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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U14089-1
Contig ID Contig-U14089-1
Contig update 2002.12.18
Contig sequence 
>Contig-U14089-1 (Contig-U14089-1Q) /CSM_Contig/Contig-U14089-1Q.Seq.d
NNNNNNNNNNACAGGAATTTAACTGTAGTCAAATTCTTCAATAATACTTT
TACCAAAGAGAAAGTAGAAAAAGAACCAGTTATCTGGAAGAATGCATGGG
ATATAACAACTCTTTCAGTTTCTATGAATAATTACCAATGTTTACTGATG
CCATTCTTGAAAATTGTTGATGAGGATGAAGATGATTGGAAAGACCATAG
ATTTTTAAAACTCGTCGAATTAGCCTGTCTTAGATTTGCGAGAGCTGGCT
ACAAGCATTTAGACCTTAAGAGAAGACATGTTGCTAGACATTCTACCCCC
AACAATGATAGAGTCGTTGTATTTATAGACCTTTCATCTGTAGATCCTAT
AGATCCACTAGATATTGATGCTGTCAGCAATGAAATGTACCAAACTTTAA
TAGATGAAGGACGAACAAAAGATCCACCACCACAAACTGTTAAACAAATA
CAACTACCACCACAAACTGGTAAACCACAACCACAACCACCATTAACTCG
TAGTAAAACTCGTAAAGAAAAAGAGGAAACATCACCACAACCAACAAAAA
ATACTCATGAAATTTCAAACGAAGTATTTCAAACACCAATTAAAAAATAT
AAGGCAGAAGATAAAGATTAAGATTTTTGAAATTATTCACCAAAATATTT
ATTTTGAAAAAAATTAGACTTTTCTCACCTATGTGGGAAAAAGCCACGTG
GTGAGTTTTTAATGTCGATTGAAAAACTCATAAACATATTTTAAATCTCA
AGTATAAAAATTTTCAATAGTAAAAAA
Gap no gap
Contig length 777
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 4668595
End point 4667827
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U14089
List of clone(s) 

est1=AHI869Z,1,768
Translated Amino Acid sequence 
XXXXRNLTVVKFFNNTFTKEKVEKEPVIWKNAWDITTLSVSMNNYQCLLMPFLKIVDEDE
DDWKDHRFLKLVELACLRFARAGYKHLDLKRRHVARHSTPNNDRVVVFIDLSSVDPIDPL
DIDAVSNEMYQTLIDEGRTKDPPPQTVKQIQLPPQTGKPQPQPPLTRSKTRKEKEETSPQ
PTKNTHEISNEVFQTPIKKYKAEDKD*df*nyspkylf*kkldfshlcgkkprgeflmsi
eklinif*issikifnskk
Translated Amino Acid sequence (All Frames) 
Frame A:
XXXXRNLTVVKFFNNTFTKEKVEKEPVIWKNAWDITTLSVSMNNYQCLLMPFLKIVDEDE
DDWKDHRFLKLVELACLRFARAGYKHLDLKRRHVARHSTPNNDRVVVFIDLSSVDPIDPL
DIDAVSNEMYQTLIDEGRTKDPPPQTVKQIQLPPQTGKPQPQPPLTRSKTRKEKEETSPQ
PTKNTHEISNEVFQTPIKKYKAEDKD*df*nyspkylf*kkldfshlcgkkprgeflmsi
eklinif*issikifnskk


Frame B:
xxxtgi*l*snssiillpkrk*kknqlsgrmhgi*qlfqfl*iitnvy*chs*kllmrmk
migktidf*nssn*pvldlrelatsi*tlredmlldilpptmieslyl*tfhl*il*ih*
ilmlsamkctkl**mkdeqkihhhkllnkynyhhklvnhnhnhh*lvvklvkkkrkhhhn
qqkilmkfqtkyfkhqlknirqkikikifeiihqniyfekn*tfltyvgkshvvsf*crl
kns*tyfksqv*kfsivk


