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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U14063-1
Contig ID Contig-U14063-1
Contig update 2002.12.18
Contig sequence 
>Contig-U14063-1 (Contig-U14063-1Q) /CSM_Contig/Contig-U14063-1Q.Seq.d
TCATCATTACCAGCAGCATCATTATCCTCTGGTTCATTGAGTGCTGGTAT
TGGGTTTTCAAAAAGAGTTAAAGATGAAGATGTTGTCGATATTAGTGATG
GTAATAAAAAATTAACCGTTCCAGTAAGAAGAGGTGTTACTGTTAAATTA
TCATCTAATCAATTCCCATTAAATATTGATAAATCAGTTAAAATTTATTT
ATATTGTGTTATTTTTACTCCACAAATTTATAATAGAGTTAGAAAATATG
ATTTAGTATCAGGATTACAAGGTGCAATTGGACCAAATATTTATGATGGA
ACATCATCATTGTATTGTTTAAAAGAGATGACAGAGGATCAAATATTTCA
ATTTGATAGTGTAAATATTAGATTGAGTTTTATTAAGGTATTGGATCCAC
CATCTACCATTCAATTTTATAATGTTTTCATGAAGAAGATTATGAAGTTA
TTAGGATTTTCAATTGTTGGTAGACAATATTTTAATTCACGTCTATCAGA
AAAGATTGAAAGTAGTAATTTAAATGTTTGGCCAGGTTTCTTTACATCGA
TTGGTAAGNNNNNNNNN
Gap no gap
Contig length 567
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 5160579
End point 5161136
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U14063
List of clone(s) 

est1=AHG457F,1,558
Translated Amino Acid sequence 
SSLPAASLSSGSLSAGIGFSKRVKDEDVVDISDGNKKLTVPVRRGVTVKLSSNQFPLNID
KSVKIYLYCVIFTPQIYNRVRKYDLVSGLQGAIGPNIYDGTSSLYCLKEMTEDQIFQFDS
VNIRLSFIKVLDPPSTIQFYNVFMKKIMKLLGFSIVGRQYFNSRLSEKIESSNLNVWPGF
FTSIGKXXX
Translated Amino Acid sequence (All Frames) 
Frame A:
SSLPAASLSSGSLSAGIGFSKRVKDEDVVDISDGNKKLTVPVRRGVTVKLSSNQFPLNID
KSVKIYLYCVIFTPQIYNRVRKYDLVSGLQGAIGPNIYDGTSSLYCLKEMTEDQIFQFDS
VNIRLSFIKVLDPPSTIQFYNVFMKKIMKLLGFSIVGRQYFNSRLSEKIESSNLNVWPGF
FTSIGKXXX


Frame B:
hhyqqhhyplvh*vlvlgfqkelkmkmlsilvmvikn*pfq*eevlllnyhlinsh*ili
nqlkfiyivlfllhkfiielenmi*yqdykvqldqifmmehhhciv*kr*qrikyfnliv
*ild*vllrywihhlpfnfimfs*rrl*sy*dfqllvdnilihvyqkrlkvvi*mfgqvs
lhrlvxxx


Frame C:
iitssiiilwfiecwywvfkks*r*rccry**w**kinrsskkrcyc*iii*sipiky**
is*nlfilcyfystnl**s*ki*fsiritrcnwtkyl*wniiivlfkrddrgsnisi**c
ky*iefy*gigstiyhsil*cfheedyevirifncw*tif*ftsirkd*k**fkclarfl
yidw*xxx
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U14063-1 (Contig-U14063-1Q)
/CSM_Contig/Contig-U14063-1Q.Seq.d
         (567 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U14063-1 (Contig-U14063-1Q) /CSM_Contig/Conti...  1106  0.0
Contig-U13917-1 (Contig-U13917-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U13758-1 (Contig-U13758-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U12805-1 (Contig-U12805-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U10129-1 (Contig-U10129-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U05351-1 (Contig-U05351-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U03009-1 (Contig-U03009-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U14868-1 (Contig-U14868-1Q) /CSM_Contig/Conti...    34  0.16
Contig-U14858-1 (Contig-U14858-1Q) /CSM_Contig/Conti...    34  0.16
Contig-U13845-1 (Contig-U13845-1Q) /CSM_Contig/Conti...    34  0.16

