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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U14026-1
Contig ID Contig-U14026-1
Contig update 2002.12.18
Contig sequence 
>Contig-U14026-1 (Contig-U14026-1Q) /CSM_Contig/Contig-U14026-1Q.Seq.d
CATTTTTAAATTACCAAAAGAATTAATATATAAAAAAAAAACAAAAATAA
AAAAATAAAATGTCTCACACAATCGTTTTATTACAAACCACCATGGGAAA
ATCAAGTCGTACCTTTATGGATTACGAATCTGTAAACCAAGCTATTGAAG
GTATTTGTAATATGTATGAACAAAGACTTAAACAAGAACGTCCAAATCAA
AAAAATATTACCTATGACATTTCTCAATTATTTAAATTTATAGATAGTTT
AGCCGATTTATCATGTTTGGTATACACATCTCATATCAACGCTTACACAC
CATACAACAAAGAATGGATAAAAACTAAAATCATCAACCATCTCCAAAAA
TTAGCTCAATAAACTTATGTTCAACTAATAATTATTATGAATAAATGTAA
TGTTAGAAAAAAAAAAAAAAAAAAAAAAAAATCTTTACACAATTTAACTA
TTATTTTTATTATTATTTAATTTATTGTAGCACTATCAAGTTACAAATAA
CATTGTGTGCGTGTGTGTGTGCGTGTGTTCATACATTTTGTACCCACTTT
AACTCATTGTTATTATATTATATTATATAATATATTGTAAAAAAAAAAAA
AAAATAATAAAAAAT
Gap no gap
Contig length 615
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 3980439
End point 3979824
Strand (PLUS/MINUS) MINUS
Number of clones 6
Number of EST 8
Link to clone list U14026
List of clone(s) 

est1=SSC857E,1,411
est2=AHD133F,2,416
est3=SSA313F,30,570
est4=VSF121F,42,416
est5=VSF121Z,42,229
est6=AHD133Z,139,239
est7=VSB428Z,428,616
est8=VSI669F,452,598
Translated Amino Acid sequence 
flnyqkn*yikkkqk*KNKMSHTIVLLQTTMGKSSRTFMDYESVNQAIEGICNMYEQRLK
QERPNQKNITYDISQLFKFIDSLADLSCLVYTSHINAYTPYNKEWIKTKIINHLQKLAQ*
tyvqliiimnkcnvrkkkkkkkkslhnltiifiii*fivalssyk*hcvrvcvrvfihfv
ptlthcyyiilynil*kkkknnkk
Translated Amino Acid sequence (All Frames) 
Frame A:
hf*itkrini*kknknkkikcltqsfyykppwenqvvplwitnl*tkllkvfvicmnkdl
nknvqikkilpmtflnylnl*iv*piyhvwythlistlthhttkng*klksstiskn*ln
klmfn**ll*invmlekkkkkkknlyti*llflllfnll*hyqvtnnivcvcvcvcsyil
ypl*liviilyyiiyckkkkkiikn


Frame B:
ifklpkeliykkktkikk*nvshnrfitnhhgkiksylyglrickpsy*ryl*yv*tkt*
trtskskkyyl*hfsii*iyr*fsrfimfgihisyqrlhtiqqrmdkn*nhqpspkissi
nlcstnnyye*m*c*kkkkkkkkiftqfnyyfyyyliycstiklqitlcacvcacvhtfc
thfnslllyyii*yivkkkkk**k