Frame C:
xxxqefncsqilq*yfyqresrkrtsyleecmgynnsfsfye*lpmftdailenc**g*r
*lerp*ifktrrisls*iceswlqafrp*ektcc*tfypqq**srciyrpficrsyrstr
y*ccqq*nvpnfnr*rtnkrstttnc*tntttttnw*ttttttins**ns*rkrgnittt
nkkys*nfkrsisntn*ki*grr*rlrflklftkifilkkirlfspmwekatw*vfnvd*
kthkhilnlkyknfq**k
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U14089-1 (Contig-U14089-1Q)
/CSM_Contig/Contig-U14089-1Q.Seq.d
         (777 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U14089-1 (Contig-U14089-1Q) /CSM_Contig/Conti...  1479  0.0
Contig-U04813-1 (Contig-U04813-1Q) /CSM_Contig/Conti...    46  6e-05
Contig-U12283-1 (Contig-U12283-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U12144-1 (Contig-U12144-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U10719-1 (Contig-U10719-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U09796-1 (Contig-U09796-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U14255-1 (Contig-U14255-1Q) /CSM_Contig/Conti...    36  0.055
Contig-U14010-1 (Contig-U14010-1Q) /CSM_Contig/Conti...    36  0.055
Contig-U13852-1 (Contig-U13852-1Q) /CSM_Contig/Conti...    36  0.055
Contig-U13845-1 (Contig-U13845-1Q) /CSM_Contig/Conti...    36  0.055

>Contig-U14089-1 (Contig-U14089-1Q) /CSM_Contig/Contig-U14089-1Q.Seq.d
          Length = 777

 Score = 1479 bits (746), Expect = 0.0
 Identities = 760/767 (99%)
 Strand = Plus / Plus

                                                                       
Query: 11  acaggaatttaactgtagtcaaattcttcaataatacttttaccaaagagaaagtagaaa 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11  acaggaatttaactgtagtcaaattcttcaataatacttttaccaaagagaaagtagaaa 70

                                                                       
Query: 71  aagaaccagttatctggaagaatgcatgggatataacaactctttcagtttctatgaata 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71  aagaaccagttatctggaagaatgcatgggatataacaactctttcagtttctatgaata 130

                                                                       
Query: 131 attaccaatgtttactgatgccattcttgaaaattgttgatgaggatgaagatgattgga 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 attaccaatgtttactgatgccattcttgaaaattgttgatgaggatgaagatgattgga 190

                                                                       
Query: 191 aagaccatagatttttaaaactcgtcgaattagcctgtcttagatttgcgagagctggct 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 aagaccatagatttttaaaactcgtcgaattagcctgtcttagatttgcgagagctggct 250

                                                                       
Query: 251 acaagcatttagaccttaagagaagacatgttgctagacattctacccccaacaatgata 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 acaagcatttagaccttaagagaagacatgttgctagacattctacccccaacaatgata 310

                                                                       
Query: 311 gagtcgttgtatttatagacctttcatctgtagatcctatagatccactagatattgatg 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gagtcgttgtatttatagacctttcatctgtagatcctatagatccactagatattgatg 370

                                                                       
Query: 371 ctgtcagcaatgaaatgtaccaaactttaatagatgaaggacgaacaaaagatccaccac 430
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ctgtcagcaatgaaatgtaccaaactttaatagatgaaggacgaacaaaagatccaccac 430

                                                                       
Query: 431 cacaaactgttaaacaaatacaactaccaccacaaactggtaaaccacaaccacaaccac 490
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 cacaaactgttaaacaaatacaactaccaccacaaactggtaaaccacaaccacaaccac 490

                                                                       
Query: 491 cattaactcgtagtaaaactcgtaaagaaaaagaggaaacatcaccacaaccaacaaaaa 550
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 cattaactcgtagtaaaactcgtaaagaaaaagaggaaacatcaccacaaccaacaaaaa 550

