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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U13969-1
Contig ID Contig-U13969-1
Contig update 2002.12.18
Contig sequence 
>Contig-U13969-1 (Contig-U13969-1Q) /CSM_Contig/Contig-U13969-1Q.Seq.d
AATTTAAATTTTTTTTTTTCTTTATNTAAATAGTATTAAAACATTAATTA
TAATATTTTATTTCATTTTATCTACATTATTAAAAAAAGGATAAGAAACA
AACTATTAAAATCCATTATAAATATTTTATAAAAAATAAATAACAACAAA
AAAAAATAAAAAATGGTAGAATTATATGATACATTTGGAATTAAAATTTA
TGTTGATCATAATAAAACAACTATAAAAGGTATTGATTTACAAAAAAAGT
TGGCAAAATTTTTTTTAAAGAAAAATATTCCACATTCATTAATTTCAATT
TTTGATATTGCAAATAATTTTGAAATTCAAAGAAGAATTAAAGAACATTC
TAAAAAAATACCAAGATATCCATATATTGAAATTAATGGTCAATTATGGG
GTGAAGGTATTGAAGTTGAAGAAAGTGAAGAAATGGATCAAGTTTTAAAA
GATTTAATAAATTATAAAATCCAAGGAACTGGAGAACAAGAAAATAATAG
TATTGTTGATGCATTCATTGCAGGTAATACAATGGTAGCAGTTGAACCTG
AAACTTTATCAATTGGTTATTTGGATTCAGGTTTAAATCTTATTGAATGG
TTATCACTTGGAATCGTTTCAAATATTTGGAATCCATGGGCTGTACCAAT
CGAACCATTGGATAAAGAATCTGATTTTGAATTTGATGTTATTCGTACAA
ATTGGTATGGTAGACATCAATTTAGAAAATATAGATTCACTCCTTCTGAA
ATTGTTAGAATAAATAGTCAATCTGTCAAAGCAACTCTATATTATAAAGA
TATTCAACAACTTGATCAAACAAATAAGAAAAATATTATTATAAAGATTT
TAAATGGTGAAGATCAATATATTGAAGCATTAGAGGATGATATAATCAAA
ATGATAGAAATTATAACATCAAGAGCATATTTAGTTCCAAATGGTGAAAA
TCAATGGGTTTCAAAAATTACAATTTAAATATAGTGAAAGTGGGAGTTAA
ACACTTTGCACGTGCATATGTATATATAAACACTATATATTTATAAATAT
AATGTGAGAAACTAATCAAAAGGAAATTCATAAACCACAAATGTTTGATT
TTCTTTTTATTAAATCAAACAAAACTATATATTTTTATCTATTTATAAAT
AAAATAAAGAAACTATTTCTTCCTTTTTAATTTTTCTCAACAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAA
Gap no gap
Contig length 1226
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 2856668
End point 2857860
Strand (PLUS/MINUS) PLUS
Number of clones 10
Number of EST 12
Link to clone list U13969
List of clone(s) 

