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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U13968-1
Contig ID Contig-U13968-1
Contig update 2002.12.18
Contig sequence 
>Contig-U13968-1 (Contig-U13968-1Q) /CSM_Contig/Contig-U13968-1Q.Seq.d
ATTATTAAATATAAAAAATGAATAGATTAATATTTATATTTATAACAATT
TTATTTGTAGAATTAATTTTTGGATTCCATACTGGTGATATTTCAAAAAA
ACAAGAGATTCAAAAAGCATCTTTTCAATTTCTTACAGCTGCTGCCTATA
GAAATGCTCAAAAAGATAGAGAATGGTGTGAAGATGATAAAATCAAAGGC
GGAAGACCATACCAATGGAATGAATATAGAGGAATGGTAATCAACTATTT
GGATCTATATGTTGCTCTTCAATTCGATCCTGAATGTAATTCAAATGTTG
CAACTTTAAGAAGTTTATTTGTAAATCAATTGGCTCAACCTGATCCATAT
CCAGTGAATGCAACTTGGTGGGATTCCGTATTTTTACCAACCGCTTTGAA
TGCTTTCTCATGTGGCTTTAATGGCAGTAAAATAGAGGACCACGAATTTG
TATCTGATGATCTTTTAGAAAACTTTGATAATGATAAAATGAAACAAGAT
ATTTGGTATATGATTGGTACTTATATGACAAGTATTTATAAGCAAAGAGA
AAACATTAATAGAAGATTAGATTTTGATGCTGGTCTATATATTCCATTCC
TTGATAAATATACTGGTGGTGATTATACAAAAACTCAGCAAATGAGAGTT
GGCTTCCCAACATACCTTGGTCGTTCATTGTGGGCCGTTTTCCATATTAT
TGCTCAAAGAGTTTCAGATTCGTCATGTGAAAGTAGTGGTAATAGTACTA
CAACTGTTTATACAAGTTTAACTGAAAAGTTTAAAAATTTCATGGTCTAT
TTCCCATTAAATCATGCATGTCCATTCTGTAGAGAACATATGATTTCAAA
AGTATTAGTAAACGATAGATATGCCCGTGATAGTTACTCTAGTGAGGCAG
TTCGTTTCTTCCCAATCGAACATTTATTAATGGGAGGAACAGGTGGTGAC
TTAATTGCAAAACTTTCAACTGTAAGAGCTGATGATAAACGTTCAATTGC
CGCCTTTTTCTGGAAACTTCACAATGCTGTGACCTCTTCAGTTGAACAGG
GCTGTCAATGTTTTACTGAAGAAATTGAAGATATTGATCCATACCATTGT
GAATTTAAATCAAGTGTATCAATTCAAACACGTTATCCAAGACAACAAAG
ATCATATCCATTTGCAAAGAGATTTGAATTTATTTTAAATGAAAAACATA
ATTATACACTTTTCAAAGAAACTAGAAAACAATTTATTAATATTACTTCT
GAAATTAATAAATTAGATACAGTTCAAATTAGAATAGAATTGTTTAAATT
TTGGAATGATTCAAGTGTAAAAATTAGTGAAGATACTCAAAACAAAATTG
ATCAATTAATGTTATTAATTAATAATATGACTCAATTGTTTTTAGATACC
CCAGTTCTTTCCGAGGCATACTCTTTAGTAAATTCAACATTGAATTGTAC
ACTTACTGAAGAATACTTTGCATCCATTAACCTATCAGATGTTGAAGCTC
CAAACCTTTCAATTCCAAGAACACCAGAACGTTGTAGTAATGAAACTAAA
TTATCAGCATGTGAAGCTCAATATTTTGTTGAACCAAAGGTAGTTAAAAA
GGATGAAAATAGTTCTTCAAATAAACTATCCATTGGTTGGCTCTTTATTT
CAATTCTAGTTATTAATTTAATTATTTTTGTACTTTAATTTTTTAATGTA
TTAAAAAATTATTTAATAAATAAAATTTTCAAAAAATTAAAAAAAAAAA
Gap no gap
Contig length 1749
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 503048
End point 501310
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 3
Link to clone list U13968
List of clone(s) 