                                                                       
Query: 551 atactcatgaaatttcaaacgaagtatttcaaacaccaattaaaaaatataaggcagaag 610
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 atactcatgaaatttcaaacgaagtatttcaaacaccaattaaaaaatataaggcagaag 610

                                                                       
Query: 611 ataaagattaagatttttgaaattattcaccaaaatatttattttgnnnnnnnttagact 670
           ||||||||||||||||||||||||||||||||||||||||||||||       |||||||
Sbjct: 611 ataaagattaagatttttgaaattattcaccaaaatatttattttgaaaaaaattagact 670

                                                                       
Query: 671 tttctcacctatgtgggaaaaagccacgtggtgagtttttaatgtcgattgaaaaactca 730
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tttctcacctatgtgggaaaaagccacgtggtgagtttttaatgtcgattgaaaaactca 730

                                                          
Query: 731 taaacatattttaaatctcaagtataaaaattttcaatagtaaaaaa 777
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 taaacatattttaaatctcaagtataaaaattttcaatagtaaaaaa 777


>Contig-U04813-1 (Contig-U04813-1Q) /CSM_Contig/Contig-U04813-1Q.Seq.d
          Length = 591

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 33/35 (94%), Gaps = 1/35 (2%)
 Strand = Plus / Plus

                                              
Query: 727 ctcataaacata-ttttaaatctcaagtataaaaa 760
           |||||||||||| ||||||||||||| ||||||||
Sbjct: 481 ctcataaacataattttaaatctcaaatataaaaa 515


 Score = 38.2 bits (19), Expect = 0.014
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 755 taaaaattttcaatagtaaaaaa 777
           ||||||||||||||| |||||||
Sbjct: 517 taaaaattttcaataataaaaaa 539


>Contig-U12283-1 (Contig-U12283-1Q) /CSM_Contig/Contig-U12283-1Q.Seq.d
          Length = 1960

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 473  aaccacaaccacaaccacca 492
            ||||||||||||||||||||
Sbjct: 1620 aaccacaaccacaaccacca 1639


 Score = 34.2 bits (17), Expect = 0.22
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 474  accacaaccacaaccac 490
            |||||||||||||||||
Sbjct: 1615 accacaaccacaaccac 1631


