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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U14051-1
Contig ID Contig-U14051-1
Contig update 2002.12.18
Contig sequence 
>Contig-U14051-1 (Contig-U14051-1Q) /CSM_Contig/Contig-U14051-1Q.Seq.d
CAATACTGAGCAATAATCATTTAGCACCATTGAGACCTTCATTACCTCAA
AAACCATTACAACCATCAATACCTCAAAGATCAACATCATTACAGCCATC
ATTACCTCAAAAACCACAAAATAATTTAGTTCCATCACAGAATGCACAAC
AACATCAACAACAACAACAACGACCAATACCATCAATTTTAGCAAAACCA
CAACCATTACAACAACAACAACAATCATTTTTAAATCAAAACCAAAATAA
TAATAATAATTTACCAACACAATCAAATATTTTAGCAATTATGCAAACTC
AATTTAATATTAAAAAAGAATTATTATTTCAATTAATTACACCAGAGCAA
TTTTCATGTGCGGACCCACAAAATACAGTACTTAGAGATATCTTTAGTAG
TATACCAGATGCTTATTGTGATGGATATGATATTGGTAATTGGTGGATAT
TTAATGTTGAGCATCACGCATTATTAGTTTCAAAACTTAGAGCATTACGT
CAATCACAATTAAATATAATTTGTTTACCAAATCATATTGTAAATCAGTT
TTGTAATAAAAAAACAACAACTACTACAACTACAACCATAAATACTGCAA
CAACTAATACATCATTTAATAATAATAATAAAAATTTAAATAAAACTTTT
CANNNNNNNNN
Gap no gap
Contig length 661
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 4971923
End point 4971271
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U14051
List of clone(s) 

est1=AHF276F,1,652
Translated Amino Acid sequence 
ILSNNHLAPLRPSLPQKPLQPSIPQRSTSLQPSLPQKPQNNLVPSQNAQQHQQQQQRPIP
SILAKPQPLQQQQQSFLNQNQNNNNNLPTQSNILAIMQTQFNIKKELLFQLITPEQFSCA
DPQNTVLRDIFSSIPDAYCDGYDIGNWWIFNVEHHALLVSKLRALRQSQLNIICLPNHIV
NQFCNKKTTTTTTTTINTATTNTSFNNNNKNLNKTFXXX
Translated Amino Acid sequence (All Frames) 
Frame A:
qy*aiii*hh*dlhylknhynhqylkdqhhyshhylknhkii*fhhrmhnninnnnndqy
hqf*qnhnhynnnnnhf*iktkiiiiiyqhnqif*qlcklnlilkknyyfn*lhqsnfhv
rthkiqyleislvvyqmlivmdmilviggylmlsithy*fqnlehyvnhn*i*fvyqiil
*isfvikkqqllqlqp*ilqqlihhliiiiki*iklfxxx


Frame B:
nteq*sfstietfitsktittintskiniitaiitskttk*fssitectttsttttttnt
infsktttitttttiifkskpk****ftntikyfsnyansi*y*kriiisinytraifmc
gptkyst*ryl**ytrcll*wi*yw*lvdi*c*asriisfkt*sitsitikynlftksyc
ksvl**knnnyynynhkycnn*yii*****kfk*nfsxxx


Frame C:
ILSNNHLAPLRPSLPQKPLQPSIPQRSTSLQPSLPQKPQNNLVPSQNAQQHQQQQQRPIP
SILAKPQPLQQQQQSFLNQNQNNNNNLPTQSNILAIMQTQFNIKKELLFQLITPEQFSCA
DPQNTVLRDIFSSIPDAYCDGYDIGNWWIFNVEHHALLVSKLRALRQSQLNIICLPNHIV
NQFCNKKTTTTTTTTINTATTNTSFNNNNKNLNKTFXXX
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U14051-1 (Contig-U14051-1Q)
/CSM_Contig/Contig-U14051-1Q.Seq.d
         (661 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U14051-1 (Contig-U14051-1Q) /CSM_Contig/Conti...   735  0.0
Contig-U12341-1 (Contig-U12341-1Q) /CSM_Contig/Conti...    52  8e-07
Contig-U11910-1 (Contig-U11910-1Q) /CSM_Contig/Conti...    48  1e-05
Contig-U01439-1 (Contig-U01439-1Q) /CSM_Contig/Conti...    48  1e-05
Contig-U09481-1 (Contig-U09481-1Q) /CSM_Contig/Conti...    46  5e-05
Contig-U12071-1 (Contig-U12071-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U12495-1 (Contig-U12495-1Q) /CSM_Contig/Conti...    42  7e-04
Contig-U11141-1 (Contig-U11141-1Q) /CSM_Contig/Conti...    42  7e-04
Contig-U10483-1 (Contig-U10483-1Q) /CSM_Contig/Conti...    42  7e-04
Contig-U14767-1 (Contig-U14767-1Q) /CSM_Contig/Conti...    40  0.003