est1=CHB795F,1,166
est2=AFK357E,10,1129
est3=SFD284E,26,1178
est4=SSA129E,30,1227
est5=CFB222F,31,619
est6=SFJ338E,34,1164
est7=SSI559E,38,1206
est8=VFF733E,60,1177
est9=CHB795Z,468,1107
est10=CHB895Z,494,1110
est11=SSE196Z,647,1194
est12=CFB222Z,907,1068
Translated Amino Acid sequence 
nlnfffslxk*y*ninynilfhfiyiikkrirnkllksiinil*kinnnkkk*KMVELYD
TFGIKIYVDHNKTTIKGIDLQKKLAKFFLKKNIPHSLISIFDIANNFEIQRRIKEHSKKI
PRYPYIEINGQLWGEGIEVEESEEMDQVLKDLINYKIQGTGEQENNSIVDAFIAGNTMVA
VEPETLSIGYLDSGLNLIEWLSLGIVSNIWNPWAVPIEPLDKESDFEFDVIRTNWYGRHQ
FRKYRFTPSEIVRINSQSVKATLYYKDIQQLDQTNKKNIIIKILNGEDQYIEALEDDIIK
MIEIITSRAYLVPNGENQWVSKITI*i**kwelntlhvhmyi*tlyiykynvrn*skgns
*ttnv*fsfy*ikqnyiflsiyk*nketissfliflnkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
nlnfffslxk*y*ninynilfhfiyiikkrirnkllksiinil*kinnnkkk*KMVELYD
TFGIKIYVDHNKTTIKGIDLQKKLAKFFLKKNIPHSLISIFDIANNFEIQRRIKEHSKKI
PRYPYIEINGQLWGEGIEVEESEEMDQVLKDLINYKIQGTGEQENNSIVDAFIAGNTMVA
VEPETLSIGYLDSGLNLIEWLSLGIVSNIWNPWAVPIEPLDKESDFEFDVIRTNWYGRHQ
FRKYRFTPSEIVRINSQSVKATLYYKDIQQLDQTNKKNIIIKILNGEDQYIEALEDDIIK
MIEIITSRAYLVPNGENQWVSKITI*i**kwelntlhvhmyi*tlyiykynvrn*skgns
*ttnv*fsfy*ikqnyiflsiyk*nketissfliflnkkkkkkkkkkk


Frame B:
i*iffflyxnsiktliiifyfilstllkkg*etny*npl*ifykk*ittkknkkw*nymi
hlelkfmliiikql*kvliykkswqnff*rkifhih*fqflilqiilkfkeelknilkky
qdihilklmvnygvkvlklkkvkkwikf*ki**iikskelenkkiivllmhslqviqw*q
lnlklyqlviwiqv*illngyhlesfqifgihglyqsnhwiknlilnlmlfvqigmvdin
lenidslllklle*ivnlskqlyiikifnnlikqirkill*rf*mvkinilkh*rmi*sk
**kl*hqehi*fqmvkingfqklqfkysesgs*tlctciciykhyifinim*etnqkeih
kpqmfdflfiksnktiyfylfinkikklflpf*ffstkkkkkkkkkkk


Frame C:
fkfffffx*ivlkh*l*yfisfylhy*kkdkkqtikihykyfiknk*qqkkikngrii*y
iwn*nlc*s**nnykry*ftkkvgkiffkekystfinfnf*yck*f*nskkn*rtf*knt
kisiy*n*wsimg*ry*s*rk*rngssfkrfnkl*nprnwrtrk**yc*cihcr*yngss
*t*nfinwlfgfrfksy*mvitwnrfkylesmgctnrtig*ri*f*i*cysyklvw*tsi
*ki*ihsf*nc*nk*sicqsnsil*rystt*snk*ekyyykdfkw*rsiy*sirg*ynqn
drnyniksifsskw*ksmgfknynlnivkvgvkhfarayvyintiyl*i*ceklikrkfi
nhkcliffllnqtklyifiyl*ik*rnyfflfnfsqqkkkkkkkkkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U13969-1 (Contig-U13969-1Q)
/CSM_Contig/Contig-U13969-1Q.Seq.d
         (1226 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13969-1 (Contig-U13969-1Q) /CSM_Contig/Conti...  1558  0.0
Contig-U14815-1 (Contig-U14815-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U12799-1 (Contig-U12799-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U12163-1 (Contig-U12163-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U14811-1 (Contig-U14811-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U11708-1 (Contig-U11708-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U10683-1 (Contig-U10683-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U09133-1 (Contig-U09133-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U04904-1 (Contig-U04904-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U14248-1 (Contig-U14248-1Q) /CSM_Contig/Conti...    34  0.34

>Contig-U13969-1 (Contig-U13969-1Q) /CSM_Contig/Contig-U13969-1Q.Seq.d
          Length = 1226

 Score = 1558 bits (786), Expect = 0.0
 Identities = 830/852 (97%)
 Strand = Plus / Plus