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,106
Number of Sequences: 6905
Number of extensions: 12106
Number of successful extensions: 1452
Number of sequences better than 10.0: 203
length of query: 777
length of database: 5,674,871
effective HSP length: 16
effective length of query: 761
effective length of database: 5,564,391
effective search space: 4234501551
effective search space used: 4234501551
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.18
Homology vs DNA 
Query= Contig-U14089-1 (Contig-U14089-1Q) /CSM_Contig/Contig-U14089-1Q.Seq.d
         (777 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ352995) Dictyostelium discoideum cDNA clone:dda48j18, 3' ...   819   0.0    3
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...   811   0.0    4
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    80   1e-25  4
(C92172) Dictyostelium discoideum slug cDNA, clone SSD185.         38   5e-04  2
(AC087272) Homo sapiens chromosome 8, clone RP11-139G7, comp...    34   0.024  7
(AP003713) Oryza sativa Japonica Group genomic DNA, chromoso...    36   0.060  5
(FC320514) CAIC772.fwd CAIC Nematostella vectensis Nemve who...    50   0.13   1
(FC209697) CAGF11888.fwd CAGF Nematostella vectensis Nemve E...    50   0.13   1
(FC209696) CAGF11888.rev CAGF Nematostella vectensis Nemve E...    50   0.13   1
(CK266266) EST712344 potato abiotic stress cDNA library Sola...    38   0.42   3
(CV497694) 61915.1 Mixed Leaf Solanum tuberosum cDNA clone 6...    38   0.43   3
(AL671964) Mouse DNA sequence from clone RP23-198N23 on chro...    48   0.50   1
(EF514212) Solanum tuberosum strain P6/210 contig R1, comple...    48   0.50   1
(AM425271) Vitis vinifera contig VV78X240040.2, whole genome...    48   0.50   1
(AC149288) Solanum demissum chromosome 5 clone PGEC446J10, c...    48   0.50   1
(AC024966) Mus musculus chromosome 11 clone RP23-328K9 map 1...    48   0.50   1
(EK039411) 1092959502326 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.50   1
(FE391667) CBTO3389.fwd CBTO_Daphnia_pulex_Chosen_One_Librar...    48   0.50   1
(FE391666) CBTO3389.rev CBTO_Daphnia_pulex_Chosen_One_Librar...    48   0.50   1
(CV496153) 73880.1 Cold Sweetening B Solanum tuberosum cDNA ...    38   0.50   3
(CK273441) EST719519 potato abiotic stress cDNA library Sola...    38   0.50   3
(CK272111) EST718189 potato abiotic stress cDNA library Sola...    38   0.56   3
(AC201634) Strongylocentrotus purpuratus clone R3-3107N13, W...    36   0.56   5
(AC140850) Medicago truncatula chromosome 8 clone mth2-11i23...    44   0.60   5
(AZ923328) 4908.gf20j12.s1 Saccharomyces cariocanus UFRJ 507...    42   0.74   2
(AC176673) Strongylocentrotus purpuratus clone R3-112F22, WO...    32   0.84   9
(CR626937) Human DNA sequence from clone XX-NCIH2171_3C16.         38   1.2    6
(AC164607) Mus musculus chromosome 5, clone RP23-455A10, com...    46   2.0    1
(AC104192) Mus musculus chromosome 5, clone RP24-439L10, com...    46   2.0    1
(AL132668) Human chromosome 14 DNA sequence BAC R-550M19 of ...    46   2.0    1
(CU462924) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.0    1
(AC181401) Strongylocentrotus purpuratus clone R3-1112K19, W...    46   2.0    1
(AC180864) Strongylocentrotus purpuratus clone R3-3026A24, W...    46   2.0    1
(EH716306) CNML2635.b1_F12.ab1 CNM(LMS) spotted knapweed Cen...    46   2.0    1
(FK412558) 454GmaGlobSeed147190 Soybean Seeds Containing Glo...    46   2.0    1
(AQ200863) RPCI11-60A13.TJ RPCI-11 Homo sapiens genomic clon...    38   2.8    2
(AQ629119) RPCI-11-469A20.TV RPCI-11 Homo sapiens genomic cl...    38   2.8    2
(AQ533041) RPCI-11-353C6.TJ RPCI-11 Homo sapiens genomic clo...    38   2.9    2
(AM180355) Clostridium difficile 630 complete genome.              32   3.0    2
(EV809857) 021212FAAD001870HT (FAAD) Epiphyas postvittana ma...    42   3.7    2
(AL355591) Human DNA sequence from clone RP11-300B7 on chrom...    34   3.8    2
(BV596213) S216P6941FD11.T0 Masuku Pan troglodytes troglodyt...    38   4.2    2
(BV599240) S217P61637RG7.T0 Noemie Pan troglodytes troglodyt...    38   4.8    2
(EK389955) 1095469497462 Global-Ocean-Sampling_GS-31-01-01-1...    38   5.0    2
(DC198854) Plasmodium berghei cDNA clone:LV008747, liver sta...    32   5.1    2
(AL158802) Human chromosome 14 DNA sequence BAC C-2008K18 of...    38   5.4    5