Frame C:
flnyqkn*yikkkqk*KNKMSHTIVLLQTTMGKSSRTFMDYESVNQAIEGICNMYEQRLK
QERPNQKNITYDISQLFKFIDSLADLSCLVYTSHINAYTPYNKEWIKTKIINHLQKLAQ*
tyvqliiimnkcnvrkkkkkkkkslhnltiifiii*fivalssyk*hcvrvcvrvfihfv
ptlthcyyiilynil*kkkknnkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U14026-1 (Contig-U14026-1Q)
/CSM_Contig/Contig-U14026-1Q.Seq.d
         (615 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U14026-1 (Contig-U14026-1Q) /CSM_Contig/Conti...   644  0.0
Contig-U11733-1 (Contig-U11733-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U14735-1 (Contig-U14735-1Q) /CSM_Contig/Conti...    36  0.043
Contig-U11762-1 (Contig-U11762-1Q) /CSM_Contig/Conti...    34  0.17
Contig-U10338-1 (Contig-U10338-1Q) /CSM_Contig/Conti...    34  0.17
Contig-U05340-1 (Contig-U05340-1Q) /CSM_Contig/Conti...    34  0.17
Contig-U01379-1 (Contig-U01379-1Q) /CSM_Contig/Conti...    34  0.17
Contig-U14168-1 (Contig-U14168-1Q) /CSM_Contig/Conti...    32  0.67
Contig-U12497-1 (Contig-U12497-1Q) /CSM_Contig/Conti...    32  0.67
Contig-U12489-1 (Contig-U12489-1Q) /CSM_Contig/Conti...    32  0.67

>Contig-U14026-1 (Contig-U14026-1Q) /CSM_Contig/Contig-U14026-1Q.Seq.d
          Length = 615

 Score =  644 bits (325), Expect = 0.0
 Identities = 339/346 (97%)
 Strand = Plus / Plus

                                                                       
Query: 61  tgtctcacacaatcgttttattacaaaccaccatgggaaaatcaagtcgtacctttatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tgtctcacacaatcgttttattacaaaccaccatgggaaaatcaagtcgtacctttatgg 120

                                                                       
Query: 121 attacgaatctgtaaaccaagctattgaaggtatttgtaatatgtatgaacaaagactta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attacgaatctgtaaaccaagctattgaaggtatttgtaatatgtatgaacaaagactta 180

                                                                       
Query: 181 aacaagaacgtccaaatcnnnnnnntattacctatgacatttctcaattatttaaattta 240
           ||||||||||||||||||       |||||||||||||||||||||||||||||||||||
Sbjct: 181 aacaagaacgtccaaatcaaaaaaatattacctatgacatttctcaattatttaaattta 240

                                                                       
Query: 241 tagatagtttagccgatttatcatgtttggtatacacatctcatatcaacgcttacacac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagatagtttagccgatttatcatgtttggtatacacatctcatatcaacgcttacacac 300

                                                                       
Query: 301 catacaacaaagaatggataaaaactaaaatcatcaaccatctccaaaaattagctcaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 catacaacaaagaatggataaaaactaaaatcatcaaccatctccaaaaattagctcaat 360

                                                         
Query: 361 aaacttatgttcaactaataattattatgaataaatgtaatgttag 406
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaacttatgttcaactaataattattatgaataaatgtaatgttag 406


 Score = 61.9 bits (31), Expect = 8e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 529 tcatacattttgtacccactttaactcattg 559
           |||||||||||||||||||||||||||||||
Sbjct: 529 tcatacattttgtacccactttaactcattg 559


 Score = 61.9 bits (31), Expect = 8e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 1  catttttaaattaccaaaagaattaatatat 31
          |||||||||||||||||||||||||||||||
Sbjct: 1  catttttaaattaccaaaagaattaatatat 31


 Score = 54.0 bits (27), Expect = 2e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 477 gtagcactatcaagttacaaataacat 503
           |||||||||||||||||||||||||||
Sbjct: 477 gtagcactatcaagttacaaataacat 503


>Contig-U11733-1 (Contig-U11733-1Q) /CSM_Contig/Contig-U11733-1Q.Seq.d
          Length = 1285

 Score = 38.2 bits (19), Expect = 0.011
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 8   aaattaccaaaagaattaa 26
           |||||||||||||||||||
Sbjct: 763 aaattaccaaaagaattaa 781


>Contig-U14735-1 (Contig-U14735-1Q) /CSM_Contig/Contig-U14735-1Q.Seq.d
          Length = 1486

