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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U14001-1
Contig ID Contig-U14001-1
Contig update 2002.12.18
Contig sequence 
>Contig-U14001-1 (Contig-U14001-1Q) /CSM_Contig/Contig-U14001-1Q.Seq.d
ATACCTTGAACTTTTACCNCATGTTACCTAATTAATCCTGCCCTTAAATA
TAATAATTGGTTCAGGATTAGCTGAACTGGTTAAATAATATTTGAATATC
TTCATCAACGGTGTTCTCATATTATAATTCATTTCTTTAATAATATCTTT
AATTGCATCTTCAAATGATGGCATTAATTCATTTGGTGAAGAAATANAAC
GACCTGATAATTTTTGATTAAAATCTGTTAAATGATCAATCCTAACTTCA
ATATAATGCCATCGGTAAATTATAATGTTGTCTTAATTGTTCTTTATATA
TAAATACATTATCTTGATCCTTCCATTCATTTATAAATCTTTTAAATAAA
TCTCGAACGCTTGTATCTTCAACGAATCCATTGTTTTTTTTAAATCCACC
TTTACCTCCACCACCACTAACTGTTACATTTCCTTCATCAAATCCCGAAC
ATTCCTACATATATATATANATNTTATT
Gap no gap
Contig length 478
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 2097841
End point 2098268
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 2
Link to clone list U14001
List of clone(s) 

est1=AHA834Z,1,479
est2=AHA381Z,39,470
Translated Amino Acid sequence 
tlnfyxmlpn*scp*i**lvqd*lnwlnni*issstvfsyynsfl**yl*lhlqmmalih
lvkkxndliifd*nllndqs*lqynaigkl*cclncslyintls*SFHSFINLLNKSRTL
VSSTNPLFFLNPPLPPPPLTVTFPSSNPEHSYIYIXXL
Translated Amino Acid sequence (All Frames) 
Frame A:
ip*tftxcylinpalkynnwfris*tg*iifeylhqrcshiiihffnnifncifk*wh*f
iw*rnxtt**flikic*minpnfnimpsvnynvvlivlyi*ihyldpsihl*if*inler
lylqrihcff*ihlylhhh*llhflhqipniptyiyxxy


Frame B:
ylellphvt*lilplniiigsglaelvk*ylnifingvlil*fisliisliassndgins
fgeeixrpdnf*lksvk*siltsi*chr*iimls*lffiykyiililpfiyksfk*isna
cifnesivffkstftstttncyisfiksrtflhiyixxi


Frame C:
tlnfyxmlpn*scp*i**lvqd*lnwlnni*issstvfsyynsfl**yl*lhlqmmalih
lvkkxndliifd*nllndqs*lqynaigkl*cclncslyintls*SFHSFINLLNKSRTL
VSSTNPLFFLNPPLPPPPLTVTFPSSNPEHSYIYIXXL
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U14001-1 (Contig-U14001-1Q)
/CSM_Contig/Contig-U14001-1Q.Seq.d
         (478 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U14001-1 (Contig-U14001-1Q) /CSM_Contig/Conti...   848  0.0
Contig-U04373-1 (Contig-U04373-1Q) /CSM_Contig/Conti...    38  0.008
Contig-U14620-1 (Contig-U14620-1Q) /CSM_Contig/Conti...    36  0.033
Contig-U12775-1 (Contig-U12775-1Q) /CSM_Contig/Conti...    36  0.033
Contig-U06430-1 (Contig-U06430-1Q) /CSM_Contig/Conti...    36  0.033
Contig-U00143-1 (Contig-U00143-1Q) /CSM_Contig/Conti...    36  0.033
Contig-U14691-1 (Contig-U14691-1Q) /CSM_Contig/Conti...    34  0.13
Contig-U14135-1 (Contig-U14135-1Q) /CSM_Contig/Conti...    34  0.13
Contig-U12436-1 (Contig-U12436-1Q) /CSM_Contig/Conti...    34  0.13
Contig-U12272-1 (Contig-U12272-1Q) /CSM_Contig/Conti...    34  0.13

>Contig-U14001-1 (Contig-U14001-1Q) /CSM_Contig/Contig-U14001-1Q.Seq.d
          Length = 478

 Score =  848 bits (428), Expect = 0.0
 Identities = 450/458 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataccttgaacttttaccncatgttacctaattaatcctgcccttaaatataataattgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ataccttgaacttttaccncatgttacctaattaatcctgcccttaaatataataattgg 60

                                                                       
Query: 61  ttcaggattagctgaactggttaaataatatttgaatatcttcatcaacggtgttctcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ttcaggattagctgaactggttaaataatatttgaatatcttcatcaacggtgttctcat 120

                                                                       
Query: 121 attataattcatttctttaataatatctttaattgcatcttcaaatgatggcattaattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attataattcatttctttaataatatctttaattgcatcttcaaatgatggcattaattc 180

                                                                       
Query: 181 atttggtgaagaaatanaacgacctgataatttttgattaaaatctgttaaatgatcaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atttggtgaagaaatanaacgacctgataatttttgattaaaatctgttaaatgatcaat 240

                                                                       
Query: 241 cctaacttcaatataatgccatcggtaaattataatgttgtcttaattgttctttatata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cctaacttcaatataatgccatcggtaaattataatgttgtcttaattgttctttatata 300

                                                                       
Query: 301 taaatacattatcttgatccttccattcatttataaatcttttaaataaatctcgaacgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 taaatacattatcttgatccttccattcatttataaatcttttaaataaatctcgaacgc 360

                                                                       
Query: 361 ttgtatcttcaacgaatccattgnnnnnnnnaaatccacctttacctccaccaccactaa 420
           |||||||||||||||||||||||        |||||||||||||||||||||||||||||
Sbjct: 361 ttgtatcttcaacgaatccattgttttttttaaatccacctttacctccaccaccactaa 420

                                                 
Query: 421 ctgttacatttccttcatcaaatcccgaacattcctac 458
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ctgttacatttccttcatcaaatcccgaacattcctac 458


>Contig-U04373-1 (Contig-U04373-1Q) /CSM_Contig/Contig-U04373-1Q.Seq.d
          Length = 891

 Score = 38.2 bits (19), Expect = 0.008
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 136 tttaataatatctttaatt 154
           |||||||||||||||||||
Sbjct: 138 tttaataatatctttaatt 156


>Contig-U14620-1 (Contig-U14620-1Q) /CSM_Contig/Contig-U14620-1Q.Seq.d
          Length = 146

 Score = 36.2 bits (18), Expect = 0.033
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 284 taattgttctttatatataaat 305
           |||||||| |||||||||||||
Sbjct: 15  taattgttttttatatataaat 36