>Contig-U14051-1 (Contig-U14051-1Q) /CSM_Contig/Contig-U14051-1Q.Seq.d
          Length = 661

 Score =  735 bits (371), Expect = 0.0
 Identities = 385/392 (98%)
 Strand = Plus / Plus

                                                                       
Query: 225 tcatttttaaatcaaaaccaaaataataataataatttaccaacacaatcaaatatttta 284
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 tcatttttaaatcaaaaccaaaataataataataatttaccaacacaatcaaatatttta 284

                                                                       
Query: 285 gcaattatgcaaactcaatttaatattaaaaaagaattattatttcaattaattacacca 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 gcaattatgcaaactcaatttaatattaaaaaagaattattatttcaattaattacacca 344

                                                                       
Query: 345 gagcaattttcatgtgcggacccacaaaatacagtacttagagatatctttagtagtata 404
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gagcaattttcatgtgcggacccacaaaatacagtacttagagatatctttagtagtata 404

                                                                       
Query: 405 ccagatgcttattgtgatggatatgatattggtaattggtggatatttaatgttgagcat 464
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ccagatgcttattgtgatggatatgatattggtaattggtggatatttaatgttgagcat 464

                                                                       
Query: 465 cacgcattattagtttcaaaacttagagcattacgtcaatcacaattaaatataatttgt 524
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 cacgcattattagtttcaaaacttagagcattacgtcaatcacaattaaatataatttgt 524

                                                                       
Query: 525 ttaccaaatcatattgtaaatcagttttgtaatnnnnnnncaacaactactacaactaca 584
           |||||||||||||||||||||||||||||||||       ||||||||||||||||||||
Sbjct: 525 ttaccaaatcatattgtaaatcagttttgtaataaaaaaacaacaactactacaactaca 584

                                           
Query: 585 accataaatactgcaacaactaatacatcatt 616
           ||||||||||||||||||||||||||||||||
Sbjct: 585 accataaatactgcaacaactaatacatcatt 616


 Score =  287 bits (145), Expect = 8e-78
 Identities = 145/145 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatactgagcaataatcatttagcaccattgagaccttcattacctcaaaaaccattac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   caatactgagcaataatcatttagcaccattgagaccttcattacctcaaaaaccattac 60

                                                                       
Query: 61  aaccatcaatacctcaaagatcaacatcattacagccatcattacctcaaaaaccacaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aaccatcaatacctcaaagatcaacatcattacagccatcattacctcaaaaaccacaaa 120

                                    
Query: 121 ataatttagttccatcacagaatgc 145
           |||||||||||||||||||||||||
Sbjct: 121 ataatttagttccatcacagaatgc 145


>Contig-U12341-1 (Contig-U12341-1Q) /CSM_Contig/Contig-U12341-1Q.Seq.d
          Length = 1670

 Score = 52.0 bits (26), Expect = 8e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                          
Query: 230  tttaaatcaaaaccaaaataataataataa 259
            |||||||||||| |||||||||||||||||
Sbjct: 1458 tttaaatcaaaatcaaaataataataataa 1487


 Score = 30.2 bits (15), Expect = 2.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 246 aataataataataat 260
           |||||||||||||||
Sbjct: 928 aataataataataat 942


 Score = 30.2 bits (15), Expect = 2.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 246 aataataataataat 260
           |||||||||||||||
Sbjct: 931 aataataataataat 945


