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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U14091-1
Contig ID Contig-U14091-1
Contig update 2002.12.18
Contig sequence 
>Contig-U14091-1 (Contig-U14091-1Q) /CSM_Contig/Contig-U14091-1Q.Seq.d
TGGAAAAAAAAAAAAAAATTTGTTGTGAAGATCAAAATTTCTTTTTTTTT
CTTTTATTTTTTTTCTCAACAAATTATAGAATATATAAAAAATGAATAGA
CCACCACAAGACGTAGAATTTAAAGCTGGTAAAGCTAAATTAACAGGTAC
AACAGTAACATCAGATTCAAGAAAGGGTTACTTAAAATTTGGTGTTACAC
CAGAAGGATTAACATGTGTTCAATGGAGACCAAGAGATTCATCAGCATAT
GAAGATGAATTTTATTTTGCACCAGGTGAATCAAAATTTATCAAAGTACC
TGCATGTAAAACTGGTAGAATGTATTACTTAAACTTTTCAGGTTCAGATC
AAAAGGAATTCTATTGGTTACAAGAAGCAAATGTAGAAGGTGATGCTAAA
ATTGAAAAAGCACTTAAAGTTATTGAATCATATATTCCAGATGATGATGA
TGATGAAGAAATGGTAGTTGATACACCACCACCAACAACAACAATAAAAC
AAGAACCACCTAAAAACCCAACAATAAATGAAGTTTCACTAAGTCAACCA
AAACCAACTACAACTCCACCACCATCAGCAACCAATTTAGATTTTATTAA
AGATCTTTTTTCAAATTTACCAACACAACCAAAACAACCACAAATTACAT
TGGGTAAAATATTGACAGCAGAGAATTTAATACCATTCTTAAGAGAGAAT
CCAGAGATTAAAAAAGATTTAATTCAATATTTACCAGAGGAATATCAAAA
GGATGAGAATATGATTAATGAAGTTTTACATTCTGCTCAATTTTTACAAT
CAATTGAAACCTTAGATTATGCAATTCATGAAGGTCATGGTCCTGAAATT
GTCTCTCTTTTAGGTTATGAACCATCAATTGCTTCTCAAAGAGGTGTTGA
GGGTTTCTTAACAAATATTCAAGAAGGTACAAATAAAAAGAAAAATAATA
AATAATTAATTAAAATTGTATTATCAAAAATAAAAAAAAA
Gap no gap
Contig length 990
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 3741054
End point 3742045
Strand (PLUS/MINUS) PLUS
Number of clones 6
Number of EST 8
Link to clone list U14091
List of clone(s) 

est1=AHI882Z,1,530
est2=VSG203Z,67,618
est3=VSK136E,89,960
est4=VSI474F,95,652
est5=VSI474Z,103,629
est6=VSE419E,122,537
est7=VSF580F,789,991
est8=VSF580Z,789,976
Translated Amino Acid sequence 
gkkkknll*rskflffsfifflnkl*ni*KMNRPPQDVEFKAGKAKLTGTTVTSDSRKGY
LKFGVTPEGLTCVQWRPRDSSAYEDEFYFAPGESKFIKVPACKTGRMYYLNFSGSDQKEF
YWLQEANVEGDAKIEKALKVIESYIPDDDDDEEMVVDTPPPTTTIKQEPPKNPTINEVSL
SQPKPTTTPPPSATNLDFIKDLFSNLPTQPKQPQITLGKILTAENLIPFLRENPEIKKDL
IQYLPEEYQKDENMINEVLHSAQFLQSIETLDYAIHEGHGPEIVSLLGYEPSIASQRGVE
GFLTNIQEGTNKKKNNK*likivlskikk
Translated Amino Acid sequence (All Frames) 
Frame A:
wkkkkkfvvkikisffffyffsqqiieyikne*tttrrri*sw*s*inrynsnirfkkgl
lkiwcytrrinmcsmetkrfisi*r*ilfctr*ikiyqstcm*nw*nvllklfrfrskgi
llvtrskcrr*c*n*kst*sy*iiysr*****rngs*ytttnnnnktrtt*kpnnk*sft
kstktnynsttisnqfrfy*rsffkftnttktttnyig*nidsrefntilkresrd*krf
nsiftrgiskg*eyd**sftfcsiftin*nlrlcns*rsws*nclsfrl*tincfskrc*
gflnkysrryk*kek**iin*nciiknkkk


