Contig-U00618-1 |
Contig ID |
Contig-U00618-1 |
Contig update |
2001. 8.29 |
Contig sequence |
|
Gap |
no gap |
Contig length |
599 |
Chromosome number (1..6, M) |
2 |
Chromosome length |
8467578 |
Start point |
8024188 |
End point |
8024787 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
1 |
Number of EST |
1 |
Link to clone list |
U00618 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.21 |
Homology vs CSM-cDNA |
|
dna update |
2009. 4.18 |
Homology vs DNA |
Query= Contig-U00618-1 (Contig-U00618-1Q) /CSM_Contig/Contig-U00618-1Q.Seq.d (599 letters)
Database: ddbj_A 102,105,510 sequences; 101,790,757,118 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 906 0.0 2 (BJ328492) Dictyostelium discoideum cDNA clone:dda28k10, 5' ... 906 0.0 2 (CP000770) Candidatus Sulcia muelleri GWSS, complete genome. 40 0.39 7 (AM448680) Vitis vinifera, whole genome shotgun sequence, co... 36 0.77 3 (AC125576) Rattus norvegicus 18 BAC CH230-9F9 (Children's Ho... 42 1.2 4 (CR392341) Zebrafish DNA sequence from clone CH211-222E20 in... 46 1.5 1 (FB062768) Sequence 249676 from Patent WO2007106407. 46 1.5 1 (EA030032) Sequence 17 from patent US 7141418. 46 1.5 1 (DL135063) STREPTOCOCCUS PNEUMONIAE PROTEINS AND NUCLEIC ACIDS. 46 1.5 1 (DL133035) STREPTOCOCCUS PNEUMONIAE PROTEINS AND NUCLEIC ACIDS. 46 1.5 1 (DL072540) Streptococcus pneumoniae Polynucleotides and Sequ... 46 1.5 1 (CS814284) Sequence 1193 from Patent WO2007106407. 46 1.5 1 (CS272295) Sequence 4980 from Patent EP1630230. 46 1.5 1 (CS268264) Sequence 931 from Patent EP1630230. 46 1.5 1 (CQ788926) Sequence 17 from Patent EP1400592. 46 1.5 1 (BD003697) Polynucleotide of Streptococcus pneumoniae and se... 46 1.5 1 (AX571761) Sequence 4980 from Patent WO02077021. 46 1.5 1 (AX567730) Sequence 931 from Patent WO02077021. 46 1.5 1 (AR218785) Sequence 17 from patent US 6420135. 46 1.5 1 (AC185819) Bos taurus clone RP42-179N18, WORKING DRAFT SEQUE... 46 1.5 1 (AC175518) Bos taurus clone CH240-209I21, WORKING DRAFT SEQU... 46 1.5 1 (AC168887) Bos taurus clone CH240-221A24, WORKING DRAFT SEQU... 46 1.5 1 (FM211187) Streptococcus pneumoniae ATCC 700669 complete gen... 46 1.5 1 (EF488098) Streptococcus pneumoniae strain Hu15 PncA, PncB, ... 46 1.5 1 (EF488097) Streptococcus pneumoniae strain F4 SpiB, SpiA, Pn... 46 1.5 1 (EF488096) Streptococcus pneumoniae strain 632 SpiB gene, pa... 46 1.5 1 (EF488095) Streptococcus pneumoniae strain 628 SpiR1, SpiR2,... 46 1.5 1 (EF488093) Streptococcus pneumoniae strain TIGR4 SpiR1, SpiR... 46 1.5 1 (CP000936) Streptococcus pneumoniae Hungary19A-6, complete g... 46 1.5 1 (AJ278419) Streptococcus pneumoniae inducing peptide (i) ope... 46 1.5 1 (AJ276410) Streptococcus pneumoniae blp (bacteriocin like pe... 46 1.5 1 (AE005672) Streptococcus pneumoniae TIGR4, complete genome. 46 1.5 1 (AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 32 2.8 2 (AC145103) Homo sapiens chromosome 5 clone RP11-867J11, WORK... 32 2.9 2 (AC064863) Homo sapiens BAC clone RP11-392M11 from 2, comple... 32 3.0 2 (AC073190) Homo sapiens BAC clone RP11-133P24 from 2, comple... 32 3.1 2 (T33578) EST58320 Human Brain Homo sapiens cDNA 3' end simil... 36 4.8 2 (FM992693) Candida dubliniensis CD36 chromosome 6, complete ... 32 5.5 11 (AC120548) Mus musculus chromosome 17, clone RP23-211H11, co... 44 6.1 1 (AC182722) Populus trichocarpa clone Pop1-92L17, complete se... 44 6.1 1 (AC151126) Bos taurus clone CH240-38K24, WORKING DRAFT SEQUE... 44 6.1 1 (AC097288) Rattus norvegicus clone CH230-28A10, WORKING DRAF... 44 6.1 1 (CU656023) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 6.1 1 (AC230527) Bos taurus clone CH240-506A4, WORKING DRAFT SEQUE... 44 6.1 1 (AC224890) Bos taurus clone CH240-473O2, WORKING DRAFT SEQUE... 