>Contig-U11910-1 (Contig-U11910-1Q) /CSM_Contig/Contig-U11910-1Q.Seq.d
          Length = 763

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 234 aatcaaaaccaaaataataataataatt 261
           |||||||| |||||||||||||||||||
Sbjct: 538 aatcaaaatcaaaataataataataatt 565


 Score = 32.2 bits (16), Expect = 0.72
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 245 aaataataataataat 260
           ||||||||||||||||
Sbjct: 639 aaataataataataat 654


 Score = 30.2 bits (15), Expect = 2.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 246 aataataataataat 260
           |||||||||||||||
Sbjct: 643 aataataataataat 657


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 27,274
Number of Sequences: 6905
Number of extensions: 27274
Number of successful extensions: 11507
Number of sequences better than 10.0: 1751
length of query: 661
length of database: 5,674,871
effective HSP length: 16
effective length of query: 645
effective length of database: 5,564,391
effective search space: 3589032195
effective search space used: 3589032195
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.17
Homology vs DNA 
Query= Contig-U14051-1 (Contig-U14051-1Q) /CSM_Contig/Contig-U14051-1Q.Seq.d
         (661 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ333203) Dictyostelium discoideum cDNA clone:dda41g20, 5' ...   432   0.0    3
(CU467626) Zebrafish DNA sequence from clone CH1073-202A14 i...    34   0.067  2
(CT573440) Zebrafish DNA sequence from clone CH211-246E12 in...    38   0.23   2
(CR925728) Zebrafish DNA sequence from clone DKEY-96G2 in li...    36   0.23   2
(CU467853) Zebrafish DNA sequence from clone CH73-161I8 in l...    38   0.24   2
(AP003883) Oryza sativa Japonica Group genomic DNA, chromoso...    42   0.36   3
(AM262974) Ruminococcus flavefaciens ORF2, scaC gene, scaA g...    48   0.40   1
(BG407531) dab19d04.y1 NICHD_XGC_Sp1 Xenopus laevis cDNA clo...    46   1.6    1
(BF486669) AT21143.5prime AT Drosophila melanogaster adult t...    46   1.6    1
(AX770910) Sequence 41 from Patent WO02094867.                     44   1.8    3
(CU075490) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   3.1    2
(BX004821) Zebrafish DNA sequence from clone CH211-171A11 in...    34   3.1    2
(BX571871) Photorhabdus luminescens subsp. laumondii TTO1 co...    44   4.3    2
(CT027574) Zebrafish DNA sequence from clone DKEY-93K8 in li...    44   6.3    1
(CR759879) Zebrafish DNA sequence from clone DKEYP-117B8 in ...    44   6.3    1
(BV052941) S212P6870FF6.T0 CZECHII/Ei Mus musculus STS genom...    44   6.3    1
(AL606985) Mouse DNA sequence from clone RP23-153M14 on chro...    44   6.3    1
(AC163437) Mus musculus chromosome 5, clone RP23-119I18, com...    44   6.3    1
(AC159193) Mus musculus BAC clone RP24-68E20 from chromosome...    44   6.3    1
(AC142227) Mus musculus BAC clone RP24-115G21 from chromosom...    44   6.3    1
(AC139317) Mus musculus BAC clone RP24-495N6 from 15, comple...    44   6.3    1
(AC134548) Mus musculus BAC clone RP24-258K6 from chromosome...    44   6.3    1
(DJ086819) COMPUTATIONAL METHOD FOR IDETIFYING ADHESIN.            44   6.3    1