>Contig-U14063-1 (Contig-U14063-1Q) /CSM_Contig/Contig-U14063-1Q.Seq.d
          Length = 567

 Score = 1106 bits (558), Expect = 0.0
 Identities = 558/558 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatcattaccagcagcatcattatcctctggttcattgagtgctggtattgggttttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tcatcattaccagcagcatcattatcctctggttcattgagtgctggtattgggttttca 60

                                                                       
Query: 61  aaaagagttaaagatgaagatgttgtcgatattagtgatggtaataaaaaattaaccgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aaaagagttaaagatgaagatgttgtcgatattagtgatggtaataaaaaattaaccgtt 120

                                                                       
Query: 121 ccagtaagaagaggtgttactgttaaattatcatctaatcaattcccattaaatattgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ccagtaagaagaggtgttactgttaaattatcatctaatcaattcccattaaatattgat 180

                                                                       
Query: 181 aaatcagttaaaatttatttatattgtgttatttttactccacaaatttataatagagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaatcagttaaaatttatttatattgtgttatttttactccacaaatttataatagagtt 240

                                                                       
Query: 241 agaaaatatgatttagtatcaggattacaaggtgcaattggaccaaatatttatgatgga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agaaaatatgatttagtatcaggattacaaggtgcaattggaccaaatatttatgatgga 300

                                                                       
Query: 301 acatcatcattgtattgtttaaaagagatgacagaggatcaaatatttcaatttgatagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 acatcatcattgtattgtttaaaagagatgacagaggatcaaatatttcaatttgatagt 360

                                                                       
Query: 361 gtaaatattagattgagttttattaaggtattggatccaccatctaccattcaattttat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gtaaatattagattgagttttattaaggtattggatccaccatctaccattcaattttat 420

                                                                       
Query: 421 aatgttttcatgaagaagattatgaagttattaggattttcaattgttggtagacaatat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aatgttttcatgaagaagattatgaagttattaggattttcaattgttggtagacaatat 480

                                                                       
Query: 481 tttaattcacgtctatcagaaaagattgaaagtagtaatttaaatgtttggccaggtttc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tttaattcacgtctatcagaaaagattgaaagtagtaatttaaatgtttggccaggtttc 540

                             
Query: 541 tttacatcgattggtaag 558
           ||||||||||||||||||
Sbjct: 541 tttacatcgattggtaag 558


>Contig-U13917-1 (Contig-U13917-1Q) /CSM_Contig/Contig-U13917-1Q.Seq.d
          Length = 1429

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 324 agagatgacagaggatcaaa 343
           ||||||||||||||||||||
Sbjct: 495 agagatgacagaggatcaaa 514


>Contig-U13758-1 (Contig-U13758-1Q) /CSM_Contig/Contig-U13758-1Q.Seq.d
          Length = 666

 Score = 36.2 bits (18), Expect = 0.040
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 69  taaagatgaagatgttgt 86
           ||||||||||||||||||
Sbjct: 186 taaagatgaagatgttgt 169