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8770
Number of Sequences: 6905
Number of extensions: 8770
Number of successful extensions: 1040
Number of sequences better than 10.0: 355
length of query: 478
length of database: 5,674,871
effective HSP length: 16
effective length of query: 462
effective length of database: 5,564,391
effective search space: 2570748642
effective search space used: 2570748642
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.12.16
Homology vs DNA 
Query= Contig-U14001-1 (Contig-U14001-1Q) /CSM_Contig/Contig-U14001-1Q.Seq.d
         (478 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ348130) Dictyostelium discoideum cDNA clone:dda32d10, 3' ...   392   0.0    5
(BJ347963) Dictyostelium discoideum cDNA clone:dda31b21, 3' ...   238   e-164  5
(AE014837) Plasmodium falciparum 3D7 chromosome 11 section 2...    36   0.001  9
(AC006279) Plasmodium falciparum chromosome 12 clone 3D7, **...    36   0.009  9
(EU004203) Saccharomyces cerevisiae YJM789 mitochondrion, co...    32   0.009  8
(AE014852) Plasmodium falciparum 3D7 chromosome 12, section ...    36   0.012  9
(AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s...    36   0.018  9
(AR584244) Sequence 1 from patent US 6797466.                      38   0.030  12
(AR271569) Sequence 1 from patent US 6503729.                      38   0.030  12
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    34   0.061  9
(AJ011856) Saccharomyces cerevisiae complete mitochondrial g...    36   0.061  7
(AE014840) Plasmodium falciparum 3D7 chromosome 11 section 5...    32   0.11   7
(AL034557) Plasmodium falciparum MAL4P1.                           34   0.16   7
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    36   0.16   8
(AL929356) Plasmodium falciparum strain 3D7, chromosome 9; s...    34   0.16   9
(AL844509) Plasmodium falciparum chromosome 13.                    36   0.17   10
(CR762465) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    36   0.19   6
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    36   0.19   11
(AZ525816) 248PbE04 Pb MBN #21 Plasmodium berghei genomic 3'...    34   0.28   3
(EJ119575) 1092343366449 Global-Ocean-Sampling_GS-27-01-01-1...    48   0.29   1
(AE014848) Plasmodium falciparum 3D7 chromosome 12, section ...    44   0.31   8
(AE008639) Rickettsia conorii str. Malish 7, section 71 of 1...    44   0.31   3
(AL844506) Plasmodium falciparum chromosome  7.                    34   0.39   8
(AL109814) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    36   0.43   5
(DQ870926) Bombus ignitus mitochondrion, complete genome.          32   0.45   6
(DJ025875) Genome-wide DNA marker of Saccharomyces cerevisiae.     34   0.55   2
(AM461349) Vitis vinifera contig VV78X244708.13, whole genom...    40   0.56   2
(AC196278) Zea mays chromosome 4 clone CH201-11E4; ZMMBBc001...    34   0.61   2
(AC197251) Zea mays chromosome 3 clone CH201-269G12; ZMMBBc0...    34   0.61   2
(Z48618) S.cerevisiae genes for RAD54, ACE1(CUP2), PMR1, RCK...    34   0.67   2
(AC113610) Homo sapiens BAC clone RP11-373H2 from 2, complet...    38   0.69   5
(AE014827) Plasmodium falciparum 3D7 chromosome 14 section 1...    32   0.75   9
(Z72673) S.cerevisiae chromosome VII reading frame ORF YGL151w.    34   0.75   2
(DQ331576) Synthetic construct Saccharomyces cerevisiae clon...    34   0.75   2
(CS559482) Sequence 69 from Patent WO2006032708.                   34   0.75   2
(AR528077) Sequence 380 from patent US 6723837.                    34   0.75   2
(DY268874) IC0AAA25BF04RM1 CitNFL Citrus clementina cDNA 5',...    36   0.75   2
(AC044905) Homo sapiens chromosome 2 clone RP11-700D19 map 2...    44   0.76   4
(AX830086) Sequence 806 from Patent WO03072602.                    34   0.77   2
(AX819056) Sequence 806 from Patent EP1338608.                     34   0.77   2
(AX596304) Sequence 1958 from Patent EP1258494.                    34   0.77   2
(DJ209331) Method for identification of useful proteins deri...    34   0.79   2
(AC168516) Strongylocentrotus purpuratus clone R3-3108K3, WO...    42   0.86   2
(AL583857) Human DNA sequence from clone RP11-114O17 on chro...    36   0.88   4
(AC005140) Plasmodium falciparum chromosome 12 clone 3D7, **...    36   0.94   8
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6...    36   0.95   7
