Contig-U13963-1
Contig ID Contig-U13963-1
Contig update 2002.12.18
Contig sequence
>Contig-U13963-1 (Contig-U13963-1Q) /CSM_Contig/Contig-U13963-1Q.Seq.d
ATAAAATTTATGCGCACACACCAATCTTTTAAAAGATAATAATGGATAAT
AATTTTGGTAGTAATAGTAATAGTAATAGTAATAATAATAGACCTAGATT
TAGTTTGAGCGGAAACAACACAAATAGTATAGGTATTGGTGGTAATAATC
CTCAAAAGAGACCACCATCAAGAACACCAGGTAGACAATCAATTCAACCA
TCCTCCTTTTACAGCAACAATGAACGTACAAATCCAATAAATTTTAATAC
TAGTATAAACAATAACAACCCAGCATTTTTAAATGAAACAACACCAACAT
TAAAACGTTCATCACTTAGATACTCCATATCTGGAGACACAAGTCAAAAC
TATAATAACAAACCTCCCCTCTCACAATCAACAACAACAAAATCAGCAAC
AATGGAGAGGAAATGATATACAGCAACAACAACAACAACAACAACAACAA
CATATTAATCAACAACAAAATCAACAACAACAAAATCAACAACAAAATCA
ACAACAACAACAACAACAATTATCACCACAACAAACAAAGAATGCAATAC
AAAATATTATAGAAAGTACAAATCCAGCTCAATTATTTGAAATGTTGAGT
AATATGAAAAGTTTTGTTCAACATCAACCAGATCAAGCAATATCTATACT
GATTAATTATCCTCAAATGGGTTTAGCATTACTTCATGCTCAAGTAGTTT
TAGGTATGATTTCTCAAAATGCTGCCACTCAAATTTTATTAAGTAATCCA
AAGAATCAACAACCACAACAACAACAACAACAACAACAACCACAACCACA
ACAACAACCACAACCACAAAACTTTAATCAATCACCAACAATGTATAATA
ATCAAAATAATAATCAAATGATGGGAATGCAACAAGGTAATATGGGAGGT
CCGCAAGGTAATCAAATGATGGGTATGGGTGGTAATAATATGGGTATGGG
TGTTGGTGCTGTCAATAATGGCCCACAAACTAATCAAATGATGGGTGGTA
ATAATATGGGTATGGGTGGTCCACAAGGTGGTAATATGGGTAATAATATG
AATAATATGGGTAATAATATGGGTGGTAATAATATGGGTAATAATATGAA
TAATATGGGTAATATGGGTAATATGGGTAATATGGGTAATATGGGTAATA
TGGGCAACATGGGTAATATGGGTAATATGGGTAATATGAATATGGGTAGT
ATGGGTAATAATAATATGAATAATATGAACCAACAACAACGACAACAACA
ACAACAACAACAACAAGGTGGAAATAATATGAATATGGGTAATATGGGTA
ATAATATGAATAATATGAATATGAATAATAATATGAATAATAATATGAAT
AATAATATGAATAATATGAATAATATGAATAATATGATGAATAATATGAA
TAATATGGGTAATATGGGTAATATGATGAATCAACAACAACAAGGTGGTA
GTATCCCACCTCCACCTGGTTTATCACCTGTTGCAATGGCAAGTTGGAAT
CAATTAGGTGATAAATATAAACAATTCGCAAGTTATGTTTTAAGTCTCAC
CCAACAACAAATTGATCAAGTTCCTGAGAGTCAAAGACCTCAAATCATTA
AAATCAGACAACAATTTGGTAGAAATTAAAAATAAATAAATAAAAAAAAA
AAATAATAAAAATTAAACTATAGATCTTTAAAAAAAAAAAAAAAAAA

Gap no gap
Contig length 1697
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 7
Number of EST 12
Link to clone list U13963
List of clone(s)