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,798
Number of Sequences: 6905
Number of extensions: 10798
Number of successful extensions: 1176
Number of sequences better than 10.0: 382
length of query: 567
length of database: 5,674,871
effective HSP length: 16
effective length of query: 551
effective length of database: 5,564,391
effective search space: 3065979441
effective search space used: 3065979441
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.12.17
Homology vs DNA 
Query= Contig-U14063-1 (Contig-U14063-1Q) /CSM_Contig/Contig-U14063-1Q.Seq.d
         (567 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ333652) Dictyostelium discoideum cDNA clone:dda43b16, 5' ...  1104   0.0    1
(AC115682) Dictyostelium discoideum chromosome 2 map 4101105...    68   4e-14  5
(AX344552) Sequence 3 from Patent WO0200932.                       36   0.025  11
(FF314558) 279396391 Pea aphid whole body normalized full le...    50   0.087  1
(EX636530) 256608780 Pea aphid whole body normalized full le...    50   0.087  1
(EX626979) 255441854 Pea aphid whole body normalized full le...    50   0.087  1
(EX626110) 255438111 Pea aphid whole body normalized full le...    50   0.087  1
(EE814593) 010914ONDC209048HT ONDC Ovis aries cDNA, mRNA seq...    46   0.13   2
(AE014851) Plasmodium falciparum 3D7 chromosome 12, section ...    32   0.14   11
(EE813976) 010914ONDC209059HT ONDC Ovis aries cDNA, mRNA seq...    46   0.15   2
(EE758996) 020829OD10L013023HT OD10L Ovis aries cDNA, mRNA s...    46   0.17   2
(AC230174) Bos taurus clone CH240-518P21, WORKING DRAFT SEQU...    38   0.19   2
(AC230176) Bos taurus clone CH240-519A19, WORKING DRAFT SEQU...    38   0.19   2
(AW201641) sf05f01.y1 Gm-c1027 Glycine max cDNA clone GENOME...    36   0.26   2
(AM452377) Vitis vinifera contig VV78X261484.10, whole genom...    34   0.32   5
(CR522881) Zebrafish DNA sequence from clone DKEY-22P6 in li...    48   0.34   1
(AC011920) Homo sapiens clone 14_N_11, LOW-PASS SEQUENCE SAM...    48   0.34   1
(CU466425) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   0.49   3
(CB414953) ScaE_3975 Bay scallop Uni-ZAP XR Expression Libra...    40   0.55   2
(BX248583) Blochmannia floridanus complete genome.                 32   0.56   12
(EL501207) 063_PFLAB1-M-P24B.AB1 Blood stage Plasmodium falc...    36   0.72   3
(ED672471) GM_WBb0001K01.r GM_WBb Glycine max genomic clone ...    44   0.72   2
(AC223951) Bos taurus clone CH240-454B9, WORKING DRAFT SEQUE...    46   0.73   6
(AZ546115) ENTGI42TR Entamoeba histolytica Sheared DNA Entam...    34   0.95   2
(CP000552) Prochlorococcus marinus str. MIT 9515, complete g...    32   1.3    17
(AC096561) Homo sapiens BAC clone RP11-257D7 from 2, complet...    36   1.3    6
(AM433625) Vitis vinifera contig VV78X134482.6, whole genome...    46   1.4    1
(AC024341) Homo sapiens chromosome 11, clone RP11-336F14, co...    46   1.4    1
(AC013799) Homo sapiens, clone RP11-20J1, complete sequence.       46   1.4    1
(AC147458) Felis catus clone RP86-99M14, WORKING DRAFT SEQUE...    46   1.4    1
(AC178064) Strongylocentrotus purpuratus clone R3-1117E11, W...    46   1.4    1
(AC018863) Homo sapiens chromosome 2 clone RP11-20J1, WORKIN...    46   1.4    1
(DU494570) 1098415828110 CHORI-243 Ovis aries genomic clone ...    46   1.4    1
(CV672639) RET7SJ_04F06.T7 Schistosoma japonicum reverse cDN...    46   1.4    1
(DQ832717) Phytophthora sojae mitochondrion, complete genome.      34   1.6    4
(AC186295) Medicago truncatula chromosome 2 BAC clone mth2-2...    42   1.6    4
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    32   1.7    14
(AC191694) Pan troglodytes BAC clone CH251-669I10 from chrom...    36   1.8    4
(CU234199) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   1.9    5
(BY890580) Cryptomeria japonica cDNA clone: CMFL035_N18, 5'e...    42   1.9    2
(CS468878) Sequence 69 from Patent EP1748080.                      34   1.9    9
(CS468877) Sequence 68 from Patent EP1748080.                      34   1.9    9
(CS419355) Sequence 69 from Patent WO2006094836.                   34   1.9    9
(CS419354) Sequence 68 from Patent WO2006094836.                   34   1.9    9
(CU463076) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   2.0    7
(CW124046) 104_503_11111556_116_34698_038 Sorghum methylatio...    42   2.0    2