est1=AFK283F,1,637
est2=SSK505E,32,1750
est3=AFK283Z,1011,1657
Translated Amino Acid sequence 
y*i*KMNRLIFIFITILFVELIFGFHTGDISKKQEIQKASFQFLTAAAYRNAQKDREWCE
DDKIKGGRPYQWNEYRGMVINYLDLYVALQFDPECNSNVATLRSLFVNQLAQPDPYPVNA
TWWDSVFLPTALNAFSCGFNGSKIEDHEFVSDDLLENFDNDKMKQDIWYMIGTYMTSIYK
QRENINRRLDFDAGLYIPFLDKYTGGDYTKTQQMRVGFPTYLGRSLWAVFHIIAQRVSDS
SCESSGNSTTTVYTSLTEKFKNFMVYFPLNHACPFCREHMISKVLVNDRYARDSYSSEAV
RFFPIEHLLMGGTGGDLIAKLSTVRADDKRSIAAFFWKLHNAVTSSVEQGCQCFTEEIED
IDPYHCEFKSSVSIQTRYPRQQRSYPFAKRFEFILNEKHNYTLFKETRKQFINITSEINK
LDTVQIRIELFKFWNDSSVKISEDTQNKIDQLMLLINNMTQLFLDTPVLSEAYSLVNSTL
NCTLTEEYFASINLSDVEAPNLSIPRTPERCSNETKLSACEAQYFVEPKVVKKDENSSSN
KLSIGWLFISILVINLIIFVL*ffnvlknylinkifkklkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
iikykk*id*ylyl*qfyl*n*fldsilvifqknkrfkkhlfnflqllpiemlkkiengv
kmikskaedhtngmnieew*stiwiymllfnsilnviqmlql*evyl*inwlnlihiq*m
qlggipyfyqpl*mlshvalmavk*rttnlylmif*ktlimik*nkifgi*lvli*qvfi
skektlied*ilmlvyifhslinilvviiqklsk*elasqhtlvvhcgpfsilllkefqi
rhvkvvvivlqlfiqv*lkslkiswsish*imhvhsveni*fqky**tidmpvivtlvrq
fvssqsniy*weeqvvt*lqnfql*elminvqlppfsgnftml*plqlnravnvllkklk
ilihtivnlnqvyqfkhviqdnkdhihlqrdlnlf*mkniiihfskklennllilllkli
n*iqfkle*nclnfgmiqv*klvkilktklin*cy*lii*lncf*ipqffprhtl**iqh
*ivhllkntlhpltyqmlklqtfqfqehqnvvvmklnyqhvklnillnqr*lkrmkivlq
inyplvgslfqf*lli*lflyfnflmy*kii**ikfskn*kkk


Frame B:
llnikne*iniyiynnficrinfwipyw*yfkktrdsksifsisysccl*kcskr*rmv*
r**nqrrktipme*i*rngnqlfgsiccssirs*m*fkccnfkkficksigst*sissec
nlvgfriftnrfecflmwl*wq*nrgprici**sfrkl****netrylvydwylydkyl*
akrkh**kirf*cwsiysip**iyww*lyknsaneswlpnipwsfivgrfpyycsksfrf
vm*k*w**yynclykfn*kv*kfhglfpikscmsil*rtydfksiskr*icp**ll**gs
sflpnrtfingrnrw*lncktfncks***tfncrlfletsqccdlfs*tglsmfy*rn*r
y*sipl*i*ikcinsntlskttkiisickei*iyfk*kt*lytfqrn*ktiy*yyf*n**
iryssn*nriv*ile*fkckn**ryskqn*sinvin**ydsivfrypssfrgilfskfni
elyty*rilcih*pirc*sskpfnskntrtl***n*iism*ssifc*tkgs*kg*k*ffk
*tihwlalyfnssy*fnyfctlif*cikklfnk*nfqkikkk