Frame B:
gkkkknll*rskflffsfifflnkl*ni*KMNRPPQDVEFKAGKAKLTGTTVTSDSRKGY
LKFGVTPEGLTCVQWRPRDSSAYEDEFYFAPGESKFIKVPACKTGRMYYLNFSGSDQKEF
YWLQEANVEGDAKIEKALKVIESYIPDDDDDEEMVVDTPPPTTTIKQEPPKNPTINEVSL
SQPKPTTTPPPSATNLDFIKDLFSNLPTQPKQPQITLGKILTAENLIPFLRENPEIKKDL
IQYLPEEYQKDENMINEVLHSAQFLQSIETLDYAIHEGHGPEIVSLLGYEPSIASQRGVE
GFLTNIQEGTNKKKNNK*likivlskikk


Frame C:
ekkkkiccedqnffffllfffstnyriykk*idhhkt*nlklvkln*qvqq*hqiqervt
*nlvlhqkd*hvfngdqeihqhmkmnfilhqvnqnlskylhvklvecit*tfqvqikrns
igykkqm*kvmlklkkhlkllnhifqmmmmmkkw*lihhhqqqq*nknhlktqq*mkfh*
vnqnqlqlhhhqqpi*illkiffqiyqhnqnnhklhwvky*qqri*yhs*eriqrlkki*
fniyqrnikrmri*lmkfyillnfynqlkp*imqfmkvmvlklslf*vmnhqlllkevlr
vs*qifkkvqikrkiinn*lklyyqk*kk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U14091-1 (Contig-U14091-1Q)
/CSM_Contig/Contig-U14091-1Q.Seq.d
         (990 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U14091-1 (Contig-U14091-1Q) /CSM_Contig/Conti...   940  0.0
Contig-U12631-1 (Contig-U12631-1Q) /CSM_Contig/Conti...    50  5e-06
Contig-U11587-1 (Contig-U11587-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U13393-1 (Contig-U13393-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U12503-1 (Contig-U12503-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U11933-1 (Contig-U11933-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U11503-1 (Contig-U11503-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U10723-1 (Contig-U10723-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U08887-1 (Contig-U08887-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U13195-1 (Contig-U13195-1Q) /CSM_Contig/Conti...    30  4.3

>Contig-U14091-1 (Contig-U14091-1Q) /CSM_Contig/Contig-U14091-1Q.Seq.d
          Length = 990

 Score =  940 bits (474), Expect = 0.0
 Identities = 474/474 (100%)
 Strand = Plus / Plus

                                                                       
Query: 457 agaaatggtagttgatacaccaccaccaacaacaacaataaaacaagaaccacctaaaaa 516
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 agaaatggtagttgatacaccaccaccaacaacaacaataaaacaagaaccacctaaaaa 516

                                                                       
Query: 517 cccaacaataaatgaagtttcactaagtcaaccaaaaccaactacaactccaccaccatc 576
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 cccaacaataaatgaagtttcactaagtcaaccaaaaccaactacaactccaccaccatc 576

                                                                       
Query: 577 agcaaccaatttagattttattaaagatcttttttcaaatttaccaacacaaccaaaaca 636
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 agcaaccaatttagattttattaaagatcttttttcaaatttaccaacacaaccaaaaca 636

                                                                       
Query: 637 accacaaattacattgggtaaaatattgacagcagagaatttaataccattcttaagaga 696
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 accacaaattacattgggtaaaatattgacagcagagaatttaataccattcttaagaga 696

                                                                       
Query: 697 gaatccagagattaaaaaagatttaattcaatatttaccagaggaatatcaaaaggatga 756
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 gaatccagagattaaaaaagatttaattcaatatttaccagaggaatatcaaaaggatga 756

                                                                       
Query: 757 gaatatgattaatgaagttttacattctgctcaatttttacaatcaattgaaaccttaga 816
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 gaatatgattaatgaagttttacattctgctcaatttttacaatcaattgaaaccttaga 816

                                                                       
Query: 817 ttatgcaattcatgaaggtcatggtcctgaaattgtctctcttttaggttatgaaccatc 876
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 ttatgcaattcatgaaggtcatggtcctgaaattgtctctcttttaggttatgaaccatc 876

                                                                 
Query: 877 aattgcttctcaaagaggtgttgagggtttcttaacaaatattcaagaaggtac 930
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 aattgcttctcaaagaggtgttgagggtttcttaacaaatattcaagaaggtac 930


 Score =  743 bits (375), Expect = 0.0
 Identities = 375/375 (100%)
 Strand = Plus / Plus

                                                                       
Query: 65  ctcaacaaattatagaatatataaaaaatgaatagaccaccacaagacgtagaatttaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  ctcaacaaattatagaatatataaaaaatgaatagaccaccacaagacgtagaatttaaa 124