 Score = 36.2 bits (18), Expect = 0.043
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 372  caactaataattattatg 389
            ||||||||||||||||||
Sbjct: 1196 caactaataattattatg 1213


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6749
Number of Sequences: 6905
Number of extensions: 6749
Number of successful extensions: 667
Number of sequences better than 10.0: 64
length of query: 615
length of database: 5,674,871
effective HSP length: 16
effective length of query: 599
effective length of database: 5,564,391
effective search space: 3333070209
effective search space used: 3333070209
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.16
Homology vs DNA 
Query= Contig-U14026-1 (Contig-U14026-1Q) /CSM_Contig/Contig-U14026-1Q.Seq.d
         (615 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...   268   0.0    7
(C93958) Dictyostelium discoideum slug cDNA, clone SSC857.        398   0.0    3
(BJ331827) Dictyostelium discoideum cDNA clone:dda37a09, 5' ...   392   0.0    3
(AU264740) Dictyostelium discoideum vegetative cDNA clone:VS...   394   0.0    2
(AU072582) Dictyostelium discoideum slug cDNA, clone SSA313.      274   e-101  2
(AU264741) Dictyostelium discoideum vegetative cDNA clone:VS...   274   2e-77  2
(AU262010) Dictyostelium discoideum vegetative cDNA clone:VS...   119   7e-33  2
(AU269059) Dictyostelium discoideum vegetative cDNA clone:VS...   119   7e-33  2
(BJ349658) Dictyostelium discoideum cDNA clone:dda37a09, 3' ...   113   8e-21  1
(FH462745) CHO_OF4946xp15r1.ab1 CHO_OF4 Nicotiana tabacum ge...    48   0.004  2
(BX629345) Zebrafish DNA sequence from clone DKEY-148A13 in ...    44   0.005  5
(BX914201) Zebrafish DNA sequence from clone DKEYP-108B3 in ...    54   0.006  1
(AC005406) Homo sapiens clone b128f11, complete sequence.          54   0.006  1
(AU269060) Dictyostelium discoideum vegetative cDNA clone:VS...    54   0.006  1
(CR385050) Zebrafish DNA sequence from clone DKEY-22I16 in l...    42   0.008  3
(AE014846) Plasmodium falciparum 3D7 chromosome 12, section ...    44   0.019  10
(BX537115) Zebrafish DNA sequence from clone CH211-207B20 in...    52   0.024  1
(AL929357) Plasmodium falciparum strain 3D7, chromosome 9; s...    52   0.024  1
(AC107032) Homo sapiens 12 BAC RP11-613M5 (Roswell Park Canc...    52   0.024  1
(AC126477) Rattus norvegicus clone CH230-43M20, WORKING DRAF...    52   0.024  1
(AC123437) Rattus norvegicus clone CH230-455K20, WORKING DRA...    52   0.024  1
(AC098099) Rattus norvegicus clone CH230-110M23, WORKING DRA...    52   0.024  1
(CT827822) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    52   0.024  1
(CT826387) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    52   0.024  1
(CT573261) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    52   0.024  1
(AC196635) Rhinolophus ferrumequinum clone VMRC7-387A16, WOR...    52   0.024  1
(AC163265) Rhinolophus ferrumequinum clone VMRC7-389N18, WOR...    52   0.024  1