(EF625817) Carica papaya clone MSY BAC PH41F24 complete sequ...    46   1.1    1
(AM778098) Carica papaya Y chromosome sequence, clone PH 57B23.    46   1.1    1
(AM778096) Carica papaya Y chromosome sequence, clone PH 89M06.    46   1.1    1
(AM778094) Carica papaya Y chromosome sequence, clone PH 52H15.    46   1.1    1
(AF097152) Stolas pictilis 12S small subunit ribosomal RNA g...    46   1.1    1
(AC106475) Rattus norvegicus clone CH230-160H18, WORKING DRA...    46   1.1    1
(CU467724) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.1    1
(AZ677967) ENTHJ38TF Entamoeba histolytica Sheared DNA Entam...    46   1.1    1
(CZ599718) OM__Ba0073O10.r OM__Ba Oryza minuta genomic clone...    46   1.1    1
(FE341790) CAOF3222.rev CAOF_Daphnia_pulex_Log50_Library_12 ...    46   1.1    1
(CP000939) Clostridium botulinum B1 str. Okra, complete genome.    34   1.2    14
(CT626083) Danio rerio EST, clone ZF_mu_98o10 3'.                  34   1.2    2
(EA102813) Sequence 196 from patent US 7195870.                    32   1.4    3
(AX344871) Sequence 296 from Patent WO0200927.                     32   1.4    3
(AX323802) Sequence 290 from Patent WO0192565.                     32   1.4    3
(AX278033) Sequence 196 from Patent WO0177375.                     32   1.4    3
(AM457828) Vitis vinifera contig VV78X195749.3, whole genome...    32   1.4    4
(CP000683) Rickettsia massiliae MTU5, complete genome.             44   1.5    11
(CT583723) Zebrafish DNA sequence from clone DKEY-33B17 in l...    32   1.7    6
(AL035476) Plasmodium falciparum MAL4P3.                           38   1.7    8
(AX344550) Sequence 1 from Patent WO0200932.                       36   1.7    8
(EJ113823) 1092343249053 Global-Ocean-Sampling_GS-27-01-01-1...    36   1.7    2
(CT371137) Sus scrofa genomic clone CH242-483D21, genomic su...    34   1.7    2
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         32   1.7    8
(ER588313) 1093016185133 Global-Ocean-Sampling_GS-36-01-01-2...    42   1.9    2
(AE014839) Plasmodium falciparum 3D7 chromosome 11 section 4...    36   1.9    9
(AE015927) Clostridium tetani E88, complete genome.                32   1.9    15
(AC005504) Plasmodium falciparum chromosome 12, *** SEQUENCI...    30   2.0    8
(AC215861) Zea mays chromosome 6 clone CH201-325E12; ZMMBBc0...    32   2.2    2
(AC117235) Mus musculus BAC clone RP23-415F18 from 17, compl...    34   2.2    2
(AC215283) Zea mays chromosome 6 clone CH201-163P5; ZMMBBc01...    32   2.2    2
(AC209385) Zea mays chromosome 5 clone CH201-8I18; ZMMBBc000...    32   2.2    2
(AC224459) Bos taurus clone CH240-484B18, WORKING DRAFT SEQU...    32   2.2    2
(AC205604) Zea mays chromosome 2 clone CH201-522C10; ZMMBBc0...    32   2.2    2
(AC213690) Zea mays chromosome 2 clone CH201-139D20; ZMMBBc0...    32   2.2    2
(AC211866) Zea mays chromosome 10 clone CH201-182H21; ZMMBBc...    32   2.2    2
(AC219844) Bos taurus clone CH240-320K7, WORKING DRAFT SEQUE...    32   2.3    2
(AC215797) Zea mays chromosome 6 clone CH201-484B11; ZMMBBc0...    32   2.3    2
(AC159065) Bos taurus clone CH240-52H7, WORKING DRAFT SEQUEN...    42   2.3    3
(DQ927304) Tetrahymena paravorax strain RP mitochondrion, co...    34   2.3    5
(AC104139) Mus musculus BAC clone RP24-378M10 from chromosom...    34   2.3    2
(AM438481) Vitis vinifera contig VV78X178006.8, whole genome...    42   2.3    2
(AC177879) Zea mays chromosome 2 clone ZMMBBb-512B3; ZMMBBb0...    34   2.3    2
(AE014825) Plasmodium falciparum 3D7 chromosome 14 section 1...    34   2.5    8
(AL844507) Plasmodium falciparum chromosome 8.                     38   2.7    5
(CW018780) ZMMBLc0012D02.f ZMMBLc Zea mays genomic clone ZMM...    32   3.0    2
(CW019408) ZMMBLc0013A15.f ZMMBLc Zea mays genomic clone ZMM...    32   3.0    2
(CC773256) CH240_12L4.TV CHORI-240 Bos taurus genomic clone ...    32   3.0    2
(CC116255) NDL.45O4.T7 Notre Dame Liverpool Aedes aegypti ge...    32   3.0    2
(BZ646405) OGANL12TC ZM_0.7_1.5_KB Zea mays genomic clone ZM...    32   3.0    2
(CQ665548) Sequence 10474 from Patent WO02070737.                  36   3.2    2
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    32   3.4    13
(EI343905) GM_WBc0088N17.r GM_WBc Glycine max genomic clone ...    30   3.9    3
(AC116918) Dictyostelium discoideum chromosome 2 map 6143698...    32   4.4    5

>(BJ348130) Dictyostelium discoideum cDNA clone:dda32d10, 3' end,
           single read.
          Length = 480

 Score =  392 bits (198), Expect(5) = 0.0
 Identities = 201/201 (100%)
 Strand = Plus / Minus


Query: 54  taattggttcaggattagctgaactggttaaataatatttgaatatcttcatcaacggtg 113
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 taattggttcaggattagctgaactggttaaataatatttgaatatcttcatcaacggtg 369


Query: 114 ttctcatattataattcatttctttaataatatctttaattgcatcttcaaatgatggca 173
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ttctcatattataattcatttctttaataatatctttaattgcatcttcaaatgatggca 309


Query: 174 ttaattcatttggtgaagaaatanaacgacctgataatttttgattaaaatctgttaaat 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ttaattcatttggtgaagaaatanaacgacctgataatttttgattaaaatctgttaaat 249


Query: 234 gatcaatcctaacttcaatat 254
           |||||||||||||||||||||
Sbjct: 248 gatcaatcctaacttcaatat 228

 Score =  248 bits (125), Expect(5) = 0.0
 Identities = 127/128 (99%)
 Strand = Plus / Minus


Query: 256 atgccatcggtaaattataatgttgtcttaattgttctttatatataaatacattatctt 315
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 225 atgccatcggtaaattataatgttgtcttaattgttctttatatataaatacattatcnt 166


Query: 316 gatccttccattcatttataaatcttttaaataaatctcgaacgcttgtatcttcaacga 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 gatccttccattcatttataaatcttttaaataaatctcgaacgcttgtatcttcaacga 106


Query: 376 atccattg 383
           ||||||||
Sbjct: 105 atccattg 98

 Score =  107 bits (54), Expect(5) = 0.0
 Identities = 60/60 (100%)
 Strand = Plus / Minus


Query: 419 aactgttacatttccttcatcaaatcccgaacattcctacatatatatatanatnttatt 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aactgttacatttccttcatcaaatcccgaacattcctacatatatatatanatnttatt 2

 Score = 95.6 bits (48), Expect(5) = 0.0
 Identities = 51/51 (100%)
 Strand = Plus / Minus


Query: 1   ataccttgaacttttaccncatgttacctaattaatcctgcccttaaatat 51
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ataccttgaacttttaccncatgttacctaattaatcctgcccttaaatat 430

 Score = 44.1 bits (22), Expect(5) = 0.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus


Query: 392 aaatccacctttacctccaccacca 416
           |||||||||||||||||| ||||||
Sbjct: 89  aaatccacctttacctccnccacca 65