                                                                       
Query: 125 gctggtaaagctaaattaacaggtacaacagtaacatcagattcaagaaagggttactta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gctggtaaagctaaattaacaggtacaacagtaacatcagattcaagaaagggttactta 184

                                                                       
Query: 185 aaatttggtgttacaccagaaggattaacatgtgttcaatggagaccaagagattcatca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 aaatttggtgttacaccagaaggattaacatgtgttcaatggagaccaagagattcatca 244

                                                                       
Query: 245 gcatatgaagatgaattttattttgcaccaggtgaatcaaaatttatcaaagtacctgca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gcatatgaagatgaattttattttgcaccaggtgaatcaaaatttatcaaagtacctgca 304

                                                                       
Query: 305 tgtaaaactggtagaatgtattacttaaacttttcaggttcagatcaaaaggaattctat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tgtaaaactggtagaatgtattacttaaacttttcaggttcagatcaaaaggaattctat 364

                                                                       
Query: 365 tggttacaagaagcaaatgtagaaggtgatgctaaaattgaaaaagcacttaaagttatt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tggttacaagaagcaaatgtagaaggtgatgctaaaattgaaaaagcacttaaagttatt 424

                          
Query: 425 gaatcatatattcca 439
           |||||||||||||||
Sbjct: 425 gaatcatatattcca 439


 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 19 tttgttgtgaagatcaaaatttc 41
          |||||||||||||||||||||||
Sbjct: 19 tttgttgtgaagatcaaaatttc 41


>Contig-U12631-1 (Contig-U12631-1Q) /CSM_Contig/Contig-U12631-1Q.Seq.d
          Length = 660

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 460 aatggtagttgatacaccaccaccaacaacaac 492
           ||||||||| ||||||||||||||| |||||||
Sbjct: 211 aatggtagtagatacaccaccaccaccaacaac 243


>Contig-U11587-1 (Contig-U11587-1Q) /CSM_Contig/Contig-U11587-1Q.Seq.d
          Length = 2537

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 473  acaccaccaccaacaacaacaa 494
            ||||||||||||||||||||||
Sbjct: 1075 acaccaccaccaacaacaacaa 1096


 Score = 34.2 bits (17), Expect = 0.28
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                 
Query: 474  caccaccaccaacaacaacaa 494
            |||||||| ||||||||||||
Sbjct: 1079 caccaccaacaacaacaacaa 1099