(DJ086530) Use of S1P.                                             44   6.3    1
(DJ056283) Use of S1P.                                             44   6.3    1
(DI141237) Use of S1P.                                             44   6.3    1
(DI126302) Use of PAM.                                             44   6.3    1
(DD195168) High Resolution Typing System For Pathogenic E Coli.    44   6.3    1
(DD195167) High Resolution Typing System For Pathogenic E Coli.    44   6.3    1
(DD195166) High Resolution Typing System For Pathogenic E Coli.    44   6.3    1
(DD195165) High Resolution Typing System For Pathogenic E Coli.    44   6.3    1
(DD195010) High Resolution Typing System For Pathogenic E Coli.    44   6.3    1
(DD195009) High Resolution Typing System For Pathogenic E Coli.    44   6.3    1
(DD195008) High Resolution Typing System For Pathogenic E Coli.    44   6.3    1
(DD195007) High Resolution Typing System For Pathogenic E Coli.    44   6.3    1
(CS148081) Sequence 404 from Patent WO2005076010.                  44   6.3    1
(CQ970012) Sequence 3 from Patent WO2004105773.                    44   6.3    1
(CQ969957) Sequence 3 from Patent WO2004105785.                    44   6.3    1
(CQ955720) Sequence 3 from Patent EP1481680.                       44   6.3    1
(CQ955690) Sequence 3 from Patent EP1481685.                       44   6.3    1
(BD184775) Nucleic acid molecule and polypeptide specific to...    44   6.3    1
(AR637713) Sequence 261 from patent US 6855814.                    44   6.3    1
(AR637659) Sequence 206 from patent US 6855814.                    44   6.3    1
(AR204364) Sequence 261 from patent US 6365723.                    44   6.3    1
(AR204310) Sequence 206 from patent US 6365723.                    44   6.3    1
(AY851478) Ciona intestinalis clone BAC XNE, complete sequence.    44   6.3    1
(AF362372) Dictyostelium discoideum histidine kinase DhkJ (d...    44   6.3    1
(AF067213) Caenorhabditis elegans cosmid T25B2, complete seq...    44   6.3    1
(AE014296) Drosophila melanogaster chromosome 3L, complete s...    44   6.3    1
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    44   6.3    1
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    44   6.3    1
(AC091218) Drosophila melanogaster 3L BAC RP98-3E24 (Roswell...    44   6.3    1
(AC010022) Drosophila melanogaster 3L BAC RP98-1E12 (Roswell...    44   6.3    1
(AL359257) Human DNA sequence from clone RP11-226E21 on chro...    44   6.3    1
(AC156713) Bos taurus clone CH240-55C17, WORKING DRAFT SEQUE...    44   6.3    1
(AC124340) Mus musculus clone RP23-67P11, LOW-PASS SEQUENCE ...    44   6.3    1
(AL731804) Mouse DNA sequence *** SEQUENCING IN PROGRESS ***...    44   6.3    1
(AL714009) Mouse DNA sequence *** SEQUENCING IN PROGRESS ***...    44   6.3    1
(AC218569) Bos taurus clone CH240-311G20, WORKING DRAFT SEQU...    44   6.3    1
(AC179220) Strongylocentrotus purpuratus clone R3-41E1, WORK...    44   6.3    1
(AC176003) Strongylocentrotus purpuratus clone R3-3028F18, W...    44   6.3    1
(AC172320) Strongylocentrotus purpuratus clone R3-14E22, WOR...    44   6.3    1
