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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U13981-1
Contig ID Contig-U13981-1
Contig update 2002.12.18
Contig sequence 
>Contig-U13981-1 (Contig-U13981-1Q) /CSM_Contig/Contig-U13981-1Q.Seq.d
ATTTTATTTTATTTTATTTTTAGGAAATACAACACACTGTTTTTACTATA
ATAATTATAATAATAATATATAACAAGAATATCAAATTTATTGTTATAAT
TAATTTTATTTTATTTTGTCAAATTTTCAATTTATTTTAAAAAGCAATTC
ACTTTTTTAGACCAACAATTACAAACAATCATTAATCAAGTCATTACGAT
GGCAGCCCTCATATTGAGAACCCTTTTAGATAACAACGTTTTTAGTAGTA
GTGACTACATACATACGATAAAAGACCCACTTTCAACTAGTATGGTCGAA
GTTTCAGGAAATCCACAATCTTGTGGTGTTTCAGAAGCATTTTCTTCACC
ATCATTGAAGAAAGCTGATGTTTCACTTACTTTTGGCTCCAGTCAAGAAA
TCTCCTATGCCGCAATGTCGGCCCCATTAAATGCCGAGTTCGTAAGATTT
GCTATCAAGCACAAGTCGTATTCCTGATGAAATTGCCCCCACTGATGTCA
ACAAAACCGAACTGGATTTATCCACCAACAACTTTGGAGTACCATTGGCT
GATGTTGTTCTTCCTTCTTCCTCCTCAACAACATTATCACCATCAATCGT
TTCAGAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAG
CCATCAGTTCTGAAGAAATCATAACTTCAAAAGGGTGGAATAAAATCCGG
AGCAGGAGAGGTTACCTTTCTCTATAGTTTATGGTTCAGCTTTTTCAAAG
ACACCAGAAATTGTATCCTTCCAACAACCAACTCAAAAACAAATCAATGA
TTTCCTTCAAATGAAATCTGATGCCACTAGAGTTGTTACATCTGATGGAT
ACATCTTTAGAGAAATTTTCAATCCTGATCATGATGATGGTTTCAAACAA
GCCCTCGAAATGTATGGTTCAAGTTTCTTTGAACCAACAGAGCCAGGTAA
AAATCACCTTCATACTTTATGCAATAGAGGTCTTTATCGTATGATGGTAA
TGGAAGATGATAAAGGTTTAGTTTTAGCTTGTGCTTTTATTGTCGAAGTA
CATGCTTATAAATCCTACCATATGGATTATCTTGCAGTTAGACCAGGTAT
TAGAGGTGGTGGTTTAGGTGGAAAATTCTTTAAACAATTAACCACACACT
TACGTAATGAACAAAAGTATTTAATCATTACATTCGAAAGTGAACCAAAA
TTGGTGCCATGGTATCTCAGAATGTCTTGTCTTCATCTTAATGTAGTTAG
TGATCAAGTAACCTATGAAAATGGTGAAACCTTTTTCTGGTGGTTATTAG
TCGTTCCATTGGGTAAAATCATTGACGATGGCTCTGATGCTGACACTGAT
TCAGATTCTGAACATCCTACTAGCGCTCCATCAACTACTGCACCCAACTA
TGCATTACCATTATCATTAACAGAAAAACAAAGAAATAGATCCTACATCC
TCTACAACGAAAGTGGTGTTTCATATGAATTCAATCAACAAACCATTAAT
GAAATCGCTCAATATTTACTTACTTTTATGTCTGATGCTAAAAAATAATC
ATTTAAACTGTAAATAAATAAATAAAAAAAAATAAAAAAAAAATATATGT
TTACTTTA
Gap no gap
Contig length 1608
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 580724
End point 582332
Strand (PLUS/MINUS) PLUS
Number of clones 9
Number of EST 13
Link to clone list U13981
List of clone(s) 