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,174
Number of Sequences: 6905
Number of extensions: 21174
Number of successful extensions: 2622
Number of sequences better than 10.0: 368
length of query: 990
length of database: 5,674,871
effective HSP length: 16
effective length of query: 974
effective length of database: 5,564,391
effective search space: 5419716834
effective search space used: 5419716834
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.18
Homology vs DNA 
Query= Contig-U14091-1 (Contig-U14091-1Q) /CSM_Contig/Contig-U14091-1Q.Seq.d
         (990 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...   797   0.0    6
(AU270697) Dictyostelium discoideum vegetative cDNA clone:VS...   696   0.0    3
(AU270698) Dictyostelium discoideum vegetative cDNA clone:VS...   797   0.0    2
(BJ353043) Dictyostelium discoideum cDNA clone:dda48d22, 3' ...   743   0.0    2
(AU266118) Dictyostelium discoideum vegetative cDNA clone:VS...   565   0.0    2
(AU268754) Dictyostelium discoideum vegetative cDNA clone:VS...   684   0.0    1
(AU268755) Dictyostelium discoideum vegetative cDNA clone:VS...   662   0.0    1
(AU263089) Dictyostelium discoideum vegetative cDNA clone:VS...   630   e-176  1
(AU265457) Dictyostelium discoideum vegetative cDNA clone:VS...   281   2e-71  1
(AU265456) Dictyostelium discoideum vegetative cDNA clone:VS...   281   2e-71  1
(AU266117) Dictyostelium discoideum vegetative cDNA clone:VS...    70   2e-07  1
(BX470107) Zebrafish DNA sequence from clone DKEY-199E17 in ...    38   0.12   6
(AL732625) Mouse DNA sequence from clone RP23-169H17 on chro...    50   0.16   1
(CR854930) Zebrafish DNA sequence from clone CH211-268F11 in...    38   0.21   4
(AC199750) Heliconius erato clone BBAM-27D18, WORKING DRAFT ...    38   0.59   6
(AC007090) Homo sapiens PAC clone RP4-701O19 from 7, complet...    48   0.64   1
(AC079787) Homo sapiens chromosome 7 clone RP11-443F14, WORK...    48   0.64   1
(ER512995) 1093015467596 Global-Ocean-Sampling_GS-35-01-01-1...    48   0.64   1
(EK158513) 1095458014478 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.64   1
(EJ467707) 1095403390273 Global-Ocean-Sampling_GS-28-01-01-1...    48   0.64   1
(EJ284087) 1095368007408 Global-Ocean-Sampling_GS-27-01-01-1...    48   0.64   1
(AW576538) UI-HF-BN0-alq-g-12-0-UI.s1 NIH_MGC_50 Homo sapien...    48   0.64   1
(AC172394) Strongylocentrotus purpuratus clone R3-14J24, WOR...    40   0.65   4
(BQ719923) AGENCOURT_8099913 Lupski_sympathetic_trunk Homo s...    44   0.76   2
(AF028707) Phaseolus vulgaris ribulose 1,5-bisphosphate carb...    38   1.2    2
(CQ873071) Sequence 684 from Patent WO2004078949.                  36   1.6    9
(AC214615) Heliconius erato clone BBAM-36L22, WORKING DRAFT ...    38   1.7    6
(AC131340) Mus musculus BAC clone RP23-472G22 from chromosom...    46   2.5    1
(Z81088) Caenorhabditis elegans Cosmid F53F1.                      46   2.5    1
(AC092278) Homo sapiens chromosome 5 clone CTD-2012B7, compl...    46   2.5    1
(CU862074) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.5    1
(EK565638) 1095521039461 Global-Ocean-Sampling_GS-32-01-01-1...    46   2.5    1
(EK423155) 1095515641953 Global-Ocean-Sampling_GS-31-01-01-1...    46   2.5    1
(CE778128) tigr-gss-dog-17000317009358 Dog Library Canis lup...    46   2.5    1
(CB400016) OSTF167A1_1 AD-wrmcDNA Caenorhabditis elegans cDN...    46   2.5    1
(CP000806) Cyanothece sp. ATCC 51142 circular chromosome, co...    46   2.5    1
(AM433228) Vitis vinifera contig VV78X071247.4, whole genome...    36   2.9    3
(AC229974) Monodelphis domestica clone VMRC18-932F8, WORKING...    38   3.9    3
(EA266463) Sequence 684 from patent US 7241867.                    36   4.5    9
(DD419615) GENES OF AN OTITIS MEDIA ISOLATE OF NONTYPEABLE H...    36   4.5    9
(AC092547) Homo sapiens 3q BAC RP11-371L14 (Roswell Park Can...    34   4.8    2
(AC007510) Homo sapiens chromosome 17, clone hRPK.678_P_16, ...    34   4.8    2
(CL390319) RPCI44_288A24.r RPCI-44 Sus scrofa genomic clone ...    30   5.9    3
(EI780136) CHORI518002B03TR BAC library from the breast cell...    34   6.4    2
(CU915270) Mouse DNA sequence *** SEQUENCING IN PROGRESS ***...    38   7.5    4
(AC115682) Dictyostelium discoideum chromosome 2 map 4101105...    36   9.2    6
(BV439306) S237P6509RE1.T0 PortugueseWaterDog Canis familiar...    44   9.9    1
(AL645546) Mouse DNA sequence from clone RP23-124G18 on chro...    44   9.9    1
(AP008218) Oryza sativa (japonica cultivar-group) genomic DN...    44   9.9    1
(AM453516) Vitis vinifera contig VV78X263569.4, whole genome...    44   9.9    1
(AL732381) Oryza sativa chromosome 12, . BAC OJ1112_F01 of l...    44   9.9    1
(AL731785) Oryza sativa chromosome 12, . BAC OSJNBa0037L20 o...    44   9.9    1
(AC189305) Brassica rapa subsp. pekinensis clone KBrB031O20,...    44   9.9    1
(EA695168) Sequence 74047 from patent US 7365185.                  44   9.9    1
(EA663549) Sequence 42428 from patent US 7365185.                  44   9.9    1
(AL035476) Plasmodium falciparum MAL4P3.                           44   9.9    1
(AL035475) Plasmodium falciparum MAL4P2.                           44   9.9    1
(AE014850) Plasmodium falciparum 3D7 chromosome 12, section ...    44   9.9    1
(AL449209) Homo sapiens chromosome 3 sequence from BAC 469K1...    44   9.9    1
(AC108219) Homo sapiens BAC clone RP11-730G16 from 2, comple...    44   9.9    1
(AC093530) Homo sapiens chromosome 5 clone RP11-401N6, compl...    44   9.9    1
(AC118433) Rattus norvegicus clone CH230-347A22, *** SEQUENC...    44   9.9    1
(AC108532) Rattus norvegicus clone CH230-91F12, WORKING DRAF...    44   9.9    1
(AC097401) Rattus norvegicus clone CH230-37J17, *** SEQUENCI...    44   9.9    1
(AC093276) Homo sapiens chromosome 5 clone RP11-385P11, WORK...    44   9.9    1
(AC073659) Homo sapiens chromosome 2 clone RP11-387B4 map 2,...    44   9.9    1
(AC073432) Homo sapiens chromosome 5 clone RP11-243A18, WORK...    44   9.9    1
(AC055870) Homo sapiens chromosome 3 clone RP11-704J9 map 3,...    44   9.9    1
(AL844506) Plasmodium falciparum chromosome  7.                    44   9.9    1
(AC218886) Procavia capensis clone CH280-239J9, WORKING DRAF...    44   9.9    1
(AC215691) Pongo abelii chromosome UNKNOWN clone CH276-72D1,...    44   9.9    1
(AC206525) Zea mays chromosome 1 clone CH201-121O18; ZMMBBc0...    44   9.9    1
(AC189611) Brassica rapa subsp. pekinensis clone KBrH067N03,...    44   9.9    1
(AC016016) Homo sapiens chromosome 17 clone RP11-107P18 map ...    44   9.9    1
(AC005505) Plasmodium falciparum chromosome 12 clone 3D7, **...    44   9.9    1
(AC005139) Plasmodium falciparum chromosome 12, *** SEQUENCI...    44   9.9    1
(ET914740) CHO_OF194xf24r1.ab1 CHO_OF Nicotiana tabacum geno...    44   9.9    1
(ER878860) MUGQ_CH252P269B10T7_CN563_047 CHORI-252 Vervet Mo...    44   9.9    1
(ER632389) 1093018508273 Global-Ocean-Sampling_GS-36-01-01-2...    44   9.9    1
(ER454303) 1092963862567 Global-Ocean-Sampling_GS-35-01-01-1...    44   9.9    1
(ER276843) 1095527168796 Global-Ocean-Sampling_GS-33-01-01-1...    44   9.9    1
(EJ911953) 1093018541554 Global-Ocean-Sampling_GS-30-02-01-1...    44   9.9    1
(EJ599141) 1092961121961 Global-Ocean-Sampling_GS-29-01-01-1...    44   9.9    1
(EJ450263) 1093015415111 Global-Ocean-Sampling_GS-28-01-01-1...    44   9.9    1
(EJ382143) 1092963766539 Global-Ocean-Sampling_GS-28-01-01-1...    44   9.9    1
(ED799017) MG__Ba0003A20f MG__Ba Mimulus guttatus genomic, g...    44   9.9    1
(DX817112) MUGQ_CH252P065M23Sp6_AV1127_036 CHORI-252 Vervet ...    44   9.9    1
(DX520631) GH_MBb0083D07r GH_MBb Gossypium hirsutum genomic ...    44   9.9    1
(DU084527) 280284 Tomato HindIII BAC Library Solanum lycoper...    44   9.9    1
(CW950900) TcB36.1_H09_SP6 Tribolium BAC library Tribolium c...    44   9.9    1
(AG390785) Mus musculus molossinus DNA, clone:MSMg01-207J19....    44   9.9    1
(ES476016) gmapht_0010k08.pDNRF2 Gadus morhua heart library ...    44   9.9    1
(EL343828) CCEL11804.b1_G24.ab1 CCE(LMS) endive Cichorium en...    44   9.9    1
(EG593943) E0689R one day old larvae library Antheraea mylit...    44   9.9    1
(EG592768) SA617R silkglands of fifth instar larvae library ...    44   9.9    1
(EG592268) SA250F silkglands of fifth instar larvae library ...    44   9.9    1
(EG592064) SA076F silkglands of fifth instar larvae library ...    44   9.9    1
(DV074570) VP01_19_L10.x1 FH VP01 Mus musculus cDNA clone VP...    44   9.9    1
(FL634831) gmnlmfta_0005m16.t7 Gadus morhua skeletal muscle ...    44   9.9    1
(FC734963) CBBG9333.fwd CBBG Lottia gigantea 12,15,18h embry...    44   9.9    1