est1=SLK440F,-128,-7
est2=SSK814F,-128,456
est3=SFE412F,1,494
est4=CFG872F,72,725
est5=SLG126Z,156,548
est6=AFJ703F,342,975
est7=CFG872Z,920,1615
est8=AFJ703Z,1103,1661
est9=SLG126F,1139,1697
est10=SLK440Z,1153,1689
est11=VSJ172F,1220,1651
est12=VSJ172Z,1220,1637
Translated Amino Acid sequence
ikfmrthqsfkr**wiiilvviviviviiidldlv*aettqiv*vlvviilkrdhhqehq
vdnqfnhppftatmnvqiq*ililv*tittqhf*mkqhqh*NVHHLDTPYLETQVKTIIT
NLPSHNQQQQNQQQWRGNDIQQQQQQQQQQHINQQQNQQQQNQQQNQQQQQQQLSPQQTK
NAIQNIIESTNPAQLFEMLSNMKSFVQHQPDQAISILINYPQMGLALLHAQVVLGMISQN
AATQILLSNPKNQQPQQQQQQQQPQPQQQPQPQNFNQSPTMYNNQNNNQMMGMQQGNMGG
PQGNQMMGMGGNNMGMGVGAVNNGPQTNQMMGGNNMGMGGPQGGNMGNNMNNMGNNMGGN
NMGNNMNNMGNMGNMGNMGNMGNMGNMGNMGNMGNMNMGSMGNNNMNNMNQQQRQQQQQQ
QQGGNNMNMGNMGNNMNNMNMNNNMNNNMNNNMNNMNNMNNMMNNMNNMGNMGNMMNQQQ
QGGSIPPPPGLSPVAMASWNQLGDKYKQFASYVLSLTQQQIDQVPESQRPQIIKIRQQFG
RN*k*inkkkk**klnyrslkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
ikfmrthqsfkr**wiiilvviviviviiidldlv*aettqiv*vlvviilkrdhhqehq
vdnqfnhppftatmnvqiq*ililv*tittqhf*mkqhqh*NVHHLDTPYLETQVKTIIT
NLPSHNQQQQNQQQWRGNDIQQQQQQQQQQHINQQQNQQQQNQQQNQQQQQQQLSPQQTK
NAIQNIIESTNPAQLFEMLSNMKSFVQHQPDQAISILINYPQMGLALLHAQVVLGMISQN
AATQILLSNPKNQQPQQQQQQQQPQPQQQPQPQNFNQSPTMYNNQNNNQMMGMQQGNMGG
PQGNQMMGMGGNNMGMGVGAVNNGPQTNQMMGGNNMGMGGPQGGNMGNNMNNMGNNMGGN
NMGNNMNNMGNMGNMGNMGNMGNMGNMGNMGNMGNMNMGSMGNNNMNNMNQQQRQQQQQQ
QQGGNNMNMGNMGNNMNNMNMNNNMNNNMNNNMNNMNNMNNMMNNMNNMGNMGNMMNQQQ
QGGSIPPPPGLSPVAMASWNQLGDKYKQFASYVLSLTQQQIDQVPESQRPQIIKIRQQFG
RN*k*inkkkk**klnyrslkkkkk


Frame B:
*nlcahtnllkdnng**fw***********t*i*ferkqhk*yryww**sskettikntr
*tinstilllqqq*tyksnkf*y*ykq*qpsifk*nntniktfit*ilhiwrhkskl**q
tspltinnnkisnngeemiysnnnnnnnnnilinnkinnnkinnkinnnnnnnyhhnkqr
mqykil*kvqiqlnylkc*vi*kvlfninqikqyly*liilkwv*hyfmlk*f*v*flkm
lplkfy*viqrinnhnnnnnnnnhnhnnnhnhktlinhqqciiikiiik*wecnkviwev
rkvik*wvwvviiwvwvlvlsimahklik*wvviiwvwvvhkvviwvii*iiwviiwvvi
iwvii*iiwviwviwviwviwviwatwviwviwvi*iwvvwviii*ii*tnnndnnnnnn
nkveii*iwviwvii*ii*i*iii*iii*iii*ii*ii*ii**ii*iiwviwvi**innn
kvvvshlhlvyhllqwqvgin*vininnsqvmf*vspnnklikflrvkdlkslksdnnlv
eiknk*ikkknnkn*tidl*kkkkk


Frame C:
kiyahtpif*kiimdnnfgsnsnsnsnnnrprfslsgnntnsigiggnnpqkrppsrtpg
rqsiqpssfysnnertnpinfntsinnnnpaflnettptlkrsslrysisgdtsqnynnk
pplsqstttksatmerk*ytattttttttty*sttkstttksttksttttttiitttnke
cntkyyrkyksssii*nve*yekfcststrssniytd*lssngfsitscsssfrydfskc
chsnfik*skesttttttttttttttttttttkl*sitnnv**sk**sndgnatr*ygrs
ar*sndgygw**ygygcwccq*wptn*sndgw**ygygwstrw*yg**ye*yg**ygw**
yg**ye*yg*yg*yg*yg*yg*ygqhg*yg*yg*yeyg*yg***ye*yeptttttttttt
trwk*yeyg*yg**ye*yeye**ye**ye**ye*ye*ye*yde*ye*yg*yg*ydesttt
rw*yptstwfitccngklesir**i*tirklcfkshpttn*sss*esktsnh*nqttiw*
klkink*kkkiikikl*ifkkkkkk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U13963-1 (Contig-U13963-1Q)
/CSM_Contig/Contig-U13963-1Q.Seq.d
(1697 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U13963-1 (Contig-U13963-1Q) /CSM_Contig/Conti... 660 0.0
Contig-U11888-1 (Contig-U11888-1Q) /CSM_Contig/Conti... 48 3e-05
Contig-U10958-1 (Contig-U10958-1Q) /CSM_Contig/Conti... 48 3e-05
Contig-U09143-1 (Contig-U09143-1Q) /CSM_Contig/Conti... 48 3e-05
Contig-U00906-1 (Contig-U00906-1Q) /CSM_Contig/Conti... 48 3e-05
Contig-U14875-1 (Contig-U14875-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U09440-1 (Contig-U09440-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U08861-1 (Contig-U08861-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U02898-1 (Contig-U02898-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U13852-1 (Contig-U13852-1Q) /CSM_Contig/Conti... 40 0.008