(AC023961) Homo sapiens chromosome 12 clone RP11-613M5 map 1...    52   0.024  1
(DX539188) GH_MBb0051M17f GH_MBb Gossypium hirsutum genomic ...    52   0.024  1
(AG357333) Mus musculus molossinus DNA, clone:MSMg01-156K08....    52   0.024  1
(AU088184) Plasmodium falciparum 3D7 cDNA clone from Sugano ...    52   0.024  1
(AU087804) Plasmodium falciparum 3D7 cDNA clone from Sugano ...    52   0.024  1
(AU087246) Plasmodium falciparum 3D7 cDNA clone from Sugano ...    52   0.024  1
(AU086804) Plasmodium falciparum 3D7 cDNA clone from Sugano ...    52   0.024  1
(AU086790) Plasmodium falciparum 3D7 cDNA clone from Sugano ...    52   0.024  1
(AU086774) Plasmodium falciparum 3D7 cDNA clone from Sugano ...    52   0.024  1
(AU086487) Plasmodium falciparum 3D7 cDNA clone from Sugano ...    52   0.024  1
(CK413415) AUF_IpGil_05_c19 Ictalurus punctatus gill cDNA li...    52   0.024  1
(BQ739654) PfESToab48e08.y1 Plasmodium falciparum 3D7 asexua...    52   0.024  1
(BI815890) PfESToaa33h06.y1 Plasmodium falciparum 3D7 asexua...    52   0.024  1
(BI670708) PfESToaa03c10.y1 Plasmodium falciparum 3D7 asexua...    52   0.024  1
(BG929030) HNC11-1-G6.R HNC (Human Normal Cartilage) Homo sa...    52   0.024  1
(BX004772) Zebrafish DNA sequence from clone DKEY-15L1 in li...    46   0.048  2
(AC019129) Homo sapiens BAC clone RP11-559M23 from 2, comple...    44   0.052  4
(AL844506) Plasmodium falciparum chromosome  7.                    44   0.053  2
(AC184820) Canis Familiaris chromosome 21, clone XX-43D15, c...    34   0.058  2
(AC147212) Pan troglodytes BAC clone RP43-126P16 from chromo...    38   0.059  2
(AC148929) Pan troglodytes chromosome 7 clone RP43-8B5, *** ...    38   0.062  2
(AF033378) Plasmodium falciparum clone 7A11 chloroquine resi...    38   0.074  2
(G38831) 7A11 Plasmodium falciparum haploid Plasmodium falci...    38   0.080  2
(CR391924) Zebrafish DNA sequence from clone CH211-135F11 in...    48   0.093  3
(CR450687) Zebrafish DNA sequence from clone CH211-204A13 in...    50   0.094  1
(BX957285) Zebrafish DNA sequence from clone CH211-160M18 in...    50   0.094  1
(BX936330) Zebrafish DNA sequence from clone CH211-266J17 in...    50   0.094  1
(BX901957) Zebrafish DNA sequence from clone CH211-150G5 in ...    50   0.094  1
(BX324227) Zebrafish DNA sequence from clone CH211-149M17 in...    50   0.094  1
(AL928628) Zebrafish DNA sequence from clone DKEY-5G18 in li...    50   0.094  1
(BV386719) S244P6241FD9.T0 AlaskaGrayWolf Canis lupus STS ge...    50   0.094  1
(CT009682) Mouse DNA sequence from clone RP23-136H15 on chro...    50   0.094  1
(AC183669) Pan troglodytes BAC clone CH251-549L23 from chrom...    50   0.094  1
(AC146092) Pan troglodytes BAC clone RP43-48I3 from chromoso...    50   0.094  1
(AY183918) Drosophila melanogaster centromeric satellite seq...    50   0.094  1
(AL034397) Human DNA sequence from clone RP6-159A1 on chromo...    50   0.094  1