>(AC116984) Dictyostelium discoideum chromosome 2 map 2567470-3108875
            strain AX4, complete sequence.
          Length = 541399

 Score =  797 bits (402), Expect(6) = 0.0
 Identities = 402/402 (100%)
 Strand = Plus / Minus


Query: 529  tgaagtttcactaagtcaaccaaaaccaactacaactccaccaccatcagcaaccaattt 588
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7513 tgaagtttcactaagtcaaccaaaaccaactacaactccaccaccatcagcaaccaattt 7454


Query: 589  agattttattaaagatcttttttcaaatttaccaacacaaccaaaacaaccacaaattac 648
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7453 agattttattaaagatcttttttcaaatttaccaacacaaccaaaacaaccacaaattac 7394


Query: 649  attgggtaaaatattgacagcagagaatttaataccattcttaagagagaatccagagat 708
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7393 attgggtaaaatattgacagcagagaatttaataccattcttaagagagaatccagagat 7334


Query: 709  taaaaaagatttaattcaatatttaccagaggaatatcaaaaggatgagaatatgattaa 768
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7333 taaaaaagatttaattcaatatttaccagaggaatatcaaaaggatgagaatatgattaa 7274


Query: 769  tgaagttttacattctgctcaatttttacaatcaattgaaaccttagattatgcaattca 828
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7273 tgaagttttacattctgctcaatttttacaatcaattgaaaccttagattatgcaattca 7214


Query: 829  tgaaggtcatggtcctgaaattgtctctcttttaggttatgaaccatcaattgcttctca 888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7213 tgaaggtcatggtcctgaaattgtctctcttttaggttatgaaccatcaattgcttctca 7154


Query: 889  aagaggtgttgagggtttcttaacaaatattcaagaaggtac 930
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7153 aagaggtgttgagggtttcttaacaaatattcaagaaggtac 7112

 Score =  482 bits (243), Expect(6) = 0.0
 Identities = 243/243 (100%)
 Strand = Plus / Minus


Query: 197  acaccagaaggattaacatgtgttcaatggagaccaagagattcatcagcatatgaagat 256
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8379 acaccagaaggattaacatgtgttcaatggagaccaagagattcatcagcatatgaagat 8320


Query: 257  gaattttattttgcaccaggtgaatcaaaatttatcaaagtacctgcatgtaaaactggt 316
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8319 gaattttattttgcaccaggtgaatcaaaatttatcaaagtacctgcatgtaaaactggt 8260


Query: 317  agaatgtattacttaaacttttcaggttcagatcaaaaggaattctattggttacaagaa 376
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8259 agaatgtattacttaaacttttcaggttcagatcaaaaggaattctattggttacaagaa 8200


Query: 377  gcaaatgtagaaggtgatgctaaaattgaaaaagcacttaaagttattgaatcatatatt 436
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8199 gcaaatgtagaaggtgatgctaaaattgaaaaagcacttaaagttattgaatcatatatt 8140


Query: 437  cca 439
            |||
Sbjct: 8139 cca 8137

 Score =  230 bits (116), Expect(6) = 0.0
 Identities = 128/132 (96%)
 Strand = Plus / Minus


Query: 65   ctcaacaaattatagaatatataaaaaatgaatagaccaccacaagacgtagaatttaaa 124
            |||| ||||||||| ||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 8692 ctcaccaaattataaaatttttaaaaaatgaatagaccaccacaagacgtagaatttaaa 8633


Query: 125  gctggtaaagctaaattaacaggtacaacagtaacatcagattcaagaaagggttactta 184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8632 gctggtaaagctaaattaacaggtacaacagtaacatcagattcaagaaagggttactta 8573


Query: 185  aaatttggtgtt 196
            ||||||||||||
Sbjct: 8572 aaatttggtgtt 8561

 Score = 32.2 bits (16), Expect(6) = 0.0
 Identities = 16/16 (100%)
 Strand = Plus / Minus


Query: 457  agaaatggtagttgat 472
            ||||||||||||||||
Sbjct: 7585 agaaatggtagttgat 7570

 Score = 26.3 bits (13), Expect(6) = 0.0
 Identities = 13/13 (100%)
 Strand = Plus / Minus


Query: 28    aagatcaaaattt 40
             |||||||||||||
Sbjct: 20343 aagatcaaaattt 20331

 Score = 26.3 bits (13), Expect(6) = 0.0
 Identities = 13/13 (100%)
 Strand = Plus / Minus


Query: 20     ttgttgtgaagat 32
              |||||||||||||
Sbjct: 451184 ttgttgtgaagat 451172

 Score = 46.1 bits (23), Expect = 2.5
 Identities = 23/23 (100%)
 Strand = Plus / Minus


Query: 19   tttgttgtgaagatcaaaatttc 41
            |||||||||||||||||||||||
Sbjct: 8737 tttgttgtgaagatcaaaatttc 8715