44 6.1 1 (FH160227) CHO_OF3158xk21f1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 6.1 1 (EJ998425) 1093025003620 Global-Ocean-Sampling_GS-30-02-01-1... 44 6.1 1 (EJ955277) 1093018968704 Global-Ocean-Sampling_GS-30-02-01-1... 44 6.1 1 (EJ122020) 1092343377328 Global-Ocean-Sampling_GS-27-01-01-1... 44 6.1 1 (EC853654) HDE00003705 Hyperamoeba dachnaya Non-normalized (... 44 6.1 1 (AC091173) Homo sapiens chromosome 8, clone RP11-280G9, comp... 40 6.2 2 (AC170095) Bos taurus clone CH240-261B18, WORKING DRAFT SEQU... 32 6.7 6 (CE513885) tigr-gss-dog-17000327396672 Dog Library Canis lup... 38 7.2 2 (AC006374) Homo sapiens BAC clone RP11-357D2 from 7, complet... 40 9.7 5 (CP000609) Methanococcus maripaludis C5, complete genome. 38 9.7 10 (AR584245) Sequence 2 from patent US 6797466. 38 9.8 3 (AR271570) Sequence 2 from patent US 6503729. 38 9.8 3 (L77118) Methanocaldococcus jannaschii DSM 2661 large extra-... 38 9.8 3
>(AC117081) Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence. Length = 183648
Score = 906 bits (457), Expect(2) = 0.0 Identities = 457/457 (100%) Strand = Plus / Plus
Query: 143 aacagcaagaaaacactgctacatcatcaattatatcaactgtcgaaccaagaccatatg 202 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 71675 aacagcaagaaaacactgctacatcatcaattatatcaactgtcgaaccaagaccatatg 71734
Query: 203 taaattcaaatggtgaaacagttgtaagatcaactaatgaaatggatttaattttacaag 262 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 71735 taaattcaaatggtgaaacagttgtaagatcaactaatgaaatggatttaattttacaag 71794
Query: 263 aatcattgttaggtgatgattttgataaagaacaagatttgaatataatttggatggaag 322 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 71795 aatcattgttaggtgatgattttgataaagaacaagatttgaatataatttggatggaag 71854
Query: 323 ttgcatttagagcatcaatcgtttccattaggtctgagaaagttagatatgacgatatca 382 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 71855 ttgcatttagagcatcaatcgtttccattaggtctgagaaagttagatatgacgatatca 71914
Query: 383 ccaaagccaccgatcaatgtggtaatattttaatacatttgctatcaatcattggtaatt 442 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 71915 ccaaagccaccgatcaatgtggtaatattttaatacatttgctatcaatcattggtaatt 71974
Query: 443 cagagacaacatcgttcatggagactgtaaagaatcaagaagctgtaaactcaattcaag 502 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 71975 cagagacaacatcgttcatggagactgtaaagaatcaagaagctgtaaactcaattcaag 72034
Query: 503 aacgtgttaaaaacgttaaggagggtatcaaactccgactgttctctagaattgatcatt 562 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 72035 aacgtgttaaaaacgttaaggagggtatcaaactccgactgttctctagaattgatcatt 72094
Query: 563 ctgaattaattagattagttgcagctttaattggttc 599 ||||||||||||||||||||||||||||||||||||| Sbjct: 72095 ctgaattaattagattagttgcagctttaattggttc 72131
Score = 206 bits (104), Expect(2) = 0.0 Identities = 104/104 (100%) Strand = Plus / Plus
Query: 1 tataaagatgcaattacacaaaagtttaaaaataaatatccaccaaaggcaattgcacca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 71533 tataaagatgcaattacacaaaagtttaaaaataaatatccaccaaaggcaattgcacca 71592
Query: 61 gcaagtccagctactcaagttcttttagcgcaaactgcaggttt 104 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 71593 gcaagtccagctactcaagttcttttagcgcaaactgcaggttt 71636
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 102105510 Number of Hits to DB: 703,179,872 Number of extensions: 42525019 Number of successful extensions: 3447801 Number of sequences better than 10.0: 59 Length of query: 599 Length of database: 101,790,757,118 Length adjustment: 23 Effective length of query: 576 Effective length of database: 99,442,330,388 Effective search space: 57278782303488 Effective search space used: 57278782303488 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7.13 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
1 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |