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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U14079-1
Contig ID Contig-U14079-1
Contig update 2002.12.18
Contig sequence 
>Contig-U14079-1 (Contig-U14079-1Q) /CSM_Contig/Contig-U14079-1Q.Seq.d
NNNNNNNNNNCAAGAAATAATTGCACAATCAAATGATATTGAATCTCTAA
AAAAGAATTTAACCATGAAATATTTTGATTTAGAAAGAAAAGATCTCCCA
TATCCAACCACAGTTTGCACAAATTCAACATGTGTCACACCTATTACTAT
AAAGGGAGTTGTAAATATTACTTATACAACTCAATGTCATGTAAAATGCC
TTATAAAAGGAACAACAAATACTATAAATTGTTTGGATTTGAAAGATTGT
TATGCGATGAACAATACATTGTATTGCAAAGAGTGTAAATTCAATTGTCA
TTATTCAAAACATATGCATATCACATATGAAACATTTTTAATTAAAAAGG
AAATGGAAAACGAAGATGTTAAAAAACAAATTGAAGAAGGAATTGATGCA
ACATCTTTGAAAAGACAATGGGTTGAATCCTTAGAGAAAGAAATTAAGGA
AAATACTGATGAGAAAAATGAAATACTTAAAATTAGCTCACAACTTTCAT
ACTTTTTAAAAGAAAATTGCATTACAACATACCATGATACAAATCATTCA
AAAGAATGGGGTTTTATTTCT
Gap no gap
Contig length 571
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 1420461
End point 1420993
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U14079
List of clone(s) 

est1=AHI251Z,1,562
Translated Amino Acid sequence 
XXXQEIIAQSNDIESLKKNLTMKYFDLERKDLPYPTTVCTNSTCVTPITIKGVVNITYTT
QCHVKCLIKGTTNTINCLDLKDCYAMNNTLYCKECKFNCHYSKHMHITYETFLIKKEMEN
EDVKKQIEEGIDATSLKRQWVESLEKEIKENTDEKNEILKISSQLSYFLKENCITTYHDT
NHSKEWGFIS
Translated Amino Acid sequence (All Frames) 
Frame A:
xxxxrnnctik*y*iskkefnheif*frkkrspisnhslhkfnmchtyyykgsckyylyn
smsckmpykrnnkyyklfgferllcdeqyivlqrv*iqlslfktyayhi*nifn*kgngk
rrc*ktn*rrn*cnifektmg*ilrern*gky**ek*nt*n*lttfilfkrklhynip*y
ksfkrmgfyf


Frame B:
XXXQEIIAQSNDIESLKKNLTMKYFDLERKDLPYPTTVCTNSTCVTPITIKGVVNITYTT
QCHVKCLIKGTTNTINCLDLKDCYAMNNTLYCKECKFNCHYSKHMHITYETFLIKKEMEN
EDVKKQIEEGIDATSLKRQWVESLEKEIKENTDEKNEILKISSQLSYFLKENCITTYHDT
NHSKEWGFIS


Frame C:
xxxkk*lhnqmilnl*kri*p*nili*kekishiqpqfaqiqhvshlll*rel*illiql
nvm*nal*keqqil*ivwi*kivmr*tihciaksvnsiviiqnicishmkhf*lkrkwkt
kmlknklkkelmqhl*kdnglnp*rkklrkilmrkmkylklahnfhtf*kkialqhtmiq
iiqkngvlf
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U14079-1 (Contig-U14079-1Q)
/CSM_Contig/Contig-U14079-1Q.Seq.d
         (571 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U14079-1 (Contig-U14079-1Q) /CSM_Contig/Conti...  1112  0.0
Contig-U13922-1 (Contig-U13922-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U10243-1 (Contig-U10243-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U08947-1 (Contig-U08947-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U14621-1 (Contig-U14621-1Q) /CSM_Contig/Conti...    34  0.16
Contig-U11865-1 (Contig-U11865-1Q) /CSM_Contig/Conti...    34  0.16
Contig-U11856-1 (Contig-U11856-1Q) /CSM_Contig/Conti...    34  0.16
Contig-U11195-1 (Contig-U11195-1Q) /CSM_Contig/Conti...    34  0.16
Contig-U10874-1 (Contig-U10874-1Q) /CSM_Contig/Conti...    34  0.16
Contig-U09422-1 (Contig-U09422-1Q) /CSM_Contig/Conti...    34  0.16

>Contig-U14079-1 (Contig-U14079-1Q) /CSM_Contig/Contig-U14079-1Q.Seq.d
          Length = 571

 Score = 1112 bits (561), Expect = 0.0
 Identities = 561/561 (100%)
 Strand = Plus / Plus

                                                                       
Query: 11  caagaaataattgcacaatcaaatgatattgaatctctaaaaaagaatttaaccatgaaa 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11  caagaaataattgcacaatcaaatgatattgaatctctaaaaaagaatttaaccatgaaa 70

                                                                       
Query: 71  tattttgatttagaaagaaaagatctcccatatccaaccacagtttgcacaaattcaaca 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71  tattttgatttagaaagaaaagatctcccatatccaaccacagtttgcacaaattcaaca 130

                                                                       
Query: 131 tgtgtcacacctattactataaagggagttgtaaatattacttatacaactcaatgtcat 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 tgtgtcacacctattactataaagggagttgtaaatattacttatacaactcaatgtcat 190

                                                                       
Query: 191 gtaaaatgccttataaaaggaacaacaaatactataaattgtttggatttgaaagattgt 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 gtaaaatgccttataaaaggaacaacaaatactataaattgtttggatttgaaagattgt 250

                                                                       
Query: 251 tatgcgatgaacaatacattgtattgcaaagagtgtaaattcaattgtcattattcaaaa 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tatgcgatgaacaatacattgtattgcaaagagtgtaaattcaattgtcattattcaaaa 310

                                                                       
Query: 311 catatgcatatcacatatgaaacatttttaattaaaaaggaaatggaaaacgaagatgtt 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 catatgcatatcacatatgaaacatttttaattaaaaaggaaatggaaaacgaagatgtt 370

                                                                       
Query: 371 aaaaaacaaattgaagaaggaattgatgcaacatctttgaaaagacaatgggttgaatcc 430
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 aaaaaacaaattgaagaaggaattgatgcaacatctttgaaaagacaatgggttgaatcc 430

                                                                       
Query: 431 ttagagaaagaaattaaggaaaatactgatgagaaaaatgaaatacttaaaattagctca 490
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ttagagaaagaaattaaggaaaatactgatgagaaaaatgaaatacttaaaattagctca 490

                                                                       
Query: 491 caactttcatactttttaaaagaaaattgcattacaacataccatgatacaaatcattca 550
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 caactttcatactttttaaaagaaaattgcattacaacataccatgatacaaatcattca 550

                                
Query: 551 aaagaatggggttttatttct 571
           |||||||||||||||||||||
Sbjct: 551 aaagaatggggttttatttct 571


 Score = 28.2 bits (14), Expect = 9.7
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 335 tttttaattaaaaa 348
           ||||||||||||||
Sbjct: 348 tttttaattaaaaa 335


>Contig-U13922-1 (Contig-U13922-1Q) /CSM_Contig/Contig-U13922-1Q.Seq.d
          Length = 1216

 Score = 36.2 bits (18), Expect = 0.040
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 539 acaaatcattcaaaagaa 556
           ||||||||||||||||||
Sbjct: 876 acaaatcattcaaaagaa 893


>Contig-U10243-1 (Contig-U10243-1Q) /CSM_Contig/Contig-U10243-1Q.Seq.d
          Length = 1161

 Score = 36.2 bits (18), Expect = 0.040
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 403 atctttgaaaagacaatg 420
           ||||||||||||||||||
Sbjct: 520 atctttgaaaagacaatg 537


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,016
Number of Sequences: 6905
Number of extensions: 10016
Number of successful extensions: 1057
Number of sequences better than 10.0: 334
length of query: 571
length of database: 5,674,871
effective HSP length: 16
effective length of query: 555
effective length of database: 5,564,391
effective search space: 3088237005
effective search space used: 3088237005
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.12.18
Homology vs DNA 
Query= Contig-U14079-1 (Contig-U14079-1Q) /CSM_Contig/Contig-U14079-1Q.Seq.d
         (571 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ352676) Dictyostelium discoideum cDNA clone:dda47e14, 3' ...  1112   0.0    1
(BJ403735) Dictyostelium discoideum cDNA clone:dds26i05, 3' ...  1053   0.0    1
(BJ403436) Dictyostelium discoideum cDNA clone:dds25j06, 3' ...  1053   0.0    1
(BJ355219) Dictyostelium discoideum cDNA clone:dda56i04, 3' ...  1053   0.0    1
(BJ354989) Dictyostelium discoideum cDNA clone:dda55k07, 3' ...  1053   0.0    1
(BJ354609) Dictyostelium discoideum cDNA clone:dda54n02, 3' ...  1053   0.0    1
(BJ354183) Dictyostelium discoideum cDNA clone:dda52f19, 3' ...  1053   0.0    1
(BJ353391) Dictyostelium discoideum cDNA clone:dda50b05, 3' ...  1053   0.0    1
(BJ352107) Dictyostelium discoideum cDNA clone:dda45l16, 3' ...  1053   0.0    1
(BJ351227) Dictyostelium discoideum cDNA clone:dda42a14, 3' ...  1053   0.0    1
(BJ351167) Dictyostelium discoideum cDNA clone:dda42d09, 3' ...  1053   0.0    1
(BJ349753) Dictyostelium discoideum cDNA clone:dda37d17, 3' ...  1053   0.0    1
(BJ343309) Dictyostelium discoideum cDNA clone:dda22n13, 3' ...  1053   0.0    1
(BJ405187) Dictyostelium discoideum cDNA clone:dds30j21, 3' ...  1045   0.0    1
(BJ404642) Dictyostelium discoideum cDNA clone:dds29m02, 3' ...  1045   0.0    1
(BJ378573) Dictyostelium discoideum cDNA clone:ddc32l06, 3' ...  1045   0.0    1
(BJ353242) Dictyostelium discoideum cDNA clone:dda49p09, 3' ...  1045   0.0    1
(BJ351389) Dictyostelium discoideum cDNA clone:dda43c11, 3' ...  1023   0.0    1
(BJ382856) Dictyostelium discoideum cDNA clone:ddc46h04, 3' ...   977   0.0    3
(BJ405811) Dictyostelium discoideum cDNA clone:dds33h01, 3' ...  1001   0.0    2
(BJ357492) Dictyostelium discoideum cDNA clone:dda63a19, 3' ...   971   0.0    1
(BJ357069) Dictyostelium discoideum cDNA clone:dda62i10, 3' ...   971   0.0    1
(BJ357294) Dictyostelium discoideum cDNA clone:dda63g04, 3' ...   902   0.0    1
(BJ381989) Dictyostelium discoideum cDNA clone:ddc43e15, 3' ...   882   0.0    1
(BJ386856) Dictyostelium discoideum cDNA clone:dds11b05, 5' ...   837   0.0    1
(BJ355717) Dictyostelium discoideum cDNA clone:dda58a06, 3' ...   779   0.0    2
(BJ352618) Dictyostelium discoideum cDNA clone:dda47g10, 3' ...   777   0.0    2
(BJ353182) Dictyostelium discoideum cDNA clone:dda49b12, 3' ...   775   0.0    2
(BJ405196) Dictyostelium discoideum cDNA clone:dds30k24, 3' ...   779   0.0    2
(BJ349838) Dictyostelium discoideum cDNA clone:dda37f22, 3' ...   763   0.0    2
(BJ353295) Dictyostelium discoideum cDNA clone:dda49k17, 3' ...   761   0.0    2
(BJ349694) Dictyostelium discoideum cDNA clone:dda37i07, 3' ...   652   0.0    3
(BJ350127) Dictyostelium discoideum cDNA clone:dda38g19, 3' ...   646   0.0    3
(BJ348926) Dictyostelium discoideum cDNA clone:dda34f19, 3' ...   646   0.0    3
(BJ348008) Dictyostelium discoideum cDNA clone:dda31k24, 3' ...   646   0.0    3
(BJ349781) Dictyostelium discoideum cDNA clone:dda37j15, 3' ...   646   0.0    3
(BJ351930) Dictyostelium discoideum cDNA clone:dda45f03, 3' ...   646   0.0    3
(BJ353297) Dictyostelium discoideum cDNA clone:dda49l18, 3' ...   731   0.0    2
(BJ405291) Dictyostelium discoideum cDNA clone:dds31o04, 3' ...   646   0.0    3
(BJ348757) Dictyostelium discoideum cDNA clone:dda34c11, 3' ...   646   0.0    3
(BJ356347) Dictyostelium discoideum cDNA clone:dda60d06, 3' ...   739   0.0    2
(BJ349717) Dictyostelium discoideum cDNA clone:dda37m10, 3' ...   708   0.0    3
(BJ358081) Dictyostelium discoideum cDNA clone:dda65o13, 3' ...   769   0.0    1
(BJ380982) Dictyostelium discoideum cDNA clone:ddc39o22, 3' ...   646   0.0    3
(BJ350004) Dictyostelium discoideum cDNA clone:dda38j07, 3' ...   724   0.0    2
(BJ406790) Dictyostelium discoideum cDNA clone:dds36o07, 3' ...   724   0.0    2
(BJ354176) Dictyostelium discoideum cDNA clone:dda52d22, 3' ...   735   0.0    2
(BJ403506) Dictyostelium discoideum cDNA clone:dds25h12, 3' ...   646   0.0    4
(BJ382992) Dictyostelium discoideum cDNA clone:ddc46c16, 3' ...   761   0.0    1
(BJ355544) Dictyostelium discoideum cDNA clone:dda57n11, 3' ...   646   0.0    4
(BJ349380) Dictyostelium discoideum cDNA clone:dda36f11, 3' ...   638   0.0    4
(BJ358309) Dictyostelium discoideum cDNA clone:dda56o21, 3' ...   714   0.0    2
(BJ348289) Dictyostelium discoideum cDNA clone:dda32c24, 3' ...   706   0.0    2
(BJ344637) Dictyostelium discoideum cDNA clone:dda20a05, 3' ...   706   0.0    2
(BJ357619) Dictyostelium discoideum cDNA clone:dda64l06, 3' ...   704   0.0    2
(BJ355636) Dictyostelium discoideum cDNA clone:dda57a24, 3' ...   702   0.0    2
(BJ350165) Dictyostelium discoideum cDNA clone:dda38p20, 3' ...   646   0.0    4
(BJ349183) Dictyostelium discoideum cDNA clone:dda35m15, 3' ...   702   0.0    2
(BJ342087) Dictyostelium discoideum cDNA clone:dda9p09, 3' e...   696   0.0    2
(BJ351925) Dictyostelium discoideum cDNA clone:dda45e03, 3' ...   646   0.0    3
(BJ350798) Dictyostelium discoideum cDNA clone:dda41g01, 3' ...   700   0.0    2
(BJ355956) Dictyostelium discoideum cDNA clone:dda58c24, 3' ...   694   0.0    2
(BJ352225) Dictyostelium discoideum cDNA clone:dda46f06, 3' ...   646   0.0    3
(BJ349704) Dictyostelium discoideum cDNA clone:dda37k07, 3' ...   698   0.0    2
(BJ349238) Dictyostelium discoideum cDNA clone:dda35h20, 3' ...   646   0.0    3
(BJ348801) Dictyostelium discoideum cDNA clone:dda34m09, 3' ...   692   0.0    2
(BJ354211) Dictyostelium discoideum cDNA clone:dda52l21, 3' ...   646   0.0    4
(BJ350436) Dictyostelium discoideum cDNA clone:dda39i21, 3' ...   646   0.0    3
(BJ348193) Dictyostelium discoideum cDNA clone:dda32p09, 3' ...   646   0.0    3
(BJ350343) Dictyostelium discoideum cDNA clone:dda39d15, 3' ...   646   0.0    3
(BJ349961) Dictyostelium discoideum cDNA clone:dda38p04, 3' ...   646   0.0    3
(BJ349600) Dictyostelium discoideum cDNA clone:dda37c06, 3' ...   646   0.0    3
(BJ354372) Dictyostelium discoideum cDNA clone:dda53l10, 3' ...   646   0.0    3
(BJ354621) Dictyostelium discoideum cDNA clone:dda54p05, 3' ...   646   0.0    3
(BJ351916) Dictyostelium discoideum cDNA clone:dda45c06, 3' ...   646   0.0    3
(BJ353208) Dictyostelium discoideum cDNA clone:dda49h09, 3' ...   646   0.0    3
(BJ348641) Dictyostelium discoideum cDNA clone:dda33i23, 3' ...   638   0.0    3
(BJ348142) Dictyostelium discoideum cDNA clone:dda32f11, 3' ...   646   0.0    3
(BJ349810) Dictyostelium discoideum cDNA clone:dda37p16, 3' ...   646   0.0    3
(BJ352553) Dictyostelium discoideum cDNA clone:dda47k03, 3' ...   646   0.0    3
(BJ353650) Dictyostelium discoideum cDNA clone:dda51a04, 3' ...   646   0.0    3
(BJ352820) Dictyostelium discoideum cDNA clone:dda48c06, 3' ...   646   0.0    3
(BJ351923) Dictyostelium discoideum cDNA clone:dda45e01, 3' ...   674   0.0    2
(BJ354319) Dictyostelium discoideum cDNA clone:dda53a11, 3' ...   646   0.0    3
(BJ345616) Dictyostelium discoideum cDNA clone:dda28b11, 3' ...   638   0.0    3
(BJ409010) Dictyostelium discoideum cDNA clone:dds47p16, 3' ...   638   0.0    3
(BJ404034) Dictyostelium discoideum cDNA clone:dds27h05, 3' ...   601   0.0    4
(BJ348420) Dictyostelium discoideum cDNA clone:dda33m04, 3' ...   674   0.0    2
(BJ386201) Dictyostelium discoideum cDNA clone:ddc57o11, 3' ...   646   0.0    3
(BJ404624) Dictyostelium discoideum cDNA clone:dds29i06, 3' ...   664   0.0    2
(BJ353990) Dictyostelium discoideum cDNA clone:dda52l04, 3' ...   613   0.0    4
(BJ347801) Dictyostelium discoideum cDNA clone:dda31p06, 3' ...   662   0.0    2
(BJ352968) Dictyostelium discoideum cDNA clone:dda48d14, 3' ...   658   0.0    2
(BJ356611) Dictyostelium discoideum cDNA clone:dda60j19, 3' ...   339   0.0    4
(BJ332352) Dictyostelium discoideum cDNA clone:dda38g19, 5' ...   700   0.0    1
(BJ357825) Dictyostelium discoideum cDNA clone:dda64g22, 3' ...   640   0.0    3
(BJ354557) Dictyostelium discoideum cDNA clone:dda54b06, 3' ...   656   0.0    2
(BJ408621) Dictyostelium discoideum cDNA clone:dds46m10, 3' ...   696   0.0    1
(BJ350894) Dictyostelium discoideum cDNA clone:dda41i09, 3' ...   652   0.0    2
(BJ356033) Dictyostelium discoideum cDNA clone:dda59d01, 3' ...   646   0.0    3

>(BJ352676) Dictyostelium discoideum cDNA clone:dda47e14, 3' end,
           single read.
          Length = 562

 Score = 1112 bits (561), Expect = 0.0
 Identities = 561/561 (100%)
 Strand = Plus / Minus


Query: 11  caagaaataattgcacaatcaaatgatattgaatctctaaaaaagaatttaaccatgaaa 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 caagaaataattgcacaatcaaatgatattgaatctctaaaaaagaatttaaccatgaaa 503


Query: 71  tattttgatttagaaagaaaagatctcccatatccaaccacagtttgcacaaattcaaca 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tattttgatttagaaagaaaagatctcccatatccaaccacagtttgcacaaattcaaca 443


Query: 131 tgtgtcacacctattactataaagggagttgtaaatattacttatacaactcaatgtcat 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgtgtcacacctattactataaagggagttgtaaatattacttatacaactcaatgtcat 383


Query: 191 gtaaaatgccttataaaaggaacaacaaatactataaattgtttggatttgaaagattgt 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gtaaaatgccttataaaaggaacaacaaatactataaattgtttggatttgaaagattgt 323


Query: 251 tatgcgatgaacaatacattgtattgcaaagagtgtaaattcaattgtcattattcaaaa 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tatgcgatgaacaatacattgtattgcaaagagtgtaaattcaattgtcattattcaaaa 263


Query: 311 catatgcatatcacatatgaaacatttttaattaaaaaggaaatggaaaacgaagatgtt 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 catatgcatatcacatatgaaacatttttaattaaaaaggaaatggaaaacgaagatgtt 203


Query: 371 aaaaaacaaattgaagaaggaattgatgcaacatctttgaaaagacaatgggttgaatcc 430
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 aaaaaacaaattgaagaaggaattgatgcaacatctttgaaaagacaatgggttgaatcc 143


Query: 431 ttagagaaagaaattaaggaaaatactgatgagaaaaatgaaatacttaaaattagctca 490
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 ttagagaaagaaattaaggaaaatactgatgagaaaaatgaaatacttaaaattagctca 83


Query: 491 caactttcatactttttaaaagaaaattgcattacaacataccatgatacaaatcattca 550
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82  caactttcatactttttaaaagaaaattgcattacaacataccatgatacaaatcattca 23


Query: 551 aaagaatggggttttatttct 571
           |||||||||||||||||||||
Sbjct: 22  aaagaatggggttttatttct 2

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 898,602,591
Number of extensions: 60598273
Number of successful extensions: 5691841
Number of sequences better than 10.0: 837
Length of query: 571
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 548
Effective length of database: 93,106,754,628
Effective search space: 51022501536144
Effective search space used: 51022501536144
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 9
Homology vs Protein 
Query= Contig-U14079-1 (Contig-U14079-1Q) /CSM_Contig/Contig-U14079-1Q.Seq.d
         (571 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC114263_3(AC114263|pid:none) Dictyostelium discoideum chromosom...    57   4e-07
BC152666_1(BC152666|pid:none) Danio rerio hypothetical LOC554469...    47   4e-04
BC155593_1(BC155593|pid:none) Danio rerio zgc:172065, mRNA (cDNA...    45   0.001
AE014188_180(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    40   0.058
BC155597_1(BC155597|pid:none) Danio rerio zgc:172075, mRNA (cDNA...    39   0.076
CP000993_199(CP000993|pid:none) Borrelia recurrentis A1, complet...    39   0.13
CP000976_206(CP000976|pid:none) Borrelia duttonii Ly, complete g...    39   0.13
AL390354_21(AL390354|pid:none) Neurospora crassa DNA linkage gro...    38   0.22
AE001273_281(AE001273|pid:none) Chlamydia trachomatis D/UW-3/CX,...    37   0.38
AM884176_525(AM884176|pid:none) Chlamydia trachomatis strain L2/...    37   0.38
AY040821_1(AY040821|pid:none) Loligo pealei non-muscle myosin II...    37   0.49
(Q3T168) RecName: Full=Calcyclin-binding protein;          Short...    37   0.49
(P93648) RecName: Full=Lon protease homolog 2, mitochondrial;   ...    36   0.64
EF101928_324(EF101928|pid:none) Acanthocystis turfacea Chlorella...    36   0.64
AL844506_58(AL844506|pid:none) Plasmodium falciparum 3D7 chromos...    36   0.64
CP000246_344(CP000246|pid:none) Clostridium perfringens ATCC 131...    36   0.64
FB908477_1(FB908477|pid:none) Sequence 127750 from Patent WO2008...    36   0.64
AE017194_2410(AE017194|pid:none) Bacillus cereus ATCC 10987, com...    36   0.84
AP003816_17(AP003816|pid:none) Oryza sativa Japonica Group genom...    36   0.84
CP001047_343(CP001047|pid:none) Mycoplasma arthritidis 158L3-1, ...    36   0.84
AK093848_1(AK093848|pid:none) Homo sapiens cDNA FLJ36529 fis, cl...    35   1.1
CQ783006_1(CQ783006|pid:none) Sequence 3146 from Patent EP1396543.     35   1.1
AK025904_1(AK025904|pid:none) Homo sapiens cDNA: FLJ22251 fis, c...    35   1.1
CU928169_40(CU928169|pid:none) Kluyveromyces thermotolerans stra...    35   1.1
AB071380_1(AB071380|pid:none) Lilium regale LRGLOB mRNA for MADS...    35   1.4
DQ826521_1(DQ826521|pid:none) Phlebotomus duboscqi 14 kDa saliva...    35   1.4
CP000721_4504(CP000721|pid:none) Clostridium beijerinckii NCIMB ...    35   1.4
CP000552_580(CP000552|pid:none) Prochlorococcus marinus str. MIT...    35   1.4
EF564626_1(EF564626|pid:none) Gossypium hirsutum cultivar Zhongm...    35   1.9
EF564625_1(EF564625|pid:none) Gossypium hirsutum cultivar Zhongm...    35   1.9
CP000383_1866(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334...    35   1.9
CP001083_3093(CP001083|pid:none) Clostridium botulinum Ba4 str. ...    34   2.4
CP001407_2303(CP001407|pid:none) Bacillus cereus 03BB102, comple...    34   2.4
CP000962_2938(CP000962|pid:none) Clostridium botulinum A3 str. L...    34   2.4
AB359186_1(AB359186|pid:none) Lilium formosanum x Lilium longifl...    34   3.2
CP000939_2967(CP000939|pid:none) Clostridium botulinum B1 str. O...    34   3.2
AJ720338_1(AJ720338|pid:none) Gallus gallus mRNA for hypothetica...    34   3.2
DQ005592_1(DQ005592|pid:none) Lilium martagon PISTILLATA-like pr...    34   3.2
BC163769_1(BC163769|pid:none) Danio rerio zgc:195077, mRNA (cDNA...    34   3.2
AF012901_1(AF012901|pid:none) Bos taurus plasmalemma cation chan...    34   3.2
AB179742_1(AB179742|pid:none) Bos taurus trpc1 mRNA for transien...    34   3.2
CP000485_2019(CP000485|pid:none) Bacillus thuringiensis str. Al ...    34   3.2
CP001106_473(CP001106|pid:none) Eubacterium eligens ATCC 27750 p...    33   4.2
(Q17635) RecName: Full=Kinetochore protein ndc-80;          Shor...    33   4.2
(Q57914) RecName: Full=Uncharacterized protein MJ0491;  &C64361(...    33   4.2
BT071395_1(BT071395|pid:none) Picea sitchensis clone WS0286_P11 ...    33   4.2
AF312367_1(AF312367|pid:none) Homo sapiens La binding protein 1 ...    33   4.2
CU928166_416(CU928166|pid:none) Kluyveromyces thermotolerans str...    33   4.2
AE016879_2202(AE016879|pid:none) Bacillus anthracis str. Ames, c...    33   4.2
AC149474_18(AC149474|pid:none) Medicago truncatula clone mth2-12...    33   4.2
CP001357_2168(CP001357|pid:none) Brachyspira hyodysenteriae WA1,...    33   4.2
AM412317_2969(AM412317|pid:none) Clostridium botulinum A str. AT...    33   4.2
CP000025_577(CP000025|pid:none) Campylobacter jejuni RM1221, com...    33   5.4
FN392322_73(FN392322|pid:none) Pichia pastoris GS115 chromosome ...    33   5.4
AP003791_12(AP003791|pid:none) Oryza sativa Japonica Group genom...    33   5.4
AL844506_181(AL844506|pid:none) Plasmodium falciparum 3D7 chromo...    33   5.4
AC150798_12(AC150798|pid:none) Medicago truncatula chromosome 2 ...    33   7.1
CP000348_615(CP000348|pid:none) Leptospira borgpetersenii serova...    33   7.1
AL844509_259(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    33   7.1
BA000001_105(BA000001|pid:none) Pyrococcus horikoshii OT3 DNA, c...    33   7.1
CP000721_872(CP000721|pid:none) Clostridium beijerinckii NCIMB 8...    33   7.1
AP008207_2563(AP008207|pid:none) Oryza sativa (japonica cultivar...    33   7.1
CP001130_964(CP001130|pid:none) Hydrogenobaculum sp. Y04AAS1, co...    33   7.1
AY162897_1(AY162897|pid:none) Trollius laxus PI-1 type 2 mRNA, p...    33   7.1
(B8E2N5) RecName: Full=Queuine tRNA-ribosyltransferase;         ...    33   7.1
CP001139_440(CP001139|pid:none) Vibrio fischeri MJ11 chromosome ...    33   7.1
AY224532_1(AY224532|pid:none) Oryza sativa (japonica cultivar-gr...    33   7.1
CP000742_643(CP000742|pid:none) Methanococcus vannielii SB, comp...    33   7.1
DQ641916_1(DQ641916|pid:none) Oryza sativa (japonica cultivar-gr...    33   7.1
CP000020_449(CP000020|pid:none) Vibrio fischeri ES114 chromosome...    33   7.1
AY162878_1(AY162878|pid:none) Helleborus orientalis PI-1 mRNA, p...    33   7.1
AP003375_16(AP003375|pid:none) Oryza sativa Japonica Group genom...    33   7.1
FM992695_124(FM992695|pid:none) Candida dubliniensis CD36 chromo...    33   7.1
AE014188_370(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    32   9.3
BC050451_1(BC050451|pid:none) Homo sapiens U2 small nuclear RNA ...    32   9.3
FJ406774_1(FJ406774|pid:none) Plasmodium falciparum isolate T9/1...    32   9.3
(Q15696) RecName: Full=U2 small nuclear ribonucleoprotein auxili...    32   9.3
CP000088_1235(CP000088|pid:none) Thermobifida fusca YX, complete...    32   9.3
AE015927_2086(AE015927|pid:none) Clostridium tetani E88, complet...    32   9.3
(Q03338) RecName: Full=U4/U6 small nuclear ribonucleoprotein PRP...    32   9.3
AY518891_1(AY518891|pid:none) Plasmodium falciparum merozoite su...    32   9.3
CP001357_1429(CP001357|pid:none) Brachyspira hyodysenteriae WA1,...    32   9.3
T18450(T18450)hypothetical protein C0570c - malaria parasite (Pl...    32   9.3
AE001362_187(AE001362|pid:none) Plasmodium falciparum 3D7 chromo...    32   9.3
(Q99359) RecName: Full=Protein RAD61; AltName: Full=Radiation se...    32   9.3
AX647827_1(AX647827|pid:none) Sequence 2019 from Patent EP1270724.     32   9.3
AM466378_2(AM466378|pid:none) Vitis vinifera contig VV78X244075....    32   9.3
EF489475_1(EF489475|pid:none) Aquilegia vulgaris MADS transcript...    32   9.3
AK172869_1(AK172869|pid:none) Mus musculus premature mRNA for mK...    32   9.3
AE014185_343(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    32   9.3
FJ406787_1(FJ406787|pid:none) Plasmodium falciparum isolate 7G8 ...    32   9.3
AY162852_1(AY162852|pid:none) Aquilegia alpina PI mRNA, partial ...    32   9.3
CP001524_100(CP001524|pid:none) Borrelia sp. SV1 plasmid SV1_lp5...    32   9.3
AL844504_97(AL844504|pid:none) Plasmodium falciparum 3D7 chromos...    32   9.3
FJ406779_1(FJ406779|pid:none) Plasmodium falciparum isolate MAD2...    32   9.3
FJ406780_1(FJ406780|pid:none) Plasmodium falciparum isolate K1 m...    32   9.3
FJ406773_1(FJ406773|pid:none) Plasmodium falciparum isolate W2me...    32   9.3
FJ406785_1(FJ406785|pid:none) Plasmodium falciparum isolate D10 ...    32   9.3
AY871944_1(AY871944|pid:none) Synthetic construct hypothetical p...    32   9.3
FJ406776_1(FJ406776|pid:none) Plasmodium falciparum isolate T9/9...    32   9.3
FJ406777_1(FJ406777|pid:none) Plasmodium falciparum isolate RO33...    32   9.3
FJ406786_1(FJ406786|pid:none) Plasmodium falciparum isolate D6 m...    32   9.3
AE000783_829(AE000783|pid:none) Borrelia burgdorferi B31, comple...    32   9.3
CP000764_882(CP000764|pid:none) Bacillus cereus subsp. cytotoxis...    32   9.3
FJ406783_1(FJ406783|pid:none) Plasmodium falciparum isolate FCC2...    32   9.3
AL008970_32(AL008970|pid:none) Plasmodium falciparum MAL3P4.  &A...    32   9.3
AL138645_7(AL138645|pid:none) Arabidopsis thaliana DNA chromosom...    32   9.3

>AC114263_3(AC114263|pid:none) Dictyostelium discoideum chromosome 2
           map 215673-367476 strain AX4, complete sequence.
          Length = 755

 Score = 57.0 bits (136), Expect = 4e-07
 Identities = 43/184 (23%), Positives = 89/184 (48%), Gaps = 16/184 (8%)
 Frame = +2

Query: 35  DIESLKKNLTMKYFDLERKDLPYPTTVCTNSTCVTPITIKGVVNITYTTQCHVKCLIKGT 214
           +I+ LKK L   + +++  +L    T+CTN  C++  T + +V  T   Q         T
Sbjct: 393 EIDQLKKRLYTPFVNIKSLELDKRATICTNLKCIS--TTEKLVT-TKDGQIKKLGYCCNT 449

Query: 215 TNTINCLDLKDCYAMNNTLYCKECKFNCHYSKHMHITYETFLIKKEME------------ 358
            N  +   +  C ++    +CK C  +C+++KH++I  +T  I++E++
Sbjct: 450 CNASSGKSVYSCKSIGLLGFCKVC--SCYFTKHINI--DTIEIREEIQLPLFNDDDDDGG 505

Query: 359 ----NEDVKKQIEEGIDATSLKRQWVESLEKEIKENTDEKNEILKISSQLSYFLKENCIT 526
                E +K  I+   + + + + +++SL+  +++  +E N +   S Q S FL +N +
Sbjct: 506 GDSNEEGIKLSIKSKEEQSRISKDFLKSLQDRVEQYQNELNILTCSSVQFSSFLCKNSLL 565

Query: 527 TYHD 538
            Y+D
Sbjct: 566 EYND 569

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 800,643,199
Number of extensions: 14249844
Number of successful extensions: 50204
Number of sequences better than 10.0: 107
Number of HSP's gapped: 50087
Number of HSP's successfully gapped: 107
Length of query: 190
Length of database: 1,051,180,864
Length adjustment: 121
Effective length of query: 69
Effective length of database: 659,557,225
Effective search space: 45509448525
Effective search space used: 45509448525
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.75  gvh: 0.39  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U14079-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0