(ED496956) qt36c03.b1 Sub-library of four pooled sorghum BAC...    42   2.1    2
(CW185118) 104_602_11165892_116_36696_038 Sorghum methylatio...    42   2.3    2
(ED496801) ix16f09.g1 Sub-library of four pooled sorghum BAC...    42   2.4    2
(AE014827) Plasmodium falciparum 3D7 chromosome 14 section 1...    36   2.7    7
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    32   2.7    7
(DU951611) 215828 Tomato MboI BAC Library Solanum lycopersic...    36   2.7    2
(AC177075) Strongylocentrotus purpuratus clone R3-4004K3, WO...    36   2.8    4
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    32   3.1    8
(AC206314) Zea mays chromosome 6 clone CH201-117I14; ZMMBBc0...    40   3.4    3
(BH132539) ENTNY83TF Entamoeba histolytica Sheared DNA Entam...    32   3.5    2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    30   3.8    12
(AL357510) Human DNA sequence from clone RP11-195F21 on chro...    40   4.6    2
(EJ240917) 1095328050467 Global-Ocean-Sampling_GS-27-01-01-1...    28   4.6    4
(AC175756) Bos taurus clone CH240-396O8, WORKING DRAFT SEQUE...    38   4.7    6
(DQ241797) Tamolanica tamolana mitochondrion, complete genome.     34   4.8    5
(DJ025881) Genome-wide DNA marker of Saccharomyces cerevisiae.     32   5.0    13
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    34   5.0    6
(CR855205) Oryza sativa genomic DNA, chromosome 4, BAC clone...    44   5.4    1
(AP008210) Oryza sativa (japonica cultivar-group) genomic DN...    44   5.4    1
(AM483863) Vitis vinifera contig VV78X135074.4, whole genome...    44   5.4    1
(AM435169) Vitis vinifera contig VV78X273904.3, whole genome...    44   5.4    1
(AL606998) Oryza sativa genomic DNA, chromosome 4, BAC clone...    44   5.4    1
(AL606623) Oryza sativa genomic DNA, chromosome 4, BAC clone...    44   5.4    1
(AL049760) Human DNA sequence from clone XX-PRYR7CC1 on chro...    44   5.4    1
(CU633371) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.4    1
(CU469488) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.4    1
(CU137671) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.4    1
(AC211153) Zea mays chromosome 1 clone CH201-237M16; ZMMBBc0...    44   5.4    1
(AC189146) Cavia porcellus clone CH234-363O17, WORKING DRAFT...    44   5.4    1
(AC176934) Strongylocentrotus purpuratus clone R3-1104E6, WO...    44   5.4    1
(AC170863) Mus musculus chromosome 13 clone RP24-572C22, WOR...    44   5.4    1
(EJ639412) 1093010479216 Global-Ocean-Sampling_GS-29-01-01-1...    44   5.4    1
(ED687013) GM_WBb0022H06.r GM_WBb Glycine max genomic clone ...    44   5.4    1
(ED537098) KBrB130D09F KBrB, Brassica rapa BamHI BAC library...    44   5.4    1
(ED532102) KBrB123I03R KBrB, Brassica rapa BamHI BAC library...    44   5.4    1
(ED525609) KBrB114L13R KBrB, Brassica rapa BamHI BAC library...    44   5.4    1
(ED518693) KBrB104L13R KBrB, Brassica rapa BamHI BAC library...    44   5.4    1
(DX046073) KBrB047J13F KBrB, Brassica rapa BamHI BAC library...    44   5.4    1
(DX039540) KBrB039A10R KBrB, Brassica rapa BamHI BAC library...    44   5.4    1
(DX031087) KBrB027M19F KBrB, Brassica rapa BamHI BAC library...    44   5.4    1
(DX013010) KBrB004B09F KBrB, Brassica rapa BamHI BAC library...    44   5.4    1
(DU866825) 83969 Tomato HindIII BAC Library Solanum lycopers...    44   5.4    1
(CZ502585) GMW2-22H6a.g1 GMW2 Glycine max genomic, genomic s...    44   5.4    1
(CL144499) ISB1-144I17_T7.1 ISB1 Xenopus (Silurana) tropical...    44   5.4    1
(BZ115853) CH230-410P1.TV CHORI-230 Segment 2 Rattus norvegi...    44   5.4    1
(AV030076) Mus musculus adult male cerebellum cDNA, partial ...    44   5.4    1
(CV086216) Mdfrt3081c21.y1 Mdfrt Malus x domestica cDNA clon...    44   5.4    1
(CO805437) Pcl11-006-B04-A-029.b Subtracted cDNA library fro...    44   5.4    1
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255...    44   5.4    1
(CU467502) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   5.5    5
(CT963111) Medicago truncatula chromosome 5 clone mth2-43h1,...    36   6.0    4
(AM444541) Vitis vinifera contig VV78X160268.9, whole genome...    42   6.5    5
(AC216673) Populus trichocarpa clone POP019-C15, complete se...    38   6.6    4
(DX917092) gSpZap-863.gT3 Spironucleus Zap GSS Library Spiro...    34   6.7    2