(AC168305) Medicago truncatula chromosome 4 clone mth2-48b24...    44   6.3    1
(AC013967) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    44   6.3    1
(AZ503464) 1M0343B18F Mouse 10kb plasmid UUGC1M library Mus ...    44   6.3    1
(FH902800) CHO_ONF011xf09f1.ab1 CHO_ONF Nicotiana tabacum ge...    44   6.3    1
(ER598121) 1093016230455 Global-Ocean-Sampling_GS-36-01-01-2...    44   6.3    1
(EK374606) 1095469432847 Global-Ocean-Sampling_GS-31-01-01-1...    44   6.3    1
(EK357425) 1095468669377 Global-Ocean-Sampling_GS-31-01-01-1...    44   6.3    1
(EK235906) 1095460199780 Global-Ocean-Sampling_GS-31-01-01-1...    44   6.3    1
(EK205976) 1095460074247 Global-Ocean-Sampling_GS-31-01-01-1...    44   6.3    1
(EK038269) 1092959486411 Global-Ocean-Sampling_GS-31-01-01-1...    44   6.3    1
(EJ232283) 1092404030340 Global-Ocean-Sampling_GS-27-01-01-1...    44   6.3    1
(EI000533) MUGQ_CH252P170F07Sp6_CN219_028 CHORI-252 Vervet M...    44   6.3    1
(DX520977) GH_MBb0086J18f GH_MBb Gossypium hirsutum genomic ...    44   6.3    1
(DU963150) 234071 Tomato MboI BAC Library Solanum lycopersic...    44   6.3    1
(DU006629) 303690 Tomato MboI BAC Library Solanum lycopersic...    44   6.3    1
(DH480380) Monosiga ovata DNA, fosmid clone: MOF-033C06, gen...    44   6.3    1
(DH471948) Monosiga ovata DNA, fosmid clone: MOF-018G13, gen...    44   6.3    1
(DH467695) Monosiga ovata DNA, fosmid clone: MOF-010N03, gen...    44   6.3    1
(DH063656) Oryzias latipes Fosmid clone:GOLWFno121_c15, reve...    44   6.3    1
(CU101031) Equus caballus GSS, BAC clone CH241-205H7, T7 end...    44   6.3    1
(EL697186) CF_WO0_31c11_SP6 Copepod Whole Organism, Normaliz...    44   6.3    1
(EG623236) EMBRYOF095453K12 POSSUM_01-POSSUM-C-EMBRYO-2KB Tr...    44   6.3    1
(EC744997) PSE00005251 rw_mgpallid Polysphondylium pallidum ...    44   6.3    1
(EC004173) 7613673 CE04 Caenorhabditis elegans cDNA clone 27...    44   6.3    1
(DY542495) HPO-N-S01-0370-LF Hematopoietic cDNA library Pena...    44   6.3    1
(AU053797) Dictyostelium discoideum slug cDNA, clone SLJ704.       44   6.3    1
(CV798711) BU01001X1H01 Normalized and Subtracted bovine end...    44   6.3    1
(CO273611) EK111606.5prime Exelixis FlyTag CK01 pCDNA-SK+ Dr...    44   6.3    1
(C23728) Dictyostelium discoideum gamete cDNA, clone FC-AD03.      44   6.3    1
(C22778) Dictyostelium discoideum  gamete cDNA, clone FC-AJ18.     44   6.3    1
(BJ409011) Dictyostelium discoideum cDNA clone:dds47p17, 3' ...    44   6.3    1
(BJ386510) Dictyostelium discoideum cDNA clone:ddc58a17, 3' ...    44   6.3    1
(BJ384800) Dictyostelium discoideum cDNA clone:ddc50c23, 3' ...    44   6.3    1
(BJ383886) Dictyostelium discoideum cDNA clone:ddc47f18, 3' ...    44   6.3    1
(BJ380845) Dictyostelium discoideum cDNA clone:ddc39c18, 3' ...    44   6.3    1
(BJ380054) Dictyostelium discoideum cDNA clone:ddc36h24, 3' ...    44   6.3    1
(BJ379665) Dictyostelium discoideum cDNA clone:ddc35h16, 3' ...    44   6.3    1
(BJ378704) Dictyostelium discoideum cDNA clone:ddc32g13, 3' ...    44   6.3    1