(CL099743) ISB1-33C22_T7.1 ISB1 Xenopus (Silurana) tropicali...    42   5.6    2
(EJ659484) 1092955018832 Global-Ocean-Sampling_GS-30-02-01-1...    36   7.0    3
(EK226849) 1095460161805 Global-Ocean-Sampling_GS-31-01-01-1...    34   7.1    3
(AC187509) Gallus gallus BAC clone CH261-175B19 from chromos...    44   7.7    1
(AC158594) Mus musculus 10 BAC RP23-197I5 (Roswell Park Canc...    44   7.7    1
(AC140308) Mus musculus BAC clone RP23-424G15 from 1, comple...    44   7.7    1
(AC122325) Mus musculus BAC clone RP23-334H17 from chromosom...    44   7.7    1
(AC122187) Mus musculus BAC clone RP23-21P2 from 1, complete...    44   7.7    1
(AC121834) Mus musculus BAC clone RP24-72F20 from chromosome...    44   7.7    1
(AC110918) Mus musculus chromosome 5, clone RP23-189P23, com...    44   7.7    1
(AC110557) Mus musculus chromosome 5, clone RP23-250P16, com...    44   7.7    1
(AP008213) Oryza sativa (japonica cultivar-group) genomic DN...    44   7.7    1
(AP005257) Oryza sativa Japonica Group genomic DNA, chromoso...    44   7.7    1
(EA085323) Sequence 7583 from patent US 7186513.                   44   7.7    1
(AR678082) Sequence 7583 from patent US 6902887.                   44   7.7    1
(AC114969) Homo sapiens chromosome 5 clone RP11-356D23, comp...    44   7.7    1
(AC141816) Apis mellifera clone CH224-61C2, *** SEQUENCING I...    44   7.7    1
(AC131463) Rattus norvegicus clone CH230-15M9, *** SEQUENCIN...    44   7.7    1
(AC118958) Rattus norvegicus clone CH230-434I7, WORKING DRAF...    44   7.7    1
(AC098278) Rattus norvegicus clone CH230-1J15, *** SEQUENCIN...    44   7.7    1
(AC095153) Rattus norvegicus clone CH230-8I10, WORKING DRAFT...    44   7.7    1
(AC091285) Mus musculus chromosome 1 clone RP23-207I2 map 1,...    44   7.7    1
(AC212005) Oryza glaberrima clone OG_BBa0031L07, *** SEQUENC...    44   7.7    1
(AC167765) Bos taurus clone CH240-142A6, *** SEQUENCING IN P...    44   7.7    1
(AZ413984) 1M0188C18F Mouse 10kb plasmid UUGC1M library Mus ...    44   7.7    1
(ER423080) 1092963725376 Global-Ocean-Sampling_GS-35-01-01-1...    44   7.7    1
(EJ251542) 1095344035218 Global-Ocean-Sampling_GS-27-01-01-1...    44   7.7    1
(EI218483) OR__Ba0009K06.f OR__Ba Oryza rufipogon genomic cl...    44   7.7    1
(AL193930) Tetraodon nigroviridis genome survey sequence T7 ...    44   7.7    1
(AG983461) Hemicentrotus pulcherrimus BAC clone: BUB1-04F18_...    44   7.7    1
(DE320349) Bombyx mori genomic DNA, BAC clone:BES_622_G22.         44   7.7    1
(CL961161) OsIFCC005619 Oryza sativa Express Library Oryza s...    44   7.7    1
(AG835473) Oryza sativa Indica Group genomic DNA, BAC end se...    44   7.7    1
(EG029490) AH1883 Shanyou 523 Peanut Cotyledon cDNA Library ...    44   7.7    1
(CV033265) RTNACL1_33_A05.g1_A029 Roots plus added NaCl Pinu...    44   7.7    1
(CV033190) RTNACL1_33_A05.b1_A029 Roots plus added NaCl Pinu...    44   7.7    1
(AM384557) Oryzias latipes EST, clone FOE002-P00142-DPE-R_J23.     44   7.7    1
(AM378081) Oryzias latipes EST, clone FOE002-P00115-DPE-R_C20.     44   7.7    1
(AM372346) Oryzias latipes EST, clone FOE002-P00092-DPE-R_P02.     44   7.7    1
(AM362102) Oryzias latipes EST, clone FOE002-P00051-DPE-R_P14.     44   7.7    1
(AM354190) Oryzias latipes EST, clone FOE002-P00023-DPE-R_J20.     44   7.7    1
(CF882739) tric087xa24.b1 T.reesei mycelial culture, Version...    44   7.7    1
(CF870715) tric024xm04.b1 T.reesei mycelial culture, Version...    44   7.7    1
(CF474987) RTWW2_5_F12.b1_A021 Well-watered loblolly pine ro...    44   7.7    1
(CF394031) RTDS2_2_F07.g1_A021 Drought-stressed loblolly pin...    44   7.7    1
(CB909038) tric087xa24 T.reesei mycelial culture, Version 3 ...    44   7.7    1
(CB900913) tric024xm04 T.reesei mycelial culture, Version 3 ...    44   7.7    1
(FK656676) 454GmaGlobSeed391308 Soybean Seeds Containing Glo...    44   7.7    1
(FK645536) 454GmaGlobSeed380168 Soybean Seeds Containing Glo...    44   7.7    1
(FK564782) 454GmaGlobSeed299414 Soybean Seeds Containing Glo...    44   7.7    1
(FK547183) 454GmaGlobSeed281815 Soybean Seeds Containing Glo...    44   7.7    1
(FK535881) 454GmaGlobSeed270513 Soybean Seeds Containing Glo...    44   7.7    1
(FK532382) 454GmaGlobSeed267014 Soybean Seeds Containing Glo...    44   7.7    1
(FK494837) 454GmaGlobSeed229469 Soybean Seeds Containing Glo...    44   7.7    1