>(BJ333652) Dictyostelium discoideum cDNA clone:dda43b16, 5' end,
           single read.
          Length = 558

 Score = 1104 bits (557), Expect = 0.0
 Identities = 557/557 (100%)
 Strand = Plus / Plus


Query: 1   tcatcattaccagcagcatcattatcctctggttcattgagtgctggtattgggttttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tcatcattaccagcagcatcattatcctctggttcattgagtgctggtattgggttttca 60


Query: 61  aaaagagttaaagatgaagatgttgtcgatattagtgatggtaataaaaaattaaccgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aaaagagttaaagatgaagatgttgtcgatattagtgatggtaataaaaaattaaccgtt 120


Query: 121 ccagtaagaagaggtgttactgttaaattatcatctaatcaattcccattaaatattgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ccagtaagaagaggtgttactgttaaattatcatctaatcaattcccattaaatattgat 180


Query: 181 aaatcagttaaaatttatttatattgtgttatttttactccacaaatttataatagagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaatcagttaaaatttatttatattgtgttatttttactccacaaatttataatagagtt 240


Query: 241 agaaaatatgatttagtatcaggattacaaggtgcaattggaccaaatatttatgatgga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agaaaatatgatttagtatcaggattacaaggtgcaattggaccaaatatttatgatgga 300


Query: 301 acatcatcattgtattgtttaaaagagatgacagaggatcaaatatttcaatttgatagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 acatcatcattgtattgtttaaaagagatgacagaggatcaaatatttcaatttgatagt 360


Query: 361 gtaaatattagattgagttttattaaggtattggatccaccatctaccattcaattttat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gtaaatattagattgagttttattaaggtattggatccaccatctaccattcaattttat 420


Query: 421 aatgttttcatgaagaagattatgaagttattaggattttcaattgttggtagacaatat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aatgttttcatgaagaagattatgaagttattaggattttcaattgttggtagacaatat 480


Query: 481 tttaattcacgtctatcagaaaagattgaaagtagtaatttaaatgtttggccaggtttc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tttaattcacgtctatcagaaaagattgaaagtagtaatttaaatgtttggccaggtttc 540


Query: 541 tttacatcgattggtaa 557
           |||||||||||||||||
Sbjct: 541 tttacatcgattggtaa 557