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,078,090,201
Number of extensions: 65084631
Number of successful extensions: 5239732
Number of sequences better than 10.0: 106
Length of query: 990
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 966
Effective length of database: 97,308,875,965
Effective search space: 94000374182190
Effective search space used: 94000374182190
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 9
Homology vs Protein 
Query= Contig-U14091-1 (Contig-U14091-1Q) /CSM_Contig/Contig-U14091-1Q.Seq.d
         (990 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q556N5) RecName: Full=Proteasomal ubiquitin receptor ADRM1 homo...   507   e-142
BC019746_1(BC019746|pid:none) Mus musculus adhesion regulating m...    87   1e-15
AK145792_1(AK145792|pid:none) Mus musculus blastocyst blastocyst...    82   2e-14
(Q9JMB5) RecName: Full=Proteasomal ubiquitin receptor ADRM1; Alt...    82   2e-14
AB032742_1(AB032742|pid:none) Rattus norvegicus mRNA for cell me...    82   2e-14
(A1L5A6) RecName: Full=Proteasomal ubiquitin receptor ADRM1; Alt...    82   3e-14
DQ216324_1(DQ216324|pid:none) Taeniopygia guttata clone 0058P005...    82   3e-14
DQ216323_1(DQ216323|pid:none) Taeniopygia guttata clone 0061P002...    82   3e-14
AK297567_1(AK297567|pid:none) Homo sapiens cDNA FLJ56666 complet...    82   3e-14
(Q16186) RecName: Full=Proteasomal ubiquitin receptor ADRM1; Alt...    82   3e-14
(Q98SH3) RecName: Full=Proteasomal ubiquitin receptor ADRM1; Alt...    82   3e-14
(Q6P877) RecName: Full=Proteasomal ubiquitin receptor ADRM1;  &B...    80   1e-13
(Q6GN67) RecName: Full=Proteasomal ubiquitin receptor ADRM1-A; A...    80   1e-13
(Q7ZXD6) RecName: Full=Proteasomal ubiquitin receptor ADRM1-B;  ...    79   2e-13
(Q6NZ09) RecName: Full=Proteasomal ubiquitin receptor ADRM1;  &B...    77   7e-13
BC154825_1(BC154825|pid:none) Danio rerio adhesion regulating mo...    77   7e-13
BT043245_1(BT043245|pid:none) Zea mays full-length cDNA clone ZM...    77   9e-13
AC136217_6(AC136217|pid:none) Oryza sativa (japonica cultivar-gr...    77   1e-12
BT075033_1(BT075033|pid:none) Osmerus mordax clone omor-rgc-507-...    74   6e-12
AE013599_1891(AE013599|pid:none) Drosophila melanogaster chromos...    74   8e-12
DQ216325_1(DQ216325|pid:none) Taeniopygia guttata clone 0061P001...    70   1e-10
AM998938_1(AM998938|pid:none) Drosophila simulans CG6789 gene, s...    70   1e-10
AM998931_1(AM998931|pid:none) Drosophila melanogaster CG6789 gen...    70   1e-10
AE014298_734(AE014298|pid:none) Drosophila melanogaster chromoso...    70   1e-10
AM998933_1(AM998933|pid:none) Drosophila melanogaster CG6789 gen...    70   1e-10
AM998926_1(AM998926|pid:none) Drosophila melanogaster CG6789 gen...    70   1e-10
AM998929_1(AM998929|pid:none) Drosophila melanogaster CG6789 gen...    70   1e-10
AM998937_1(AM998937|pid:none) Drosophila melanogaster CG6789 gen...    70   1e-10
AM998932_1(AM998932|pid:none) Drosophila melanogaster CG6789 gen...    70   1e-10
AM998936_1(AM998936|pid:none) Drosophila melanogaster CG6789 gen...    70   1e-10
FM246054_1(FM246054|pid:none) Drosophila melanogaster CG6789 gen...    70   1e-10
AM998927_1(AM998927|pid:none) Drosophila melanogaster CG6789 gen...    70   1e-10
AM998935_1(AM998935|pid:none) Drosophila melanogaster CG6789 gen...    70   1e-10
CR954211_259(CR954211|pid:none) Ostreococcus tauri strain OTTH05...    69   3e-10
AC148238_12(AC148238|pid:none) Medicago truncatula clone mth2-4a...    65   3e-09
CP000591_245(CP000591|pid:none) Ostreococcus lucimarinus CCE9901...    62   4e-08
FN357588_11(FN357588|pid:none) Schistosoma mansoni genome sequen...    59   3e-07
FN319255_1(FN319255|pid:none) Schistosoma japonicum isolate Anhu...    57   8e-07
AY810280_1(AY810280|pid:none) Schistosoma japonicum SJCHGC04821 ...    57   8e-07
FN314604_1(FN314604|pid:none) Schistosoma japonicum isolate Anhu...    57   8e-07
AM494971_168(AM494971|pid:none) Leishmania braziliensis chromoso...    57   1e-06
AM502253_191(AM502253|pid:none) Leishmania infantum chromosome 35.     57   1e-06
EF364425_3(EF364425|pid:none) Dekkera bruxellensis URA4 dihydroo...    53   2e-05
DQ196182_1(DQ196182|pid:none) Triticum monococcum cultivar DV92 ...    48   5e-04
FN392320_634(FN392320|pid:none) Pichia pastoris GS115 chromosome...    48   6e-04
CR382124_117(CR382124|pid:none) Kluyveromyces lactis strain NRRL...    46   0.002
CP001577_124(CP001577|pid:none) Micromonas sp. RCC299 chromosome...    44   0.009
CR380956_189(CR380956|pid:none) Candida glabrata strain CBS138 c...    44   0.011
CU633901_46(CU633901|pid:none) Podospora anserina genomic DNA ch...    43   0.015
CP000500_272(CP000500|pid:none) Pichia stipitis CBS 6054 chromos...    41   0.056
AM910995_339(AM910995|pid:none) Plasmodium knowlesi strain H chr...    39   0.28
AM270165_103(AM270165|pid:none) Aspergillus niger contig An08c01...    37   0.80
AE017349_261(AE017349|pid:none) Cryptococcus neoformans var. neo...    34   6.8
CP001185_1230(CP001185|pid:none) Thermosipho africanus TCF52B, c...    34   8.9
AM920428_889(AM920428|pid:none) Penicillium chrysogenum Wisconsi...    34   8.9