est1=CFJ617F,1,633
est2=CHD574F,11,623
est3=VFJ568F,26,660
est4=SLH703F,27,744
est5=VSA137Z,42,666
est6=VFA346Z,668,1399
est7=SFK875Z,861,1581
est8=AFN669Z,865,1415
est9=VFJ568Z,879,1530
est10=CHD574Z,890,1523
est11=CFJ617Z,931,1581
est12=CHD739Z,941,1598
est13=SLH703Z,984,1609
Translated Amino Acid sequence 
ilfyfifrkyntlfll**l***yitrisnlll*lilfyfvkfsiyfkkqftfldqqlqti
inqvitmaalilrtlldnnvfsssdyihtikdplstsmvevsgnpqscgvseafsspslk
kadvsltfgssqeisyaamsaplnaefvrfaikhksys**ncph*cqqnrtgfihqqlws
tig*ccssffllnniitinrfrttttttttttttttshqf*rnhnfkrve*NPEQERLPF
SIVYGSAFSKTPEIVSFQQPTQKQINDFLQMKSDATRVVTSDGYIFREIFNPDHDDGFKQ
ALEMYGSSFFEPTEPGKNHLHTLCNRGLYRMMVMEDDKGLVLACAFIVEVHAYKSYHMDY
LAVRPGIRGGGLGGKFFKQLTTHLRNEQKYLIITFESEPKLVPWYLRMSCLHLNVVSDQV
TYENGETFFWWLLVVPLGKIIDDGSDADTDSDSEHPTSAPSTTAPNYALPLSLTEKQRNR
SYILYNESGVSYEFNQQTINEIAQYLLTFMSDAKK*sfkl*ink*kkikkkymftl
Translated Amino Acid sequence (All Frames) 
Frame A:
ilfyfifrkyntlfll**l***yitrisnlll*lilfyfvkfsiyfkkqftfldqqlqti
inqvitmaalilrtlldnnvfsssdyihtikdplstsmvevsgnpqscgvseafsspslk
kadvsltfgssqeisyaamsaplnaefvrfaikhksys**ncph*cqqnrtgfihqqlws
tig*ccssffllnniitinrfrttttttttttttttshqf*rnhnfkrve*NPEQERLPF
SIVYGSAFSKTPEIVSFQQPTQKQINDFLQMKSDATRVVTSDGYIFREIFNPDHDDGFKQ
ALEMYGSSFFEPTEPGKNHLHTLCNRGLYRMMVMEDDKGLVLACAFIVEVHAYKSYHMDY
LAVRPGIRGGGLGGKFFKQLTTHLRNEQKYLIITFESEPKLVPWYLRMSCLHLNVVSDQV
TYENGETFFWWLLVVPLGKIIDDGSDADTDSDSEHPTSAPSTTAPNYALPLSLTEKQRNR
SYILYNESGVSYEFNQQTINEIAQYLLTFMSDAKK*sfkl*ink*kkikkkymftl


Frame B:
fyfilflgntthcfyynnynnni*qeyqiycyn*fyfilsnfqfilksnslf*tnnykqs
likslrwqpsy*epf*ittflvvvttyir*kthfqlvwskfqeihnlvvfqkhflhhh*r
klmfhlllapvkkspmpqcrph*mpss*dllsstsripdeiaptdvnkteldlstnnfgv
pladvvlpssssttlspsivseqqqqqqqqqqqqqqaisseeiitskgwnkirsrrgyls
l*fmvqlfqrhqklypsnnqlknksmisfk*nlmplellhlmdtslekfsilimmmvsnk
pskcmvqvslnqqsqvkitfilyaievfiv*w*wkmikv*f*lvlllskymlinptiwii
lqldqvlevvv*venslnn*phtyvmnksi*slhskvnqnwchgiseclvfilm*lvik*
pmkmvkpfsggy*sfhwvksltmalmltliqilnillalhqllhptmhyhyh*qknkeid
ptssttkvvfhmnsinkplmkslniylllclmlknnhlnck*inkkk*kknicll


