Contig-U14031-1
Contig ID Contig-U14031-1
Contig update 2002.12.18
Contig sequence
>Contig-U14031-1 (Contig-U14031-1Q) /CSM_Contig/Contig-U14031-1Q.Seq.d
AAAAAAAAAAAAAATTGAAATCAAAGTAATAATAGTAACAAATAAAAAAT
TATATAATTTTAATTTTTCAACTATTACAACTTAAACGTTATAACAACAA
ACCAAAAACAAAAACAAAACAAAAAAAAAAAAAAAAAAAAACACATATAT
ACATAATAAAGATGACTTCAAAAGGTTCACAAGAAGAATACGACTATTTA
TATAAAATTGTACTCATTGGTGATAGTGGTGTTGGCAAATCAAATCTTTT
ATCCAGATTCACACGTAATGAATTCAGTTTAGAGACCAAATCAACCATTG
GTGTAGAATTTGCAACTAGAACTATTCAAACTGAAGGTAAAACTATTAAA
GCTCAAGTGTGGGATACTGCAGGTCAAGAAAGATATAGAGCAATTACATC
TGCTTATTATCGTGGTGCAGTTGGTGCATTACTTGTATATGATATTGCAA
AGCAAGCAACTTATAAGAGCGTTGAAAGATGGATTTTAGAATTAAGAGAA
AACGCTGATCGTAACATTGAAATTATGTTGGTTGGTAACAAGAGTGATTT
AAGACACTTACGTGAAGTTTCAACTGATGAAGCCAAAGAATTTTCAGAAA
AACATAAACTTACTTTTATTGAAACATCTGCACTTGATTCAAGCAATGTA
GAATTAGCCTTCCAAAATATTTATTTTAACTCAAATTTATCACATTATGA
GCCGTCCAAGCCATTCAACTGGTCCACAAACTACAATTGATTCAAACACC
GAAACCATTATATTACCAACCACCTCTGAACCACCAGCCGCCAAATCTGG
TTGTTGTTAAATAATATAGTAACATTTTTTTTTTTTTTAAAAAAAAAAAA
ATTTATAAAAAAAAAAAAAAACAAATAAAAAAAAAAATAAAAATAAAAAA
CTTTTTTAAA

Gap no gap
Contig length 910
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 4265788
End point 4264878
Strand (PLUS/MINUS) MINUS
Number of clones 4
Number of EST 6
Link to clone list U14031
List of clone(s)

est1=SSK725E,1,911
est2=VSJ115F,11,130
est3=VSJ115Z,11,115
est4=AHD588F,22,130
est5=SSF871F,28,601
est6=SSF871Z,693,902
Translated Amino Acid sequence
kkkklksk****QIKNYIILIFQLLQLKRYNNKPKTKTKQKKKKKKTHIYIIKMTSKGSQ
EEYDYLYKIVLIGDSGVGKSNLLSRFTRNEFSLETKSTIGVEFATRTIQTEGKTIKAQVW
DTAGQERYRAITSAYYRGAVGALLVYDIAKQATYKSVERWILELRENADRNIEIMLVGNK
SDLRHLREVSTDEAKEFSEKHKLTFIETSALDSSNVELAFQNIYFNSNLSHYEPSKPFNW
STNYN*fkhrnhyitnhl*ttsrqiwlllnnivtfffflkkkkfikkkknk*kkk*k*kt
fl


Translated Amino Acid sequence (All Frames)
Frame A:
kkkkn*nqsnnsnk*kii*f*ffnyynlnvittnqkqkqnkkkkkkkhiyt**r*lqkvh
kknttiyiklyslvivvlanqifypdshvmnsv*rpnqplv*nlqlelfklkvkllklkc
gilqvkkdieqlhlliivvqlvhylymilqskqliralkdgf*n*ektlivtlklcwlvt
rvi*dtyvkfqlmkpknfqkninllllkhlhliqam*n*pskifiltqiyhimsrpshst
gpqttidsntetiilpttseppaaksgcc*ii**hffff*kkknl*kkkktnkkknknkk
lf*


Frame B:
kkkkieikviivtnkklynfnfstitt*tl*qqtknknktkkkkkkntyihnkddfkrft
rrirlfi*ncthw**wcwqiksfiqiht**iqfrdqinhwcricn*nysn*r*ny*sssv
gycrsrki*snyicllswcswcitci*yckasnl*er*kmdfrikrkr*s*h*nyvgw*q
e*fktlt*sfn**sqrifrkt*tyfy*nict*fkqcrislpkylf*lkfitl*avqaiql
vhklqliqtpkplyyqpplnhqppnlvvvk*ysniffffkkkkiykkkkkqikkkikikn
ffk


Frame C:
kkkklksk****QIKNYIILIFQLLQLKRYNNKPKTKTKQKKKKKKTHIYIIKMTSKGSQ
EEYDYLYKIVLIGDSGVGKSNLLSRFTRNEFSLETKSTIGVEFATRTIQTEGKTIKAQVW
DTAGQERYRAITSAYYRGAVGALLVYDIAKQATYKSVERWILELRENADRNIEIMLVGNK
SDLRHLREVSTDEAKEFSEKHKLTFIETSALDSSNVELAFQNIYFNSNLSHYEPSKPFNW
STNYN*fkhrnhyitnhl*ttsrqiwlllnnivtfffflkkkkfikkkknk*kkk*k*kt
fl


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U14031-1 (Contig-U14031-1Q)
/CSM_Contig/Contig-U14031-1Q.Seq.d
(910 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U14031-1 (Contig-U14031-1Q) /CSM_Contig/Conti... 1354 0.0
Contig-U14029-1 (Contig-U14029-1Q) /CSM_Contig/Conti... 70 5e-12
Contig-U12243-1 (Contig-U12243-1Q) /CSM_Contig/Conti... 64 3e-10
Contig-U12705-1 (Contig-U12705-1Q) /CSM_Contig/Conti... 54 3e-07
Contig-U04314-1 (Contig-U04314-1Q) /CSM_Contig/Conti... 46 7e-05
Contig-U11723-1 (Contig-U11723-1Q) /CSM_Contig/Conti... 44 3e-04
Contig-U07963-1 (Contig-U07963-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U04591-1 (Contig-U04591-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U05407-1 (Contig-U05407-1Q) /CSM_Contig/Conti... 40 0.004
Contig-U13979-1 (Contig-U13979-1Q) /CSM_Contig/Conti... 38 0.016

>Contig-U14031-1 (Contig-U14031-1Q) /CSM_Contig/Contig-U14031-1Q.Seq.d
Length = 910

Score = 1354 bits (683), Expect = 0.0
Identities = 683/683 (100%)
Strand = Plus / Plus


Query: 142 cacatatatacataataaagatgacttcaaaaggttcacaagaagaatacgactatttat 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 cacatatatacataataaagatgacttcaaaaggttcacaagaagaatacgactatttat 201


Query: 202 ataaaattgtactcattggtgatagtggtgttggcaaatcaaatcttttatccagattca 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ataaaattgtactcattggtgatagtggtgttggcaaatcaaatcttttatccagattca 261


Query: 262 cacgtaatgaattcagtttagagaccaaatcaaccattggtgtagaatttgcaactagaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cacgtaatgaattcagtttagagaccaaatcaaccattggtgtagaatttgcaactagaa 321


Query: 322 ctattcaaactgaaggtaaaactattaaagctcaagtgtgggatactgcaggtcaagaaa 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ctattcaaactgaaggtaaaactattaaagctcaagtgtgggatactgcaggtcaagaaa 381


Query: 382 gatatagagcaattacatctgcttattatcgtggtgcagttggtgcattacttgtatatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gatatagagcaattacatctgcttattatcgtggtgcagttggtgcattacttgtatatg 441


Query: 442 atattgcaaagcaagcaacttataagagcgttgaaagatggattttagaattaagagaaa 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 atattgcaaagcaagcaacttataagagcgttgaaagatggattttagaattaagagaaa 501


Query: 502 acgctgatcgtaacattgaaattatgttggttggtaacaagagtgatttaagacacttac 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 acgctgatcgtaacattgaaattatgttggttggtaacaagagtgatttaagacacttac 561


Query: 562 gtgaagtttcaactgatgaagccaaagaattttcagaaaaacataaacttacttttattg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gtgaagtttcaactgatgaagccaaagaattttcagaaaaacataaacttacttttattg 621


Query: 622 aaacatctgcacttgattcaagcaatgtagaattagccttccaaaatatttattttaact 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aaacatctgcacttgattcaagcaatgtagaattagccttccaaaatatttattttaact 681


Query: 682 caaatttatcacattatgagccgtccaagccattcaactggtccacaaactacaattgat 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 caaatttatcacattatgagccgtccaagccattcaactggtccacaaactacaattgat 741


Query: 742 tcaaacaccgaaaccattatattaccaaccacctctgaaccaccagccgccaaatctggt 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tcaaacaccgaaaccattatattaccaaccacctctgaaccaccagccgccaaatctggt 801


Query: 802 tgttgttaaataatatagtaaca 824
|||||||||||||||||||||||
Sbjct: 802 tgttgttaaataatatagtaaca 824


Score = 176 bits (89), Expect = 3e-44
Identities = 89/89 (100%)
Strand = Plus / Plus


Query: 15 ttgaaatcaaagtaataatagtaacaaataaaaaattatataattttaatttttcaacta 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15 ttgaaatcaaagtaataatagtaacaaataaaaaattatataattttaatttttcaacta 74


Query: 75 ttacaacttaaacgttataacaacaaacc 103
|||||||||||||||||||||||||||||
Sbjct: 75 ttacaacttaaacgttataacaacaaacc 103


Score = 32.2 bits (16), Expect = 1.0
Identities = 16/16 (100%)
Strand = Plus / Minus


Query: 46 aaaattatataatttt 61
||||||||||||||||
Sbjct: 61 aaaattatataatttt 46


>Contig-U14029-1 (Contig-U14029-1Q) /CSM_Contig/Contig-U14029-1Q.Seq.d
Length = 895

Score = 69.9 bits (35), Expect = 5e-12
Identities = 53/59 (89%)
Strand = Plus / Plus


Query: 360 tgggatactgcaggtcaagaaagatatagagcaattacatctgcttattatcgtggtgc 418
|||||||||||||| |||||||||| |||| |||||||||| | ||||||||||||||
Sbjct: 226 tgggatactgcaggacaagaaagatttagaacaattacatcatcatattatcgtggtgc 284


