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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U13978-1
Contig ID Contig-U13978-1
Contig update 2002.12.18
Contig sequence 
>Contig-U13978-1 (Contig-U13978-1Q) /CSM_Contig/Contig-U13978-1Q.Seq.d
ATATTAAATTTTTGTTTATTTATTTCATTTATAAAAAACTACATATATAT
ATATATATAGATAATGTCAGAAACACAAGAATTTTGGTTAATTTCAGCTC
CAAACCTTCCAGGTGCTGACATTTTTGACCAAGTCAATCAAAAGACTGCC
AAAGAAAATAGTTTATCTGAAAACAAAAAATTTAATACACCAGCATTAAG
AGTTGGTACTCTCAATTCATTGATTACACTCAATGATGAATTACAAAAAA
TCGATACCATTGTAGAATCTACAACCAAAAAGATTGCCAGACAATTAGTC
GATTTAGTTGGAACCAAACCAGGTAAAGATAAGAGTCTTTCAATCAATGG
TCACACCATTCCACAATACCTTCAACAATTTGCCTGGGATGATGCCAAAT
ATAACTTAAAATTATCATTACAAGAAATTGTCGAAAAAATTTCATCTGCA
GTCTCAAAGATTGATGATGATTTAAAAATCAAATCAAGTGAATATTCAAC
ACTTTCATCCTCTGTTGCATCTGAAGAAAGAAAAGCAAGTGGTAATCTCC
AAGTTCGTACTTTAAATGACTTAATTACAGCTGATAATATCGTTCAAACT
GATTACTTTACAACTGCTTTCGTTGTTATTCCAAAACAATCCGAAAAAGA
ATTTTTAGCCTGTTATGAAACCATTTCAGATTTTGTACTTGGAAGATCAG
CTAAAAGAGTTGCCCAAGATAATGATTATTTCTTATACAGTGTAATTTTA
TTCAAGAAATTCTATGAAAACTTTAAAACTAAAATCATTGAAAAGAAATG
GGTAGTAAGAGATTTCAAATTAGAAGATAATAAACCAACTCAAGAAAGAT
CAAAATTAACAGAAGATAAAAAGAATTGTAGAACATCATTAATTCGTTGG
TGTAGATTAAATTTCCCAGAGGCTTTTATGGCATGGGTTCACTTAAAAGT
TGTTAGAGTATTCGTTGAATCTGTACTTAGATTTGGTATTCCATTCAACT
TCCAAGCTATCCTCATGAAACCACAAAAAGGTGCCGATAAAAAGGTTCGT
GATATACTTTTCGATCAATTCAAATATTTAGGTTCTGCTCATATCTCTGG
TAAGAATGAAACTGATGATTCCGAAAAATTCTATCCATATATTTCCGTTT
CAGTGAATTGGGAAAATTAATATAATCATTATGACTGCAAACTAAAATAA
ATAAATAAATAAAAAAAAAATAAACAAATAAAAAAAATAAAAAAAAAAAA
AAAAAAAAAAAAA
Gap no gap
Contig length 1263
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 2154535
End point 2153271
Strand (PLUS/MINUS) MINUS
Number of clones 31
Number of EST 45
Link to clone list U13978
List of clone(s) 

est1=VFB776F,-16,497
est2=VFI883F,0,540
est3=AFL423F,1,552
est4=AFO447F,1,625
est5=SFK464F,1,616
est6=VFB240F,1,606
est7=VFE575F,1,373
est8=VFJ873F,1,528
est9=VFH290F,3,497
est10=VFG653F,5,542
est11=VFJ434F,5,624
est12=VFL735F,14,623
est13=SFB812E,21,1190
est14=CHB659F,22,544
est15=VFK181F,22,614
est16=VFC165F,24,374
est17=SSB667F,26,314
est18=SFE581E,31,1225
est19=VFA342F,31,543
est20=VFD323E,31,1252
est21=SFE554F,35,164
est22=CHB338F,41,550
est23=VFB252F,48,627
est24=CFE361F,140,696
est25=VFF894Z,226,675
est26=VFD132Z,434,573
est27=VFJ873Z,523,1167
est28=CHB338Z,556,1215
est29=AFL423Z,560,1211
est30=SFF755Z,561,1224
est31=VFI883Z,568,1172
est32=SFE554Z,577,1239
est33=VFB240Z,596,1104
est34=VFA342Z,601,1264
est35=VFL735Z,611,1155
est36=VFB776Z,620,1224
est37=VSA308Z,644,1264
est38=VSJ525F,668,858
est39=VSJ525Z,668,789
est40=VFB252Z,685,1172
est41=VFI882Z,742,1178
est42=VFC165Z,769,1141
est43=VFH290Z,771,1202
est44=SSH554Z,787,1251
est45=VFE575Z,834,1090
Translated Amino Acid sequence 
ilnfclfisfiknyiyiyi*IMSETQEFWLISAPNLPGADIFDQVNQKTAKENSLSENKK
FNTPALRVGTLNSLITLNDELQKIDTIVESTTKKIARQLVDLVGTKPGKDKSLSINGHTI
PQYLQQFAWDDAKYNLKLSLQEIVEKISSAVSKIDDDLKIKSSEYSTLSSSVASEERKAS
GNLQVRTLNDLITADNIVQTDYFTTAFVVIPKQSEKEFLACYETISDFVLGRSAKRVAQD
NDYFLYSVILFKKFYENFKTKIIEKKWVVRDFKLEDNKPTQERSKLTEDKKNCRTSLIRW
CRLNFPEAFMAWVHLKVVRVFVESVLRFGIPFNFQAILMKPQKGADKKVRDILFDQFKYL
GSAHISGKNETDDSEKFYPYISVSVNWEN*ynhydcklk*ink*kknkqikkikkkkkkk
k
Translated Amino Acid sequence (All Frames) 
Frame A:
ilnfclfisfiknyiyiyi*IMSETQEFWLISAPNLPGADIFDQVNQKTAKENSLSENKK
FNTPALRVGTLNSLITLNDELQKIDTIVESTTKKIARQLVDLVGTKPGKDKSLSINGHTI
PQYLQQFAWDDAKYNLKLSLQEIVEKISSAVSKIDDDLKIKSSEYSTLSSSVASEERKAS
GNLQVRTLNDLITADNIVQTDYFTTAFVVIPKQSEKEFLACYETISDFVLGRSAKRVAQD
NDYFLYSVILFKKFYENFKTKIIEKKWVVRDFKLEDNKPTQERSKLTEDKKNCRTSLIRW
CRLNFPEAFMAWVHLKVVRVFVESVLRFGIPFNFQAILMKPQKGADKKVRDILFDQFKYL
GSAHISGKNETDDSEKFYPYISVSVNWEN*ynhydcklk*ink*kknkqikkikkkkkkk
k