>(BJ333203) Dictyostelium discoideum cDNA clone:dda41g20, 5' end,
           single read.
          Length = 652

 Score =  432 bits (218), Expect(3) = 0.0
 Identities = 218/218 (100%)
 Strand = Plus / Plus


Query: 340 caccagagcaattttcatgtgcggacccacaaaatacagtacttagagatatctttagta 399
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 caccagagcaattttcatgtgcggacccacaaaatacagtacttagagatatctttagta 399


Query: 400 gtataccagatgcttattgtgatggatatgatattggtaattggtggatatttaatgttg 459
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gtataccagatgcttattgtgatggatatgatattggtaattggtggatatttaatgttg 459


Query: 460 agcatcacgcattattagtttcaaaacttagagcattacgtcaatcacaattaaatataa 519
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 agcatcacgcattattagtttcaaaacttagagcattacgtcaatcacaattaaatataa 519


Query: 520 tttgtttaccaaatcatattgtaaatcagttttgtaat 557
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tttgtttaccaaatcatattgtaaatcagttttgtaat 557

 Score =  287 bits (145), Expect(3) = 0.0
 Identities = 145/145 (100%)
 Strand = Plus / Plus


Query: 1   caatactgagcaataatcatttagcaccattgagaccttcattacctcaaaaaccattac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   caatactgagcaataatcatttagcaccattgagaccttcattacctcaaaaaccattac 60


Query: 61  aaccatcaatacctcaaagatcaacatcattacagccatcattacctcaaaaaccacaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aaccatcaatacctcaaagatcaacatcattacagccatcattacctcaaaaaccacaaa 120


Query: 121 ataatttagttccatcacagaatgc 145
           |||||||||||||||||||||||||
Sbjct: 121 ataatttagttccatcacagaatgc 145

 Score =  103 bits (52), Expect(3) = 0.0
 Identities = 52/52 (100%)
 Strand = Plus / Plus


Query: 565 caacaactactacaactacaaccataaatactgcaacaactaatacatcatt 616
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caacaactactacaactacaaccataaatactgcaacaactaatacatcatt 616

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 445,813,854
Number of extensions: 26129274
Number of successful extensions: 1963054
Number of sequences better than 10.0: 139
Length of query: 661
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 638
Effective length of database: 93,106,754,628
Effective search space: 59402109452664
Effective search space used: 59402109452664
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 9
Homology vs Protein 
Query= Contig-U14051-1 (Contig-U14051-1Q) /CSM_Contig/Contig-U14051-1Q.Seq.d
         (661 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF396668_1(AF396668|pid:none) Oryzias latipes choriogenin H gene...    37   0.67
(Q0JI49) RecName: Full=CBL-interacting protein kinase 11;       ...    36   0.87
AM295250_2182(AM295250|pid:none) Staphylococcus carnosus subsp. ...    36   0.87
AY598615_1(AY598615|pid:none) Cyprinodon variegatus zona radiata...    35   1.5
AF396669_1(AF396669|pid:none) Oryzias latipes choriogenin Hminor...    35   1.5
AC116957_107(AC116957|pid:none) Dictyostelium discoideum chromos...    35   1.9
AM933172_1781(AM933172|pid:none) Salmonella enterica subsp. ente...    35   2.5
CP001127_1267(CP001127|pid:none) Salmonella enterica subsp. ente...    35   2.5
CP000880_1656(CP000880|pid:none) Salmonella enterica subsp. ariz...    35   2.5
CP001144_1921(CP001144|pid:none) Salmonella enterica subsp. ente...    35   2.5
AE006468_1222(AE006468|pid:none) Salmonella enterica subsp. ente...    35   2.5
AE014298_1471(AE014298|pid:none) Drosophila melanogaster chromos...    35   2.6
AF500195_1(AF500195|pid:none) Oryzias latipes choriogenin H gene...    34   3.3
DQ976967_1(DQ976967|pid:none) Saguinus labiatus MEF2D (MEF2D) ge...    34   4.3
CP000783_275(CP000783|pid:none) Enterobacter sakazakii ATCC BAA-...    34   4.3
AE016830_142(AE016830|pid:none) Enterococcus faecalis V583, comp...    33   5.7
(O43184) RecName: Full=Disintegrin and metalloproteinase domain-...    33   7.4
CP000858_42(CP000858|pid:none) Salmonella enterica subsp. enteri...    33   7.4
CP000409_364(CP000409|pid:none) Rickettsia canadensis str. McKie...    33   7.4
CP001065_1(CP001065|pid:none) Escherichia coli 53638 plasmid p53...    33   7.4
(Q9P7E8) RecName: Full=Protein app1;  &AL162631_2(AL162631|pid:n...    33   7.4
AE006471_96(AE006471|pid:none) Salmonella typhimurium LT2 strain...    33   7.4
AB384856_1(AB384856|pid:none) Synthetic construct DNA, clone: pF...    33   7.4
AF023476_1(AF023476|pid:none) Homo sapiens meltrin-L precursor (...    33   7.4
AF172604_1(AF172604|pid:none) Plasmodium vinckei circumsporozoit...    33   7.4
K01693_1(K01693|pid:none) C.pallidivittatus Balbiani ring (BR1),...    33   7.4
CP000548_1550(CP000548|pid:none) Burkholderia mallei NCTC 10247 ...    33   9.6
CP000010_645(CP000010|pid:none) Burkholderia mallei ATCC 23344 c...    33   9.6
CP001159_2(CP001159|pid:none) Thalassiosira pseudonana CCMP1335 ...    33   9.6
AM270320_98(AM270320|pid:none) Aspergillus niger contig An14c013...    33   9.6
CP000526_2229(CP000526|pid:none) Burkholderia mallei SAVP1 chrom...    33   9.6