(AC213121) Homo sapiens FOSMID clone ABC9-43920300K16 from c...    50   0.094  1
(AC008977) Homo sapiens chromosome 19 clone LLNLF-150E1, com...    50   0.094  1
(AC150448) Pan troglodytes clone CH251-35E6, WORKING DRAFT S...    50   0.094  1
(AC142093) Canis familiaris clone RP81-265L22, WORKING DRAFT...    50   0.094  1
(AC098044) Rattus norvegicus clone CH230-167M23, *** SEQUENC...    50   0.094  1
(CR854991) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    50   0.094  1
(AC186251) Oryctolagus cuniculus clone LB1-191L3, WORKING DR...    50   0.094  1
(AC182341) Oryctolagus cuniculus clone LB1-320C23, WORKING D...    50   0.094  1
(AC171383) Atelerix albiventris clone LB4-330B5, WORKING DRA...    50   0.094  1
(EK334427) 1095467035281 Global-Ocean-Sampling_GS-31-01-01-1...    50   0.094  1
(EI894253) VUH1-77I1TR VUUBBa (VUH1) Vigna unguiculata genom...    50   0.094  1
(DX088763) AU_BAC022A1E01_Sp6 CHORI212 Ictalurus punctatus g...    50   0.094  1
(DX087253) AU_BAC014A2H02_Sp6 CHORI212 Ictalurus punctatus g...    50   0.094  1
(CW712417) AIAA-aac07e03.b1 Ancylostoma caninum whole genome...    50   0.094  1
(CE759304) tigr-gss-dog-17000369698819 Dog Library Canis lup...    50   0.094  1
(EH533061) FDR107-P00064-DEPE-R_L20 FDR107 Danio rerio cDNA ...    50   0.094  1
(AC162783) Danio rerio clone CH211-193C7, WORKING DRAFT SEQU...    44   0.15   6
(AC004153) Plasmodium falciparum chromosome 12 clone 3D7, **...    40   0.16   7
(EL504228) C01_1536_20.AB1 Blood stage Plasmodium falciparum...    44   0.21   2
(AC126744) Rattus norvegicus clone CH230-7H15, WORKING DRAFT...    34   0.21   2
(AL356010) Human DNA sequence from clone RP11-136B18 on chro...    44   0.22   2
(AC024487) Homo sapiens chromosome 1 clone RP11-136B18 map 1...    44   0.22   2
(CU570893) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   0.22   2
(BX248118) Zebrafish DNA sequence from clone DKEY-100H21 in ...    44   0.23   4
(BZ137215) CH230-432K20.TV CHORI-230 Segment 2 Rattus norveg...    34   0.28   2
(CT735635) Danio rerio EST, clone ZF_mu_256l07 3'.                 34   0.28   2
(EL500592) 033_PFLAB1-S-PLATE15B.AB1 Blood stage Plasmodium ...    44   0.28   2
(AE014839) Plasmodium falciparum 3D7 chromosome 11 section 4...    44   0.30   6
(AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4...    38   0.30   6
(AX381919) Sequence 857 from Patent WO0212280.                     44   0.31   2
(AC193781) Solanum lycopersicum chromosome 10 clone C10SLe00...    42   0.31   5
(AF120717) Saccharomyces kluyveri tRNA-Val gene, complete se...    46   0.34   2
(AQ314975) RPCI11-95L1.TV RPCI-11 Homo sapiens genomic clone...    40   0.35   2
(AP009359) Solanum lycopersicum genomic DNA, chromosome 8, c...    40   0.37   3
(CU855822) Zebrafish DNA sequence from clone DKEYP-109A10 in...    48   0.37   1
(CU571168) Zebrafish DNA sequence from clone CH73-34B5 in li...    48   0.37   1
(CU467651) Zebrafish DNA sequence from clone DKEY-250D21 in ...    48   0.37   1