Frame C:
y*i*KMNRLIFIFITILFVELIFGFHTGDISKKQEIQKASFQFLTAAAYRNAQKDREWCE
DDKIKGGRPYQWNEYRGMVINYLDLYVALQFDPECNSNVATLRSLFVNQLAQPDPYPVNA
TWWDSVFLPTALNAFSCGFNGSKIEDHEFVSDDLLENFDNDKMKQDIWYMIGTYMTSIYK
QRENINRRLDFDAGLYIPFLDKYTGGDYTKTQQMRVGFPTYLGRSLWAVFHIIAQRVSDS
SCESSGNSTTTVYTSLTEKFKNFMVYFPLNHACPFCREHMISKVLVNDRYARDSYSSEAV
RFFPIEHLLMGGTGGDLIAKLSTVRADDKRSIAAFFWKLHNAVTSSVEQGCQCFTEEIED
IDPYHCEFKSSVSIQTRYPRQQRSYPFAKRFEFILNEKHNYTLFKETRKQFINITSEINK
LDTVQIRIELFKFWNDSSVKISEDTQNKIDQLMLLINNMTQLFLDTPVLSEAYSLVNSTL
NCTLTEEYFASINLSDVEAPNLSIPRTPERCSNETKLSACEAQYFVEPKVVKKDENSSSN
KLSIGWLFISILVINLIIFVL*ffnvlknylinkifkklkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U13968-1 (Contig-U13968-1Q)
/CSM_Contig/Contig-U13968-1Q.Seq.d
         (1749 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13968-1 (Contig-U13968-1Q) /CSM_Contig/Conti...  3211  0.0
Contig-U04937-1 (Contig-U04937-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U12027-1 (Contig-U12027-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U09578-1 (Contig-U09578-1Q) /CSM_Contig/Conti...    38  0.031
Contig-U06544-1 (Contig-U06544-1Q) /CSM_Contig/Conti...    38  0.031
Contig-U01508-1 (Contig-U01508-1Q) /CSM_Contig/Conti...    38  0.031
Contig-U14091-1 (Contig-U14091-1Q) /CSM_Contig/Conti...    36  0.12
Contig-U13879-1 (Contig-U13879-1Q) /CSM_Contig/Conti...    36  0.12
Contig-U13181-1 (Contig-U13181-1Q) /CSM_Contig/Conti...    36  0.12
Contig-U11942-1 (Contig-U11942-1Q) /CSM_Contig/Conti...    36  0.12

>Contig-U13968-1 (Contig-U13968-1Q) /CSM_Contig/Contig-U13968-1Q.Seq.d
          Length = 1749

 Score = 3211 bits (1620), Expect = 0.0
 Identities = 1634/1641 (99%)
 Strand = Plus / Plus

                                                                        
Query: 1    attattaaatataaaaaatgaatagattaatatttatatttataacaattttatttgtag 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    attattaaatataaaaaatgaatagattaatatttatatttataacaattttatttgtag 60

                                                                        
Query: 61   aattaatttttggattccatactggtgatatttcnnnnnnncaagagattcaaaaagcat 120
            ||||||||||||||||||||||||||||||||||       |||||||||||||||||||
Sbjct: 61   aattaatttttggattccatactggtgatatttcaaaaaaacaagagattcaaaaagcat 120

                                                                        
Query: 121  cttttcaatttcttacagctgctgcctatagaaatgctcaaaaagatagagaatggtgtg 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  cttttcaatttcttacagctgctgcctatagaaatgctcaaaaagatagagaatggtgtg 180

                                                                        
Query: 181  aagatgataaaatcaaaggcggaagaccataccaatggaatgaatatagaggaatggtaa 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  aagatgataaaatcaaaggcggaagaccataccaatggaatgaatatagaggaatggtaa 240

                                                                        
Query: 241  tcaactatttggatctatatgttgctcttcaattcgatcctgaatgtaattcaaatgttg 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  tcaactatttggatctatatgttgctcttcaattcgatcctgaatgtaattcaaatgttg 300

                                                                        
Query: 301  caactttaagaagtttatttgtaaatcaattggctcaacctgatccatatccagtgaatg 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  caactttaagaagtttatttgtaaatcaattggctcaacctgatccatatccagtgaatg 360

                                                                        
Query: 361  caacttggtgggattccgtatttttaccaaccgctttgaatgctttctcatgtggcttta 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361  caacttggtgggattccgtatttttaccaaccgctttgaatgctttctcatgtggcttta 420

                                                                        
Query: 421  atggcagtaaaatagaggaccacgaatttgtatctgatgatcttttagaaaactttgata 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421  atggcagtaaaatagaggaccacgaatttgtatctgatgatcttttagaaaactttgata 480

                                                                        
Query: 481  atgataaaatgaaacaagatatttggtatatgattggtacttatatgacaagtatttata 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  atgataaaatgaaacaagatatttggtatatgattggtacttatatgacaagtatttata 540