Score = 38.2 bits (19), Expect = 0.016
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 793 aaatctggttgttgttaaa 811
|||||||||||||||||||
Sbjct: 634 aaatctggttgttgttaaa 652


Score = 34.2 bits (17), Expect = 0.25
Identities = 29/33 (87%)
Strand = Plus / Plus


Query: 219 ggtgatagtggtgttggcaaatcaaatctttta 251
|||||||||||||| || |||||| |||||||
Sbjct: 85 ggtgatagtggtgtaggtaaatcatgtctttta 117


>Contig-U12243-1 (Contig-U12243-1Q) /CSM_Contig/Contig-U12243-1Q.Seq.d
Length = 1637

Score = 63.9 bits (32), Expect = 3e-10
Identities = 53/60 (88%)
Strand = Plus / Plus


Query: 360 tgggatactgcaggtcaagaaagatatagagcaattacatctgcttattatcgtggtgca 419
|||||||||||||| |||||||||| ||| |||||||||| | |||||||||||||||
Sbjct: 1065 tgggatactgcaggacaagaaagattcagaacaattacatcatcatattatcgtggtgca 1124


Score = 32.2 bits (16), Expect = 1.0
Identities = 22/24 (91%)
Strand = Plus / Plus


Query: 219 ggtgatagtggtgttggcaaatca 242
|||||||||||||| || ||||||
Sbjct: 922 ggtgatagtggtgtaggtaaatca 945


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,171
Number of Sequences: 6905
Number of extensions: 14171
Number of successful extensions: 1730
Number of sequences better than 10.0: 216
length of query: 910
length of database: 5,674,871
effective HSP length: 16
effective length of query: 894
effective length of database: 5,564,391
effective search space: 4974565554
effective search space used: 4974565554
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.16
Homology vs DNA
Query= Contig-U14031-1 (Contig-U14031-1Q) /CSM_Contig/Contig-U14031-1Q.Seq.d
(910 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(U02925) Dictyostelium discoideum Ax3 Rab11 mRNA, complete cds. 1011 0.0 2
(C94272) Dictyostelium discoideum slug cDNA, clone SSK725. 557 0.0 2
(AU073073) Dictyostelium discoideum slug cDNA, clone SSF871. 234 5e-64 2
(C84806) Dictyostelium discoideum slug cDNA, clone SSF871. 254 5e-63 1
(AU074443) Dictyostelium discoideum slug cDNA, clone SSK725. 196 1e-52 2
(EW753320) sb_007_07I06_m13reverselong Onychiurus arcticus r... 139 1e-35 3
(FK081885) XABT137201.b1 Gateway compatible cien cDNA librar... 98 2e-33 4
(FK159137) XABT185731.b1 Gateway compatible cien cDNA librar... 100 8e-33 4
(BE579293) kq25d05.y1 TBN95TM-SSR Strongyloides stercoralis ... 109 1e-32 4
(BG227626) kq11g11.y1 TBN95TM-SSR Strongyloides stercoralis ... 109 1e-32 4
(EW748707) sb_006_04D21_m13reverselong Onychiurus arcticus d... 131 2e-31 2
(FF716101) XABT34878.fwd Gateway compatible cien cDNA librar... 100 3e-31 4
(BF015139) kq64g09.y1 TBN95TM-SSR Strongyloides stercoralis ... 109 5e-31 4
(FE260089) CAZN1027.rev CAZN Naegleria gruberi Flagellate St... 92 9e-31 3
(FE260090) CAZN1027.fwd CAZN Naegleria gruberi Flagellate St... 92 1e-30 3
(FK049598) XABT117612.b1 Gateway compatible cien cDNA librar... 92 1e-30 4
(FK060604) XABT124215.b1 Gateway compatible cien cDNA librar... 92 1e-30 4
(FF771212) XABT73426.fwd Gateway compatible cien cDNA librar... 92 1e-30 4
(FK054463) XABT120513.b1 Gateway compatible cien cDNA librar... 92 1e-30 4
(FF770890) XABT73208.fwd Gateway compatible cien cDNA librar... 92 2e-30 4
(BE028962) kp22h01.y1 TBN95TM-SSFH Strongyloides stercoralis... 109 2e-30 3
(BG225395) kp66g09.y1 TBN95TM-SSFH Strongyloides stercoralis... 109 2e-30 3
(BG225792) kp72a01.y1 TBN95TM-SSFH Strongyloides stercoralis... 109 2e-30 3
(BE030357) kp41h11.y1 TBN95TM-SSFH Strongyloides stercoralis... 109 2e-30 3
(FF807939) XABT98382.fwd Gateway compatible cien cDNA librar... 107 3e-30 3
(AV971835) Ciona intestinalis cDNA, clone:cicl11n04, 5' end,... 96 7e-30 3
(AV967689) Ciona intestinalis cDNA, clone:cieg23a19, 5' end,... 96 8e-30 3
(BW362897) Ciona intestinalis cDNA, clone:cima828g24, 5'end,... 96 9e-30 3
(BW363221) Ciona intestinalis cDNA, clone:cima829f18, 5'end,... 96 1e-29 3
(BW042207) Ciona intestinalis cDNA, clone:cibd049b02, 5' end... 96 1e-29 3
(FF717639) XABT35901.fwd Gateway compatible cien cDNA librar... 100 1e-29 3
(BW046185) Ciona intestinalis cDNA, clone:cibd005n13, 5' end... 96 1e-29 3
(BW192621) Ciona intestinalis cDNA, clone:ciad097e18, 5' end... 96 1e-29 3
(BW342429) Ciona intestinalis cDNA, clone:ciem821i10, 5'end,... 96 1e-29 3
(FF935471) CBWU71487.b1 Yutaka Satou unpublished cDNA librar... 96 1e-29 3
(BW448430) Ciona intestinalis cDNA, clone:cijv011f10, 5'end,... 96 1e-29 3
(FF875809) CBWU18083.b1 Yutaka Satou unpublished cDNA librar... 96 1e-29 3
(FF984993) CBWU97936.b1 Yutaka Satou unpublished cDNA librar... 96 1e-29 3
(BW477110) Ciona intestinalis cDNA, clone:cima007n05, 5'end,... 96 1e-29 3
(BW434404) Ciona intestinalis cDNA, clone:cijv028l19, 5'end,... 96 1e-29 3
(FF945730) CBWU77874.b1 Yutaka Satou unpublished cDNA librar... 96 1e-29 3
(FF808500) XABT98764.fwd Gateway compatible cien cDNA librar... 100 1e-29 3
(BW474533) Ciona intestinalis cDNA, clone:cima010h03, 5'end,... 96 1e-29 3
(BW486501) Ciona intestinalis cDNA, clone:cima056p07, 5'end,... 96 1e-29 3
(FK170894) XABT192934.b1 Gateway compatible cien cDNA librar... 100 1e-29 4
(BW486566) Ciona intestinalis cDNA, clone:cima005d09, 5'end,... 96 2e-29 3
(EW751681) sb_007_02N21_m13reverselong Onychiurus arcticus r... 123 4e-29 2
(FK089125) XABT141773.b1 Gateway compatible cien cDNA librar... 96 4e-29 3
(FF789957) XABT86059.fwd Gateway compatible cien cDNA librar... 92 8e-29 4
(FK178569) XABT197617.b1 Gateway compatible cien cDNA librar... 100 2e-28 3
(BW357570) Ciona intestinalis cDNA, clone:cima813d17, 5'end,... 96 5e-28 3
(FK084346) XABT138854.b1 Gateway compatible cien cDNA librar... 100 5e-28 3
(EW756962) sb_008_06O07_m13reverselong Onychiurus arcticus r... 119 5e-28 2
(AV976232) Ciona intestinalis cDNA, clone:cieg41f16, 5' end,... 88 2e-27 3
(FK085690) XABT139653.b1 Gateway compatible cien cDNA librar... 92 2e-27 3
(FF713295) XABT33015.fwd Gateway compatible cien cDNA librar... 92 2e-27 3
(BW032326) Ciona intestinalis cDNA, clone:cibd001m17, 5' end... 96 2e-27 3
(FK080388) XABT136270.b1 Gateway compatible cien cDNA librar... 100 3e-27 4
(BW053407) Ciona intestinalis cDNA, clone:cibd078g22, 5' end... 96 7e-27 3
(BW198393) Ciona intestinalis cDNA, clone:cicl067i06, 5' end... 90 3e-26 3
(AV960913) Ciona intestinalis cDNA, clone:cicl14f08, 5' end,... 88 3e-26 3
(BW053624) Ciona intestinalis cDNA, clone:cibd079b04, 5' end... 96 3e-26 3
(BP007537) Ciona intestinalis cDNA, clone:ciad44p04, 5' end,... 88 3e-26 3
(BW362623) Ciona intestinalis cDNA, clone:cima827k24, 5'end,... 88 3e-26 3
(FK078771) XABT135298.b1 Gateway compatible cien cDNA librar... 88 3e-26 3
(BW311030) Ciona intestinalis cDNA, clone:ciht009h02, 5' end... 88 3e-26 3
(AV973835) Ciona intestinalis cDNA, clone:cieg32o16, 5' end,... 88 3e-26 3
(AV888871) Ciona intestinalis cDNA, clone:rcicl31c05, 3' end... 84 3e-26 3
(BW370704) Ciona intestinalis cDNA, clone:cima850p23, 5'end,... 88 3e-26 3
(BW343265) Ciona intestinalis cDNA, clone:ciem824a08, 5'end,... 88 3e-26 3
(BW287104) Ciona intestinalis cDNA, clone:cigd032b23, 5' end... 88 3e-26 3
(BW049760) Ciona intestinalis cDNA, clone:cibd068h02, 5' end... 88 3e-26 3
(FK097445) XABT146849.b1 Gateway compatible cien cDNA librar... 88 3e-26 3
(FK204406) XABT213650.b1 Gateway compatible cien cDNA librar... 88 3e-26 3
(BW343792) Ciona intestinalis cDNA, clone:ciem825j14, 5'end,... 88 3e-26 3
(FK089338) XABT141906.b1 Gateway compatible cien cDNA librar... 88 3e-26 3
(FF877171) CBWU18962.b1 Yutaka Satou unpublished cDNA librar... 88 3e-26 3
(FF949358) CBWU80141.b1 Yutaka Satou unpublished cDNA librar... 88 3e-26 3
(FK159061) XABT185688.b1 Gateway compatible cien cDNA librar... 88 3e-26 3
(FF690663) XABT103384.fwd Gateway compatible cien cDNA libra... 88 3e-26 3
(FF910195) CBWU39776.b1 Yutaka Satou unpublished cDNA librar... 88 3e-26 3
(FF796958) XABT90710.fwd Gateway compatible cien cDNA librar... 88 3e-26 3
(BW029095) Ciona intestinalis cDNA, clone:cibd011h10, 5' end... 88 4e-26 3
(BW232643) Ciona intestinalis cDNA, clone:ciad103b03, 5' end... 88 4e-26 3
(BW035665) Ciona intestinalis cDNA, clone:cibd029g24, 5' end... 88 4e-26 3
(FK118507) XABT160940.b1 Gateway compatible cien cDNA librar... 88 4e-26 3
(FK067546) XABT128382.b1 Gateway compatible cien cDNA librar... 88 4e-26 3
(BW055102) Ciona intestinalis cDNA, clone:cibd082h08, 5' end... 88 4e-26 3
(FK100514) XABT148736.b1 Gateway compatible cien cDNA librar... 88 4e-26 3
(BW045979) Ciona intestinalis cDNA, clone:cibd005e08, 5' end... 88 4e-26 3
(BW035663) Ciona intestinalis cDNA, clone:cibd029g22, 5' end... 88 4e-26 3
(FF937369) CBWU72690.b1 Yutaka Satou unpublished cDNA librar... 88 4e-26 3
(FF757479) XABT64529.fwd Gateway compatible cien cDNA librar... 88 4e-26 3
(FF926929) CBWU65443.b1 Yutaka Satou unpublished cDNA librar... 88 4e-26 3
(FF987788) CBWU99654.b1 Yutaka Satou unpublished cDNA librar... 88 4e-26 3
(FF987628) CBWU99558.b1 Yutaka Satou unpublished cDNA librar... 88 4e-26 3
(FF931554) CBWU68689.b1 Yutaka Satou unpublished cDNA librar... 88 4e-26 3
(FF934105) CBWU70261.b1 Yutaka Satou unpublished cDNA librar... 88 4e-26 3
(BW482590) Ciona intestinalis cDNA, clone:cima054k23, 5'end,... 88 5e-26 3
(FF991911) CBWU109563.b1 Yutaka Satou unpublished cDNA libra... 88 5e-26 3