Frame B:
y*ifvylfhl*kttyiyiyr*cqkhknfg*fqlqtfqvltfltksikrlpkkivylktkn
lihqh*elvlsih*lhsmmnykksipl*nlqpkrlpdn*si*lepnqvkirvfqsmvtpf
hntfnnlpgmmpnit*nyhykklskkfhlqsqrlmmi*ksnqvniqhfhpllhlkkekqv
viskfvl*mt*lqliisfklitlqllsllfqnnpkknf*pvmkpfqilyledqlkelpki
miisytv*fysrnsmktlklkslkrng**eisn*kiinqlkkdqn*qkikrivehh*fvg
vd*isqrllwhgft*klleyslnlyldlvfhstsklss*nhkkvpikrfviyfsinsni*
vllislvrmklmipknsihifpfq*igkiniiimtan*nk*inkkkink*kk*kkkkkkk


Frame C:
ikflfiyfiykklhiyiyidnvrntrilvnfsskpsrc*hf*psqskdcqrk*fi*kqki
*ytsikswysqfidytq**itknryhcriynqkdcqtisrfswnqtr*r*esfnqwshhs
tipsticlg*cqi*lkiiitrncrknficslkd***fknqik*ifntfilcci*rkkskw
*spssyfk*lnys**yrsn*llyncfrcysktirkrifsll*nhfrfctwkis*kscpr*
*lfliqcnfiqeil*kl*n*nh*kemgskrfqirr**tnsrkikinrr*kel*niinslv
*ikfprgfygmgslksc*sir*ict*iwysiqlpsyphettkrcr*kgs*ytfrsiqifr
fcsylw*e*n**frkilsiyfrfselgkli*sl*lqtkink*ikkk*tnkknkkkkkkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U13978-1 (Contig-U13978-1Q)
/CSM_Contig/Contig-U13978-1Q.Seq.d
         (1263 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13978-1 (Contig-U13978-1Q) /CSM_Contig/Conti...  2238  0.0
Contig-U09794-1 (Contig-U09794-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U09946-1 (Contig-U09946-1Q) /CSM_Contig/Conti...    36  0.089
Contig-U09782-1 (Contig-U09782-1Q) /CSM_Contig/Conti...    36  0.089
Contig-U01677-1 (Contig-U01677-1Q) /CSM_Contig/Conti...    36  0.089
Contig-U14815-1 (Contig-U14815-1Q) /CSM_Contig/Conti...    34  0.35
Contig-U14356-1 (Contig-U14356-1Q) /CSM_Contig/Conti...    34  0.35
Contig-U13955-1 (Contig-U13955-1Q) /CSM_Contig/Conti...    34  0.35
Contig-U13869-1 (Contig-U13869-1Q) /CSM_Contig/Conti...    34  0.35
Contig-U13278-1 (Contig-U13278-1Q) /CSM_Contig/Conti...    34  0.35

>Contig-U13978-1 (Contig-U13978-1Q) /CSM_Contig/Contig-U13978-1Q.Seq.d
          Length = 1263

 Score = 2238 bits (1129), Expect = 0.0
 Identities = 1129/1129 (100%)
 Strand = Plus / Plus

                                                                        
Query: 60   gataatgtcagaaacacaagaattttggttaatttcagctccaaaccttccaggtgctga 119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60   gataatgtcagaaacacaagaattttggttaatttcagctccaaaccttccaggtgctga 119

                                                                        
Query: 120  catttttgaccaagtcaatcaaaagactgccaaagaaaatagtttatctgaaaacaaaaa 179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120  catttttgaccaagtcaatcaaaagactgccaaagaaaatagtttatctgaaaacaaaaa 179

                                                                        
Query: 180  atttaatacaccagcattaagagttggtactctcaattcattgattacactcaatgatga 239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180  atttaatacaccagcattaagagttggtactctcaattcattgattacactcaatgatga 239

                                                                        
Query: 240  attacaaaaaatcgataccattgtagaatctacaaccaaaaagattgccagacaattagt 299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240  attacaaaaaatcgataccattgtagaatctacaaccaaaaagattgccagacaattagt 299

                                                                        
Query: 300  cgatttagttggaaccaaaccaggtaaagataagagtctttcaatcaatggtcacaccat 359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300  cgatttagttggaaccaaaccaggtaaagataagagtctttcaatcaatggtcacaccat 359

                                                                        
Query: 360  tccacaataccttcaacaatttgcctgggatgatgccaaatataacttaaaattatcatt 419
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360  tccacaataccttcaacaatttgcctgggatgatgccaaatataacttaaaattatcatt 419

                                                                        
Query: 420  acaagaaattgtcgaaaaaatttcatctgcagtctcaaagattgatgatgatttaaaaat 479
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420  acaagaaattgtcgaaaaaatttcatctgcagtctcaaagattgatgatgatttaaaaat 479