                                                                        
Query: 541  agcaaagagaaaacattaatagaagattagattttgatgctggtctatatattccattcc 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  agcaaagagaaaacattaatagaagattagattttgatgctggtctatatattccattcc 600

                                                                        
Query: 601  ttgataaatatactggtggtgattatacaaaaactcagcaaatgagagttggcttcccaa 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601  ttgataaatatactggtggtgattatacaaaaactcagcaaatgagagttggcttcccaa 660

                                                                        
Query: 661  cataccttggtcgttcattgtgggccgttttccatattattgctcaaagagtttcagatt 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661  cataccttggtcgttcattgtgggccgttttccatattattgctcaaagagtttcagatt 720

                                                                        
Query: 721  cgtcatgtgaaagtagtggtaatagtactacaactgtttatacaagtttaactgaaaagt 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721  cgtcatgtgaaagtagtggtaatagtactacaactgtttatacaagtttaactgaaaagt 780

                                                                        
Query: 781  ttaaaaatttcatggtctatttcccattaaatcatgcatgtccattctgtagagaacata 840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781  ttaaaaatttcatggtctatttcccattaaatcatgcatgtccattctgtagagaacata 840

                                                                        
Query: 841  tgatttcaaaagtattagtaaacgatagatatgcccgtgatagttactctagtgaggcag 900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841  tgatttcaaaagtattagtaaacgatagatatgcccgtgatagttactctagtgaggcag 900

                                                                        
Query: 901  ttcgtttcttcccaatcgaacatttattaatgggaggaacaggtggtgacttaattgcaa 960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901  ttcgtttcttcccaatcgaacatttattaatgggaggaacaggtggtgacttaattgcaa 960

                                                                        
Query: 961  aactttcaactgtaagagctgatgataaacgttcaattgccgcctttttctggaaacttc 1020
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961  aactttcaactgtaagagctgatgataaacgttcaattgccgcctttttctggaaacttc 1020

                                                                        
Query: 1021 acaatgctgtgacctcttcagttgaacagggctgtcaatgttttactgaagaaattgaag 1080
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 acaatgctgtgacctcttcagttgaacagggctgtcaatgttttactgaagaaattgaag 1080

                                                                        
Query: 1081 atattgatccataccattgtgaatttaaatcaagtgtatcaattcaaacacgttatccaa 1140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 atattgatccataccattgtgaatttaaatcaagtgtatcaattcaaacacgttatccaa 1140

                                                                        
Query: 1141 gacaacaaagatcatatccatttgcaaagagatttgaatttattttaaatgaaaaacata 1200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 gacaacaaagatcatatccatttgcaaagagatttgaatttattttaaatgaaaaacata 1200

                                                                        
Query: 1201 attatacacttttcaaagaaactagaaaacaatttattaatattacttctgaaattaata 1260
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 attatacacttttcaaagaaactagaaaacaatttattaatattacttctgaaattaata 1260

                                                                        
Query: 1261 aattagatacagttcaaattagaatagaattgtttaaattttggaatgattcaagtgtaa 1320
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 aattagatacagttcaaattagaatagaattgtttaaattttggaatgattcaagtgtaa 1320

                                                                        
Query: 1321 aaattagtgaagatactcaaaacaaaattgatcaattaatgttattaattaataatatga 1380
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 aaattagtgaagatactcaaaacaaaattgatcaattaatgttattaattaataatatga 1380

                                                                        
Query: 1381 ctcaattgtttttagataccccagttctttccgaggcatactctttagtaaattcaacat 1440
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 ctcaattgtttttagataccccagttctttccgaggcatactctttagtaaattcaacat 1440

                                                                        
Query: 1441 tgaattgtacacttactgaagaatactttgcatccattaacctatcagatgttgaagctc 1500
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 tgaattgtacacttactgaagaatactttgcatccattaacctatcagatgttgaagctc 1500

                                                                        
Query: 1501 caaacctttcaattccaagaacaccagaacgttgtagtaatgaaactaaattatcagcat 1560
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1501 caaacctttcaattccaagaacaccagaacgttgtagtaatgaaactaaattatcagcat 1560

                                                                        
Query: 1561 gtgaagctcaatattttgttgaaccaaaggtagttaaaaaggatgaaaatagttcttcaa 1620
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1561 gtgaagctcaatattttgttgaaccaaaggtagttaaaaaggatgaaaatagttcttcaa 1620

                                 
Query: 1621 ataaactatccattggttggc 1641
            |||||||||||||||||||||
Sbjct: 1621 ataaactatccattggttggc 1641


>Contig-U04937-1 (Contig-U04937-1Q) /CSM_Contig/Contig-U04937-1Q.Seq.d
          Length = 466

 Score = 42.1 bits (21), Expect = 0.002
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 1288 aattgtttaaattttggaatg 1308
            |||||||||||||||||||||
Sbjct: 119  aattgtttaaattttggaatg 99


>Contig-U12027-1 (Contig-U12027-1Q) /CSM_Contig/Contig-U12027-1Q.Seq.d
          Length = 397

 Score = 40.1 bits (20), Expect = 0.008
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1177 aatttattttaaatgaaaaa 1196
            ||||||||||||||||||||
Sbjct: 22   aatttattttaaatgaaaaa 41


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 24,829
Number of Sequences: 6905
Number of extensions: 24829
Number of successful extensions: 2851
Number of sequences better than 10.0: 327
length of query: 1749
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1733
effective length of database: 5,564,391
effective search space: 9643089603
effective search space used: 9643089603
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.16
Homology vs DNA 
Query= Contig-U13968-1 (Contig-U13968-1Q) /CSM_Contig/Contig-U13968-1Q.Seq.d
         (1749 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ345158) Dictyostelium discoideum cDNA clone:dda21e22, 3' ...  1233   0.0    1
(C94179) Dictyostelium discoideum slug cDNA, clone SSK505.       1102   0.0    1
(BJ327794) Dictyostelium discoideum cDNA clone:dda21e22, 5' ...  1063   0.0    2
(AU074367) Dictyostelium discoideum slug cDNA, clone SSK505.      337   3e-95  2
(AC018812) Homo sapiens chromosome 3 clone RP11-161D20 map 3...    40   0.015  6
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    44   0.023  15
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    36   0.029  20
(AC170773) Bos taurus clone CH240-252P12, WORKING DRAFT SEQU...    52   0.073  1
(DU380889) 1098313027979 CHORI-243 Ovis aries genomic clone ...    52   0.073  1
(EJ723297) 1092959469265 Global-Ocean-Sampling_GS-30-02-01-1...    48   0.11   2
(EJ686714) 1092955188004 Global-Ocean-Sampling_GS-30-02-01-1...    48   0.13   2
(CD411219) Gm_ck40296 Soybean induced by Salicylic Acid Glyc...    50   0.29   1
(AL445564) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    34   0.30   13
(AU284906) Dictyostelium discoideum gamete cDNA clone:FC-BP1...    44   0.69   2
(BH147898) ENTPE73TR Entamoeba histolytica Sheared DNA Entam...    36   0.80   2
(AC026059) Homo sapiens chromosome 11 clone RP11-170L9, WORK...    40   0.95   6
(EW319476) rlin18_c1r1.y1 lin Sus scrofa cDNA 5', mRNA seque...    34   0.98   3
(AC185959) Glycine max clone gmw1-58k3, complete sequence.         36   1.0    8
(CU582793) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   1.1    1
(AC217878) Tachyglossus aculeatus clone TA_Ba-154N5, WORKING...    48   1.1    1
(AC217762) Tachyglossus aculeatus clone TA_Ba-131M9, WORKING...    48   1.1    1
(CT278850) Sus scrofa genomic clone PigE-81F4, genomic surve...    48   1.1    1
(DN315392) PL06020B2F08 cDNA from juvenile hermaphodites Sch...    48   1.1    1
(CO795214) AGENCOURT_30240676 NIH_MGC_257 Mus musculus cDNA ...    48   1.1    1
(BM169513) EST572036 PyBS Plasmodium yoelii yoelii cDNA clon...    48   1.1    1
(CP000678) Methanobrevibacter smithii ATCC 35061, complete g...    48   1.1    1
(CU852243) A BAC library has been constructed from PN40024 g...    42   1.2    2
(CU787799) A BAC library has been constructed from PN40024 g...    42   1.4    2
(CU824785) A BAC library has been constructed from PN40024 g...    42   1.5    2
(AC130530) Mus musculus BAC clone RP23-153P2 from chromosome...    40   2.0    5
(CU638733) Zebrafish DNA sequence from clone CH1073-268B21 i...    34   2.5    2