                                                                        
Query: 164  tggtagaattatatgatacatttggaattaaaatttatgttgatcataataaaacaacta 223
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164  tggtagaattatatgatacatttggaattaaaatttatgttgatcataataaaacaacta 223

                                                                        
Query: 224  taaaaggtattgatttacnnnnnnngttggcaaaannnnnnnnaaagaaaaatattccac 283
            ||||||||||||||||||       ||||||||||        |||||||||||||||||
Sbjct: 224  taaaaggtattgatttacaaaaaaagttggcaaaattttttttaaagaaaaatattccac 283

                                                                        
Query: 284  attcattaatttcaatttttgatattgcaaataattttgaaattcaaagaagaattaaag 343
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284  attcattaatttcaatttttgatattgcaaataattttgaaattcaaagaagaattaaag 343

                                                                        
Query: 344  aacattctnnnnnnntaccaagatatccatatattgaaattaatggtcaattatggggtg 403
            ||||||||       |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344  aacattctaaaaaaataccaagatatccatatattgaaattaatggtcaattatggggtg 403

                                                                        
Query: 404  aaggtattgaagttgaagaaagtgaagaaatggatcaagttttaaaagatttaataaatt 463
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404  aaggtattgaagttgaagaaagtgaagaaatggatcaagttttaaaagatttaataaatt 463

                                                                        
Query: 464  ataaaatccaaggaactggagaacaagaaaataatagtattgttgatgcattcattgcag 523
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464  ataaaatccaaggaactggagaacaagaaaataatagtattgttgatgcattcattgcag 523

                                                                        
Query: 524  gtaatacaatggtagcagttgaacctgaaactttatcaattggttatttggattcaggtt 583
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524  gtaatacaatggtagcagttgaacctgaaactttatcaattggttatttggattcaggtt 583

                                                                        
Query: 584  taaatcttattgaatggttatcacttggaatcgtttcaaatatttggaatccatgggctg 643
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584  taaatcttattgaatggttatcacttggaatcgtttcaaatatttggaatccatgggctg 643

                                                                        
Query: 644  taccaatcgaaccattggataaagaatctgattttgaatttgatgttattcgtacaaatt 703
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644  taccaatcgaaccattggataaagaatctgattttgaatttgatgttattcgtacaaatt 703

                                                                        
Query: 704  ggtatggtagacatcaatttagaaaatatagattcactccttctgaaattgttagaataa 763
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704  ggtatggtagacatcaatttagaaaatatagattcactccttctgaaattgttagaataa 763

                                                                        
Query: 764  atagtcaatctgtcaaagcaactctatattataaagatattcaacaacttgatcaaacaa 823
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764  atagtcaatctgtcaaagcaactctatattataaagatattcaacaacttgatcaaacaa 823

                                                                        
Query: 824  ataagaaaaatattattataaagattttaaatggtgaagatcaatatattgaagcattag 883
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824  ataagaaaaatattattataaagattttaaatggtgaagatcaatatattgaagcattag 883

                                                                        
Query: 884  aggatgatataatcaaaatgatagaaattataacatcaagagcatatttagttccaaatg 943
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884  aggatgatataatcaaaatgatagaaattataacatcaagagcatatttagttccaaatg 943

                                                                        
Query: 944  gtgaaaatcaatgggtttcaaaaattacaatttaaatatagtgaaagtgggagttaaaca 1003
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 944  gtgaaaatcaatgggtttcaaaaattacaatttaaatatagtgaaagtgggagttaaaca 1003

                        
Query: 1004 ctttgcacgtgc 1015
            ||||||||||||
Sbjct: 1004 ctttgcacgtgc 1015


 Score =  278 bits (140), Expect = 1e-74
 Identities = 140/140 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1052 atgtgagaaactaatcaaaaggaaattcataaaccacaaatgtttgattttctttttatt 1111
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1052 atgtgagaaactaatcaaaaggaaattcataaaccacaaatgtttgattttctttttatt 1111