>(U02925) Dictyostelium discoideum Ax3 Rab11 mRNA, complete cds.
Length = 769

Score = 1011 bits (510), Expect(2) = 0.0
Identities = 516/518 (99%)
Strand = Plus / Plus


Query: 155 aataaagatgacttcaaaaggttcacaagaagaatacgactatttatataaaattgtact 214
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 60 aataaagatgacttcaaaaggatcacaagaagaatacgactatttatataaaattgtact 119


Query: 215 cattggtgatagtggtgttggcaaatcaaatcttttatccagattcacacgtaatgaatt 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 cattggtgatagtggtgttggcaaatcaaatcttttatccagattcacacgtaatgaatt 179


Query: 275 cagtttagagaccaaatcaaccattggtgtagaatttgcaactagaactattcaaactga 334
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 180 cagtttagagaccaaatcaaccattggtgtagaatttgcaactagaaccattcaaactga 239


Query: 335 aggtaaaactattaaagctcaagtgtgggatactgcaggtcaagaaagatatagagcaat 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 aggtaaaactattaaagctcaagtgtgggatactgcaggtcaagaaagatatagagcaat 299


Query: 395 tacatctgcttattatcgtggtgcagttggtgcattacttgtatatgatattgcaaagca 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tacatctgcttattatcgtggtgcagttggtgcattacttgtatatgatattgcaaagca 359


Query: 455 agcaacttataagagcgttgaaagatggattttagaattaagagaaaacgctgatcgtaa 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 agcaacttataagagcgttgaaagatggattttagaattaagagaaaacgctgatcgtaa 419


Query: 515 cattgaaattatgttggttggtaacaagagtgatttaagacacttacgtgaagtttcaac 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 cattgaaattatgttggttggtaacaagagtgatttaagacacttacgtgaagtttcaac 479


Query: 575 tgatgaagccaaagaattttcagaaaaacataaacttacttttattgaaacatctgcact 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tgatgaagccaaagaattttcagaaaaacataaacttacttttattgaaacatctgcact 539


Query: 635 tgattcaagcaatgtagaattagccttccaaaatattt 672
||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tgattcaagcaatgtagaattagccttccaaaatattt 577

Score = 278 bits (140), Expect(2) = 0.0
Identities = 140/140 (100%)
Strand = Plus / Plus


Query: 672 tattttaactcaaatttatcacattatgagccgtccaagccattcaactggtccacaaac 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tattttaactcaaatttatcacattatgagccgtccaagccattcaactggtccacaaac 632


Query: 732 tacaattgattcaaacaccgaaaccattatattaccaaccacctctgaaccaccagccgc 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 tacaattgattcaaacaccgaaaccattatattaccaaccacctctgaaccaccagccgc 692


Query: 792 caaatctggttgttgttaaa 811
||||||||||||||||||||
Sbjct: 693 caaatctggttgttgttaaa 712