(CU638735) Zebrafish DNA sequence from clone CH1073-274H22 i...    34   2.5    2
(AC119512) Rattus norvegicus clone CH230-392J8, WORKING DRAF...    42   3.1    3
(AP009291) Solanum lycopersicum genomic DNA, chromosome 8, c...    40   3.1    3
(AC173342) Mus musculus BAC clone RP23-429O4 from chromosome...    40   3.2    3
(AC146532) Otolemur garnettii clone CH256-151F13, complete s...    46   4.5    1
(AM476782) Vitis vinifera, whole genome shotgun sequence, co...    46   4.5    1
(AC107960) Homo sapiens chromosome 8, clone RP11-983C19, com...    46   4.5    1
(AC117360) Rattus norvegicus clone CH230-396E2, *** SEQUENCI...    46   4.5    1
(AC112750) Rattus norvegicus clone CH230-323I14, *** SEQUENC...    46   4.5    1
(AC107587) Rattus norvegicus clone CH230-51B22, *** SEQUENCI...    46   4.5    1
(AC099448) Rattus norvegicus clone CH230-56M5, *** SEQUENCIN...    46   4.5    1
(AC095881) Rattus norvegicus clone CH230-11M12, *** SEQUENCI...    46   4.5    1
(AC094803) Rattus norvegicus clone CH230-5A22, *** SEQUENCIN...    46   4.5    1
(AC036155) Homo sapiens chromosome 8 clone RP11-352P8 map 8,...    46   4.5    1
(AC223118) Bos taurus clone CH240-429H20, WORKING DRAFT SEQU...    46   4.5    1
(AC011715) Homo sapiens chromosome 8 clone RP11-22A24, WORKI...    46   4.5    1
(FH005559) CHO_OF401xa07r1.ab1 CHO_OF Nicotiana tabacum geno...    46   4.5    1
(FH005494) CHO_OF401xa07f2.ab1 CHO_OF Nicotiana tabacum geno...    46   4.5    1
(ET943793) CHO_OF050xl21r1.ab1 CHO_OF Nicotiana tabacum geno...    46   4.5    1
(DU708275) Bst040802 lambda03 Boechera stricta genomic clone...    46   4.5    1
(CZ935996) 255061 Tomato EcoRI BAC Library Solanum lycopersi...    46   4.5    1
(CZ496942) OA_BBa0138F04.f OA_BBa Oryza alta genomic clone O...    46   4.5    1
(CC837936) ZMMBBc0490C05f ZMMBBc Zea mays subsp. mays genomi...    46   4.5    1
(DN829134) KUCD01_08_F04_T3 WSWR cDNA library Triticum aesti...    46   4.5    1
(DN245176) ACAE-aaa54e07.g1 Hydra EST UCI 5 Hydra magnipapil...    46   4.5    1
(BW551714) Ciona savignyi cDNA, clone:csga069j15, 3'end, sin...    46   4.5    1
(FG666607) G1142P326RN16.T0 Anolis carolinensis pooled norma...    46   4.5    1
(FG666559) G1142P326FN16.T0 Anolis carolinensis pooled norma...    46   4.5    1
(EY451819) CBAZ5347.rev CBAZ Tubifex tubifex Embryos and juv...    46   4.5    1
(CP000061) Aster yellows witches'-broom phytoplasma AYWB, co...    32   4.5    17
(CC615835) OGWDC94TV ZM_0.7_1.5_KB Zea mays genomic clone ZM...    40   5.3    3
(AK239476) Sus scrofa mRNA, clone:THY010106G03, expressed in...    34   5.6    3
(AX416752) Sequence 3743 from Patent WO0228891.                    38   6.0    3
(AM285313) Spiroplasma citri GII3-3X chromosome, contig Cont...    32   6.1    7
(CC636599) OGLAS29TH ZM_0.7_1.5_KB Zea mays genomic clone ZM...    40   6.2    3
(AC008425) Homo sapiens chromosome 5 clone CTC-304O9, comple...    38   6.2    7
(FH243234) CHO_OF3119xo15r1.ab1 CHO_OF3 Nicotiana tabacum ge...    40   6.6    2
(AC046134) Homo sapiens 3 BAC RP11-553K23 (Roswell Park Canc...    44   6.7    4
(AZ688627) ENTME24TR Entamoeba histolytica Sheared DNA Entam...    44   7.1    2
(EJ206634) 1092344355102 Global-Ocean-Sampling_GS-27-01-01-1...    30   7.2    4
(AL929351) Plasmodium falciparum strain 3D7, chromosome 5, s...    32   7.8    2
(AP008934) Staphylococcus saprophyticus subsp. saprophyticus...    34   8.2    22
(AC189621) Brassica rapa subsp. pekinensis clone KBrH121P05,...    34   8.3    2
(AC171135) Helobdella robusta clone CH306-1A6, complete sequ...    34   8.6    2
(AC131502) Lytechinus variegatus clone Lv60B16, *** SEQUENCI...    34   8.8    2
(AC169021) Loxodonta africana clone VMRC15-436D21, WORKING D...    36   8.8    4
(EJ740291) 1092962012666 Global-Ocean-Sampling_GS-30-02-01-1...    34   9.3    4
(EK403459) 1095469553020 Global-Ocean-Sampling_GS-31-01-01-1...    30   9.7    4