>(BJ352995) Dictyostelium discoideum cDNA clone:dda48j18, 3' end,
           single read.
          Length = 768

 Score =  819 bits (413), Expect(3) = 0.0
 Identities = 413/413 (100%)
 Strand = Plus / Minus


Query: 11  acaggaatttaactgtagtcaaattcttcaataatacttttaccaaagagaaagtagaaa 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 acaggaatttaactgtagtcaaattcttcaataatacttttaccaaagagaaagtagaaa 709


Query: 71  aagaaccagttatctggaagaatgcatgggatataacaactctttcagtttctatgaata 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 aagaaccagttatctggaagaatgcatgggatataacaactctttcagtttctatgaata 649


Query: 131 attaccaatgtttactgatgccattcttgaaaattgttgatgaggatgaagatgattgga 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 attaccaatgtttactgatgccattcttgaaaattgttgatgaggatgaagatgattgga 589


Query: 191 aagaccatagatttttaaaactcgtcgaattagcctgtcttagatttgcgagagctggct 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 aagaccatagatttttaaaactcgtcgaattagcctgtcttagatttgcgagagctggct 529


Query: 251 acaagcatttagaccttaagagaagacatgttgctagacattctacccccaacaatgata 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 acaagcatttagaccttaagagaagacatgttgctagacattctacccccaacaatgata 469


Query: 311 gagtcgttgtatttatagacctttcatctgtagatcctatagatccactagatattgatg 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gagtcgttgtatttatagacctttcatctgtagatcctatagatccactagatattgatg 409


Query: 371 ctgtcagcaatgaaatgtaccaaactttaatagatgaaggacgaacaaaagat 423
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ctgtcagcaatgaaatgtaccaaactttaatagatgaaggacgaacaaaagat 356

 Score =  325 bits (164), Expect(3) = 0.0
 Identities = 164/164 (100%)
 Strand = Plus / Minus


Query: 493 ttaactcgtagtaaaactcgtaaagaaaaagaggaaacatcaccacaaccaacaaaaaat 552
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ttaactcgtagtaaaactcgtaaagaaaaagaggaaacatcaccacaaccaacaaaaaat 227


Query: 553 actcatgaaatttcaaacgaagtatttcaaacaccaattaaaaaatataaggcagaagat 612
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 actcatgaaatttcaaacgaagtatttcaaacaccaattaaaaaatataaggcagaagat 167


Query: 613 aaagattaagatttttgaaattattcaccaaaatatttattttg 656
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 aaagattaagatttttgaaattattcaccaaaatatttattttg 123

 Score =  226 bits (114), Expect(3) = 0.0
 Identities = 114/114 (100%)
 Strand = Plus / Minus