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 816,404,310
Number of extensions: 49360635
Number of successful extensions: 4203071
Number of sequences better than 10.0: 2984
Length of query: 910
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 886
Effective length of database: 97,308,875,965
Effective search space: 86215664104990
Effective search space used: 86215664104990
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 9
Homology vs Protein
Query= Contig-U14031-1 (Contig-U14031-1Q) /CSM_Contig/Contig-U14031-1Q.Seq.d
(910 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(P36412) RecName: Full=Ras-related protein Rab-11A; &U02925_1(U... 332 e-112
DQ157704_1(DQ157704|pid:none) Aiptasia pulchella Rab11 protein m... 271 7e-74
AL670003_2(AL670003|pid:none) Neurospora crassa DNA linkage grou... 261 1e-72
DQ414564_1(DQ414564|pid:none) Suberites domuncula Rab11 gene, co... 266 3e-72
BC055141_1(BC055141|pid:none) Danio rerio zgc:63565, mRNA (cDNA ... 271 1e-71
AB035354_1(AB035354|pid:none) Drosophila melanogaster mRNA for D... 271 2e-71
AJ851582_1(AJ851582|pid:none) Gallus gallus mRNA for hypothetica... 270 5e-71
BC082421_1(BC082421|pid:none) Xenopus laevis hypothetical LOC494... 270 5e-71
AY220456_1(AY220456|pid:none) Limulus polyphemus rab11-2 mRNA, c... 270 5e-71
AY220748_1(AY220748|pid:none) Limulus polyphemus Rab11-1c mRNA, ... 270 5e-71
(P22129) RecName: Full=Ras-related protein Rab-11B; AltName: Ful... 270 5e-71
EU244432_1(EU244432|pid:none) Capra hircus RAB11B (rab11b) mRNA,... 270 6e-71
AY894025_1(AY894025|pid:none) Synthetic construct Homo sapiens c... 270 6e-71
EF560724_1(EF560724|pid:none) Homo sapiens clone DKFZp564C1023 R... 270 6e-71
(P46638) RecName: Full=Ras-related protein Rab-11B; &A55005(A55... 270 6e-71
AK297498_1(AK297498|pid:none) Homo sapiens cDNA FLJ61134 complet... 270 6e-71
CR541691_1(CR541691|pid:none) Homo sapiens full open reading fra... 270 6e-71
BT056265_1(BT056265|pid:none) Drosophila melanogaster FI09227 fu... 270 6e-71
(O35509) RecName: Full=Ras-related protein Rab-11B; &(Q15907) R... 270 6e-71
AY220749_1(AY220749|pid:none) Limulus polyphemus Rab11-1a mRNA, ... 269 8e-71
BT001785_1(BT001785|pid:none) Drosophila melanogaster RH21315 fu... 269 8e-71
BC087498_1(BC087498|pid:none) Xenopus laevis hypothetical LOC496... 269 1e-70
BC048889_1(BC048889|pid:none) Danio rerio RAB11B, member RAS onc... 269 1e-70
AF127669_1(AF127669|pid:none) Mus musculus small GTPase (Rab11a)... 269 1e-70
BC075268_1(BC075268|pid:none) Xenopus tropicalis RAB11B, member ... 269 1e-70
CP001160_488(CP001160|pid:none) Thalassiosira pseudonana CCMP133... 266 1e-70
BT077510_1(BT077510|pid:none) Lepeophtheirus salmonis Pacific fo... 266 1e-70
BC152630_1(BC152630|pid:none) Danio rerio zgc:92772, mRNA (cDNA ... 268 1e-70
CR536494_1(CR536494|pid:none) Homo sapiens full open reading fra... 268 1e-70
BC076247_1(BC076247|pid:none) Danio rerio zgc:92772, mRNA (cDNA ... 268 1e-70
BC041250_1(BC041250|pid:none) Xenopus laevis RAB11B, member RAS ... 268 1e-70
AF003139_1(AF003139|pid:none) Caenorhabditis elegans cosmid F53G... 268 2e-70
BT049157_1(BT049157|pid:none) Salmo salar clone ssal-rgb2-591-24... 268 2e-70
JC2487(JC2487) GTP-binding protein H-YPT3 - human &X79780_1(X79... 268 2e-70
BT045814_1(BT045814|pid:none) Salmo salar clone ssal-rgf-532-060... 267 3e-70
BC081187_1(BC081187|pid:none) Xenopus laevis MGC84419 protein, m... 267 4e-70
(Q2TA29) RecName: Full=Ras-related protein Rab-11A; &BC111143_1... 266 5e-70
CU638743_340(CU638743|pid:none) Podospora anserina genomic DNA c... 261 4e-69
AM920437_2206(AM920437|pid:none) Penicillium chrysogenum Wiscons... 263 5e-69
AM269968_23(AM269968|pid:none) Aspergillus niger contig An01c021... 263 8e-69
(Q39572) RecName: Full=Ras-related protein YPTC6; &JC4108(JC410... 258 3e-68
EF678326_1(EF678326|pid:none) Picea sitchensis clone WS02914_M23... 259 1e-67
AY099331_1(AY099331|pid:none) Periplaneta americana Rab11 mRNA, ... 254 3e-66
EF145933_1(EF145933|pid:none) Populus trichocarpa clone WS0114_G... 254 3e-66
BX649327_6(BX649327|pid:none) Zebrafish DNA sequence from clone ... 254 3e-66
(Q40193) RecName: Full=Ras-related protein Rab11C; &Z73951_1(Z7... 249 5e-66
EU954271_1(EU954271|pid:none) Zea mays clone 1460642 ras-related... 253 6e-66
AY632359_2(AY632359|pid:none) Gossypium hirsutum BAC 155C17, com... 249 1e-65
GN106045_1(GN106045|pid:none) Sequence 10826 from Patent WO20090... 244 1e-65
GN106085_1(GN106085|pid:none) Sequence 10866 from Patent WO20090... 243 1e-65
AC140549_17(AC140549|pid:none) Medicago truncatula clone mth2-28... 252 1e-65
EU626442_7(EU626442|pid:none) Gossypium raimondii clone BAC 031J... 249 2e-65
BT036850_1(BT036850|pid:none) Zea mays full-length cDNA clone ZM... 249 3e-65
AL021710_9(AL021710|pid:none) Arabidopsis thaliana DNA chromosom... 244 3e-65
AM462529_1(AM462529|pid:none) Vitis vinifera contig VV78X101776.... 241 3e-65
EU626443_5(EU626443|pid:none) Gossypioides kirkii clone BAC 096G... 248 4e-65
AC124143_12(AC124143|pid:none) Oryza sativa (japonica cultivar-g... 243 4e-65
EF144948_1(EF144948|pid:none) Populus trichocarpa clone WS0111_B... 244 6e-65
EU162609_23(EU162609|pid:none) Cleome spinosa clone contig83 BAC... 249 7e-65
BT069763_1(BT069763|pid:none) Zea mays full-length cDNA clone ZM... 249 7e-65
EU965206_1(EU965206|pid:none) Zea mays clone 284484 ras-related ... 249 7e-65
GN106065_1(GN106065|pid:none) Sequence 10846 from Patent WO20090... 240 7e-65
AC084818_20(AC084818|pid:none) Oryza sativa (japonica cultivar-g... 249 9e-65
AP008215_340(AP008215|pid:none) Oryza sativa (japonica cultivar-... 243 1e-64
AK071461_1(AK071461|pid:none) Oryza sativa Japonica Group cDNA c... 243 1e-64
BT037150_1(BT037150|pid:none) Zea mays full-length cDNA clone ZM... 248 2e-64
AM433288_1(AM433288|pid:none) Vitis vinifera contig VV78X079268.... 240 2e-64
BT035344_1(BT035344|pid:none) Zea mays full-length cDNA clone ZM... 243 3e-64
(Q39434) RecName: Full=Ras-related protein Rab2BV; &T14566(T145... 247 3e-64
BT039216_1(BT039216|pid:none) Zea mays full-length cDNA clone ZM... 240 4e-64
BT033192_1(BT033192|pid:none) Zea mays full-length cDNA clone ZM... 247 4e-64
AM484190_1(AM484190|pid:none) Vitis vinifera contig VV78X052697.... 247 4e-64
AF532625_1(AF532625|pid:none) Glycine max GTP-binding protein mR... 244 5e-64
AY904354_1(AY904354|pid:none) Gracilariopsis lemaneiformis small... 246 6e-64
AC093018_9(AC093018|pid:none) Oryza sativa chromosome 3 BAC OSJN... 246 1e-63
EU958646_1(EU958646|pid:none) Zea mays clone 1707478 ras-related... 246 1e-63
AB169492_1(AB169492|pid:none) Macaca fascicularis brain cDNA, cl... 245 2e-63
AK071303_1(AK071303|pid:none) Oryza sativa Japonica Group cDNA c... 245 2e-63
AB015472_10(AB015472|pid:none) Arabidopsis thaliana genomic DNA,... 245 2e-63
AY690483_1(AY690483|pid:none) Triticum aestivum rab GTP-binding ... 239 2e-63
AM432734_2(AM432734|pid:none) Vitis vinifera contig VV78X219500.... 244 2e-63
CU928171_64(CU928171|pid:none) Kluyveromyces thermotolerans stra... 244 4e-63
AM471469_2(AM471469|pid:none) Vitis vinifera contig VV78X014719.... 243 4e-63
CU928181_338(CU928181|pid:none) Zygosaccharomyces rouxii strain ... 243 8e-63
GN105993_1(GN105993|pid:none) Sequence 10774 from Patent WO20090... 242 1e-62
AY585950_1(AY585950|pid:none) Paxillus involutus strain ATCC 200... 242 1e-62
EF086736_1(EF086736|pid:none) Picea sitchensis clone WS02731_C01... 242 1e-62
(Q9FK68) RecName: Full=Ras-related protein RABA1c; &AB012245_16... 241 1e-62
AK060095_1(AK060095|pid:none) Oryza sativa Japonica Group cDNA c... 241 2e-62
AC130603_13(AC130603|pid:none) Oryza sativa (japonica cultivar-g... 241 2e-62
Z73956_1(Z73956|pid:none) L.japonicus mRNA for small GTP-binding... 232 2e-62
AY815506_1(AY815506|pid:none) Schistosoma japonicum SJCHGC02859 ... 241 3e-62
CR762386_2(CR762386|pid:none) Zebrafish DNA sequence from clone ... 241 3e-62
AB016890_5(AB016890|pid:none) Arabidopsis thaliana genomic DNA, ... 241 3e-62
CR380949_94(CR380949|pid:none) Candida glabrata strain CBS138 ch... 241 3e-62
(Q40195) RecName: Full=Ras-related protein Rab11E; &Z73953_1(Z7... 240 3e-62
(Q39222) RecName: Full=Ras-related protein RABA1b; AltName: Full... 240 4e-62
EU952347_1(EU952347|pid:none) Zea mays clone 1278162 ras-related... 240 4e-62
BT064711_1(BT064711|pid:none) Zea mays full-length cDNA clone ZM... 240 5e-62
CR382134_161(CR382134|pid:none) Debaryomyces hansenii strain CBS... 240 5e-62
D12546_1(D12546|pid:none) Pisum sativum mRNA for GTP-binding pro... 237 6e-62
AK300008_1(AK300008|pid:none) Homo sapiens cDNA FLJ51542 complet... 239 7e-62
CR380957_399(CR380957|pid:none) Candida glabrata strain CBS138 c... 239 9e-62
(Q40523) RecName: Full=Ras-related protein Rab11A; &L29271_1(L2... 236 1e-61
FN357857_2(FN357857|pid:none) Schistosoma mansoni genome sequenc... 239 1e-61
DQ446594_1(DQ446594|pid:none) Arabidopsis thaliana clone pENTR22... 234 1e-61
FM992695_664(FM992695|pid:none) Candida dubliniensis CD36 chromo... 238 2e-61
AE016818_773(AE016818|pid:none) Ashbya gossypii (= Eremothecium ... 238 2e-61
(Q01111) RecName: Full=Ras-related protein YPT3; &S23523(S23523... 238 2e-61
(Q40194) RecName: Full=Ras-related protein Rab11D; &Z73952_1(Z7... 237 2e-61
AF030183_1(AF030183|pid:none) Entamoeba histolytica GTP-binding ... 238 3e-61
(Q40723) RecName: Full=Ras-related protein RGP2; AltName: Full=G... 238 3e-61
AF532626_1(AF532626|pid:none) Glycine max small GTP-binding prot... 238 3e-61
AC010155_2(AC010155|pid:none) Genomic sequence for Arabidopsis t... 236 3e-61
AY084274_1(AY084274|pid:none) Arabidopsis thaliana clone 102017 ... 237 3e-61
AC138015_11(AC138015|pid:none) Medicago truncatula clone mth2-34... 237 5e-61
(P51996) RecName: Full=GTP-binding protein YPT32/YPT11; AltName:... 237 5e-61
BT038097_1(BT038097|pid:none) Zea mays full-length cDNA clone ZM... 236 6e-61
(P38555) RecName: Full=GTP-binding protein YPT31/YPT8; AltName: ... 236 8e-61