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 794,049,280
Number of extensions: 49132910
Number of successful extensions: 4242747
Number of sequences better than 10.0: 119
Length of query: 567
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 544
Effective length of database: 93,106,754,628
Effective search space: 50650074517632
Effective search space used: 50650074517632
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 9
Homology vs Protein 
Query= Contig-U14063-1 (Contig-U14063-1Q) /CSM_Contig/Contig-U14063-1Q.Seq.d
         (567 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY014899_1(AY014899|pid:none) Strongylocentrotus purpuratus seaw...    73   5e-12
AY014900_1(AY014900|pid:none) Strongylocentrotus purpuratus clon...    73   5e-12
EU817487_1(EU817487|pid:none) Danio rerio piwi-like 2 mRNA, comp...    69   9e-11
(A2CEI6) RecName: Full=Piwi-like protein 2;                            69   9e-11
CR450719_1(CR450719|pid:none) Zebrafish DNA sequence from clone ...    69   9e-11
FJ168029_1(FJ168029|pid:none) Danio rerio Zili (zili) mRNA, comp...    69   9e-11
EF186090_1(EF186090|pid:none) Danio rerio piwil2 protein mRNA, c...    69   9e-11
AC116924_18(AC116924|pid:none) Dictyostelium discoideum chromoso...    67   3e-10
AF104260_1(AF104260|pid:none) Homo sapiens HIWI mRNA, complete c...    67   4e-10
AB274731_1(AB274731|pid:none) Homo sapiens mRNA for piwi-like 1,...    67   4e-10
BC028581_1(BC028581|pid:none) Homo sapiens piwi-like 1 (Drosophi...    67   4e-10
AF264004_1(AF264004|pid:none) Homo sapiens HIWI mRNA, complete c...    67   4e-10
(A6P7L8) RecName: Full=Piwi-like protein 2;  &AB331649_1(AB33164...    67   4e-10
EU413992_1(EU413992|pid:none) Oryzias latipes piwi-like protein ...    66   6e-10
(A6N7Y9) RecName: Full=Piwi-like protein 1;  &EF619343_1(EF61934...    65   1e-09
BC066846_1(BC066846|pid:none) Mus musculus piwi-like homolog 1 (...    65   1e-09
(Q9JMB7) RecName: Full=Piwi-like protein 1;  &AB032604_1(AB03260...    65   1e-09
BC129858_1(BC129858|pid:none) Mus musculus piwi-like homolog 1 (...    65   1e-09
AB455103_1(AB455103|pid:none) Botryllus primigenus BpPiwi mRNA f...    64   2e-09
EU413991_1(EU413991|pid:none) Oryzias latipes piwi-like protein ...    62   1e-08
(Q7Z3Z4) RecName: Full=Piwi-like protein 4;  &BC031060_1(BC03106...    61   2e-08
AK293616_1(AK293616|pid:none) Homo sapiens cDNA FLJ57260 complet...    61   2e-08
CR749642_1(CR749642|pid:none) Homo sapiens mRNA; cDNA DKFZp686P0...    61   2e-08
AB079366_1(AB079366|pid:none) Homo sapiens PIWIL1 mRNA, complete...    61   2e-08
AK299068_1(AK299068|pid:none) Homo sapiens cDNA FLJ58320 complet...    61   2e-08
(Q8TC59) RecName: Full=Piwi-like protein 2; AltName: Full=Cancer...    61   2e-08
AK030116_1(AK030116|pid:none) Mus musculus adult male testis cDN...    61   2e-08
EU334659_1(EU334659|pid:none) Strongylocentrotus purpuratus seal...    60   4e-08
(Q8CGT6) RecName: Full=Piwi-like protein 4;          Short=mAgo5...    58   2e-07
AB258534_1(AB258534|pid:none) Mus musculus piwiL4 mRNA for PiwiL...    58   2e-07
AY493987_1(AY493987|pid:none) Podocoryne carnea Cniwi (Cniwi) mR...    55   1e-06
AB372007_1(AB372007|pid:none) Bombyx mori BmAGO3 mRNA for AGO3, ...    55   2e-06
AE014134_2087(AE014134|pid:none) Drosophila melanogaster chromos...    54   3e-06
AF104354_1(AF104354|pid:none) Drosophila melanogaster PIWI (piwi...    54   4e-06
BT071791_1(BT071791|pid:none) Drosophila melanogaster FI04411 fu...    54   4e-06
(Q9VKM1) RecName: Full=Protein piwi;  &AE014134_2082(AE014134|pi...    54   4e-06
BT011097_1(BT011097|pid:none) Drosophila melanogaster RE21038 fu...    54   4e-06
BT011138_1(BT011138|pid:none) Drosophila melanogaster GM05853 fu...    54   4e-06
AB079368_1(AB079368|pid:none) Homo sapiens PIWIL3 mRNA, complete...    53   7e-06
AM942741_1(AM942741|pid:none) Isodiametra pulchra mRNA for piwi-...    50   3e-05
AB332313_1(AB332313|pid:none) Bombyx mori mRNA for siwi, complet...    49   9e-05
T20351(T20351) hypothetical protein D2030.6 - Caenorhabditis ele...    49   1e-04
EF434174_1(EF434174|pid:none) Drosophila melanogaster AGO3 mRNA,...    47   3e-04
BT053722_1(BT053722|pid:none) Drosophila melanogaster LD09959 fu...    47   3e-04
AY135692_1(AY135692|pid:none) Mus musculus Miwi 2 protein (Miwi2...    47   5e-04
AM942742_1(AM942742|pid:none) Isodiametra pulchra mRNA for piwi-...    45   0.001
EU586258_1(EU586258|pid:none) Schmidtea mediterranea piwi protei...    45   0.001
AY128524_1(AY128524|pid:none) Stylonychia lemnae macronuclear de...    45   0.001
AM942740_1(AM942740|pid:none) Macrostomum lignano mRNA for piwi-...    44   0.003
EU034629_1(EU034629|pid:none) Bombyx mori piwi-like protein (siw...    43   0.005
AK096837_1(AK096837|pid:none) Homo sapiens cDNA FLJ39518 fis, cl...    43   0.005
T30995(T30995) hypothetical protein C01G5.2 - Caenorhabditis ele...    37   0.49
AY647512_1(AY647512|pid:none) Primula parryi maturase K (matK) g...    35   1.4
CP001037_2880(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...    34   2.4
AP009049_3077(AP009049|pid:none) Clostridium kluyveri NBRC 12016...    34   2.4
AM296265_1(AM296265|pid:none) Saccharomyces kudriavzevii EST2 ge...    34   2.4
DQ378402_1(DQ378402|pid:none) Primula rotundifolia maturase K (m...    33   4.1
CP000923_1783(CP000923|pid:none) Thermoanaerobacter sp. X514, co...    33   4.1
DQ378401_1(DQ378401|pid:none) Primula littledalei maturase K (ma...    33   4.1
CP000924_916(CP000924|pid:none) Thermoanaerobacter pseudethanoli...    33   4.1
DQ378396_1(DQ378396|pid:none) Primula advena maturase K (matK) g...    33   5.4
CP000096_1944(CP000096|pid:none) Pelodictyon luteolum DSM 273, c...    33   5.4
DQ378392_1(DQ378392|pid:none) Primula stuartii maturase K (matK)...    33   5.4
DQ378393_1(DQ378393|pid:none) Primula soongii maturase K (matK) ...    33   5.4
DQ378398_1(DQ378398|pid:none) Primula maximowiczii maturase K (m...    33   5.4
AM296266_1(AM296266|pid:none) Saccharomyces kudriavzevii EST2 ge...    33   5.4
DQ378428_1(DQ378428|pid:none) Hottonia inflata maturase K (matK)...    33   7.0
CP000607_1618(CP000607|pid:none) Chlorobium phaeovibrioides DSM ...    33   7.0