                                                                        
Query: 1112 aaatcaaacaaaactatatatttttatctatttataaataaaataaagaaactatttctt 1171
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1112 aaatcaaacaaaactatatatttttatctatttataaataaaataaagaaactatttctt 1171

                                
Query: 1172 cctttttaatttttctcaac 1191
            ||||||||||||||||||||
Sbjct: 1172 cctttttaatttttctcaac 1191


 Score =  117 bits (59), Expect = 3e-26
 Identities = 62/62 (100%)
 Strand = Plus / Plus

                                                                      
Query: 20 ctttatntaaatagtattaaaacattaattataatattttatttcattttatctacatta 79
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20 ctttatntaaatagtattaaaacattaattataatattttatttcattttatctacatta 79

            
Query: 80 tt 81
          ||
Sbjct: 80 tt 81


>Contig-U14815-1 (Contig-U14815-1Q) /CSM_Contig/Contig-U14815-1Q.Seq.d
          Length = 1163

 Score = 40.1 bits (20), Expect = 0.006
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 574 gattcaggtttaaatcttat 593
           ||||||||||||||||||||
Sbjct: 265 gattcaggtttaaatcttat 284


>Contig-U12799-1 (Contig-U12799-1Q) /CSM_Contig/Contig-U12799-1Q.Seq.d
          Length = 2583

 Score = 40.1 bits (20), Expect = 0.006
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 1126 tatatatttttatctatttataaataaa 1153
            ||||||||| ||| ||||||||||||||
Sbjct: 137  tatatatttatatatatttataaataaa 164