AB241229_1(AB241229|pid:none) Pyrsonympha grandis RsSmRab11_1 mR... 236 1e-60
BT074063_1(BT074063|pid:none) Oncorhynchus mykiss clone omyk-evo... 236 1e-60
AJ245570_1(AJ245570|pid:none) Lycopersicon esculentum mRNA for R... 236 1e-60
FN314406_1(FN314406|pid:none) Schistosoma japonicum isolate Anhu... 235 1e-60
AY815772_1(AY815772|pid:none) Schistosoma japonicum SJCHGC09130 ... 235 1e-60
FN314407_1(FN314407|pid:none) Schistosoma japonicum isolate Anhu... 235 1e-60
GN106149_1(GN106149|pid:none) Sequence 10930 from Patent WO20090... 234 2e-60
GN106119_1(GN106119|pid:none) Sequence 10900 from Patent WO20090... 234 3e-60
GN080103_1(GN080103|pid:none) Sequence 706 from Patent WO2009027... 234 3e-60
AC140545_16(AC140545|pid:none) Medicago truncatula clone mth2-11... 234 4e-60
Z71276_1(Z71276|pid:none) M.indica mRNA for small GTPase. 234 4e-60
CR954202_213(CR954202|pid:none) Ostreococcus tauri strain OTTH05... 233 5e-60
AK111561_1(AK111561|pid:none) Oryza sativa Japonica Group cDNA c... 233 9e-60
CP000582_359(CP000582|pid:none) Ostreococcus lucimarinus CCE9901... 232 1e-59
FN392319_1319(FN392319|pid:none) Pichia pastoris GS115 chromosom... 231 2e-59
BT084300_1(BT084300|pid:none) Zea mays full-length cDNA clone ZM... 231 2e-59
BT057635_1(BT057635|pid:none) Salmo salar clone ssal-eve-504-180... 230 6e-59
CR382122_22(CR382122|pid:none) Kluyveromyces lactis strain NRRL ... 227 4e-58
BT075660_1(BT075660|pid:none) Osmerus mordax clone omor-eva-509-... 226 8e-58
AB024025_4(AB024025|pid:none) Arabidopsis thaliana genomic DNA, ... 223 2e-57
BT073832_1(BT073832|pid:none) Oncorhynchus mykiss clone omyk-evo... 225 2e-57
BT068335_1(BT068335|pid:none) Zea mays full-length cDNA clone ZM... 224 2e-57
D12542_1(D12542|pid:none) Pisum sativum mRNA for GTP-binding pro... 223 5e-57
AF274025_1(AF274025|pid:none) Homo sapiens GTP-binding protein R... 223 7e-57
AF083124_1(AF083124|pid:none) Homo sapiens CATX-8 mRNA, complete... 223 7e-57
CR932518_1(CR932518|pid:none) Paramecium tetraurelia, Small GTPa... 223 7e-57
BT037200_1(BT037200|pid:none) Zea mays full-length cDNA clone ZM... 223 9e-57
(P46629) RecName: Full=Ras-related protein Rab-25; &A48500(A485... 222 2e-56
(P25766) RecName: Full=Ras-related protein RGP1; AltName: Full=G... 221 2e-56
BT043430_1(BT043430|pid:none) Zea mays full-length cDNA clone ZM... 221 2e-56
BC120091_1(BC120091|pid:none) Bos taurus RAB25, member RAS oncog... 221 3e-56
(Q58DW6) RecName: Full=Ras-related protein Rab-25; &BT021481_1(... 221 3e-56
BT051415_1(BT051415|pid:none) Medicago truncatula clone MTYF1_F2... 221 3e-56
BC086715_1(BC086715|pid:none) Danio rerio RAB25, member RAS onco... 220 4e-56
BX890617_2(BX890617|pid:none) Zebrafish DNA sequence from clone ... 220 4e-56
(Q40191) RecName: Full=Ras-related protein Rab11A; &Z73949_1(Z7... 220 6e-56
AM438608_1(AM438608|pid:none) Vitis vinifera contig VV78X052328.... 213 7e-56
AC007508_21(AC007508|pid:none) Genomic sequence for Arabidopsis ... 218 7e-56
CR933429_1(CR933429|pid:none) Paramecium tetraurelia, Small GTPa... 219 8e-56
(Q9WTL2) RecName: Full=Ras-related protein Rab-25; &AB232620_1(... 219 1e-55
AY088624_1(AY088624|pid:none) Arabidopsis thaliana clone 8545 mR... 218 2e-55
DQ019037_1(DQ019037|pid:none) Trichomonas vaginalis strain G3 sm... 218 2e-55
AL035708_16(AL035708|pid:none) Arabidopsis thaliana DNA chromoso... 218 2e-55
BC168745_1(BC168745|pid:none) Rattus norvegicus RAB25, member RA... 218 2e-55
U46926_1(U46926|pid:none) Arabidopsis thaliana GTP-binding prote... 218 2e-55
AC155344_30(AC155344|pid:none) Brassica rapa subsp. pekinensis c... 218 3e-55
AB470307_1(AB470307|pid:none) Nicotiana tabacum NtRab11D mRNA fo... 218 3e-55
AC183494_13(AC183494|pid:none) Brassica oleracea Contig C, compl... 209 4e-55
AK102491_1(AK102491|pid:none) Oryza sativa Japonica Group cDNA c... 214 4e-55
AM459225_1(AM459225|pid:none) Vitis vinifera contig VV78X087264.... 217 5e-55
AB025628_11(AB025628|pid:none) Arabidopsis thaliana genomic DNA,... 209 8e-55
D31905_1(D31905|pid:none) Zea mays mRNA for mgp1 GTP-binding pro... 216 1e-54
AC183493_10(AC183493|pid:none) Brassica oleracea Contig B, compl... 206 2e-54
EF085830_1(EF085830|pid:none) Picea sitchensis clone WS0286_P20 ... 215 2e-54
Z93391_3(Z93391|pid:none) Caenorhabditis elegans Cosmid W04G5, c... 214 2e-54
(Q550H6) RecName: Full=Ras-related protein Rab-11C; 214 4e-54
EF083999_1(EF083999|pid:none) Picea sitchensis clone WS0281_E05 ... 214 4e-54
AC183495_20(AC183495|pid:none) Brassica oleracea Contig A, compl... 207 7e-54
BT035582_1(BT035582|pid:none) Zea mays full-length cDNA clone ZM... 213 7e-54
AB013395_22(AB013395|pid:none) Arabidopsis thaliana genomic DNA,... 213 9e-54
(Q40520) RecName: Full=Ras-related protein Rab11C; &L29268_1(L2... 212 2e-53
AC069472_3(AC069472|pid:none) Arabidopsis thaliana chromosome 3 ... 211 2e-53
AY815497_1(AY815497|pid:none) Schistosoma japonicum SJCHGC05511 ... 211 4e-53
EF677765_1(EF677765|pid:none) Picea sitchensis clone WS02774_L10... 211 4e-53
EU951907_1(EU951907|pid:none) Zea mays clone 1062297 ras-related... 210 5e-53
S45023(S45023) GTP-binding protein Rab - alfalfa &X79278_1(X792... 210 6e-53
AK134125_1(AK134125|pid:none) Mus musculus adult male thymus cDN... 210 6e-53
AB197058_1(AB197058|pid:none) Entamoeba histolytica gene for sma... 209 8e-53
AB482179_1(AB482179|pid:none) Babesia bigemina Rab11 mRNA for sm... 209 8e-53
BT071033_1(BT071033|pid:none) Picea sitchensis clone WS02766_M18... 209 1e-52
(P19892) RecName: Full=Ras-related protein ARA-1; &AC009999_8(A... 207 3e-52
BT006190_1(BT006190|pid:none) Arabidopsis thaliana clone C00163 ... 207 3e-52
CR932582_1(CR932582|pid:none) Paramecium tetraurelia, Small GTPa... 207 4e-52
Z73955_1(Z73955|pid:none) L.japonicus mRNA for small GTP-binding... 206 7e-52
AC007071_20(AC007071|pid:none) Arabidopsis thaliana chromosome 2... 205 1e-51
BT051823_1(BT051823|pid:none) Medicago truncatula clone MTYF5_F6... 204 3e-51
AJ697970_1(AJ697970|pid:none) Medicago sativa rab11f gene for sm... 204 3e-51
L12395_1(L12395|pid:none) Brassica napus small GTP-binding prote... 204 3e-51
D12541_1(D12541|pid:none) Pisum sativum mRNA for GTP-binding pro... 204 4e-51
S41432(S41432)GTP-binding protein, ras-like (clone vfa-yptx) - f... 203 7e-51
AC069473_2(AC069473|pid:none) Arabidopsis thaliana chromosome 3 ... 202 2e-50
AC034107_21(AC034107|pid:none) Sequence of BAC T10F20 from Arabi... 202 2e-50
AK228658_1(AK228658|pid:none) Arabidopsis thaliana mRNA for hypo... 202 2e-50
L29272_1(L29272|pid:none) Nicotiana tabacum SR1 Nt-rab11e mRNA, ... 201 3e-50
AC012679_5(AC012679|pid:none) Arabidopsis thaliana chromosome 1 ... 201 4e-50
AP003614_3(AP003614|pid:none) Oryza sativa Japonica Group genomi... 200 5e-50
AC117075_79(AC117075|pid:none) Dictyostelium discoideum chromoso... 200 5e-50
BT079779_1(BT079779|pid:none) Esox lucius clone eluc-evq-513-136... 199 8e-50
Z73950_1(Z73950|pid:none) L.japonicus mRNA for small GTP-binding... 199 1e-49
(P28187) RecName: Full=Ras-related protein ARA-4; &AC004450_5(A... 199 1e-49
CR940347_17(CR940347|pid:none) Theileria annulata strain Ankara ... 197 3e-49
DQ825390_1(DQ825390|pid:none) Theileria parva strain Muguga smal... 197 3e-49
AC023628_1(AC023628|pid:none) Arabidopsis thaliana chromosome I ... 196 1e-48
CR933456_1(CR933456|pid:none) Paramecium tetraurelia, Small GTPa... 194 4e-48
DQ810282_29(DQ810282|pid:none) Oryza brachyantha BAC 0002C07, co... 192 2e-47
CR933420_1(CR933420|pid:none) Paramecium tetraurelia, Small GTPa... 187 5e-46
AJ871359_1(AJ871359|pid:none) Nyctotherus ovalis partial gene fo... 186 9e-46
AC069551_18(AC069551|pid:none) Genomic sequence for Arabidopsis ... 186 9e-46
CR932528_1(CR932528|pid:none) Paramecium tetraurelia, Small GTPa... 184 5e-45
(Q01890) RecName: Full=Ras-like GTP-binding protein YPT1; &JC53... 182 2e-44
AJ879563_1(AJ879563|pid:none) Plasmodium falciparum mRNA for Rab... 181 4e-44
AM910994_134(AM910994|pid:none) Plasmodium knowlesi strain H chr... 180 5e-44
CR932686_1(CR932686|pid:none) Paramecium tetraurelia, Small GTPa... 179 1e-43
FN392321_231(FN392321|pid:none) Pichia pastoris GS115 chromosome... 179 1e-43
AF460175_1(AF460175|pid:none) Giardia intestinalis strain WBC6 G... 178 2e-43
D12549_1(D12549|pid:none) Pisum sativum mRNA for GTP-binding pro... 177 3e-43
EU365390_1(EU365390|pid:none) Euplotes octocarinatus Rab GTPase ... 177 4e-43
CR933388_1(CR933388|pid:none) Paramecium tetraurelia, Small GTPa... 177 4e-43
CU928171_789(CU928171|pid:none) Kluyveromyces thermotolerans str... 177 4e-43
CR380957_540(CR380957|pid:none) Candida glabrata strain CBS138 c... 177 4e-43
(P01123) RecName: Full=GTP-binding protein YPT1; AltName: Full=R... 177 6e-43
X00209_2(X00209|pid:none) Yeast YP2 gene The YP2 protein shows h... 177 6e-43
AC159435_18(AC159435|pid:none) Trypanosoma brucei chromosome 8 c... 177 6e-43
(Q2HJH2) RecName: Full=Ras-related protein Rab-1B; &BC105393_1(... 176 7e-43
CR533462_1(CR533462|pid:none) Homo sapiens full open reading fra... 176 7e-43
(Q5RE13) RecName: Full=Ras-related protein Rab-1B; &(Q9H0U4) Re... 176 7e-43
(Q9D1G1) RecName: Full=Ras-related protein Rab-1B; &AB232584_1(... 176 1e-42
CR382124_213(CR382124|pid:none) Kluyveromyces lactis strain NRRL... 176 1e-42
AM502228_126(AM502228|pid:none) Leishmania infantum chromosome 10. 176 1e-42
(P10536) RecName: Full=Ras-related protein Rab-1B; &X13905_1(X1... 176 1e-42
B86153(B86153) ARA-5 [imported] - Arabidopsis thaliana &U89959_... 176 1e-42
E42148(E42148)GTP-binding protein rab14 - rat 176 1e-42
AK042020_1(AK042020|pid:none) Mus musculus 3 days neonate thymus... 175 2e-42
BT051367_1(BT051367|pid:none) Medicago truncatula clone MTYF1_F2... 175 2e-42
(Q39570) RecName: Full=GTP-binding protein YPTC4; &JC4106(JC410... 175 2e-42
EF145603_1(EF145603|pid:none) Populus trichocarpa clone WS01126_... 175 2e-42
AF108883_1(AF108883|pid:none) Capsicum annuum small GTP-binding ... 175 2e-42
GN105859_1(GN105859|pid:none) Sequence 10640 from Patent WO20090... 175 2e-42
DQ443136_1(DQ443136|pid:none) Bombyx mori small GTP binding prot... 175 2e-42
BT052509_1(BT052509|pid:none) Medicago truncatula clone MTYFD_FE... 174 3e-42
FN357538_13(FN357538|pid:none) Schistosoma mansoni genome sequen... 174 3e-42
S06147(S06147;S03189)GTP-binding protein rab1B - rat 174 3e-42
BC150404_1(BC150404|pid:none) Danio rerio zgc:171927, mRNA (cDNA... 174 4e-42
AM494947_100(AM494947|pid:none) Leishmania braziliensis chromoso... 174 4e-42
BT034664_1(BT034664|pid:none) Zea mays full-length cDNA clone ZM... 174 5e-42
D12548_1(D12548|pid:none) Pisum sativum mRNA for GTP-binding pro... 174 5e-42
T23530(T23530) hypothetical protein K09A9.2 - Caenorhabditis ele... 174 5e-42
DQ414556_1(DQ414556|pid:none) Suberites domuncula Rab1 gene, com... 173 6e-42
AJ307662_21(AJ307662|pid:none) Oryza sativa genomic DNA fragment... 173 6e-42
S34253(S34253) GTP-binding protein, ras-related - common tobacco... 173 6e-42
BC097013_1(BC097013|pid:none) Danio rerio zgc:86773, mRNA (cDNA ... 173 6e-42
AK059888_1(AK059888|pid:none) Oryza sativa Japonica Group cDNA c... 173 6e-42
AF101310_4(AF101310|pid:none) Caenorhabditis elegans cosmid C39F... 173 6e-42
AE017352_188(AE017352|pid:none) Cryptococcus neoformans var. neo... 173 6e-42
CP001323_241(CP001323|pid:none) Micromonas sp. RCC299 chromosome... 173 6e-42
(P61017) RecName: Full=Ras-related protein Rab-4B; &(P61018) Re... 173 6e-42
GM977145_1(GM977145|pid:none) Sequence 53 from Patent WO20081456... 173 6e-42
AF408432_1(AF408432|pid:none) Mus musculus GTP-binding protein R... 173 6e-42
(Q53B90) RecName: Full=Ras-related protein Rab-43; &AY593256_1(... 173 8e-42
AL137068_10(AL137068|pid:none) Human DNA sequence from clone RP1... 173 8e-42
AB232608_1(AB232608|pid:none) Mus musculus mRNA for Rab13, compl... 173 8e-42
AY069563_1(AY069563|pid:none) Drosophila melanogaster LD29476 fu... 173 8e-42
(Q9DD03) RecName: Full=Ras-related protein Rab-13; &AK002303_1(... 173 8e-42
BT070586_1(BT070586|pid:none) Picea sitchensis clone WS02737_M21... 173 8e-42
AJ968959_1(AJ968959|pid:none) Mus musculus mRNA for RAB14 protei... 173 8e-42
GM977157_1(GM977157|pid:none) Sequence 65 from Patent WO20081456... 173 8e-42
CP000497_244(CP000497|pid:none) Pichia stipitis CBS 6054 chromos... 173 8e-42
BT045578_1(BT045578|pid:none) Salmo salar clone ssal-rgf-525-209... 173 8e-42
FM992688_325(FM992688|pid:none) Candida dubliniensis CD36 chromo... 173 8e-42
AF330211_1(AF330211|pid:none) Candida albicans small GTP-binding... 173 8e-42
(P61107) RecName: Full=Ras-related protein Rab-14; &(Q52NJ6) Re... 173 8e-42
(Q05974) RecName: Full=Ras-related protein Rab-1A; &S38339(S383... 172 1e-41
CS559708_1(CS559708|pid:none) Sequence 295 from Patent WO2006032... 172 1e-41
(P22125) RecName: Full=Ras-related protein ORAB-1; &M38393_1(M3... 172 1e-41
BT039522_1(BT039522|pid:none) Zea mays full-length cDNA clone ZM... 172 1e-41
(Q86YS6) RecName: Full=Ras-related protein Rab-43; AltName: Full... 172 1e-41
BC045374_1(BC045374|pid:none) Danio rerio RAB14, member RAS onco... 172 1e-41
CS560194_1(CS560194|pid:none) Sequence 781 from Patent WO2006032... 172 1e-41
GN105853_1(GN105853|pid:none) Sequence 10634 from Patent WO20090... 172 1e-41
(P11620) RecName: Full=GTP-binding protein ypt1; &AL136536_10(A... 172 1e-41
GN080089_1(GN080089|pid:none) Sequence 692 from Patent WO2009027... 172 1e-41
GN106197_1(GN106197|pid:none) Sequence 10978 from Patent WO20090... 172 1e-41
BC045014_1(BC045014|pid:none) Xenopus laevis RAB1, member RAS on... 172 1e-41
EU284879_1(EU284879|pid:none) TSA: Elaeis guineensis EgEfMPOB000... 172 1e-41
GN105857_1(GN105857|pid:none) Sequence 10638 from Patent WO20090... 172 1e-41
AC183496_25(AC183496|pid:none) Brassica oleracea, *** SEQUENCING... 172 1e-41
BT059700_1(BT059700|pid:none) Salmo salar clone ssal-rgf-002-342... 172 1e-41
EF091876_1(EF091876|pid:none) Solanum tuberosum ras-related GTP ... 172 1e-41
(P61019) RecName: Full=Ras-related protein Rab-2A; &(P61105) Re... 172 2e-41
(Q90965) RecName: Full=Ras-related protein Rab-2A; &S52325(S523... 172 2e-41
(Q52NJ2) RecName: Full=Ras-related protein Rab-1A; &AY996813_1(... 172 2e-41
BT043649_1(BT043649|pid:none) Salmo salar clone HM5_0924 RAB2A, ... 172 2e-41
EF103367_1(EF103367|pid:none) Haliotis discus discus Ras-related... 172 2e-41
EF144402_1(EF144402|pid:none) Populus trichocarpa clone PX0019_E... 172 2e-41
(P53994) RecName: Full=Ras-related protein Rab-2A; &AB232585_1(... 172 2e-41
GN106151_1(GN106151|pid:none) Sequence 10932 from Patent WO20090... 172 2e-41
GM977161_1(GM977161|pid:none) Sequence 69 from Patent WO20081456... 172 2e-41
(P40392) RecName: Full=Ras-related protein RIC1; &AK243597_1(AK... 171 2e-41
EF084887_1(EF084887|pid:none) Picea sitchensis clone WS0292_K24 ... 171 2e-41
AL606522_3(AL606522|pid:none) Mouse DNA sequence from clone RP23... 171 2e-41
DQ214474_1(DQ214474|pid:none) Taeniopygia guttata clone 0063P003... 171 2e-41
GN105983_1(GN105983|pid:none) Sequence 10764 from Patent WO20090... 171 2e-41
GN106013_1(GN106013|pid:none) Sequence 10794 from Patent WO20090... 171 2e-41
GN106155_1(GN106155|pid:none) Sequence 10936 from Patent WO20090... 171 2e-41
AC183493_34(AC183493|pid:none) Brassica oleracea Contig B, compl... 171 2e-41
GN106077_1(GN106077|pid:none) Sequence 10858 from Patent WO20090... 171 2e-41
GN106117_1(GN106117|pid:none) Sequence 10898 from Patent WO20090... 171 2e-41
(P62820) RecName: Full=Ras-related protein Rab-1A; AltName: Full... 171 2e-41
E71440(E71440)GTP-binding protein RAB2A - Arabidopsis thaliana 171 3e-41
BC142846_1(BC142846|pid:none) Danio rerio RAB8B, member RAS onco... 171 3e-41
GN106059_1(GN106059|pid:none) Sequence 10840 from Patent WO20090... 171 3e-41
(Q92930) RecName: Full=Ras-related protein Rab-8B; &AB038995_1(... 171 3e-41
DQ414558_1(DQ414558|pid:none) Suberites domuncula Rab2 gene, com... 171 3e-41
Z73937_1(Z73937|pid:none) L.japonicus mRNA for small GTP-binding... 171 3e-41
BC058341_1(BC058341|pid:none) Danio rerio RAB14, member RAS onco... 171 3e-41
U02927_1(U02927|pid:none) Dictyostelium discoideum Ax3 Rab4 mRNA... 171 3e-41
Z73932_1(Z73932|pid:none) L.japonicus mRNA for small GTP-binding... 171 3e-41
AL161545_37(AL161545|pid:none) Arabidopsis thaliana DNA chromoso... 171 3e-41
CP000587_71(CP000587|pid:none) Ostreococcus lucimarinus CCE9901 ... 171 4e-41
J02998_1(J02998|pid:none) Rat ras-related protein mRNA, clone NT... 171 4e-41
AE013599_198(AE013599|pid:none) Drosophila melanogaster chromoso... 171 4e-41
BT076392_1(BT076392|pid:none) Caligus rogercresseyi clone crog-e... 171 4e-41
BC124978_1(BC124978|pid:none) Xenopus laevis hypothetical protei... 171 4e-41
FN320591_1(FN320591|pid:none) Schistosoma japonicum isolate Anhu... 171 4e-41
AY223134_1(AY223134|pid:none) Schistosoma japonicum SJCHGC02833 ... 171 4e-41
EF146669_1(EF146669|pid:none) Populus trichocarpa clone WS01211_... 171 4e-41
BT077989_1(BT077989|pid:none) Lepeophtheirus salmonis Pacific fo... 171 4e-41
AY891305_1(AY891305|pid:none) Synthetic construct Homo sapiens c... 171 4e-41
BC135798_1(BC135798|pid:none) Xenopus tropicalis RAB8B, member R... 170 5e-41
(Q39571) RecName: Full=GTP-binding protein YPTC1; &DQ222936_1(D... 170 5e-41
DQ414565_1(DQ414565|pid:none) Suberites domuncula Rab14 gene, pa... 170 5e-41
AY893729_1(AY893729|pid:none) Synthetic construct Homo sapiens c... 170 5e-41
AF324990_1(AF324990|pid:none) Arabidopsis thaliana AT5g47200 (AT... 170 5e-41
S71559(S71559) GTP-binding protein rab2 - soybean &U32185_1(U32... 170 5e-41
BT057068_1(BT057068|pid:none) Salmo salar clone ssal-eve-570-039... 170 5e-41
GN106111_1(GN106111|pid:none) Sequence 10892 from Patent WO20090... 170 5e-41
(Q5KTJ6) RecName: Full=Ras-related protein Rab-13; &AB158369_1(... 170 5e-41
BC094846_1(BC094846|pid:none) Homo sapiens RAB13, member RAS onc... 170 5e-41
(Q05975) RecName: Full=Ras-related protein Rab-2; &S38341(S3834... 170 5e-41
AK151085_1(AK151085|pid:none) Mus musculus bone marrow macrophag... 170 5e-41
BC078493_1(BC078493|pid:none) Xenopus laevis MGC85265 protein, m... 170 5e-41
BC127330_1(BC127330|pid:none) Xenopus tropicalis RAB8B, member R... 170 5e-41
(P51153) RecName: Full=Ras-related protein Rab-13; AltName: Full... 170 5e-41
(Q58DS5) RecName: Full=Ras-related protein Rab-13; &BT021522_1(... 170 5e-41
BC129421_1(BC129421|pid:none) Danio rerio zgc:158741, mRNA (cDNA... 170 7e-41
BC044974_1(BC044974|pid:none) Xenopus laevis RAB4A, member RAS o... 170 7e-41
Y08425_1(Y08425|pid:none) N.plumbaginifolia mRNA for small GTP-b... 170 7e-41
DQ214475_1(DQ214475|pid:none) Taeniopygia guttata clone 0058P004... 170 7e-41
BC071068_1(BC071068|pid:none) Xenopus laevis MGC78967 protein, m... 170 7e-41
AE016815_434(AE016815|pid:none) Ashbya gossypii (= Eremothecium ... 170 7e-41
AP008208_2028(AP008208|pid:none) Oryza sativa (japonica cultivar... 170 7e-41
EF710656_1(EF710656|pid:none) Glyptapanteles indiensis clone BAC... 170 7e-41
CR382130_329(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 169 9e-41
CR954207_70(CR954207|pid:none) Ostreococcus tauri strain OTTH059... 169 9e-41
AK059799_1(AK059799|pid:none) Oryza sativa Japonica Group cDNA c... 169 9e-41
DQ372931_1(DQ372931|pid:none) Pinus pinaster Rab1 mRNA, complete... 169 9e-41
AY060495_1(AY060495|pid:none) Arabidopsis thaliana AT4g17530/dl4... 169 9e-41
EF086613_1(EF086613|pid:none) Picea sitchensis clone WS02920_I20... 169 9e-41
BT037824_1(BT037824|pid:none) Zea mays full-length cDNA clone ZM... 169 9e-41
AB112933_1(AB112933|pid:none) Drosophila melanogaster rab8 mRNA ... 169 9e-41
D38625(D38625)GTP-binding protein o-rab1 - electric ray (Discopy... 169 1e-40
AK129477_1(AK129477|pid:none) Mus musculus mRNA for mKIAA3012 pr... 169 1e-40
GN106165_1(GN106165|pid:none) Sequence 10946 from Patent WO20090... 169 1e-40
(P34139) RecName: Full=Ras-related protein Rab-1A; 169 1e-40