Frame C:
filfyf*eiqhtvftiiiiiiiynknikfiviinfilfcqifnlf*kaihffrptitnnh
*sshydgsphienpfr*qrf****lhtydkrptfn*ygrsfrkstilwcfrsifftiiee
s*cftyfwlqsrnllcrnvgpikcrvrkicyqaqvvflmklpplmstkpnwiyppttley
hwlmlffllppqqhyhhqsfqnnnnnnnnnnnnnnkpsvlkks*lqkggiksgagevtfl
yslwfsffkdtrncilpttnsktnq*fpsnei*ch*scyi*wihl*rnfqs*s**wfqts
prnvwfkfl*tnrar*kspsyfmq*rslsydgngr**rfsfslcfycrstcl*ilpygls
cs*try*rwwfrwkil*tinhtlt**tkvfnhyirk*tkigamvsqnvlsss*cs**ssn
l*kw*nlflvvisrsig*nh*rwl*c*h*frf*tsy*rsinyctqlcitiiinrktkk*i
lhplqrkwcfi*iqstnh**nrsiftyfyv*c*kiii*tvnk*ikknkkkiyvyf
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U13981-1 (Contig-U13981-1Q)
/CSM_Contig/Contig-U13981-1Q.Seq.d
         (1608 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13981-1 (Contig-U13981-1Q) /CSM_Contig/Conti...  1832  0.0
Contig-U13840-1 (Contig-U13840-1Q) /CSM_Contig/Conti...    38  0.029
Contig-U03849-1 (Contig-U03849-1Q) /CSM_Contig/Conti...    38  0.029
Contig-U12327-1 (Contig-U12327-1Q) /CSM_Contig/Conti...    36  0.11
Contig-U12043-1 (Contig-U12043-1Q) /CSM_Contig/Conti...    36  0.11
Contig-U13940-1 (Contig-U13940-1Q) /CSM_Contig/Conti...    34  0.45
Contig-U13922-1 (Contig-U13922-1Q) /CSM_Contig/Conti...    34  0.45
Contig-U12746-1 (Contig-U12746-1Q) /CSM_Contig/Conti...    34  0.45
Contig-U11912-1 (Contig-U11912-1Q) /CSM_Contig/Conti...    34  0.45
Contig-U11888-1 (Contig-U11888-1Q) /CSM_Contig/Conti...    34  0.45

>Contig-U13981-1 (Contig-U13981-1Q) /CSM_Contig/Contig-U13981-1Q.Seq.d
          Length = 1608

 Score = 1832 bits (924), Expect = 0.0
 Identities = 924/924 (100%)
 Strand = Plus / Plus

                                                                        
Query: 650  gccatcagttctgaagaaatcataacttcaaaagggtggaataaaatccggagcaggaga 709
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650  gccatcagttctgaagaaatcataacttcaaaagggtggaataaaatccggagcaggaga 709

                                                                        
Query: 710  ggttacctttctctatagtttatggttcagctttttcaaagacaccagaaattgtatcct 769
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710  ggttacctttctctatagtttatggttcagctttttcaaagacaccagaaattgtatcct 769

                                                                        
Query: 770  tccaacaaccaactcaaaaacaaatcaatgatttccttcaaatgaaatctgatgccacta 829
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770  tccaacaaccaactcaaaaacaaatcaatgatttccttcaaatgaaatctgatgccacta 829

                                                                        
Query: 830  gagttgttacatctgatggatacatctttagagaaattttcaatcctgatcatgatgatg 889
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830  gagttgttacatctgatggatacatctttagagaaattttcaatcctgatcatgatgatg 889

                                                                        
Query: 890  gtttcaaacaagccctcgaaatgtatggttcaagtttctttgaaccaacagagccaggta 949
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890  gtttcaaacaagccctcgaaatgtatggttcaagtttctttgaaccaacagagccaggta 949

                                                                        
Query: 950  aaaatcaccttcatactttatgcaatagaggtctttatcgtatgatggtaatggaagatg 1009
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950  aaaatcaccttcatactttatgcaatagaggtctttatcgtatgatggtaatggaagatg 1009

                                                                        
Query: 1010 ataaaggtttagttttagcttgtgcttttattgtcgaagtacatgcttataaatcctacc 1069
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1010 ataaaggtttagttttagcttgtgcttttattgtcgaagtacatgcttataaatcctacc 1069

                                                                        
Query: 1070 atatggattatcttgcagttagaccaggtattagaggtggtggtttaggtggaaaattct 1129
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1070 atatggattatcttgcagttagaccaggtattagaggtggtggtttaggtggaaaattct 1129

                                                                        
Query: 1130 ttaaacaattaaccacacacttacgtaatgaacaaaagtatttaatcattacattcgaaa 1189
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1130 ttaaacaattaaccacacacttacgtaatgaacaaaagtatttaatcattacattcgaaa 1189

                                                                        
Query: 1190 gtgaaccaaaattggtgccatggtatctcagaatgtcttgtcttcatcttaatgtagtta 1249
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1190 gtgaaccaaaattggtgccatggtatctcagaatgtcttgtcttcatcttaatgtagtta 1249