>(BJ345158) Dictyostelium discoideum cDNA clone:dda21e22, 3' end,
            single read.
          Length = 648

 Score = 1233 bits (622), Expect = 0.0
 Identities = 622/622 (100%)
 Strand = Plus / Minus


Query: 1022 caatgctgtgacctcttcagttgaacagggctgtcaatgttttactgaagaaattgaaga 1081
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636  caatgctgtgacctcttcagttgaacagggctgtcaatgttttactgaagaaattgaaga 577


Query: 1082 tattgatccataccattgtgaatttaaatcaagtgtatcaattcaaacacgttatccaag 1141
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576  tattgatccataccattgtgaatttaaatcaagtgtatcaattcaaacacgttatccaag 517


Query: 1142 acaacaaagatcatatccatttgcaaagagatttgaatttattttaaatgaaaaacataa 1201
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516  acaacaaagatcatatccatttgcaaagagatttgaatttattttaaatgaaaaacataa 457


Query: 1202 ttatacacttttcaaagaaactagaaaacaatttattaatattacttctgaaattaataa 1261
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456  ttatacacttttcaaagaaactagaaaacaatttattaatattacttctgaaattaataa 397


Query: 1262 attagatacagttcaaattagaatagaattgtttaaattttggaatgattcaagtgtaaa 1321
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396  attagatacagttcaaattagaatagaattgtttaaattttggaatgattcaagtgtaaa 337


Query: 1322 aattagtgaagatactcaaaacaaaattgatcaattaatgttattaattaataatatgac 1381
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336  aattagtgaagatactcaaaacaaaattgatcaattaatgttattaattaataatatgac 277


Query: 1382 tcaattgtttttagataccccagttctttccgaggcatactctttagtaaattcaacatt 1441
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276  tcaattgtttttagataccccagttctttccgaggcatactctttagtaaattcaacatt 217


Query: 1442 gaattgtacacttactgaagaatactttgcatccattaacctatcagatgttgaagctcc 1501
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216  gaattgtacacttactgaagaatactttgcatccattaacctatcagatgttgaagctcc 157


Query: 1502 aaacctttcaattccaagaacaccagaacgttgtagtaatgaaactaaattatcagcatg 1561
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156  aaacctttcaattccaagaacaccagaacgttgtagtaatgaaactaaattatcagcatg 97


Query: 1562 tgaagctcaatattttgttgaaccaaaggtagttaaaaaggatgaaaatagttcttcaaa 1621
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96   tgaagctcaatattttgttgaaccaaaggtagttaaaaaggatgaaaatagttcttcaaa 37


Query: 1622 taaactatccattggttggctc 1643
            ||||||||||||||||||||||
Sbjct: 36   taaactatccattggttggctc 15