AF217985_1(AF217985|pid:none) Homo sapiens clone PP1596 unknown ... 169 1e-40
(P49103) RecName: Full=Ras-related protein Rab-2-A; &T02242(T02... 169 1e-40
(P49104) RecName: Full=Ras-related protein Rab-2-B; &BT068076_1... 169 2e-40
AF468652_1(AF468652|pid:none) Homo sapiens RAB2B mRNA, complete ... 169 2e-40
DQ397202_1(DQ397202|pid:none) Saccharum officinarum small GTP bi... 169 2e-40
AB076904_1(AB076904|pid:none) Ciona intestinalis Ci-rab2 mRNA fo... 169 2e-40
BC134059_1(BC134059|pid:none) Danio rerio RAB8A, member RAS onco... 169 2e-40
BX647601_1(BX647601|pid:none) Homo sapiens mRNA; cDNA DKFZp313C1... 169 2e-40
BT080552_1(BT080552|pid:none) Caligus clemensi clone ccle-evs-51... 168 2e-40
BC118271_1(BC118271|pid:none) Bos taurus RAB2A, member RAS oncog... 168 2e-40
BT081291_1(BT081291|pid:none) Caligus clemensi clone ccle-evs-51... 168 2e-40
CR932696_1(CR932696|pid:none) Paramecium tetraurelia, Small GTPa... 168 2e-40
AB463206_1(AB463206|pid:none) Synthetic construct DNA, clone: pF... 168 2e-40
AC161399_25(AC161399|pid:none) Medicago truncatula chromosome 2 ... 168 2e-40
AJ810707_1(AJ810707|pid:none) Poa pratensis mRNA for RAB1-like (... 168 2e-40
AJ518934_1(AJ518934|pid:none) Hordeum vulgare subsp. vulgare mRN... 168 2e-40
AF083256_1(AF083256|pid:none) Sporobolus stapfianus small GTP bi... 168 2e-40
BC110198_1(BC110198|pid:none) Bos taurus RAB4A, member RAS oncog... 168 2e-40
AF087861_1(AF087861|pid:none) Homo sapiens rab4b mRNA, complete ... 168 2e-40
L35845_1(L35845|pid:none) Oryza sativa small GTP-binding protein... 168 2e-40
AJ278659_1(AJ278659|pid:none) Aspergillus niger srgB gene for a ... 168 2e-40
(Q2HJI8) RecName: Full=Ras-related protein Rab-8B; &BC105330_1(... 168 2e-40
T33855(T33855)hypothetical protein D1037.4 - Caenorhabditis eleg... 168 2e-40
AJ308736_1(AJ308736|pid:none) Plasmodium falciparum mRNA for put... 168 2e-40
CR932639_1(CR932639|pid:none) Paramecium tetraurelia, Small GTPa... 168 2e-40
AB112929_1(AB112929|pid:none) Caenorhabditis elegans rab8 mRNA f... 168 2e-40
BT070553_1(BT070553|pid:none) Picea sitchensis clone WS02735_N04... 168 2e-40
BT078127_1(BT078127|pid:none) Lepeophtheirus salmonis Pacific fo... 168 3e-40
(P33723) RecName: Full=GTP-binding protein ypt1; &AL356324_15(A... 168 3e-40
EF144593_1(EF144593|pid:none) Populus trichocarpa clone WS01111_... 168 3e-40
GN080095_1(GN080095|pid:none) Sequence 698 from Patent WO2009027... 168 3e-40
(Q92928) RecName: Full=Putative Ras-related protein Rab-1C; ... 168 3e-40
BC077886_1(BC077886|pid:none) Xenopus laevis RAB14, member RAS o... 168 3e-40
GN106121_1(GN106121|pid:none) Sequence 10902 from Patent WO20090... 168 3e-40
AJ277108_1(AJ277108|pid:none) Trichoderma reesei ypt1 gene for s... 168 3e-40
AB035352_1(AB035352|pid:none) Drosophila melanogaster mRNA for D... 168 3e-40
EF576151_1(EF576151|pid:none) Oryza sativa (indica cultivar-grou... 160 3e-40
BC107443_1(BC107443|pid:none) Rattus norvegicus RAB2B, member RA... 167 3e-40
AF244545_1(AF244545|pid:none) Aspergillus awamori YptA (yptA) ge... 167 3e-40
(P22128) RecName: Full=Ras-related protein Rab-8; AltName: Full=... 167 3e-40
BT071594_1(BT071594|pid:none) Picea sitchensis clone WS02926_J12... 167 3e-40
BC054719_1(BC054719|pid:none) Mus musculus RAB2B, member RAS onc... 167 3e-40
(P59279) RecName: Full=Ras-related protein Rab-2B; &AB232586_1(... 167 3e-40
AF013572_1(AF013572|pid:none) Bombyx mori small GTP-binding prot... 167 3e-40
AK297598_1(AK297598|pid:none) Homo sapiens cDNA FLJ52970 complet... 167 3e-40
AE014297_3082(AE014297|pid:none) Drosophila melanogaster chromos... 167 3e-40
(P20790) RecName: Full=Ras-related protein Rab-8A; AltName: Full... 167 5e-40
BT077861_1(BT077861|pid:none) Lepeophtheirus salmonis Pacific fo... 167 5e-40
GM977149_1(GM977149|pid:none) Sequence 57 from Patent WO20081456... 167 5e-40
(Q559X6) RecName: Full=Ras-related protein Rab-2B; &AC116921_8(... 167 5e-40
BT076429_1(BT076429|pid:none) Caligus rogercresseyi clone crog-e... 167 5e-40
EU116937_1(EU116937|pid:none) Aiptasia pulchella small GTP-bindi... 167 5e-40
AC159407_36(AC159407|pid:none) Trypanosoma brucei chromosome 8 c... 167 5e-40
GN080135_1(GN080135|pid:none) Sequence 738 from Patent WO2009027... 167 5e-40
S01766(S01766;D39963)GTP-binding protein rab4 - rat 167 6e-40
BT076415_1(BT076415|pid:none) Caligus rogercresseyi clone crog-e... 167 6e-40
AY370774_1(AY370774|pid:none) Trypanosoma brucei strain Lister 4... 167 6e-40
EU810302_1(EU810302|pid:none) Gymnochlora stellata Ras-related s... 167 6e-40
BT077899_1(BT077899|pid:none) Lepeophtheirus salmonis Pacific fo... 167 6e-40
(P20338) RecName: Full=Ras-related protein Rab-4A; 167 6e-40
AM910992_200(AM910992|pid:none) Plasmodium knowlesi strain H chr... 166 8e-40
(Q9TVU5) RecName: Full=Ras-related protein Rab-1; AltName: Full=... 166 8e-40
GN105977_1(GN105977|pid:none) Sequence 10758 from Patent WO20090... 166 8e-40
AC140549_18(AC140549|pid:none) Medicago truncatula clone mth2-28... 166 1e-39
BC138508_1(BC138508|pid:none) Mus musculus RAB4A, member RAS onc... 166 1e-39
D12547_1(D12547|pid:none) Pisum sativum mRNA for GTP-binding pro... 166 1e-39
(P20791) RecName: Full=Ras-related protein Rab-8B; AltName: Full... 166 1e-39
AK169657_1(AK169657|pid:none) Mus musculus 2 days neonate thymus... 165 2e-39
FN357536_6(FN357536|pid:none) Schistosoma mansoni genome sequenc... 165 2e-39
CR932579_1(CR932579|pid:none) Paramecium tetraurelia, Small GTPa... 165 2e-39
(P35280) RecName: Full=Ras-related protein Rab-8A; &(P55258) Re... 165 2e-39
L48181_1(L48181|pid:none) Brassica campestris L. pekinensis ypt-... 165 2e-39
(Q5R4A3) RecName: Full=Ras-related protein Rab-8A; &CR861352_1(... 165 2e-39
S53268_1(S53268|pid:none) Homo sapiens RAS-related protein MEL (... 165 2e-39
(P34140) RecName: Full=Ras-related protein Rab-1B; 165 2e-39
I78851(I78851) GTP-binding protein MEL - mouse &S53270_1(S53270... 165 2e-39
AY892042_1(AY892042|pid:none) Synthetic construct Homo sapiens c... 165 2e-39
L12031_1(L12031|pid:none) Leishmania major V121 GTP-binding prot... 165 2e-39
CR932818_1(CR932818|pid:none) Paramecium tetraurelia, Small GTPa... 165 2e-39
AK147178_1(AK147178|pid:none) Mus musculus 17 days pregnant adul... 165 2e-39
CR933417_1(CR933417|pid:none) Paramecium tetraurelia, Small GTPa... 165 2e-39
AY324134_1(AY324134|pid:none) Babesia bovis Rab1a mRNA, complete... 165 2e-39
BT044417_1(BT044417|pid:none) Drosophila melanogaster FI09101 fu... 165 2e-39
GN106061_1(GN106061|pid:none) Sequence 10842 from Patent WO20090... 165 2e-39
BT035355_1(BT035355|pid:none) Zea mays full-length cDNA clone ZM... 165 2e-39
E34323(E34323) GTP-binding protein Rab4 - human &M28211_1(M2821... 165 2e-39
CR932630_1(CR932630|pid:none) Paramecium tetraurelia, Small GTPa... 165 2e-39
DQ311306_1(DQ311306|pid:none) Bombyx mori ras-related GTP-bindin... 165 2e-39
CR932694_1(CR932694|pid:none) Paramecium tetraurelia, Small GTPa... 164 3e-39
DQ286060_1(DQ286060|pid:none) Hydra vulgaris RAS related GTP-bin... 164 3e-39
AB170418_1(AB170418|pid:none) Macaca fascicularis brain cDNA clo... 164 3e-39
AM494964_85(AM494964|pid:none) Leishmania braziliensis chromosom... 164 3e-39
AK104346_1(AK104346|pid:none) Oryza sativa Japonica Group cDNA c... 164 3e-39
AY851657_1(AY851657|pid:none) Triticum aestivum small GTP-bindin... 164 3e-39
FN357316_32(FN357316|pid:none) Schistosoma mansoni genome sequen... 164 3e-39
GN106103_1(GN106103|pid:none) Sequence 10884 from Patent WO20090... 164 4e-39
(P36409) RecName: Full=Ras-related protein Rab-2A; 164 4e-39
GM977167_1(GM977167|pid:none) Sequence 75 from Patent WO20081456... 164 4e-39
GN106091_1(GN106091|pid:none) Sequence 10872 from Patent WO20090... 164 4e-39
S57478(S57478) GTP-binding protein GTP13 - garden pea &Z49902_1... 164 4e-39
GN106033_1(GN106033|pid:none) Sequence 10814 from Patent WO20090... 164 4e-39
CR940347_347(CR940347|pid:none) Theileria annulata strain Ankara... 164 5e-39
EF147099_1(EF147099|pid:none) Populus trichocarpa clone WS01227_... 164 5e-39
FN315276_1(FN315276|pid:none) Schistosoma japonicum isolate Anhu... 164 5e-39
CR932657_1(CR932657|pid:none) Paramecium tetraurelia, Small GTPa... 164 5e-39
EU069501_1(EU069501|pid:none) Gymnochlora stellata Rab1A1 mRNA, ... 164 5e-39
GN105821_1(GN105821|pid:none) Sequence 10602 from Patent WO20090... 164 5e-39
(Q9ZRE2) RecName: Full=Ras-related protein RABD1; AltName: Full=... 164 5e-39
GN105981_1(GN105981|pid:none) Sequence 10762 from Patent WO20090... 164 5e-39
BT070448_1(BT070448|pid:none) Picea sitchensis clone WS0272_O15 ... 163 7e-39
BT080187_1(BT080187|pid:none) Caligus clemensi clone ccle-evs-50... 163 7e-39
BT077352_1(BT077352|pid:none) Lepeophtheirus salmonis Pacific fo... 163 7e-39
CR382138_325(CR382138|pid:none) Debaryomyces hansenii strain CBS... 163 8e-39
FN357297_79(FN357297|pid:none) Schistosoma mansoni genome sequen... 163 8e-39
AC104285_6(AC104285|pid:none) Oryza sativa (japonica cultivar-gr... 163 8e-39
BC009227_1(BC009227|pid:none) Homo sapiens RAB13, member RAS onc... 163 8e-39
AB079020_1(AB079020|pid:none) Nicotiana tabacum mRNA for ras-rel... 163 8e-39
D01027_1(D01027|pid:none) Arabidopsis thaliana mRNA for small GT... 162 1e-38
AL161545_36(AL161545|pid:none) Arabidopsis thaliana DNA chromoso... 162 1e-38
GN106049_1(GN106049|pid:none) Sequence 10830 from Patent WO20090... 162 1e-38
AC125368_16(AC125368|pid:none) Medicago truncatula clone mth2-13... 162 1e-38
GM977117_1(GM977117|pid:none) Sequence 25 from Patent WO20081456... 162 1e-38
AC117265_12(AC117265|pid:none) Oryza sativa (japonica cultivar-g... 162 1e-38
CR932637_1(CR932637|pid:none) Paramecium tetraurelia, Small GTPa... 162 1e-38
B38625(B38625)GTP-binding protein ora2 - electric ray (Discopyge... 162 1e-38
EU069503_1(EU069503|pid:none) Gymnochlora stellata Rab1B mRNA, c... 162 1e-38
EF457937_1(EF457937|pid:none) Lolium temulentum GTP-binding prot... 162 1e-38