>AY014899_1(AY014899|pid:none) Strongylocentrotus purpuratus seawi
           mRNA, complete cds.
          Length = 854

 Score = 73.2 bits (178), Expect = 5e-12
 Identities = 45/172 (26%), Positives = 83/172 (48%), Gaps = 8/172 (4%)
 Frame = +1

Query: 61  KRVKDEDVVDISDGNKKLTVPVRRGVTVKLSSNQFPLNIDKSVKIYLYCVIFTPQIYNRV 240
           +R +DE  ++ +   +        G  + L +N F L      ++Y Y V F P+I N
Sbjct: 80  RRRRDEIELEPTTRPENFVKQAIAGDKIALIANGFKLKTKPDWQLYQYRVDFEPEILNPR 139

Query: 241 RKYDLVSGLQGAIGPNIYDGTSSLYCLKEMTED------QIFQFDSVNIRLSFIKVLDP- 399
            ++ L+ G    +G  +     ++Y L ++ E       +     +VNI ++ +  L+P
Sbjct: 140 ARFALLKGHSALLGKGLTLDMDTMYSLFKLAEKVTNLSAERKDGSNVNICVTHVATLNPM 199

Query: 400 -PSTIQFYNVFMKKIMKLLGFSIVGRQYFNSRLSEKIESSNLNVWPGFFTSI 552
            P+T+  YNV  ++ +K++    VGR Y++   +  I+   L +WPGF TSI
Sbjct: 200 APNTLHLYNVLFRRCLKMINMEQVGRNYYDPTAAIDIKQHGLQLWPGFVTSI 251

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 844,246,391
Number of extensions: 16352036
Number of successful extensions: 32527
Number of sequences better than 10.0: 68
Number of HSP's gapped: 32495
Number of HSP's successfully gapped: 68
Length of query: 189
Length of database: 1,051,180,864
Length adjustment: 121
Effective length of query: 68
Effective length of database: 659,557,225
Effective search space: 44849891300
Effective search space used: 44849891300
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.90  gvh: 0.65  alm: 0.44  top: 0.33  tms: 0.00  mit: 0.30  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: extracellular, including cell wall
	 12.0 %: cytoplasmic
	 12.0 %: vacuolar
	 12.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: endoplasmic reticulum
	  4.0 %: Golgi

>> prediction for Contig-U14063-1 is exc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0