Query: 664 ttagacttttctcacctatgtgggaaaaagccacgtggtgagtttttaatgtcgattgaa 723
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 ttagacttttctcacctatgtgggaaaaagccacgtggtgagtttttaatgtcgattgaa 56


Query: 724 aaactcataaacatattttaaatctcaagtataaaaattttcaatagtaaaaaa 777
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55  aaactcataaacatattttaaatctcaagtataaaaattttcaatagtaaaaaa 2

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 944,190,653
Number of extensions: 59516331
Number of successful extensions: 4820363
Number of sequences better than 10.0: 128
Length of query: 777
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 753
Effective length of database: 97,308,875,965
Effective search space: 73273583601645
Effective search space used: 73273583601645
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 9
Homology vs Protein 
Query= Contig-U14089-1 (Contig-U14089-1Q) /CSM_Contig/Contig-U14089-1Q.Seq.d
         (777 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116956_83(AC116956|pid:none) Dictyostelium discoideum chromoso...   374   e-102
CR628336_2037(CR628336|pid:none) Legionella pneumophila str. Par...    36   1.2
AE017354_2011(AE017354|pid:none) Legionella pneumophila subsp. p...    36   1.2
CR628337_2038(CR628337|pid:none) Legionella pneumophila str. Len...    35   3.5
EF204526_9(EF204526|pid:none) Salmonella enterica subsp. enteric...    33   7.8

>AC116956_83(AC116956|pid:none) Dictyostelium discoideum chromosome
           2 map 1418423-1684967 strain AX4, complete sequence.
          Length = 434

 Score =  374 bits (960), Expect = e-102
 Identities = 185/202 (91%), Positives = 185/202 (91%)
 Frame = +1

Query: 13  RNLTVVKFFNNTFTKEKVEKEPVIWKNAWDITTLSVSMNNYQCLLMPFLKIVDEDEDDWK 192
           RNLTVVKFFNNTFTKEKVEKE VIWKNAWDITTLSVSMNNYQCLLMPFLKIVDEDEDDWK
Sbjct: 233 RNLTVVKFFNNTFTKEKVEKETVIWKNAWDITTLSVSMNNYQCLLMPFLKIVDEDEDDWK 292

Query: 193 DHRFLKLVELACLRFARAGYKHLDLKRRHVARHSTPNNDRVVVFIDLSSVDPIDPLDIDA 372
           DHRFLKLVELACLRFARAGYKHLDLKRRHVARHSTPNNDRVVVFIDLSSVDPIDPLDIDA
Sbjct: 293 DHRFLKLVELACLRFARAGYKHLDLKRRHVARHSTPNNDRVVVFIDLSSVDPIDPLDIDA 352

Query: 373 VSNEMYQTLIDEGRTKDPPPQTVKQIXXXXXXXXXXXXXXXXRSKTRKEKEETSPQPTKN 552
           VSNEMYQTLIDEGRTKDPPPQTVKQI                RSKTRKEKEETSPQPTKN
Sbjct: 353 VSNEMYQTLIDEGRTKDPPPQTVKQIQLPPQTGKPQPQPPLTRSKTRKEKEETSPQPTKN 412

Query: 553 THEISNEVFQTPIKKYKAEDKD 618
           THEISNEVFQTPIKKYKAEDKD
Sbjct: 413 THEISNEVFQTPIKKYKAEDKD 434

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,061,967,460
Number of extensions: 19018988
Number of successful extensions: 41054
Number of sequences better than 10.0: 5
Number of HSP's gapped: 41042
Number of HSP's successfully gapped: 5
Length of query: 259
Length of database: 1,051,180,864
Length adjustment: 126
Effective length of query: 133
Effective length of database: 643,374,430
Effective search space: 85568799190
Effective search space used: 85568799190
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.70  gvh: 0.41  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.00
 nuc: 0.07  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: extracellular, including cell wall

>> prediction for Contig-U14089-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0