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 660,740,793
Number of extensions: 72353497
Number of successful extensions: 4323606
Number of sequences better than 10.0: 235
Length of query: 478
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 455
Effective length of database: 93,106,754,628
Effective search space: 42363573355740
Effective search space used: 42363573355740
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7. 9
Homology vs Protein 
Query= Contig-U14001-1 (Contig-U14001-1Q) /CSM_Contig/Contig-U14001-1Q.Seq.d
         (478 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FM992689_566(FM992689|pid:none) Candida dubliniensis CD36 chromo...    44   7e-05
CP000499_475(CP000499|pid:none) Pichia stipitis CBS 6054 chromos...    42   3e-04
AP007162_308(AP007162|pid:none) Aspergillus oryzae RIB40 genomic...    36   0.002
CR382138_89(CR382138|pid:none) Debaryomyces hansenii strain CBS7...    41   0.016
FN392320_967(FN392320|pid:none) Pichia pastoris GS115 chromosome...    40   0.027
AK220442_1(AK220442|pid:none) Mus musculus mRNA for mKIAA4003 pr...    36   0.51
EU016647_56(EU016647|pid:none) Uncultured Group I marine crenarc...    28   1.2
EU016599_10(EU016599|pid:none) Uncultured Group I marine crenarc...    28   1.2
(P30664) RecName: Full=DNA replication licensing factor mcm4-B; ...    33   3.3
(Q6GL41) RecName: Full=DNA replication licensing factor mcm4; Al...    33   3.3
AK022899_1(AK022899|pid:none) Homo sapiens cDNA FLJ12837 fis, cl...    33   4.3
AK089999_1(AK089999|pid:none) Mus musculus brain CRL-1443 BC3H1 ...    33   4.3
X74794_1(X74794|pid:none) H.sapiens P1-Cdc21 mRNA.                     33   4.3
T47223(T47223) replication licensing factor MCM4 [validated] - A...    33   4.3
AK151499_1(AK151499|pid:none) Mus musculus bone marrow macrophag...    33   4.3
AY588245_1(AY588245|pid:none) Homo sapiens MCM4 minichromosome m...    33   4.3
BC013094_1(BC013094|pid:none) Mus musculus minichromosome mainte...    33   4.3
AK296913_1(AK296913|pid:none) Homo sapiens cDNA FLJ54365 complet...    33   4.3
(P33991) RecName: Full=DNA replication licensing factor MCM4; Al...    33   4.3
CP001398_2025(CP001398|pid:none) Thermococcus gammatolerans EJ3,...    29   5.1
(P34647) RecName: Full=DNA replication licensing factor mcm-6;  ...    32   5.6
AM269955_78(AM269955|pid:none) Aspergillus niger contig An01c008...    32   9.5
AE007918_1(AE007918|pid:none) Agrobacterium tumefaciens str. C58...    32   9.5
AE007872_487(AE007872|pid:none) Agrobacterium tumefaciens str. C...    32   9.5

>FM992689_566(FM992689|pid:none) Candida dubliniensis CD36
           chromosome 2, complete sequence.
          Length = 728

 Score = 43.9 bits (102), Expect(2) = 7e-05
 Identities = 18/45 (40%), Positives = 30/45 (66%)
 Frame = -2

Query: 258 HYIEVRIDHLTDFNQKLSGRXISSPNELMPSFEDAIKDIIKEMNY 124
           ++++V  DHL  FN++L+ +    P E++P FE+AI DI K + Y
Sbjct: 59  YFLKVEADHLISFNEELNKKLSDDPAEMIPLFENAITDIAKRIAY 103

 Score = 24.3 bits (51), Expect(2) = 7e-05
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = -1

Query: 346 FKRFINEWKDQDNVFIYKEQLRQH 275
           F+ FI E++  D+ FIY++QLR++
Sbjct: 31  FRSFILEYRI-DSQFIYRDQLREN 53

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 570,600,736
Number of extensions: 8766542
Number of successful extensions: 14915
Number of sequences better than 10.0: 24
Number of HSP's gapped: 14912
Number of HSP's successfully gapped: 30
Length of query: 159
Length of database: 1,051,180,864
Length adjustment: 118
Effective length of query: 41
Effective length of database: 669,266,902
Effective search space: 27439942982
Effective search space used: 27439942982
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.73  gvh: 0.46  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.45  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: mitochondrial
	 28.0 %: nuclear
	 12.0 %: cytoplasmic
	  4.0 %: cytoskeletal

>> prediction for Contig-U14001-1 is mit
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 2
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0