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,961,756,729
Number of extensions: 116649385
Number of successful extensions: 9782212
Number of sequences better than 10.0: 79
Length of query: 1749
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1725
Effective length of database: 97,308,875,965
Effective search space: 167857811039625
Effective search space used: 167857811039625
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 9
Homology vs Protein 
Query= Contig-U13968-1 (Contig-U13968-1Q) /CSM_Contig/Contig-U13968-1Q.Seq.d
         (1749 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001037_2650(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...    99   5e-19
DQ284920_3(DQ284920|pid:none) Uncultured marine type-A Synechoco...    82   8e-14
CP000110_757(CP000110|pid:none) Synechococcus sp. CC9605, comple...    79   5e-13
AE016828_1109(AE016828|pid:none) Coxiella burnetii RSA 493, comp...    42   0.055
CP001020_1014(CP001020|pid:none) Coxiella burnetii CbuK_Q154, co...    42   0.055
CR382399_67(CR382399|pid:none) Plasmodium falciparum chromosome ...    39   0.60
AL844505_152(AL844505|pid:none) Plasmodium falciparum 3D7 chromo...    39   0.60
CP000679_366(CP000679|pid:none) Caldicellulosiruptor saccharolyt...    36   3.9
Z22813_2(Z22813|pid:none) L.lactis nisR and nisK genes in nisin ...    36   3.9
CP000922_1020(CP000922|pid:none) Anoxybacillus flavithermus WK1,...    36   5.1
CR382134_59(CR382134|pid:none) Debaryomyces hansenii strain CBS7...    36   5.1
AM180255_98(AM180255|pid:none) Lawsonia intracellularis PHE/MN1-...    35   8.7
T31591(T31591)hypothetical protein Y48C3A.i - Caenorhabditis ele...    35   8.7
(Q9JXY7) RecName: Full=Isoleucyl-tRNA synthetase;          EC=6....    35   8.7
(A9M1J7) RecName: Full=Isoleucyl-tRNA synthetase;          EC=6....    35   8.7

>CP001037_2650(CP001037|pid:none) Nostoc punctiforme PCC 73102,
            complete genome.
          Length = 782

 Score = 99.0 bits (245), Expect = 5e-19
 Identities = 76/258 (29%), Positives = 111/258 (43%), Gaps = 32/258 (12%)
 Frame = +3

Query: 366  WWDSVFLPTALNAFSCG----FNGSKIEDHEFVSD----------------DLLENFDND 485
            +W   F+P  L AFS         + I D   + +                D+ ENF N
Sbjct: 412  YWYEDFMPKLLAAFSVSTAADIQSNTIPDEAALDEWYDLTKKSGEFNRYGADVAENFLNC 471

Query: 486  KMKQDI-----WYMIGTYMTSIYKQRENINRRLDFDA-GLYIPFLDKYTGGDYTKTQQMR 647
              K+ +     W +   Y+  + K+RE +    +  A   Y+ F+D Y      K  QMR
Sbjct: 472  TAKEKLILKQAWRLTHHYLNGVQKRRERLEFGRESGALSQYVSFIDVYLNRTEVKDSQMR 531

Query: 648  VGFPTYLGRSLWAVFHIIAQRVSDSSCESSGNSTTTVYTSLTEKFKNFMVYFPLNHACPF 827
            V FP Y+G ++W  FH  A+ V           T     +L   FK+F   F   + CP+
Sbjct: 532  VSFPYYIGPAVWRFFHTTAEIVC--------TKTDIQQKTLMAIFKDFFQLFATMYPCPY 583

Query: 828  CREHMISKVLVNDRYARDSYSSEAVRFFPIEHLLMGGTGG------DLIAKLSTVRADDK 989
            CR H+   V+ N          + V  +P+E+L++G           L AKLSTV   D
Sbjct: 584  CRHHLNMYVVQN----------KEVDMYPVEYLVLGRDPNLRDFEVSLEAKLSTV--VDG 631

Query: 990  RSIAAFFWKLHNAVTSSV 1043
             S+  FFWKLHN V+SS+
Sbjct: 632  SSLRLFFWKLHNTVSSSI 649

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,659,231,841
Number of extensions: 52794774
Number of successful extensions: 144864
Number of sequences better than 10.0: 15
Number of HSP's gapped: 144774
Number of HSP's successfully gapped: 15
Length of query: 583
Length of database: 1,051,180,864
Length adjustment: 134
Effective length of query: 449
Effective length of database: 617,481,958
Effective search space: 277249399142
Effective search space used: 277249399142
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 1.01  gvh: 0.64  alm: 0.17  top: 0.37  tms: 0.07  mit: 0.35  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 1.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 1.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: plasma membrane
	 32.0 %: extracellular, including cell wall
	 20.0 %: endoplasmic reticulum
	 12.0 %: Golgi

>> prediction for Contig-U13968-1 is pla
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0