>(Q556N5) RecName: Full=Proteasomal ubiquitin receptor ADRM1
           homolog;  &AC116984_2(AC116984|pid:none)
          Length = 287

 Score =  507 bits (1305), Expect = e-142
 Identities = 255/280 (91%), Positives = 255/280 (91%)
 Frame = +2

Query: 92  MNRPPQDVEFKAGKAKLTGTTVTSDSRKGYLKFGVTPEGLTCVQWRPRDSSAYEDEFYFA 271
           MNRPPQDVEFKAGKAKLTGTTVTSDSRKGYLKFGVTPEGLTCVQWRPRDSSAYEDEFYFA
Sbjct: 1   MNRPPQDVEFKAGKAKLTGTTVTSDSRKGYLKFGVTPEGLTCVQWRPRDSSAYEDEFYFA 60

Query: 272 PGESKFIKVPACKTGRMYYLNFSGSDQKEFYWLQEANVEGDAKIEKALKVIESYIXXXXX 451
           PGESKFIKVPACKTGRMYYLNFSGSDQKEFYWLQEANVEGDAKIEKALKVIESYI
Sbjct: 61  PGESKFIKVPACKTGRMYYLNFSGSDQKEFYWLQEANVEGDAKIEKALKVIESYIPDDDD 120

Query: 452 XXXXXXXXXXXTTTIKQEPPKNPTINEVSLSQXXXXXXXXXSATNLDFIKDLFSNLPTQP 631
                      TTTIKQEPPKNPTINEVSLSQ         SATNLDFIKDLFSNLPTQP
Sbjct: 121 DEEMVVDTPPPTTTIKQEPPKNPTINEVSLSQPKPTTTPPPSATNLDFIKDLFSNLPTQP 180

Query: 632 KQPQITLGKILTAENLIPFLRENPEIKKDLIQYLPEEYQKDENMINEVLHSAQFLQSIET 811
           KQPQITLGKILTAENLIPFLRENPEIKKDLIQYLPEEYQKDENMINEVLHSAQFLQSIET
Sbjct: 181 KQPQITLGKILTAENLIPFLRENPEIKKDLIQYLPEEYQKDENMINEVLHSAQFLQSIET 240

Query: 812 LDYAIHEGHGPEIVSLLGYEPSIASQRGVEGFLTNIQEGT 931
           LDYAIHEGHGPEIVSLLGYEPSIASQRGVEGFLTNIQEGT
Sbjct: 241 LDYAIHEGHGPEIVSLLGYEPSIASQRGVEGFLTNIQEGT 280

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,174,187,964
Number of extensions: 19948024
Number of successful extensions: 51337
Number of sequences better than 10.0: 55
Number of HSP's gapped: 51224
Number of HSP's successfully gapped: 63
Length of query: 330
Length of database: 1,051,180,864
Length adjustment: 129
Effective length of query: 201
Effective length of database: 633,664,753
Effective search space: 127366615353
Effective search space used: 127366615353
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.59  gvh: 0.43  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 24.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for Contig-U14091-1 is nuc
VS (DIR, S) 5
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0