaatgtctgccacagtccactataaagatattagaaagggaatg 93
Query: 124 gagaaagaccttgaaagtttgtttaaaaaatatgattcagaccgtaatggtaaaattacc 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 94 gagaaagaccttgaaagtttgtttaaaaaatatgattcagaccgtaatggtaaaattacc 153
Query: 184 tatattgaaatagtagaaacattgagaaaagctggt 219 |||||||||||||||||||||||||||||||||||| Sbjct: 154 tatattgaaatagtagaaacattgagaaaagctggt 189
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 778,918,888 Number of extensions: 50828589 Number of successful extensions: 4478237 Number of sequences better than 10.0: 187 Length of query: 700 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 676 Effective length of database: 97,308,875,965 Effective search space: 65780800152340 Effective search space used: 65780800152340 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7. 9 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
7 |
VH (FL, L) |
1 |
VF (FL, S) |
0 |
AH (FL, L) |
3 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
10 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
1 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |