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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U14070-1
Contig ID Contig-U14070-1
Contig update 2002.12.18
Contig sequence 
>Contig-U14070-1 (Contig-U14070-1Q) /CSM_Contig/Contig-U14070-1Q.Seq.d
TTTAGATGAAATTAATTCAATTAGTTTTTTAGGAAAAACATTTTATATAA
ACTGGGATTTAAGGAGTGGGAATATATGTTCAAATAAAGGAATAATTTGT
GATTCCACAAATTCAACAACCAAAAAAATAATAATAGATGAAACACTACC
AAATGGAGAGGGTATACCACCAAATGTAACATTACCAGAAGGAGACATTT
TATCTCTNNNNNNNNN
Gap no gap
Contig length 216
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 7689906
End point 7690112
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U14070
List of clone(s) 

est1=AHH180F,1,207
Translated Amino Acid sequence 
LDEINSISFLGKTFYINWDLRSGNICSNKGIICDSTNSTTKKIIIDETLPNGEGIPPNVT
LPEGDILSLXX
Translated Amino Acid sequence (All Frames) 
Frame A:
fr*n*fn*ffrknilyklgfkeweymfk*rnnl*fhkfnnqknnnr*nttkwrgyttkcn
itrrrhfisxxx


Frame B:
LDEINSISFLGKTFYINWDLRSGNICSNKGIICDSTNSTTKKIIIDETLPNGEGIPPNVT
LPEGDILSLXX


Frame C:
*mkliqlvf*ekhfi*tgi*gvgiyvqike*fvipqiqqpkk***mkhyqmervyhqm*h
yqketfylxxx
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U14070-1 (Contig-U14070-1Q)
/CSM_Contig/Contig-U14070-1Q.Seq.d
         (216 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U14070-1 (Contig-U14070-1Q) /CSM_Contig/Conti...   369  e-103
Contig-U11622-1 (Contig-U11622-1Q) /CSM_Contig/Conti...    46  1e-05
Contig-U12131-1 (Contig-U12131-1Q) /CSM_Contig/Conti...    36  0.014
Contig-U13760-1 (Contig-U13760-1Q) /CSM_Contig/Conti...    34  0.057
Contig-U09353-1 (Contig-U09353-1Q) /CSM_Contig/Conti...    34  0.057
Contig-U01591-1 (Contig-U01591-1Q) /CSM_Contig/Conti...    34  0.057
Contig-U13257-1 (Contig-U13257-1Q) /CSM_Contig/Conti...    32  0.23
Contig-U11982-1 (Contig-U11982-1Q) /CSM_Contig/Conti...    32  0.23
Contig-U11348-1 (Contig-U11348-1Q) /CSM_Contig/Conti...    32  0.23
Contig-U10961-1 (Contig-U10961-1Q) /CSM_Contig/Conti...    32  0.23

>Contig-U14070-1 (Contig-U14070-1Q) /CSM_Contig/Contig-U14070-1Q.Seq.d
          Length = 216

 Score =  369 bits (186), Expect = e-103
 Identities = 200/207 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttagatgaaattaattcaattagttttttaggaaaaacattttatataaactgggattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tttagatgaaattaattcaattagttttttaggaaaaacattttatataaactgggattt 60

                                                                       
Query: 61  aaggagtgggaatatatgttcaaataaaggaataatttgtgattccacaaattcaacaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aaggagtgggaatatatgttcaaataaaggaataatttgtgattccacaaattcaacaac 120

                                                                       
Query: 121 cnnnnnnntaataatagatgaaacactaccaaatggagagggtataccaccaaatgtaac 180
           |       ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caaaaaaataataatagatgaaacactaccaaatggagagggtataccaccaaatgtaac 180

                                      
Query: 181 attaccagaaggagacattttatctct 207
           |||||||||||||||||||||||||||
Sbjct: 181 attaccagaaggagacattttatctct 207


>Contig-U11622-1 (Contig-U11622-1Q) /CSM_Contig/Contig-U11622-1Q.Seq.d
          Length = 1351

 Score = 46.1 bits (23), Expect = 1e-05
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 147  taccaaatggagagggtataccaccaa 173
            ||||||||||||| |||||||||||||
Sbjct: 1030 taccaaatggagaaggtataccaccaa 1004


>Contig-U12131-1 (Contig-U12131-1Q) /CSM_Contig/Contig-U12131-1Q.Seq.d
          Length = 1410

 Score = 36.2 bits (18), Expect = 0.014
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 10  aattaattcaattagtttttta 31
           |||||||||||||| |||||||
Sbjct: 430 aattaattcaattaatttttta 409


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3142
Number of Sequences: 6905
Number of extensions: 3142
Number of successful extensions: 1100
Number of sequences better than 10.0: 137
length of query: 216
length of database: 5,674,871
effective HSP length: 15
effective length of query: 201
effective length of database: 5,571,296
effective search space: 1119830496
effective search space used: 1119830496
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.12.17
Homology vs DNA 
Query= Contig-U14070-1 (Contig-U14070-1Q) /CSM_Contig/Contig-U14070-1Q.Seq.d
         (216 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ334327) Dictyostelium discoideum cDNA clone:dda45o19, 5' ...   240   e-100  2
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...   155   2e-43  7
(AC096509) Homo sapiens X BAC RP11-454K24 (Roswell Park Canc...    50   0.031  1
(AC073858) Homo sapiens chromosome X clone RP11-261M11, WORK...    50   0.031  1
(AC184820) Canis Familiaris chromosome 21, clone XX-43D15, c...    40   0.084  2
(AC158108) Bos taurus clone CH240-50E4, WORKING DRAFT SEQUEN...    48   0.12   1
(AF272705) Arabidopsis thaliana BAC F4I4.                          46   0.48   1
(CS255973) Sequence 1 from Patent EP1621547.                       46   0.48   1
(A58932) Sequence 1 from Patent WO9641877.                         46   0.48   1
(AR916605) Sequence 1 from patent US 7056518.                      46   0.48   1
(AR131271) Sequence 1 from patent US 6191270.                      46   0.48   1
(CU210894) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   0.48   1
(BJ376362) Dictyostelium discoideum cDNA clone:ddc28p04, 3' ...    46   0.48   1
(CP000111) Prochlorococcus marinus str. MIT 9312, complete g...    36   0.87   2
(EK241727) 1095460228138 Global-Ocean-Sampling_GS-31-01-01-1...    32   1.3    2
(CR735143) Zebrafish DNA sequence from clone CH211-244P16 in...    44   1.9    1
(CU462990) RP43-40C9, complete sequence.                           44   1.9    1
(AB011667) Ipomoea purpurea genes for dihydroflavonol 4-redu...    44   1.9    1
(AC097060) Homo sapiens chromosome 1 clone RP11-412H9, compl...    44   1.9    1
(AC026877) Homo sapiens 3 BAC RP11-550F7 (Roswell Park Cance...    44   1.9    1
(CU694597) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   1.9    1
(AC087470) Homo sapiens chromosome 15 clone RP11-291C5 map 1...    44   1.9    1
(AC026962) Homo sapiens chromosome 3 clone RP11-264B9 map 3,...    44   1.9    1
(AC026014) Homo sapiens clone RP11-10C2, WORKING DRAFT SEQUE...    44   1.9    1
(BX004982) Human DNA sequence *** SEQUENCING CANCELLED *** f...    44   1.9    1
(CC211028) CH261-126F14_RM1.1 CH261 Gallus gallus genomic cl...    44   1.9    1
(EV039916) BNSCS3CT_UP_043_E06_04MAY2007_040 Brassica napus ...    44   1.9    1
(EE527020) 37RDBRH_UP_065_G10_05DEC2005_068 Brassica rapa 37...    44   1.9    1
(EE504055) EX2PLCL3_UP_038_A07_02NOV2004_063 Brassica napus ...    44   1.9    1
(EE503982) EX2PLCL3_UP_036_H04_02NOV2004_018 Brassica napus ...    44   1.9    1
(EE410106) 55ACACPE_UP_006_A08_25AUG2004_064 Brassica napus ...    44   1.9    1
(CX280080) 16ACDHDS_UP_005_F04_13APR2004_022 Brassica napus ...    44   1.9    1
(CT792954) Paramecium tetraurelia 5-PRIME EST from clone LK0...    44   1.9    1
(BX780485) Xenopus tropicalis EST, clone TEgg074b24 3'.            44   1.9    1
(FG578832) BN24DYSC_UP_097_D04_11FEB2008_026 BN24DYSC Brassi...    44   1.9    1
(EV158225) 0082087 Brassica napus Bud library Brassica napus...    44   1.9    1
(AC214156) Macaca mulatta chromosome UNKNOWN clone CH250-69H...    42   2.2    4
(DD307082) NUCLEIC ACID AND POLYPEPTIDE SEQUENCES FROM LAWSO...    30   3.2    2
(AM180252) Lawsonia intracellularis PHE/MN1-00.                    30   3.2    2
(CR974458) Pig DNA sequence from clone CH242-29M17 on chromo...    34   3.2    3
(AC155035) Bos taurus clone CH240-34D12, WORKING DRAFT SEQUE...    32   3.6    2
(AC201017) Strongylocentrotus purpuratus clone R3-12H11, WOR...    34   3.8    2
(DD303922) NUCLEIC ACID AND POLYPEPTIDE SEQUENCES FROM LAWSO...    30   5.2    2
(AX344930) Sequence 1 from Patent WO0200928.                       36   6.9    3
(CR381666) Zebrafish DNA sequence from clone DKEY-224I13 in ...    42   7.5    1
(AC147643) Mus musculus BAC clone RP23-35L23 from chromosome...    42   7.5    1
(AC133518) Mus musculus BAC clone RP23-138G24 from chromosom...    42   7.5    1
(AC117319) Rattus norvegicus  BAC CH230-310G2 (Children's Ho...    42   7.5    1
(AC209573) MACACA MULATTA BAC clone CH250-375H24 from chromo...    42   7.5    1
(CR382138) Debaryomyces hansenii chromosome F of strain CBS7...    42   7.5    1
(AC097721) Homo sapiens BAC clone RP11-36O6 from 2, complete...    42   7.5    1
(AC025442) Homo sapiens chromosome 5 clone CTD-2019M3, compl...    42   7.5    1
(AC020741) Homo sapiens BAC clone RP11-798L4 from 4, complet...    42   7.5    1
(AC016603) Homo sapiens chromosome 5 clone CTD-2132G23, comp...    42   7.5    1
(AC010359) Homo sapiens chromosome 5 clone CTD-2033C11, comp...    42   7.5    1
(AC130230) Rattus norvegicus clone CH230-231N13, *** SEQUENC...    42   7.5    1
(AC127922) Rattus norvegicus clone CH230-129I15, *** SEQUENC...    42   7.5    1
(AC122069) Rattus norvegicus clone CH230-76G16, *** SEQUENCI...    42   7.5    1
(AC121023) Rattus norvegicus clone CH230-309O12, WORKING DRA...    42   7.5    1
(AC109073) Rattus norvegicus clone CH230-83K6, *** SEQUENCIN...    42   7.5    1
(AC098421) Rattus norvegicus clone CH230-2F2, *** SEQUENCING...    42   7.5    1
(AC219708) Bos taurus clone CH240-324P8, WORKING DRAFT SEQUE...    42   7.5    1
(AC209764) Macaca mulatta chromosome UNKNOWN clone CH250-79L...    42   7.5    1
(AC209749) Macaca mulatta chromosome UNKNOWN clone CH250-103...    42   7.5    1
(AC208191) Macaca mulatta chromosome UNKNOWN clone CH250-144...    42   7.5    1
(AC175248) Bos taurus clone CH240-460J2, WORKING DRAFT SEQUE...    42   7.5    1
(AC025510) Homo sapiens chromosome 4 clone RP11-673L23 map 4...    42   7.5    1
(AC008563) Homo sapiens chromosome 5 clone CTC-536A23, WORKI...    42   7.5    1
(BH148513) ENTQO58TR Entamoeba histolytica Sheared DNA Entam...    42   7.5    1
(BH136437) ENTNH16TF Entamoeba histolytica Sheared DNA Entam...    42   7.5    1
(BH131705) ENTOF42TR Entamoeba histolytica Sheared DNA Entam...    42   7.5    1
(ET041467) MUGQ_CH252P347P05T7_CP648_017 CHORI-252 Vervet Mo...    42   7.5    1
(ER926144) MUGQ_CH252P286B03Sp6_CP421_016 CHORI-252 Vervet M...    42   7.5    1
(EK140641) 1095454102388 Global-Ocean-Sampling_GS-31-01-01-1...    42   7.5    1
(AM622280) Entamoeba invadens IP1 GSS, clone inv092d04.p1k.        42   7.5    1
(AM604014) Entamoeba invadens IP1 GSS, clone inv030f05.p1k.        42   7.5    1
(DX007843) OG_ABa0111D17.f OG_ABa Oryza granulata genomic cl...    42   7.5    1
(CW442173) fsbb001f161l08f0 Sorghum methylation filtered lib...    42   7.5    1
(CE530497) tigr-gss-dog-17000365868548 Dog Library Canis lup...    42   7.5    1
(DC270160) Oryzias latipes cDNA clone:olrf19i10, 5' end.           42   7.5    1
(BX712425) Xenopus tropicalis EST, clone TTpA020l24 3'.            42   7.5    1
(BF700235) 602125648F1 NIH_MGC_56 Homo sapiens cDNA clone IM...    42   7.5    1
(CU466930) Candidatus Cloacamonas acidaminovorans provisiona...    42   7.5    1
(CP000487) Campylobacter fetus subsp. fetus 82-40, complete ...    42   7.5    1
(AP008210) Oryza sativa (japonica cultivar-group) genomic DN...    30   8.4    2

>(BJ334327) Dictyostelium discoideum cDNA clone:dda45o19, 5' end,
           single read.
          Length = 207

 Score =  240 bits (121), Expect(2) = e-100
 Identities = 121/121 (100%)
 Strand = Plus / Plus


Query: 1   tttagatgaaattaattcaattagttttttaggaaaaacattttatataaactgggattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tttagatgaaattaattcaattagttttttaggaaaaacattttatataaactgggattt 60


Query: 61  aaggagtgggaatatatgttcaaataaaggaataatttgtgattccacaaattcaacaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aaggagtgggaatatatgttcaaataaaggaataatttgtgattccacaaattcaacaac 120


Query: 121 c 121
           |
Sbjct: 121 c 121

 Score =  157 bits (79), Expect(2) = e-100
 Identities = 79/79 (100%)
 Strand = Plus / Plus


Query: 129 taataatagatgaaacactaccaaatggagagggtataccaccaaatgtaacattaccag 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 taataatagatgaaacactaccaaatggagagggtataccaccaaatgtaacattaccag 188


Query: 189 aaggagacattttatctct 207
           |||||||||||||||||||
Sbjct: 189 aaggagacattttatctct 207

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 267,804,512
Number of extensions: 16111303
Number of successful extensions: 4584966
Number of sequences better than 10.0: 87
Length of query: 216
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 193
Effective length of database: 93,106,754,628
Effective search space: 17969603643204
Effective search space used: 17969603643204
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7. 9
Homology vs Protein 
Query= Contig-U14070-1 (Contig-U14070-1Q) /CSM_Contig/Contig-U14070-1Q.Seq.d
         (216 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000492_1078(CP000492|pid:none) Chlorobium phaeobacteroides DSM...    33   4.1
BC129712_1(BC129712|pid:none) Xenopus laevis hypothetical protei...    32   5.4
(A1Y2K1) RecName: Full=Proto-oncogene tyrosine-protein kinase Fy...    32   7.1
AK156584_1(AK156584|pid:none) Mus musculus activated spleen cDNA...    32   7.1
(A0JNB0) RecName: Full=Proto-oncogene tyrosine-protein kinase Fy...    32   7.1
(P39688) RecName: Full=Proto-oncogene tyrosine-protein kinase Fy...    32   7.1
S74774_1(S74774|pid:none) p59fyn(T)=OKT3-induced calcium influx ...    32   7.1
AJ320183_1(AJ320183|pid:none) Hylobates sp. mRNA for fyn protein...    32   7.1
BC108793_1(BC108793|pid:none) Xenopus laevis FYN oncogene relate...    32   7.1
M14676_1(M14676|pid:none) Human src-like kinase (slk) mRNA, comp...    32   7.1
FJ195639_1(FJ195639|pid:none) Sus scrofa FYN oncogene transcript...    32   7.1
CP001581_3217(CP001581|pid:none) Clostridium botulinum A2 str. K...    32   7.1
BC032149_1(BC032149|pid:none) Mus musculus Fyn proto-oncogene, m...    32   7.1
DQ836056_1(DQ836056|pid:none) Sus scrofa FYN oncogene transcript...    32   7.1
(Q62844) RecName: Full=Proto-oncogene tyrosine-protein kinase Fy...    32   7.1
CP000939_3021(CP000939|pid:none) Clostridium botulinum B1 str. O...    32   7.1
Z97989_4(Z97989|pid:none) Human DNA sequence from clone RP1-66H1...    32   7.1
S33568(S33568;S36351;S20807)protein-tyrosine kinase (EC 2.7.1.11...    32   7.1
AM412317_3023(AM412317|pid:none) Clostridium botulinum A str. AT...    32   9.2
CP000728_2922(CP000728|pid:none) Clostridium botulinum F str. La...    32   9.2

>CP000492_1078(CP000492|pid:none) Chlorobium phaeobacteroides DSM
           266, complete genome.
          Length = 649

 Score = 32.7 bits (73), Expect = 4.1
 Identities = 18/50 (36%), Positives = 29/50 (58%)
 Frame = +2

Query: 17  SISFLGKTFYINWDLRSGNICSNKGIICDSTNSTTKKIIIDETLPNGEGI 166
           ++++ G+T   NW+  SG+I   KG    +  S +KK ++DE   NG GI
Sbjct: 566 NLAYTGETRVQNWEDWSGDIVV-KGGYAVANISVSKKFLVDEDKKNGRGI 614

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 295,529,368
Number of extensions: 5744480
Number of successful extensions: 13384
Number of sequences better than 10.0: 20
Number of HSP's gapped: 13383
Number of HSP's successfully gapped: 20
Length of query: 72
Length of database: 1,051,180,864
Length adjustment: 43
Effective length of query: 29
Effective length of database: 912,008,827
Effective search space: 26448255983
Effective search space used: 26448255983
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 27 (15.0 bits)
PSORT 

 psg: 0.75  gvh: 0.30  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: vacuolar
	  4.0 %: mitochondrial

>> prediction for Contig-U14070-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0