>(AC116986) Dictyostelium discoideum chromosome 2 map 2234041-2567370
              strain AX4, complete sequence.
          Length = 333321

 Score =  268 bits (135), Expect(7) = 0.0
 Identities = 135/135 (100%)
 Strand = Plus / Plus


Query: 272    atacacatctcatatcaacgcttacacaccatacaacaaagaatggataaaaactaaaat 331
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104501 atacacatctcatatcaacgcttacacaccatacaacaaagaatggataaaaactaaaat 104560


Query: 332    catcaaccatctccaaaaattagctcaataaacttatgttcaactaataattattatgaa 391
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104561 catcaaccatctccaaaaattagctcaataaacttatgttcaactaataattattatgaa 104620


Query: 392    taaatgtaatgttag 406
              |||||||||||||||
Sbjct: 104621 taaatgtaatgttag 104635

 Score =  180 bits (91), Expect(7) = 0.0
 Identities = 91/91 (100%)
 Strand = Plus / Plus


Query: 62     gtctcacacaatcgttttattacaaaccaccatgggaaaatcaagtcgtacctttatgga 121
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104011 gtctcacacaatcgttttattacaaaccaccatgggaaaatcaagtcgtacctttatgga 104070


Query: 122    ttacgaatctgtaaaccaagctattgaaggt 152
              |||||||||||||||||||||||||||||||
Sbjct: 104071 ttacgaatctgtaaaccaagctattgaaggt 104101

 Score =  131 bits (66), Expect(7) = 0.0
 Identities = 66/66 (100%)
 Strand = Plus / Plus


Query: 206    tattacctatgacatttctcaattatttaaatttatagatagtttagccgatttatcatg 265
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104280 tattacctatgacatttctcaattatttaaatttatagatagtttagccgatttatcatg 104339


Query: 266    tttggt 271
              ||||||
Sbjct: 104340 tttggt 104345

 Score =  119 bits (60), Expect(7) = 0.0
 Identities = 60/60 (100%)
 Strand = Plus / Plus


Query: 529    tcatacattttgtacccactttaactcattgttattatattatattatataatatattgt 588
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104758 tcatacattttgtacccactttaactcattgttattatattatattatataatatattgt 104817

 Score = 99.6 bits (50), Expect(7) = 0.0
 Identities = 50/50 (100%)
 Strand = Plus / Plus


Query: 149    aggtatttgtaatatgtatgaacaaagacttaaacaagaacgtccaaatc 198
              ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104223 aggtatttgtaatatgtatgaacaaagacttaaacaagaacgtccaaatc 104272

 Score = 61.9 bits (31), Expect(7) = 0.0
 Identities = 31/31 (100%)
 Strand = Plus / Plus


Query: 1      catttttaaattaccaaaagaattaatatat 31
              |||||||||||||||||||||||||||||||
Sbjct: 103789 catttttaaattaccaaaagaattaatatat 103819

 Score = 54.0 bits (27), Expect(7) = 0.0
 Identities = 27/27 (100%)
 Strand = Plus / Plus


Query: 477    gtagcactatcaagttacaaataacat 503
              |||||||||||||||||||||||||||
Sbjct: 104706 gtagcactatcaagttacaaataacat 104732

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 556,930,901
Number of extensions: 38419605
Number of successful extensions: 3684727
Number of sequences better than 10.0: 2444
Length of query: 615
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 592
Effective length of database: 93,106,754,628
Effective search space: 55119198739776
Effective search space used: 55119198739776
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 9
Homology vs Protein 
Query= Contig-U14026-1 (Contig-U14026-1Q) /CSM_Contig/Contig-U14026-1Q.Seq.d
         (615 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT082502_1(BT082502|pid:none) Anoplopoma fimbria clone afim-evh-...   127   3e-28
CP001329_368(CP001329|pid:none) Micromonas sp. RCC299 chromosome...   127   3e-28
(Q98874) RecName: Full=Enhancer of rudimentary homolog;  &AL9292...   127   3e-28
EF084059_1(EF084059|pid:none) Picea sitchensis clone WS02713_C13...   127   3e-28
BT081071_1(BT081071|pid:none) Caligus clemensi clone ccle-evs-51...   124   2e-27
BT080450_1(BT080450|pid:none) Caligus clemensi clone ccle-evs-50...   124   2e-27
BC071431_1(BC071431|pid:none) Danio rerio enhancer of rudimentar...   123   4e-27
(Q96319) RecName: Full=Enhancer of rudimentary homolog;  &AK1175...   123   5e-27
EU959088_1(EU959088|pid:none) Zea mays clone 210346 enhancer of ...   123   5e-27
BT080793_1(BT080793|pid:none) Caligus clemensi clone ccle-evs-50...   123   5e-27
(Q94554) RecName: Full=Protein enhancer of rudimentary;  &A58158...   121   1e-26
BT076156_1(BT076156|pid:none) Caligus rogercresseyi clone crog-e...   121   2e-26
AJ004899_1(AJ004899|pid:none) Glycine max mRNA for rudimentary e...   120   2e-26
BT068211_1(BT068211|pid:none) Zea mays full-length cDNA clone ZM...   120   2e-26
(Q24337) RecName: Full=Protein enhancer of rudimentary;  &AE0142...   120   3e-26
BT076837_1(BT076837|pid:none) Caligus rogercresseyi clone crog-e...   120   4e-26
AC143339_23(AC143339|pid:none) Medicago truncatula clone mth2-20...   117   3e-25
AK340146_1(AK340146|pid:none) Acyrthosiphon pisum ACYPI000042 mR...   115   1e-24
AL606594_9(AL606594|pid:none) Oryza sativa genomic DNA, chromoso...   111   1e-23
EU961876_1(EU961876|pid:none) Zea mays clone 238818 unknown mRNA.     111   2e-23
FN357887_4(FN357887|pid:none) Schistosoma mansoni genome sequenc...   110   3e-23
AY813046_1(AY813046|pid:none) Schistosoma japonicum SJCHGC05350 ...   110   4e-23
AK018885_1(AK018885|pid:none) Mus musculus adult male testis cDN...    99   7e-20
(Q22640) RecName: Full=Enhancer of rudimentary homolog;  &T25069...    98   2e-19
BC091713_1(BC091713|pid:none) Xenopus laevis hypothetical protei...    96   1e-18
AL365234_8(AL365234|pid:none) Arabidopsis thaliana DNA chromosom...    91   2e-17
AK006080_1(AK006080|pid:none) Mus musculus adult male testis cDN...    91   2e-17
AE014185_367(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    84   3e-15
T21807(T21807)hypothetical protein F35G12.11 - Caenorhabditis el...    77   4e-13
Z46242_12(Z46242|pid:none) Caenorhabditis elegans Cosmid F35G12,...    77   4e-13
AY176327_85(AY176327|pid:none) Staphylococcus phage K, complete ...    33   6.4
AY954969_64(AY954969|pid:none) Bacteriophage G1, complete genome.      33   6.4
AM412317_3311(AM412317|pid:none) Clostridium botulinum A str. AT...    33   8.4

>BT082502_1(BT082502|pid:none) Anoplopoma fimbria clone
           afim-evh-511-076 Enhancer of rudimentary homolog
           putative mRNA, complete cds.
          Length = 104

 Score =  127 bits (319), Expect = 3e-28
 Identities = 60/100 (60%), Positives = 73/100 (73%)
 Frame = +3

Query: 60  MSHTIVLLQTTMGKSSRTFMDYESVNQAIEGICNMYEQRLKQERPNQKNITYDISQLFKF 239
           MSHTI+L+Q T     RT+ DYESVN+ +EG+C MYE+ LK+  PN  +ITYDISQLF F
Sbjct: 1   MSHTILLVQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDF 60

Query: 240 IDSLADLSCLVYTSHINAYTPYNKEWIKTKIINHLQKLAQ 359
           ID LADLSCLVY +    Y PYNK+WIK KI   L++ AQ
Sbjct: 61  IDDLADLSCLVYRADTQTYQPYNKDWIKEKIYVLLRRQAQ 100

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 691,550,161
Number of extensions: 10422595
Number of successful extensions: 24701
Number of sequences better than 10.0: 33
Number of HSP's gapped: 24558
Number of HSP's successfully gapped: 33
Length of query: 205
Length of database: 1,051,180,864
Length adjustment: 123
Effective length of query: 82
Effective length of database: 653,084,107
Effective search space: 53552896774
Effective search space used: 53552896774
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.89  gvh: 0.44  alm: 0.43  top: 0.30  tms: 0.00  mit: 0.40  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 20.0 %: extracellular, including cell wall
	 20.0 %: mitochondrial
	 16.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for Contig-U14026-1 is cyt
VS (DIR, S) 3
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0