                                                                        
Query: 1250 gtgatcaagtaacctatgaaaatggtgaaacctttttctggtggttattagtcgttccat 1309
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1250 gtgatcaagtaacctatgaaaatggtgaaacctttttctggtggttattagtcgttccat 1309

                                                                        
Query: 1310 tgggtaaaatcattgacgatggctctgatgctgacactgattcagattctgaacatccta 1369
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1310 tgggtaaaatcattgacgatggctctgatgctgacactgattcagattctgaacatccta 1369

                                                                        
Query: 1370 ctagcgctccatcaactactgcacccaactatgcattaccattatcattaacagaaaaac 1429
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1370 ctagcgctccatcaactactgcacccaactatgcattaccattatcattaacagaaaaac 1429

                                                                        
Query: 1430 aaagaaatagatcctacatcctctacaacgaaagtggtgtttcatatgaattcaatcaac 1489
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1430 aaagaaatagatcctacatcctctacaacgaaagtggtgtttcatatgaattcaatcaac 1489

                                                                        
Query: 1490 aaaccattaatgaaatcgctcaatatttacttacttttatgtctgatgctaaaaaataat 1549
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1490 aaaccattaatgaaatcgctcaatatttacttacttttatgtctgatgctaaaaaataat 1549

                                    
Query: 1550 catttaaactgtaaataaataaat 1573
            ||||||||||||||||||||||||
Sbjct: 1550 catttaaactgtaaataaataaat 1573


 Score =  924 bits (466), Expect = 0.0
 Identities = 466/466 (100%)
 Strand = Plus / Plus

                                                                       
Query: 140 aaaagcaattcacttttttagaccaacaattacaaacaatcattaatcaagtcattacga 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 aaaagcaattcacttttttagaccaacaattacaaacaatcattaatcaagtcattacga 199

                                                                       
Query: 200 tggcagccctcatattgagaacccttttagataacaacgtttttagtagtagtgactaca 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tggcagccctcatattgagaacccttttagataacaacgtttttagtagtagtgactaca 259

                                                                       
Query: 260 tacatacgataaaagacccactttcaactagtatggtcgaagtttcaggaaatccacaat 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tacatacgataaaagacccactttcaactagtatggtcgaagtttcaggaaatccacaat 319

                                                                       
Query: 320 cttgtggtgtttcagaagcattttcttcaccatcattgaagaaagctgatgtttcactta 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cttgtggtgtttcagaagcattttcttcaccatcattgaagaaagctgatgtttcactta 379

                                                                       
Query: 380 cttttggctccagtcaagaaatctcctatgccgcaatgtcggccccattaaatgccgagt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cttttggctccagtcaagaaatctcctatgccgcaatgtcggccccattaaatgccgagt 439

                                                                       
Query: 440 tcgtaagatttgctatcaagcacaagtcgtattcctgatgaaattgcccccactgatgtc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tcgtaagatttgctatcaagcacaagtcgtattcctgatgaaattgcccccactgatgtc 499

                                                                       
Query: 500 aacaaaaccgaactggatttatccaccaacaactttggagtaccattggctgatgttgtt 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aacaaaaccgaactggatttatccaccaacaactttggagtaccattggctgatgttgtt 559

                                                         
Query: 560 cttccttcttcctcctcaacaacattatcaccatcaatcgtttcag 605
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cttccttcttcctcctcaacaacattatcaccatcaatcgtttcag 605


 Score = 50.1 bits (25), Expect = 8e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 22 aggaaatacaacacactgtttttac 46
          |||||||||||||||||||||||||
Sbjct: 22 aggaaatacaacacactgtttttac 46


 Score = 30.2 bits (15), Expect = 7.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                           
Query: 1594 tatatgtttacttta 1608
            |||||||||||||||
Sbjct: 1594 tatatgtttacttta 1608


>Contig-U13840-1 (Contig-U13840-1Q) /CSM_Contig/Contig-U13840-1Q.Seq.d
          Length = 1419

 Score = 38.2 bits (19), Expect = 0.029
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 1539 taaaaaataatcatttaaa 1557
            |||||||||||||||||||
Sbjct: 1383 taaaaaataatcatttaaa 1401


>Contig-U03849-1 (Contig-U03849-1Q) /CSM_Contig/Contig-U03849-1Q.Seq.d
          Length = 461

 Score = 38.2 bits (19), Expect = 0.029
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 579 caacattatcaccatcaat 597
           |||||||||||||||||||
Sbjct: 98  caacattatcaccatcaat 116