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 28,434
Number of Sequences: 6905
Number of extensions: 28434
Number of successful extensions: 3662
Number of sequences better than 10.0: 455
length of query: 1226
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1210
effective length of database: 5,564,391
effective search space: 6732913110
effective search space used: 6732913110
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.16
Homology vs DNA 
Query= Contig-U13969-1 (Contig-U13969-1Q) /CSM_Contig/Contig-U13969-1Q.Seq.d
         (1226 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ399870) Dictyostelium discoideum cDNA clone:dds7g22, 3' e...  1152   0.0    2
(BJ345068) Dictyostelium discoideum cDNA clone:dda21b15, 3' ...  1130   0.0    2
(BJ377793) Dictyostelium discoideum cDNA clone:ddc25n23, 3' ...  1084   0.0    2
(BJ401790) Dictyostelium discoideum cDNA clone:dds19l09, 3' ...  1049   0.0    2
(BJ428512) Dictyostelium discoideum cDNA clone:ddv12b09, 3' ...  1047   0.0    2
(BJ377794) Dictyostelium discoideum cDNA clone:ddc25n24, 3' ...  1033   0.0    2
(AU075927) Dictyostelium discoideum slug cDNA, clone SSA129.      922   0.0    2
(BJ359893) Dictyostelium discoideum cDNA clone:ddc3k06, 5' e...   513   0.0    5
(C24631) Dictyostelium discoideum slug cDNA, clone SL-X029.       458   0.0    4
(AU037708) Dictyostelium discoideum slug cDNA, clone SSE196.      726   0.0    2
(C90459) Dictyostelium discoideum slug cDNA, clone SSI559.        724   0.0    2
(BJ327718) Dictyostelium discoideum cDNA clone:dda21b15, 5' ...   408   0.0    4
(BJ388087) Dictyostelium discoideum cDNA clone:dds7g22, 5' e...   406   0.0    4
(BJ389608) Dictyostelium discoideum cDNA clone:dds19l09, 5' ...   418   0.0    3
(BJ410363) Dictyostelium discoideum cDNA clone:ddv12b09, 5' ...   402   0.0    3
(AU073860) Dictyostelium discoideum slug cDNA, clone SSI559.      155   6e-49  2
(BJ373454) Dictyostelium discoideum cDNA clone:ddc3k06, 3' e...   168   3e-37  1
(BJ363293) Dictyostelium discoideum cDNA clone:ddc25n23, 5' ...    96   4e-15  1
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    36   8e-06  21
(AJ010592) Guillardia theta DNA for complete sequence of nuc...    42   3e-05  12
(DQ866050) Simosyrphus grandicornis mitochondrion, complete ...    54   1e-04  4
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    36   4e-04  13
(AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1...    44   0.001  13
(AL844506) Plasmodium falciparum chromosome  7.                    38   0.003  15
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    34   0.005  14
(CP000246) Clostridium perfringens ATCC 13124, complete genome.    36   0.007  19
(AE017308) Mycoplasma mobile 163K complete genome.                 44   0.008  16
(AY573115) Episyrphus balteatus 16S ribosomal RNA gene, part...    54   0.013  1
(AL929354) Plasmodium falciparum strain 3D7, chromosome 5, s...    34   0.013  15
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6...    46   0.026  11
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet...    40   0.029  19
(AL031745) Plasmodium falciparum DNA from MAL1P2.                  32   0.043  13
(AM460409) Vitis vinifera, whole genome shotgun sequence, co...    48   0.050  4
(CR388406) Zebrafish DNA sequence from clone CH211-288H2 in ...    52   0.051  1
(AY123344) Eristalis tenax 16S ribosomal RNA gene, partial s...    52   0.051  1
(CU914787) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    52   0.051  1
(CU914776) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    52   0.051  1
(EK580666) 1095521694406 Global-Ocean-Sampling_GS-32-01-01-1...    48   0.063  2
(ER578051) 1093015821169 Global-Ocean-Sampling_GS-36-01-01-2...    48   0.071  2
(AE016826) Buchnera aphidicola str. Bp (Baizongia pistaciae)...    32   0.084  15
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    34   0.12   12
(AE014843) Plasmodium falciparum 3D7 chromosome 11 section 8...    36   0.13   11
(AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s...    42   0.16   13
(V00695) Yeast mitochondrial tRNA genes (several, map positi...    34   0.17   3
(AL109814) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    34   0.18   10
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    40   0.18   17
(AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s...    36   0.19   11
(BZ068435) ljt34h11.b1 B.oleracea002 Brassica oleracea genom...    46   0.19   2
(BH578219) BOHCX06TF BOHC Brassica oleracea genomic clone BO...    46   0.22   2
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    32   0.23   14
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen...    44   0.24   19
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975...    32   0.28   9
(AY573137) Temnosira reducta 16S ribosomal RNA gene, partial...    48   0.33   2
(AE017243) Mycoplasma hyopneumoniae J, complete genome.            34   0.43   18
(L36887) Saccharomyces cerevisiae mitochondrion transfer RNA...    34   0.45   3
(EJ986183) 1093023012512 Global-Ocean-Sampling_GS-30-02-01-1...    34   0.51   3
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    34   0.56   20
(CA356728) 628972 NCCCWA 1RT Oncorhynchus mykiss cDNA clone ...    34   0.57   2
(EJ975463) 1093022114657 Global-Ocean-Sampling_GS-30-02-01-1...    34   0.63   3
(AE017263) Mesoplasma florum L1 complete genome.                   34   0.74   20
(BZ018286) oeh01b10.b1 B.oleracea002 Brassica oleracea genom...    36   0.76   2
(BH459209) BOGQB19TR BOGQ Brassica oleracea genomic clone BO...    36   0.77   2
(CU462871) Zebrafish DNA sequence from clone CH211-28D11 in ...    48   0.79   1
(CT027609) Zebrafish DNA sequence from clone DKEY-57K17 in l...    48   0.79   1
(CR383671) Zebrafish DNA sequence from clone CH211-127B6 in ...    48   0.79   1
(BX942821) Zebrafish DNA sequence from clone CH211-132N12 in...    48   0.79   1
(BX936384) Zebrafish DNA sequence from clone CH211-76M11 in ...    48   0.79   1
(BX901892) Zebrafish DNA sequence from clone CH211-218H8 in ...    48   0.79   1
(BX664606) Zebrafish DNA sequence from clone CH211-171L17 in...    48   0.79   1
(BX649516) Zebrafish DNA sequence from clone DKEY-51D8 in li...    48   0.79   1
(BX000477) Zebrafish DNA sequence from clone CH211-59D8 in l...    48   0.79   1
(AM427753) Vitis vinifera contig VV78X181936.8, whole genome...    48   0.79   1
(AC216918) Populus trichocarpa clone POP070-F20, complete se...    48   0.79   1
(AC211806) Populus trichocarpa clone POP094-K03, complete se...    48   0.79   1
(AY573138) Toxoneura superba 16S ribosomal RNA gene, partial...    48   0.79   1
(AY573125) Palloptera ambusta 16S ribosomal RNA gene, partia...    48   0.79   1
(AY083455) Melanoplus bowditchi NADH dehydrogenase subunit I...    48   0.79   1
(AY083411) Melanoplus infantilis isolate 4 NADH dehydrogenas...    48   0.79   1
(AY083407) Melanoplus infantilis isolate 3 NADH dehydrogenas...    48   0.79   1
(AF317466) Melanoplus alpinus NADH dehydrogenase subunit II ...    48   0.79   1
(AF317436) Melanoplus dawsoni isolate 1 NADH dehydrogenase s...    48   0.79   1
(AF317432) Melanoplus kennicottii NADH dehydrogenase subunit...    48   0.79   1
(AF317156) Melanoplus confusus NADH dehydrogenase subunit II...    48   0.79   1
(AF317154) Melanoplus infantilis NADH dehydrogenase subunit ...    48   0.79   1
(AF260547) Hypochlora alba NADH dehydrogenase subunit II (ND...    48   0.79   1
(AF227311) Bohemanella frigida Northwest territories NADH de...    48   0.79   1
(AF227308) Bohemanella frigida NADH dehydrogenase subunit II...    48   0.79   1
(AF227305) Bohemanella frigida East Asia NADH dehydrogenase ...    48   0.79   1
(AF227302) Bohemanella frigida 1 NADH dehydrogenase subunit ...    48   0.79   1
(AF227281) Melanoplus infantilis NADH dehydrogenase subunit ...    48   0.79   1
(AC113352) Homo sapiens chromosome 5 clone CTD-2613O8, compl...    48   0.79   1
(AC008618) Homo sapiens chromosome 5 clone CTB-146E17, compl...    48   0.79   1
(CU914723) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.79   1
(CU896585) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   0.79   1
(CU694230) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   0.79   1
(CT027784) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    48   0.79   1
(CR933099) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   0.79   1
(BX942834) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   0.79   1
(AC201212) Strongylocentrotus purpuratus clone R3-15D9, WORK...    48   0.79   1
(AC175990) Strongylocentrotus purpuratus clone R3-17I8, WORK...    48   0.79   1