                                                                        
Query: 480  caaatcaagtgaatattcaacactttcatcctctgttgcatctgaagaaagaaaagcaag 539
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480  caaatcaagtgaatattcaacactttcatcctctgttgcatctgaagaaagaaaagcaag 539

                                                                        
Query: 540  tggtaatctccaagttcgtactttaaatgacttaattacagctgataatatcgttcaaac 599
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540  tggtaatctccaagttcgtactttaaatgacttaattacagctgataatatcgttcaaac 599

                                                                        
Query: 600  tgattactttacaactgctttcgttgttattccaaaacaatccgaaaaagaatttttagc 659
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600  tgattactttacaactgctttcgttgttattccaaaacaatccgaaaaagaatttttagc 659

                                                                        
Query: 660  ctgttatgaaaccatttcagattttgtacttggaagatcagctaaaagagttgcccaaga 719
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660  ctgttatgaaaccatttcagattttgtacttggaagatcagctaaaagagttgcccaaga 719

                                                                        
Query: 720  taatgattatttcttatacagtgtaattttattcaagaaattctatgaaaactttaaaac 779
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720  taatgattatttcttatacagtgtaattttattcaagaaattctatgaaaactttaaaac 779

                                                                        
Query: 780  taaaatcattgaaaagaaatgggtagtaagagatttcaaattagaagataataaaccaac 839
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780  taaaatcattgaaaagaaatgggtagtaagagatttcaaattagaagataataaaccaac 839

                                                                        
Query: 840  tcaagaaagatcaaaattaacagaagataaaaagaattgtagaacatcattaattcgttg 899
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840  tcaagaaagatcaaaattaacagaagataaaaagaattgtagaacatcattaattcgttg 899

                                                                        
Query: 900  gtgtagattaaatttcccagaggcttttatggcatgggttcacttaaaagttgttagagt 959
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900  gtgtagattaaatttcccagaggcttttatggcatgggttcacttaaaagttgttagagt 959

                                                                        
Query: 960  attcgttgaatctgtacttagatttggtattccattcaacttccaagctatcctcatgaa 1019
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 960  attcgttgaatctgtacttagatttggtattccattcaacttccaagctatcctcatgaa 1019

                                                                        
Query: 1020 accacaaaaaggtgccgataaaaaggttcgtgatatacttttcgatcaattcaaatattt 1079
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1020 accacaaaaaggtgccgataaaaaggttcgtgatatacttttcgatcaattcaaatattt 1079

                                                                        
Query: 1080 aggttctgctcatatctctggtaagaatgaaactgatgattccgaaaaattctatccata 1139
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1080 aggttctgctcatatctctggtaagaatgaaactgatgattccgaaaaattctatccata 1139

                                                             
Query: 1140 tatttccgtttcagtgaattgggaaaattaatataatcattatgactgc 1188
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1140 tatttccgtttcagtgaattgggaaaattaatataatcattatgactgc 1188


 Score = 83.8 bits (42), Expect = 4e-16
 Identities = 42/42 (100%)
 Strand = Plus / Plus

                                                    
Query: 1  atattaaatttttgtttatttatttcatttataaaaaactac 42
          ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  atattaaatttttgtttatttatttcatttataaaaaactac 42


>Contig-U09794-1 (Contig-U09794-1Q) /CSM_Contig/Contig-U09794-1Q.Seq.d
          Length = 675

 Score = 38.2 bits (19), Expect = 0.023
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 522 tgaagaaagaaaagcaagt 540
           |||||||||||||||||||
Sbjct: 268 tgaagaaagaaaagcaagt 286


>Contig-U09946-1 (Contig-U09946-1Q) /CSM_Contig/Contig-U09946-1Q.Seq.d
          Length = 1243

 Score = 36.2 bits (18), Expect = 0.089
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 13   tgtttatttatttcatttataa 34
            ||||||||||||| ||||||||
Sbjct: 1229 tgtttatttatttaatttataa 1208