>(P36412) RecName: Full=Ras-related protein Rab-11A;
&U02925_1(U02925|pid:none)
Length = 214

Score = 332 bits (850), Expect(2) = e-112
Identities = 170/170 (100%), Positives = 170/170 (100%)
Frame = +3

Query: 162 MTSKGSQEEYDYLYKIVLIGDSGVGKSNLLSRFTRNEFSLETKSTIGVEFATRTIQTEGK 341
MTSKGSQEEYDYLYKIVLIGDSGVGKSNLLSRFTRNEFSLETKSTIGVEFATRTIQTEGK
Sbjct: 1 MTSKGSQEEYDYLYKIVLIGDSGVGKSNLLSRFTRNEFSLETKSTIGVEFATRTIQTEGK 60

Query: 342 TIKAQVWDTAGQERYRAITSAYYRGAVGALLVYDIAKQATYKSVERWILELRENADRNIE 521
TIKAQVWDTAGQERYRAITSAYYRGAVGALLVYDIAKQATYKSVERWILELRENADRNIE
Sbjct: 61 TIKAQVWDTAGQERYRAITSAYYRGAVGALLVYDIAKQATYKSVERWILELRENADRNIE 120

Query: 522 IMLVGNKSDLRHLREVSTDEAKEFSEKHKLTFIETSALDSSNVELAFQNI 671
IMLVGNKSDLRHLREVSTDEAKEFSEKHKLTFIETSALDSSNVELAFQNI
Sbjct: 121 IMLVGNKSDLRHLREVSTDEAKEFSEKHKLTFIETSALDSSNVELAFQNI 170

Score = 96.7 bits (239), Expect(2) = e-112
Identities = 45/45 (100%), Positives = 45/45 (100%)
Frame = +1

Query: 673 ILTQIYHIMSRPSHSTGPQTTIDSNTETIILPTTSEPPAAKSGCC 807
ILTQIYHIMSRPSHSTGPQTTIDSNTETIILPTTSEPPAAKSGCC
Sbjct: 170 ILTQIYHIMSRPSHSTGPQTTIDSNTETIILPTTSEPPAAKSGCC 214

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,145,962,783
Number of extensions: 19606680
Number of successful extensions: 79590
Number of sequences better than 10.0: 3937
Number of HSP's gapped: 76980
Number of HSP's successfully gapped: 4022
Length of query: 303
Length of database: 1,051,180,864
Length adjustment: 128
Effective length of query: 175
Effective length of database: 636,901,312
Effective search space: 111457729600
Effective search space used: 111457729600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.93 gvh: 0.34 alm: 0.45 top: 0.93 tms: 0.00 mit: 0.36 mip: 0.04
nuc: 0.21 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 1.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: cytoplasmic
32.0 %: nuclear
20.0 %: mitochondrial
8.0 %: vesicles of secretory system
4.0 %: cytoskeletal
4.0 %: plasma membrane

>> prediction for Contig-U14031-1 is cyt

VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0