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,236
Number of Sequences: 6905
Number of extensions: 17236
Number of successful extensions: 2840
Number of sequences better than 10.0: 157
length of query: 1608
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1592
effective length of database: 5,564,391
effective search space: 8858510472
effective search space used: 8858510472
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.16
Homology vs DNA 
Query= Contig-U13981-1 (Contig-U13981-1Q) /CSM_Contig/Contig-U13981-1Q.Seq.d
         (1608 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ428832) Dictyostelium discoideum cDNA clone:ddv1l11, 3' e...  1346   0.0    2
(BJ401301) Dictyostelium discoideum cDNA clone:dds22f20, 3' ...  1344   0.0    1
(BJ376745) Dictyostelium discoideum cDNA clone:ddc29c19, 3' ...  1257   0.0    1
(BJ375792) Dictyostelium discoideum cDNA clone:ddc20a06, 3' ...  1199   0.0    1
(BJ433037) Dictyostelium discoideum cDNA clone:ddv20g17, 3' ...  1197   0.0    2
(BJ376665) Dictyostelium discoideum cDNA clone:ddc29n09, 3' ...  1130   0.0    1
(AU039394) Dictyostelium discoideum slug cDNA, clone SLH703.     1100   0.0    1
(BJ345723) Dictyostelium discoideum cDNA clone:dda28i18, 3' ...  1092   0.0    1
(AU062126) Dictyostelium discoideum slug cDNA, clone SLH703.      884   0.0    4
(AU261303) Dictyostelium discoideum vegetative cDNA clone:VS...   884   0.0    1
(BJ414841) Dictyostelium discoideum cDNA clone:ddv20g17, 5' ...   884   0.0    1
(BJ364062) Dictyostelium discoideum cDNA clone:ddc29c19, 5' ...   884   0.0    1
(BJ362067) Dictyostelium discoideum cDNA clone:ddc20a06, 5' ...   876   0.0    1
(AC176119) Strongylocentrotus purpuratus clone R3-24K19, WOR...    40   0.24   6
(AC084795) Homo sapiens chromosome 16 clone CTD-2007P3, comp...    48   1.0    1
(AC007497) Homo sapiens chromosome 16 clone RP11-36I17, comp...    48   1.0    1
(AC217161) Bos taurus clone CH240-168C22, WORKING DRAFT SEQU...    48   1.0    1
(AC016116) Homo sapiens clone RP11-27G6, LOW-PASS SEQUENCE S...    48   1.0    1
(EG635657) gmapht_0025j24.pDNRm13r.scf Gadus morhua heart li...    48   1.0    1
(AM269955) Aspergillus niger contig An01c0080, complete genome.    46   4.1    1
(AM494971) Leishmania braziliensis chromosome 34.                  46   4.1    1
(AC125608) Homo sapiens 3 BAC RP11-197K6 (Roswell Park Cance...    46   4.1    1
(AC192744) Ixodes scapularis clone XX-61A1, *** SEQUENCING I...    46   4.1    1
(EJ654378) 1092955000518 Global-Ocean-Sampling_GS-30-02-01-1...    46   4.1    1
(EL431308) CHCS5799.b1_M09.ab1 CHC(LMS) Texas blueweed Helia...    46   4.1    1
(DR698923) An_2731.A07 Aspergillus niger pYES2 (XhoI-EcoRI) ...    46   4.1    1
(BE759811) an_2731 Aspergillus niger, pYES2 (XhoI-EcoRI) Asp...    46   4.1    1
(EY247213) CATY5950.rev CATY Aspergillus niger fungal filame...    46   4.1    1
(EY241366) CATY2634.rev CATY Aspergillus niger fungal filame...    46   4.1    1
(EY233496) CATW7152.fwd CATW Aspergillus niger Pelleted fung...    46   4.1    1
(EY233495) CATW7152.rev CATW Aspergillus niger Pelleted fung...    46   4.1    1
(CO087107) GR__Ea05G18.f GR__Ea Gossypium raimondii cDNA clo...    34   4.4    3
(AC181946) Strongylocentrotus purpuratus clone R3-1008B10, W...    38   5.8    6
(FG606827) stem_S014_E07.SEQ Opium poppy stem cDNA library P...    42   7.6    2
(FG612501) stem_S086_F07.SEQ Opium poppy stem cDNA library P...    42   8.0    2

>(BJ428832) Dictyostelium discoideum cDNA clone:ddv1l11, 3' end,
            single read.
          Length = 729

 Score = 1346 bits (679), Expect(2) = 0.0
 Identities = 679/679 (100%)
 Strand = Plus / Minus


Query: 668  atcataacttcaaaagggtggaataaaatccggagcaggagaggttacctttctctatag 727
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729  atcataacttcaaaagggtggaataaaatccggagcaggagaggttacctttctctatag 670


Query: 728  tttatggttcagctttttcaaagacaccagaaattgtatccttccaacaaccaactcaaa 787
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669  tttatggttcagctttttcaaagacaccagaaattgtatccttccaacaaccaactcaaa 610


Query: 788  aacaaatcaatgatttccttcaaatgaaatctgatgccactagagttgttacatctgatg 847
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609  aacaaatcaatgatttccttcaaatgaaatctgatgccactagagttgttacatctgatg 550


Query: 848  gatacatctttagagaaattttcaatcctgatcatgatgatggtttcaaacaagccctcg 907
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549  gatacatctttagagaaattttcaatcctgatcatgatgatggtttcaaacaagccctcg 490


Query: 908  aaatgtatggttcaagtttctttgaaccaacagagccaggtaaaaatcaccttcatactt 967
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489  aaatgtatggttcaagtttctttgaaccaacagagccaggtaaaaatcaccttcatactt 430


Query: 968  tatgcaatagaggtctttatcgtatgatggtaatggaagatgataaaggtttagttttag 1027
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429  tatgcaatagaggtctttatcgtatgatggtaatggaagatgataaaggtttagttttag 370


Query: 1028 cttgtgcttttattgtcgaagtacatgcttataaatcctaccatatggattatcttgcag 1087
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369  cttgtgcttttattgtcgaagtacatgcttataaatcctaccatatggattatcttgcag 310


Query: 1088 ttagaccaggtattagaggtggtggtttaggtggaaaattctttaaacaattaaccacac 1147
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309  ttagaccaggtattagaggtggtggtttaggtggaaaattctttaaacaattaaccacac 250


Query: 1148 acttacgtaatgaacaaaagtatttaatcattacattcgaaagtgaaccaaaattggtgc 1207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249  acttacgtaatgaacaaaagtatttaatcattacattcgaaagtgaaccaaaattggtgc 190


Query: 1208 catggtatctcagaatgtcttgtcttcatcttaatgtagttagtgatcaagtaacctatg 1267
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189  catggtatctcagaatgtcttgtcttcatcttaatgtagttagtgatcaagtaacctatg 130


Query: 1268 aaaatggtgaaacctttttctggtggttattagtcgttccattgggtaaaatcattgacg 1327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129  aaaatggtgaaacctttttctggtggttattagtcgttccattgggtaaaatcattgacg 70


Query: 1328 atggctctgatgctgacac 1346
            |||||||||||||||||||
Sbjct: 69   atggctctgatgctgacac 51

 Score = 63.9 bits (32), Expect(2) = 0.0
 Identities = 36/38 (94%)
 Strand = Plus / Minus


Query: 1361 aacatcctactagcgctccatcaactactgcacccaac 1398
            ||||||||||||||||||||||||| || |||||||||
Sbjct: 38   aacatcctactagcgctccatcaacnacngcacccaac 1

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,487,568,271
Number of extensions: 85862734
Number of successful extensions: 6804423
Number of sequences better than 10.0: 35
Length of query: 1608
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1584
Effective length of database: 97,308,875,965
Effective search space: 154137259528560
Effective search space used: 154137259528560
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 9
Homology vs Protein 
Query= Contig-U13981-1 (Contig-U13981-1Q) /CSM_Contig/Contig-U13981-1Q.Seq.d
         (1608 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54R69) RecName: Full=Uncharacterized protein DDB_G0283377;          521   0.0

>(Q54R69) RecName: Full=Uncharacterized protein DDB_G0283377;
          Length = 441

 Score =  521 bits (1341), Expect(4) = 0.0
 Identities = 257/278 (92%), Positives = 257/278 (92%)
 Frame = +1

Query: 712  LPFSIVYGSAFSKTPEIVSFQQPTQKQINDFLQMKSDATRVVTSDGYIFREIFNPDHDDG 891
            LPFSIVYGSAFSKTPEIVSFQQPTQKQINDFLQMKSDATRVVTSDGYIFREIFNPDHDDG
Sbjct: 164  LPFSIVYGSAFSKTPEIVSFQQPTQKQINDFLQMKSDATRVVTSDGYIFREIFNPDHDDG 223

Query: 892  FKQALEMYGSSFFEPTEPGKNHLHTLCNRGLYRMMVMEDDKGLVLACAFIVEVHAYKSYH 1071
            FKQALEMYGSSFFEPTEPGKNHLHTLCNRGLYRMMVMEDDKGLVLACAFIVEVHAYKSYH
Sbjct: 224  FKQALEMYGSSFFEPTEPGKNHLHTLCNRGLYRMMVMEDDKGLVLACAFIVEVHAYKSYH 283

Query: 1072 MDYLAVRPXXXXXXXXXKFFKQLTTHLRNEQKYLIITFESEPKLVPWYLRMSCLHLNVVS 1251
            MDYLAVRP         KFFKQLTTHLRNEQKYLIITFESEPKLVPWYLRMSCLHLNVVS
Sbjct: 284  MDYLAVRPGIRGGGLGGKFFKQLTTHLRNEQKYLIITFESEPKLVPWYLRMSCLHLNVVS 343

Query: 1252 DQVTYENGETFFWWLLVVPLGKIIXXXXXXXXXXXXEHPTSAPSTTAPNYALPLSLTEKQ 1431
            DQVTYENGETFFWWLLVVPLGKII            EHPTSAPSTTAPNYALPLSLTEKQ
Sbjct: 344  DQVTYENGETFFWWLLVVPLGKIIDDGSDADTDSDSEHPTSAPSTTAPNYALPLSLTEKQ 403

Query: 1432 RNRSYILYNESGVSYEFNQQTINEIAQYLLTFMSDAKK 1545
            RNRSYILYNESGVSYEFNQQTINEIAQYLLTFMSDAKK
Sbjct: 404  RNRSYILYNESGVSYEFNQQTINEIAQYLLTFMSDAKK 441

 Score =  154 bits (390), Expect(4) = 0.0
 Identities = 80/83 (96%), Positives = 81/83 (97%)
 Frame = +1

Query: 199 MAALILRTLLDNNVFSSSDYIHTIKDPLSTSMVEVSGNPQSCGVSEAFSSPSLKKADVSL 378
           MAALILRTLLDNNVFSSSDYIHTIKDPLSTSMVEVSGNPQSCGVSEAFSSPSLKKADVSL
Sbjct: 1   MAALILRTLLDNNVFSSSDYIHTIKDPLSTSMVEVSGNPQSCGVSEAFSSPSLKKADVSL 60

Query: 379 TFGSSQEISYAAMSAPLNAEFVR 447
           TFGSSQEISYAAMSAPLNA+  R
Sbjct: 61  TFGSSQEISYAAMSAPLNADTSR 83

 Score = 83.2 bits (204), Expect(4) = 0.0
 Identities = 48/79 (60%), Positives = 49/79 (62%)
 Frame = +2

Query: 449 LLSSTSRIPDEIAPTDVNKTELDLSTNNFGVPLADXXXXXXXXXXXXXXIVSEXXXXXXX 628
           L + TSRIPDEIAPTDVNKTELDLSTNNFGVPLAD              IVSE
Sbjct: 77  LNADTSRIPDEIAPTDVNKTELDLSTNNFGVPLADVVLPSSSSTTLSPSIVSEQQQQQQQ 136

Query: 629 XXXXXXXAISSEEIITSKG 685
                  AISSEEIITSKG
Sbjct: 137 QQQQQQQAISSEEIITSKG 155

 Score = 26.6 bits (57), Expect(4) = 0.0
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = +3

Query: 681 KGGIKSGAGEVTF 719
           KGGIKSGAGE+ F
Sbjct: 154 KGGIKSGAGELPF 166

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,434,575,316
Number of extensions: 45672248
Number of successful extensions: 92560
Number of sequences better than 10.0: 1
Number of HSP's gapped: 92525
Number of HSP's successfully gapped: 4
Length of query: 536
Length of database: 1,051,180,864
Length adjustment: 133
Effective length of query: 403
Effective length of database: 620,718,517
Effective search space: 250149562351
Effective search space used: 250149562351
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.75  gvh: 0.47  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 32.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for Contig-U13981-1 is cyt
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 2
AH (FL, L) 0
AF (FL, S) 1
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 2
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0