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,701
Number of Sequences: 6905
Number of extensions: 19701
Number of successful extensions: 2194
Number of sequences better than 10.0: 233
length of query: 1263
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1247
effective length of database: 5,564,391
effective search space: 6938795577
effective search space used: 6938795577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.16
Homology vs DNA 
Query= Contig-U13978-1 (Contig-U13978-1Q) /CSM_Contig/Contig-U13978-1Q.Seq.d
         (1263 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(L41839) Dictyostelium discoideum H(+)-transporting ATPase c...  2246   0.0    2
(BJ399092) Dictyostelium discoideum cDNA clone:dds4h04, 3' e...  1350   0.0    2
(BJ433087) Dictyostelium discoideum cDNA clone:ddv20b20, 3' ...  1247   0.0    1
(BJ398042) Dictyostelium discoideum cDNA clone:dds10a21, 3' ...  1221   0.0    1
(BJ377394) Dictyostelium discoideum cDNA clone:ddc24l09, 3' ...  1176   0.0    1
(BJ398017) Dictyostelium discoideum cDNA clone:dds10k13, 3' ...  1166   0.0    1
(BJ398501) Dictyostelium discoideum cDNA clone:dds12n13, 3' ...  1156   0.0    2
(BJ345276) Dictyostelium discoideum cDNA clone:dda23n06, 3' ...  1144   0.0    2
(BJ328770) Dictyostelium discoideum cDNA clone:dda29n12, 5' ...  1122   0.0    2
(BJ415955) Dictyostelium discoideum cDNA clone:ddv24f09, 5' ...  1118   0.0    1
(BJ412164) Dictyostelium discoideum cDNA clone:ddv7n05, 5' e...  1114   0.0    1
(BJ414469) Dictyostelium discoideum cDNA clone:ddv19d10, 5' ...  1108   0.0    2
(BJ386798) Dictyostelium discoideum cDNA clone:dds10a21, 5' ...  1106   0.0    1
(BJ361058) Dictyostelium discoideum cDNA clone:ddc9j15, 5' e...  1104   0.0    1
(BJ415185) Dictyostelium discoideum cDNA clone:ddv21a21, 5' ...  1100   0.0    2
(BJ390249) Dictyostelium discoideum cDNA clone:dds21p16, 5' ...  1092   0.0    2
(AU261410) Dictyostelium discoideum vegetative cDNA clone:VS...  1088   0.0    1
(BJ411215) Dictyostelium discoideum cDNA clone:ddv3o10, 5' e...  1076   0.0    3
(BJ434577) Dictyostelium discoideum cDNA clone:ddv24f09, 3' ...  1066   0.0    1
(BJ411242) Dictyostelium discoideum cDNA clone:ddv3g14, 5' e...  1055   0.0    2
(BJ428799) Dictyostelium discoideum cDNA clone:ddv1d11, 3' e...  1041   0.0    1
(BJ429775) Dictyostelium discoideum cDNA clone:ddv4h19, 3' e...  1005   0.0    2
(BJ414333) Dictyostelium discoideum cDNA clone:ddv18f22, 5' ...   954   0.0    2
(BJ328169) Dictyostelium discoideum cDNA clone:dda23n06, 5' ...   977   0.0    3
(BJ413209) Dictyostelium discoideum cDNA clone:ddv14i14, 5' ...   950   0.0    2
(BJ363201) Dictyostelium discoideum cDNA clone:ddc25e16, 5' ...   961   0.0    2
(BJ362976) Dictyostelium discoideum cDNA clone:ddc24l09, 5' ...   967   0.0    1
(BJ417846) Dictyostelium discoideum cDNA clone:ddv15c24, 5' ...   930   0.0    3
(BJ410634) Dictyostelium discoideum cDNA clone:ddv1d11, 5' e...   959   0.0    1
(BJ387663) Dictyostelium discoideum cDNA clone:dds4h04, 5' e...   954   0.0    1
(BJ414887) Dictyostelium discoideum cDNA clone:ddv20b20, 5' ...   930   0.0    3
(BJ432480) Dictyostelium discoideum cDNA clone:ddv18f22, 3' ...   908   0.0    1
(BJ430417) Dictyostelium discoideum cDNA clone:ddv7n05, 3' e...   908   0.0    1
(BJ411542) Dictyostelium discoideum cDNA clone:ddv4h19, 5' e...   835   0.0    2
(BJ429430) Dictyostelium discoideum cDNA clone:ddv3o10, 3' e...   872   0.0    1
(AU038316) Dictyostelium discoideum slug cDNA, clone SSH554.      809   0.0    1
(BJ429463) Dictyostelium discoideum cDNA clone:ddv3g14, 3' e...   789   0.0    1
(BJ431843) Dictyostelium discoideum cDNA clone:ddv15c24, 3' ...   622   0.0    2
(BJ428699) Dictyostelium discoideum cDNA clone:ddv12l24, 3' ...   676   0.0    2
(BJ409982) Dictyostelium discoideum cDNA clone:ddv10e19, 5' ...   622   0.0    2
(BJ429944) Dictyostelium discoideum cDNA clone:ddv5a17, 3' e...   605   0.0    2
(BJ432470) Dictyostelium discoideum cDNA clone:ddv18d22, 3' ...   626   e-175  1
(BJ411709) Dictyostelium discoideum cDNA clone:ddv5a17, 5' e...   611   e-170  1
(AU071501) Dictyostelium discoideum slug cDNA, clone SSB667.      408   e-113  2
(BJ428110) Dictyostelium discoideum cDNA clone:ddv10e19, 3' ...   325   2e-84  1
(BJ430491) Dictyostelium discoideum cDNA clone:ddv7o07, 3' e...   260   1e-64  1
(AU270053) Dictyostelium discoideum vegetative cDNA clone:VS...   182   2e-41  1
(BJ386776) Dictyostelium discoideum cDNA clone:dds10k13, 5' ...   182   2e-41  1
(AU270054) Dictyostelium discoideum vegetative cDNA clone:VS...   176   1e-39  1
(FE334586) CAOC3853.fwd CAOC_Daphnia_pulex_Log50_Library_9 D...    56   0.003  1
(FE334585) CAOC3853.rev CAOC_Daphnia_pulex_Log50_Library_9 D...    56   0.003  1
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    38   0.085  18
(ER288820) 1092343588624 Global-Ocean-Sampling_GS-34-01-01-1...    38   0.16   2
(CU466487) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   0.21   9
(AL805948) Mouse DNA sequence from clone RP23-18C13 on chrom...    50   0.21   1
(AC138342) Mus musculus chromosome 12, clone RP23-37C23, com...    50   0.21   1
(AC129983) Mus musculus clone RP23-32O2, *** SEQUENCING IN P...    50   0.21   1
(AC099718) Mus musculus clone RP23-368E4, WORKING DRAFT SEQU...    50   0.21   1
(AB367391) Photobacterium phosphoreum DNA, lux operon and up...    40   0.24   3
(AC006278) Plasmodium falciparum chromosome 12 clone 3D7, **...    40   0.35   7
(AL806524) Mouse DNA sequence from clone RP23-158E10 on chro...    38   0.64   6
(BX927062) Zebrafish DNA sequence from clone CH211-227N20 in...    48   0.82   1
(BX324113) Zebrafish DNA sequence from clone DKEYP-68B7 in l...    48   0.82   1
(AL611930) Mouse DNA sequence from clone RP23-58H5 on chromo...    48   0.82   1
(AC147792) Mus musculus chromosome 17 clone RP24-344G9 map 1...    48   0.82   1
(CU856147) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    48   0.82   1
(AC174631) Oryctolagus cuniculus clone LB1-130N16, WORKING D...    48   0.82   1
(ER499527) 1093015393419 Global-Ocean-Sampling_GS-35-01-01-1...    48   0.82   1
(EK215432) 1095460117110 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.82   1
(EK167272) 1095458058762 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.82   1
(EJ212998) 1092351001469 Global-Ocean-Sampling_GS-27-01-01-1...    48   0.82   1
(CV741914) SJAL_035_95.T3 SJL Schistosoma japonicum cDNA, mR...    48   0.82   1
(CV674304) RET7SJ_31F11.T7 Schistosoma japonicum reverse cDN...    48   0.82   1
(BG224376) kp45f12.y1 TBN95TM-SSFH Strongyloides stercoralis...    48   0.82   1
(FE423067) CBTX3782.rev CBTX_Daphnia_pulex_Chosen_One_Librar...    48   0.82   1
(FE417138) CBTW2382.rev CBTW_Daphnia_pulex_Chosen_One_Librar...    48   0.82   1
(FE413292) CBTU3835.rev CBTU_Daphnia_pulex_Chosen_One_Librar...    48   0.82   1
(FE395634) CBTP2902.rev CBTP_Daphnia_pulex_Chosen_One_Librar...    48   0.82   1
(FE385054) CBNT3537.fwd CBNT_Daphnia_pulex_Chosen_One_Librar...    48   0.82   1
(FE385053) CBNT3537.rev CBNT_Daphnia_pulex_Chosen_One_Librar...    48   0.82   1
(FE364933) CBNO3566.fwd CBNO_Daphnia_pulex_Chosen_One_Librar...    48   0.82   1
(FE364932) CBNO3566.rev CBNO_Daphnia_pulex_Chosen_One_Librar...    48   0.82   1
(FE356827) CBNN15244.rev CBNN_Daphnia_pulex_Chosen_One_Libra...    48   0.82   1
(FE352681) CBIC3948.rev CBIC_Daphnia_pulex_Chosen_One_Librar...    48   0.82   1
(FE351763) CBIC2859.rev CBIC_Daphnia_pulex_Chosen_One_Librar...    48   0.82   1
(FE348303) CBIB7718.rev CBIB_Daphnia_pulex_Chosen_One_Librar...    48   0.82   1
(FE338057) CAOC683.fwd CAOC_Daphnia_pulex_Log50_Library_9 Da...    48   0.82   1
(CU896651) M.truncatula DNA sequence from clone MTE1-27C22 o...    42   1.0    2
(CU570843) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   1.1    3
(AC168638) Strongylocentrotus purpuratus clone R3-3018H9, WO...    40   1.2    4
(CU571155) M.truncatula DNA sequence from clone MTH2-78H8 on...    42   1.3    2
(CU896604) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    38   1.4    9
(Z95559) Caenorhabditis elegans YAC Y41E3.                         36   1.4    10
(CU694678) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   1.6    4
(AL844507) Plasmodium falciparum chromosome 8.                     34   1.7    13
(ER505249) 1093015418046 Global-Ocean-Sampling_GS-35-01-01-1...    34   2.0    3
(EJ212340) 1092347053265 Global-Ocean-Sampling_GS-27-01-01-1...    34   2.0    3
(AJ926788) Theileria annulata EST, clone tam018b11_p1k.            32   2.2    2
(AC175931) Strongylocentrotus purpuratus clone R3-3038I6, WO...    34   2.2    7
(AE014834) Plasmodium falciparum 3D7 chromosome 10 section 6...    36   2.4    8

>(L41839) Dictyostelium discoideum H(+)-transporting ATPase chain C
            mRNA, complete cds.
          Length = 1193

 Score = 2246 bits (1133), Expect(2) = 0.0
 Identities = 1133/1133 (100%)
 Strand = Plus / Plus


Query: 60   gataatgtcagaaacacaagaattttggttaatttcagctccaaaccttccaggtgctga 119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52   gataatgtcagaaacacaagaattttggttaatttcagctccaaaccttccaggtgctga 111


Query: 120  catttttgaccaagtcaatcaaaagactgccaaagaaaatagtttatctgaaaacaaaaa 179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112  catttttgaccaagtcaatcaaaagactgccaaagaaaatagtttatctgaaaacaaaaa 171


Query: 180  atttaatacaccagcattaagagttggtactctcaattcattgattacactcaatgatga 239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172  atttaatacaccagcattaagagttggtactctcaattcattgattacactcaatgatga 231


Query: 240  attacaaaaaatcgataccattgtagaatctacaaccaaaaagattgccagacaattagt 299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232  attacaaaaaatcgataccattgtagaatctacaaccaaaaagattgccagacaattagt 291


Query: 300  cgatttagttggaaccaaaccaggtaaagataagagtctttcaatcaatggtcacaccat 359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292  cgatttagttggaaccaaaccaggtaaagataagagtctttcaatcaatggtcacaccat 351


Query: 360  tccacaataccttcaacaatttgcctgggatgatgccaaatataacttaaaattatcatt 419
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352  tccacaataccttcaacaatttgcctgggatgatgccaaatataacttaaaattatcatt 411


Query: 420  acaagaaattgtcgaaaaaatttcatctgcagtctcaaagattgatgatgatttaaaaat 479
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412  acaagaaattgtcgaaaaaatttcatctgcagtctcaaagattgatgatgatttaaaaat 471


Query: 480  caaatcaagtgaatattcaacactttcatcctctgttgcatctgaagaaagaaaagcaag 539
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472  caaatcaagtgaatattcaacactttcatcctctgttgcatctgaagaaagaaaagcaag 531


Query: 540  tggtaatctccaagttcgtactttaaatgacttaattacagctgataatatcgttcaaac 599
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532  tggtaatctccaagttcgtactttaaatgacttaattacagctgataatatcgttcaaac 591


Query: 600  tgattactttacaactgctttcgttgttattccaaaacaatccgaaaaagaatttttagc 659
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592  tgattactttacaactgctttcgttgttattccaaaacaatccgaaaaagaatttttagc 651


Query: 660  ctgttatgaaaccatttcagattttgtacttggaagatcagctaaaagagttgcccaaga 719
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652  ctgttatgaaaccatttcagattttgtacttggaagatcagctaaaagagttgcccaaga 711


Query: 720  taatgattatttcttatacagtgtaattttattcaagaaattctatgaaaactttaaaac 779
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712  taatgattatttcttatacagtgtaattttattcaagaaattctatgaaaactttaaaac 771


Query: 780  taaaatcattgaaaagaaatgggtagtaagagatttcaaattagaagataataaaccaac 839
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772  taaaatcattgaaaagaaatgggtagtaagagatttcaaattagaagataataaaccaac 831


Query: 840  tcaagaaagatcaaaattaacagaagataaaaagaattgtagaacatcattaattcgttg 899
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832  tcaagaaagatcaaaattaacagaagataaaaagaattgtagaacatcattaattcgttg 891


Query: 900  gtgtagattaaatttcccagaggcttttatggcatgggttcacttaaaagttgttagagt 959
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892  gtgtagattaaatttcccagaggcttttatggcatgggttcacttaaaagttgttagagt 951


Query: 960  attcgttgaatctgtacttagatttggtattccattcaacttccaagctatcctcatgaa 1019
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952  attcgttgaatctgtacttagatttggtattccattcaacttccaagctatcctcatgaa 1011


Query: 1020 accacaaaaaggtgccgataaaaaggttcgtgatatacttttcgatcaattcaaatattt 1079
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1012 accacaaaaaggtgccgataaaaaggttcgtgatatacttttcgatcaattcaaatattt 1071


Query: 1080 aggttctgctcatatctctggtaagaatgaaactgatgattccgaaaaattctatccata 1139
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1072 aggttctgctcatatctctggtaagaatgaaactgatgattccgaaaaattctatccata 1131


Query: 1140 tatttccgtttcagtgaattgggaaaattaatataatcattatgactgcaaac 1192
            |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1132 tatttccgtttcagtgaattgggaaaattaatataatcattatgactgcaaac 1184

 Score = 67.9 bits (34), Expect(2) = 0.0
 Identities = 34/34 (100%)
 Strand = Plus / Plus


Query: 9  tttttgtttatttatttcatttataaaaaactac 42
          ||||||||||||||||||||||||||||||||||
Sbjct: 1  tttttgtttatttatttcatttataaaaaactac 34