>(BJ399870) Dictyostelium discoideum cDNA clone:dds7g22, 3' end,
            single read.
          Length = 747

 Score = 1152 bits (581), Expect(2) = 0.0
 Identities = 584/585 (99%)
 Strand = Plus / Minus


Query: 431  aaatggatcaagttttaaaagatttaataaattataaaatccaaggaactggagaacaag 490
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747  aaatggatcaagttttaaaagatttaataaattataaaatccaaggaactggagaacaag 688


Query: 491  aaaataatagtattgttgatgcattcattgcaggtaatacaatggtagcagttgaacctg 550
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687  aaaataatagtattgttgatgcattcattgcaggtaatacaatggtagcagttgaacctg 628


Query: 551  aaactttatcaattggttatttggattcaggtttaaatcttattgaatggttatcacttg 610
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627  aaactttatcaattggttatttggattcaggtttaaatcttattgaatggttatcacttg 568


Query: 611  gaatcgtttcaaatatttggaatccatgggctgtaccaatcgaaccattggataaagaat 670
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567  gaatcgtttcaaatatttggaatccatgggctgtaccaatcgaaccattggataaagaat 508


Query: 671  ctgattttgaatttgatgttattcgtacaaattggtatggtagacatcaatttagaaaat 730
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 507  ctgattttgaatttgatgttattcgtacaaattggtatggtaggcatcaatttagaaaat 448


Query: 731  atagattcactccttctgaaattgttagaataaatagtcaatctgtcaaagcaactctat 790
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447  atagattcactccttctgaaattgttagaataaatagtcaatctgtcaaagcaactctat 388


Query: 791  attataaagatattcaacaacttgatcaaacaaataagaaaaatattattataaagattt 850
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387  attataaagatattcaacaacttgatcaaacaaataagaaaaatattattataaagattt 328


Query: 851  taaatggtgaagatcaatatattgaagcattagaggatgatataatcaaaatgatagaaa 910
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327  taaatggtgaagatcaatatattgaagcattagaggatgatataatcaaaatgatagaaa 268


Query: 911  ttataacatcaagagcatatttagttccaaatggtgaaaatcaatgggtttcaaaaatta 970
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267  ttataacatcaagagcatatttagttccaaatggtgaaaatcaatgggtttcaaaaatta 208


Query: 971  caatttaaatatagtgaaagtgggagttaaacactttgcacgtgc 1015
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207  caatttaaatatagtgaaagtgggagttaaacactttgcacgtgc 163

 Score = 83.8 bits (42), Expect(2) = 0.0
 Identities = 42/42 (100%)
 Strand = Plus / Minus


Query: 1052 atgtgagaaactaatcaaaaggaaattcataaaccacaaatg 1093
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126  atgtgagaaactaatcaaaaggaaattcataaaccacaaatg 85

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,350,337,480
Number of extensions: 90871030
Number of successful extensions: 8469487
Number of sequences better than 10.0: 343
Length of query: 1226
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1202
Effective length of database: 97,308,875,965
Effective search space: 116965268909930
Effective search space used: 116965268909930
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 9
Homology vs Protein 
Query= Contig-U13969-1 (Contig-U13969-1Q) /CSM_Contig/Contig-U13969-1Q.Seq.d
         (1226 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000514_675(CP000514|pid:none) Marinobacter aquaeolei VT8, comp...    36   2.5

>CP000514_675(CP000514|pid:none) Marinobacter aquaeolei VT8,
           complete genome.
          Length = 438

 Score = 36.2 bits (82), Expect = 2.5
 Identities = 29/126 (23%), Positives = 44/126 (34%), Gaps = 23/126 (18%)
 Frame = +1

Query: 451 DLINYKIQGTGEQENNSIVDAFIAGNTMVAVEPETLSIGYLDSGLNLIEWLSLGIVS--- 621
           D   Y   G G   N S      A N   A+  E ++ G  D  ++   WLS+ +++
Sbjct: 151 DAYGYLSLGAGYDSNLSATPEDSASNQGSALG-EVVAAGSFDYAMDADRWLSMDLIAFAR 209

Query: 622 --------------------NIWNPWAVPIEPLDKESDFEFDVIRTNWYGRHQFRKYRFT 741
                                 W PWAV + P+   S  + D + T W      R
Sbjct: 210 HYVEDGDYDQQLLQARFGVMRSWGPWAVGVRPVVSRSWLDGDSLETRWGAELLARSAECL 269

Query: 742 PSEIVR 759
           P+E +R
Sbjct: 270 PAEDLR 275

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,559,348,104
Number of extensions: 28050606
Number of successful extensions: 55158
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55144
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 277
Effective length of database: 627,191,635
Effective search space: 173732082895
Effective search space used: 173732082895
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.75  gvh: 0.29  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: nuclear
	 24.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for Contig-U13969-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 3
SH (FL, L) 0
SF (FL, S) 2
CH (FL, L) 2
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0