>AF396668_1(AF396668|pid:none) Oryzias latipes choriogenin H gene,
           partial cds.
          Length = 670

 Score = 36.6 bits (83), Expect = 0.67
 Identities = 19/36 (52%), Positives = 20/36 (55%)
 Frame = +3

Query: 27  PLRPSLPQKPLQPSIPQRSTSLQPSLPQKPQNNLVP 134
           P  PS PQ P QP +PQ      PS PQ PQN  VP
Sbjct: 149 PQYPSKPQPPQQPQVPQ-----YPSKPQPPQNPQVP 179

 Score = 34.3 bits (77), Expect = 3.3
 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 27  PLRPSLPQKPLQPSIPQRSTSLQ-PSLPQKPQNNLVP 134
           P +P +PQ P +P  PQ     Q PS PQ PQN  VP
Sbjct: 158 PQQPQVPQYPSKPQPPQNPQVPQYPSKPQPPQNPQVP 194

 Score = 33.9 bits (76), Expect = 4.3
 Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 27  PLRPSLPQKPLQPSIPQRSTSLQ-PSLPQKPQNNLVP 134
           P  P +PQ P +P  PQ     Q PS PQ PQN  VP
Sbjct: 173 PQNPQVPQYPSKPQPPQNPQVPQYPSKPQPPQNPQVP 209

 Score = 33.9 bits (76), Expect = 4.3
 Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 27  PLRPSLPQKPLQPSIPQRSTSLQ-PSLPQKPQNNLVP 134
           P  P +PQ P +P  PQ     Q PS PQ PQN  VP
Sbjct: 188 PQNPQVPQYPSKPQPPQNPQVPQYPSKPQPPQNPQVP 224

 Score = 33.9 bits (76), Expect = 4.3
 Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 27  PLRPSLPQKPLQPSIPQRSTSLQ-PSLPQKPQNNLVP 134
           P  P +PQ P +P  PQ     Q PS PQ PQN  VP
Sbjct: 203 PQNPQVPQYPSKPQPPQNPQVPQYPSKPQPPQNPQVP 239

 Score = 33.9 bits (76), Expect = 4.3
 Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 27  PLRPSLPQKPLQPSIPQRSTSLQ-PSLPQKPQNNLVP 134
           P  P +PQ P +P  PQ     Q PS PQ PQN  VP
Sbjct: 218 PQNPQVPQYPSKPQPPQNPQVPQYPSKPQPPQNPQVP 254

 Score = 33.9 bits (76), Expect = 4.3
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 27  PLRPSLPQKPLQPSIPQRSTSLQ-PSLPQKPQNNLVPS 137
           P  P +PQ P +P  PQ  +  Q P  PQ+PQN   PS
Sbjct: 248 PQNPQVPQYPSKPQNPQYPSKPQYPQAPQQPQNPQYPS 285

 Score = 33.1 bits (74), Expect = 7.4
 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 15  NHLAPLRPSLPQKPLQPSIPQRSTSLQ-PSLPQKPQN 122
           N   P  P +PQ P  PS PQ  +  Q PS PQ P N
Sbjct: 83  NPQVPQNPQVPQNPQYPSYPQNPSYPQNPSYPQYPSN 119

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 650,845,304
Number of extensions: 10303939
Number of successful extensions: 36939
Number of sequences better than 10.0: 31
Number of HSP's gapped: 35728
Number of HSP's successfully gapped: 56
Length of query: 220
Length of database: 1,051,180,864
Length adjustment: 124
Effective length of query: 96
Effective length of database: 649,847,548
Effective search space: 62385364608
Effective search space used: 62385364608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.68  gvh: 0.42  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.55  mip: 0.10
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 88.0 %: mitochondrial
	  8.0 %: cytoplasmic
	  4.0 %: nuclear

>> prediction for Contig-U14051-1 is mit
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0