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,602,328,792
Number of extensions: 104334990
Number of successful extensions: 8728764
Number of sequences better than 10.0: 172
Length of query: 1263
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1239
Effective length of database: 97,308,875,965
Effective search space: 120565697320635
Effective search space used: 120565697320635
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 9
Homology vs Protein 
Query= Contig-U13978-1 (Contig-U13978-1Q) /CSM_Contig/Contig-U13978-1Q.Seq.d
         (1263 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54648) RecName: Full=V-type proton ATPase subunit C;          ...   730   0.0
(Q5XIY6) RecName: Full=V-type proton ATPase subunit C 1-B;      ...   283   9e-75
(Q6P4Y9) RecName: Full=V-type proton ATPase subunit C 1;        ...   281   5e-74
(Q7T385) RecName: Full=V-type proton ATPase subunit C 1-A;      ...   280   6e-74
EF156436_1(EF156436|pid:none) Lutzomyia longipalpis vacuolar ATP...   278   3e-73
BT076831_1(BT076831|pid:none) Caligus rogercresseyi clone crog-e...   278   4e-73
(P21282) RecName: Full=V-type proton ATPase subunit C 1;        ...   276   1e-72
(Q5FVI6) RecName: Full=V-type proton ATPase subunit C 1;        ...   274   4e-72
(P21283) RecName: Full=V-type proton ATPase subunit C 1;        ...   274   6e-72
(Q9Z1G3) RecName: Full=V-type proton ATPase subunit C 1;        ...   273   1e-71
CR861298_1(CR861298|pid:none) Pongo abelii mRNA; cDNA DKFZp459K1...   273   1e-71
CR861092_1(CR861092|pid:none) Pongo abelii mRNA; cDNA DKFZp459K0...   272   2e-71
DQ311199_1(DQ311199|pid:none) Bombyx mori vacuolar ATPase subuni...   270   6e-71
AK006323_1(AK006323|pid:none) Mus musculus adult male testis cDN...   269   1e-70
AC149131_21(AC149131|pid:none) Medicago truncatula chromosome 7 ...   258   3e-67
J05682_1(J05682|pid:none) Human subunit C of V-ATPase (vat C) mR...   254   5e-66
(Q6AYE4) RecName: Full=V-type proton ATPase subunit C 2;        ...   253   1e-65
FN314839_1(FN314839|pid:none) Schistosoma japonicum isolate Anhu...   251   3e-65
AY594319_1(AY594319|pid:none) Rattus norvegicus V-type ATPase C2...   251   5e-65
(Q99L60) RecName: Full=V-type proton ATPase subunit C 2;        ...   249   1e-64
DQ631548_1(DQ631548|pid:none) Triticum aestivum vacuolar proton-...   248   4e-64
(Q612A4) RecName: Full=V-type proton ATPase subunit C;          ...   248   4e-64
AY224442_1(AY224442|pid:none) Oryza sativa (japonica cultivar-gr...   247   7e-64
DQ838492_1(DQ838492|pid:none) Gossypium hirsutum vacuolar H+-ATP...   245   2e-63
FN314840_1(FN314840|pid:none) Schistosoma japonicum isolate Anhu...   244   4e-63
(Q9NDR5) RecName: Full=V-type proton ATPase subunit C 2;        ...   237   6e-61
(Q9V7N5) RecName: Full=V-type proton ATPase subunit C;          ...   219   2e-55
CP000587_404(CP000587|pid:none) Ostreococcus lucimarinus CCE9901...   219   2e-55
BT015974_1(BT015974|pid:none) Drosophila melanogaster RE74713 fu...   219   2e-55
FN357545_5(FN357545|pid:none) Schistosoma mansoni genome sequenc...   218   3e-55
AK298617_1(AK298617|pid:none) Homo sapiens cDNA FLJ52191 complet...   211   3e-53
(Q9HDW6) RecName: Full=V-type proton ATPase subunit C;          ...   209   2e-52
CU928167_51(CU928167|pid:none) Kluyveromyces thermotolerans stra...   199   2e-49
CP001160_692(CP001160|pid:none) Thalassiosira pseudonana CCMP133...   198   3e-49
(Q9SCB9) RecName: Full=V-type proton ATPase subunit C;          ...   197   7e-49
FN392320_258(FN392320|pid:none) Pichia pastoris GS115 chromosome...   195   3e-48
AM270165_62(AM270165|pid:none) Aspergillus niger contig An08c010...   195   3e-48
CR380958_219(CR380958|pid:none) Candida glabrata strain CBS138 c...   194   4e-48
AM920428_828(AM920428|pid:none) Penicillium chrysogenum Wisconsi...   193   1e-47
EU961720_1(EU961720|pid:none) Zea mays clone 237850 unknown mRNA.     192   2e-47
AK226852_1(AK226852|pid:none) Arabidopsis thaliana mRNA for vacu...   191   6e-47
(P31412) RecName: Full=V-type proton ATPase subunit C;          ...   188   4e-46
CU928181_35(CU928181|pid:none) Zygosaccharomyces rouxii strain C...   186   2e-45
CR382127_356(CR382127|pid:none) Yarrowia lipolytica strain CLIB1...   185   3e-45
CU633901_412(CU633901|pid:none) Podospora anserina genomic DNA c...   179   2e-43
FN314842_1(FN314842|pid:none) Schistosoma japonicum isolate Anhu...   173   1e-41
AY587846_1(AY587846|pid:none) Fusarium oxysporum f. sp. lycopers...   172   2e-41
AM502236_56(AM502236|pid:none) Leishmania infantum chromosome 18.     172   2e-41
CT005257_56(CT005257|pid:none) Leishmania major strain Friedlin,...   170   1e-40
AM494955_61(AM494955|pid:none) Leishmania braziliensis chromosom...   169   1e-40
AM910984_71(AM910984|pid:none) Plasmodium knowlesi strain H chro...   166   2e-39
CP000498_388(CP000498|pid:none) Pichia stipitis CBS 6054 chromos...   164   5e-39
FM992689_738(FM992689|pid:none) Candida dubliniensis CD36 chromo...   163   1e-38
CR940348_913(CR940348|pid:none) Theileria annulata strain Ankara...   155   4e-36
BT039808_1(BT039808|pid:none) Zea mays full-length cDNA clone ZM...   146   1e-33
AY810704_1(AY810704|pid:none) Schistosoma japonicum SJCHGC08031 ...   130   8e-29
DQ196178_1(DQ196178|pid:none) Triticum monococcum cultivar DV92 ...   113   2e-23
AF337638_1(AF337638|pid:none) Helicoverpa armigera vacuolar ATPa...   110   8e-23
AX886064_1(AX886064|pid:none) Sequence 1927 from Patent EP1033401.     68   8e-10
AC024762_3(AC024762|pid:none) Caenorhabditis elegans cosmid Y38F...    60   2e-07
AY548906_2(AY548906|pid:none) Antonospora locustae mitochondrial...    59   4e-07
CP001047_350(CP001047|pid:none) Mycoplasma arthritidis 158L3-1, ...    39   0.52
AL844506_99(AL844506|pid:none) Plasmodium falciparum 3D7 chromos...    38   0.68
AM910986_171(AM910986|pid:none) Plasmodium knowlesi strain H chr...    38   0.68
(Q05070) RecName: Full=Uncharacterized protein alr4393; Flags: P...    38   0.68
CP000771_746(CP000771|pid:none) Fervidobacterium nodosum Rt17-B1...    38   0.68
CP000111_1409(CP000111|pid:none) Prochlorococcus marinus str. MI...    37   1.2
AE014188_284(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    37   1.5
AY558488_1(AY558488|pid:none) Saccharomyces cerevisiae clone FLH...    37   2.0
(P53102) RecName: Full=Meiotic nuclear division protein 1;             37   2.0
FM992688_686(FM992688|pid:none) Candida dubliniensis CD36 chromo...    37   2.0
FN392322_300(FN392322|pid:none) Pichia pastoris GS115 chromosome...    36   3.4
AP008210_1502(AP008210|pid:none) Oryza sativa (japonica cultivar...    36   3.4
AY920402_1(AY920402|pid:none) Staphylococcus aureus strain ATCC ...    36   3.4
AC149489_3(AC149489|pid:none) Medicago truncatula chromosome 2 c...    36   3.4
AE002114_13(AE002114|pid:none) Ureaplasma parvum serovar 3 str. ...    36   3.4
(A2XW69) RecName: Full=E3 ubiquitin-protein ligase BRE1-like 1; ...    36   3.4
(Q7XU27) RecName: Full=E3 ubiquitin-protein ligase BRE1-like 1; ...    36   3.4
CP000117_3264(CP000117|pid:none) Anabaena variabilis ATCC 29413,...    35   4.4
CR382137_797(CR382137|pid:none) Debaryomyces hansenii strain CBS...    35   4.4
FJ406948_1(FJ406948|pid:none) Plasmodium reichenowi isolate CDC-...    35   4.4
CP000859_2307(CP000859|pid:none) Desulfococcus oleovorans Hxd3, ...    35   5.7
AL844504_303(AL844504|pid:none) Plasmodium falciparum 3D7 chromo...    35   5.7
(P75139) RecName: Full=Uncharacterized protein MPN_147;  &S73333...    35   5.7
CP001047_113(CP001047|pid:none) Mycoplasma arthritidis 158L3-1, ...    35   5.7
AY338826_1(AY338826|pid:none) Homo sapiens DNA polymerase theta ...    35   7.5
CP001191_3225(CP001191|pid:none) Rhizobium leguminosarum bv. tri...    35   7.5
(O75417) RecName: Full=DNA polymerase theta;          Short=DNA ...    35   7.5
AM269980_119(AM269980|pid:none) Aspergillus niger contig An01c03...    35   7.5
FN357299_50(FN357299|pid:none) Schistosoma mansoni genome sequen...    35   7.5
CR936627_1(CR936627|pid:none) Homo sapiens mRNA; cDNA DKFZp781A0...    35   7.5
(A5FJ06) RecName: Full=Ribosomal RNA large subunit methyltransfe...    35   7.5
CP000013_233(CP000013|pid:none) Borrelia garinii PBi, complete g...    35   7.5
AF043628_1(AF043628|pid:none) Homo sapiens DNA polymerase eta (P...    35   7.5
AE010300_67(AE010300|pid:none) Leptospira interrogans serovar la...    34   9.8
AL035475_52(AL035475|pid:none) Plasmodium falciparum MAL4P2.  &A...    34   9.8
CP000102_315(CP000102|pid:none) Methanosphaera stadtmanae DSM 30...    34   9.8
AE016823_60(AE016823|pid:none) Leptospira interrogans serovar Co...    34   9.8
L18785_1(L18785|pid:none) Plasmodium falciparum DNA polymerase a...    34   9.8
CP001638_2848(CP001638|pid:none) Geobacillus sp. WCH70, complete...    34   9.8
FJ793537_1(FJ793537|pid:none) Avian orthoreovirus isolate ISR526...    34   9.8
CP000742_643(CP000742|pid:none) Methanococcus vannielii SB, comp...    34   9.8
CP000013_723(CP000013|pid:none) Borrelia garinii PBi, complete g...    34   9.8
CP000348_2683(CP000348|pid:none) Leptospira borgpetersenii serov...    34   9.8

>(P54648) RecName: Full=V-type proton ATPase subunit C;
            Short=V-ATPase subunit C; AltName: Full=Vacuolar proton
            pump subunit C;  &L41839_1(L41839|pid:none)
          Length = 368

 Score =  730 bits (1884), Expect = 0.0
 Identities = 368/368 (100%), Positives = 368/368 (100%)
 Frame = +1

Query: 64   MSETQEFWLISAPNLPGADIFDQVNQKTAKENSLSENKKFNTPALRVGTLNSLITLNDEL 243
            MSETQEFWLISAPNLPGADIFDQVNQKTAKENSLSENKKFNTPALRVGTLNSLITLNDEL
Sbjct: 1    MSETQEFWLISAPNLPGADIFDQVNQKTAKENSLSENKKFNTPALRVGTLNSLITLNDEL 60

Query: 244  QKIDTIVESTTKKIARQLVDLVGTKPGKDKSLSINGHTIPQYLQQFAWDDAKYNLKLSLQ 423
            QKIDTIVESTTKKIARQLVDLVGTKPGKDKSLSINGHTIPQYLQQFAWDDAKYNLKLSLQ
Sbjct: 61   QKIDTIVESTTKKIARQLVDLVGTKPGKDKSLSINGHTIPQYLQQFAWDDAKYNLKLSLQ 120

Query: 424  EIVEKISSAVSKIDDDLKIKSSEYSTLSSSVASEERKASGNLQVRTLNDLITADNIVQTD 603
            EIVEKISSAVSKIDDDLKIKSSEYSTLSSSVASEERKASGNLQVRTLNDLITADNIVQTD
Sbjct: 121  EIVEKISSAVSKIDDDLKIKSSEYSTLSSSVASEERKASGNLQVRTLNDLITADNIVQTD 180

Query: 604  YFTTAFVVIPKQSEKEFLACYETISDFVLGRSAKRVAQDNDYFLYSVILFKKFYENFKTK 783
            YFTTAFVVIPKQSEKEFLACYETISDFVLGRSAKRVAQDNDYFLYSVILFKKFYENFKTK
Sbjct: 181  YFTTAFVVIPKQSEKEFLACYETISDFVLGRSAKRVAQDNDYFLYSVILFKKFYENFKTK 240

Query: 784  IIEKKWVVRDFKLEDNKPTQERSKLTEDKKNCRTSLIRWCRLNFPEAFMAWVHLKVVRVF 963
            IIEKKWVVRDFKLEDNKPTQERSKLTEDKKNCRTSLIRWCRLNFPEAFMAWVHLKVVRVF
Sbjct: 241  IIEKKWVVRDFKLEDNKPTQERSKLTEDKKNCRTSLIRWCRLNFPEAFMAWVHLKVVRVF 300

Query: 964  VESVLRFGIPFNFQAILMKPQKGADKKVRDILFDQFKYLGSAHISGKNETDDSEKFYPYI 1143
            VESVLRFGIPFNFQAILMKPQKGADKKVRDILFDQFKYLGSAHISGKNETDDSEKFYPYI
Sbjct: 301  VESVLRFGIPFNFQAILMKPQKGADKKVRDILFDQFKYLGSAHISGKNETDDSEKFYPYI 360

Query: 1144 SVSVNWEN 1167
            SVSVNWEN
Sbjct: 361  SVSVNWEN 368

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,968,310,061
Number of extensions: 38595063
Number of successful extensions: 103782
Number of sequences better than 10.0: 104
Number of HSP's gapped: 103516
Number of HSP's successfully gapped: 107
Length of query: 421
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 290
Effective length of database: 627,191,635
Effective search space: 181885574150
Effective search space used: 181885574150
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.75  gvh: 0.41  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: cytoplasmic
	 28.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U13978-1 is cyt
VS (DIR, S) 2
VH (FL, L) 0
VF (FL, S) 17
AH (FL, L) 0
AF (FL, S) 2
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 5
CH (FL, L) 2
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0