>Contig-U13963-1 (Contig-U13963-1Q) /CSM_Contig/Contig-U13963-1Q.Seq.d
Length = 1697

Score = 660 bits (333), Expect = 0.0
Identities = 333/333 (100%)
Strand = Plus / Plus


Query: 91 gacctagatttagtttgagcggaaacaacacaaatagtataggtattggtggtaataatc 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 gacctagatttagtttgagcggaaacaacacaaatagtataggtattggtggtaataatc 150


Query: 151 ctcaaaagagaccaccatcaagaacaccaggtagacaatcaattcaaccatcctcctttt 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 ctcaaaagagaccaccatcaagaacaccaggtagacaatcaattcaaccatcctcctttt 210


Query: 211 acagcaacaatgaacgtacaaatccaataaattttaatactagtataaacaataacaacc 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 acagcaacaatgaacgtacaaatccaataaattttaatactagtataaacaataacaacc 270


Query: 271 cagcatttttaaatgaaacaacaccaacattaaaacgttcatcacttagatactccatat 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 cagcatttttaaatgaaacaacaccaacattaaaacgttcatcacttagatactccatat 330


Query: 331 ctggagacacaagtcaaaactataataacaaacctcccctctcacaatcaacaacaacaa 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ctggagacacaagtcaaaactataataacaaacctcccctctcacaatcaacaacaacaa 390


Query: 391 aatcagcaacaatggagaggaaatgatatacag 423
|||||||||||||||||||||||||||||||||
Sbjct: 391 aatcagcaacaatggagaggaaatgatatacag 423


Score = 432 bits (218), Expect = e-121
Identities = 218/218 (100%)
Strand = Plus / Plus


Query: 539 agaatgcaatacaaaatattatagaaagtacaaatccagctcaattatttgaaatgttga 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 agaatgcaatacaaaatattatagaaagtacaaatccagctcaattatttgaaatgttga 598


Query: 599 gtaatatgaaaagttttgttcaacatcaaccagatcaagcaatatctatactgattaatt 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 gtaatatgaaaagttttgttcaacatcaaccagatcaagcaatatctatactgattaatt 658


Query: 659 atcctcaaatgggtttagcattacttcatgctcaagtagttttaggtatgatttctcaaa 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 atcctcaaatgggtttagcattacttcatgctcaagtagttttaggtatgatttctcaaa 718


Query: 719 atgctgccactcaaattttattaagtaatccaaagaat 756
||||||||||||||||||||||||||||||||||||||
Sbjct: 719 atgctgccactcaaattttattaagtaatccaaagaat 756


Score = 408 bits (206), Expect = e-114
Identities = 206/206 (100%)
Strand = Plus / Plus


Query: 820 aactttaatcaatcaccaacaatgtataataatcaaaataataatcaaatgatgggaatg 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 aactttaatcaatcaccaacaatgtataataatcaaaataataatcaaatgatgggaatg 879


Query: 880 caacaaggtaatatgggaggtccgcaaggtaatcaaatgatgggtatgggtggtaataat 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 caacaaggtaatatgggaggtccgcaaggtaatcaaatgatgggtatgggtggtaataat 939


Query: 940 atgggtatgggtgttggtgctgtcaataatggcccacaaactaatcaaatgatgggtggt 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940 atgggtatgggtgttggtgctgtcaataatggcccacaaactaatcaaatgatgggtggt 999


Query: 1000 aataatatgggtatgggtggtccaca 1025
||||||||||||||||||||||||||
Sbjct: 1000 aataatatgggtatgggtggtccaca 1025


Score = 393 bits (198), Expect = e-109
Identities = 198/198 (100%)
Strand = Plus / Plus


Query: 1425 gatgaatcaacaacaacaaggtggtagtatcccacctccacctggtttatcacctgttgc 1484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1425 gatgaatcaacaacaacaaggtggtagtatcccacctccacctggtttatcacctgttgc 1484


Query: 1485 aatggcaagttggaatcaattaggtgataaatataaacaattcgcaagttatgttttaag 1544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1485 aatggcaagttggaatcaattaggtgataaatataaacaattcgcaagttatgttttaag 1544


Query: 1545 tctcacccaacaacaaattgatcaagttcctgagagtcaaagacctcaaatcattaaaat 1604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1545 tctcacccaacaacaaattgatcaagttcctgagagtcaaagacctcaaatcattaaaat 1604


Query: 1605 cagacaacaatttggtag 1622
||||||||||||||||||
Sbjct: 1605 cagacaacaatttggtag 1622


Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Plus


Query: 1 ataaaatttatgcgcacacaccaatcttttaaaa 34
||||||||||||||||||||||||||||||||||
Sbjct: 1 ataaaatttatgcgcacacaccaatcttttaaaa 34


Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus


Query: 376 aatcaacaacaacaaaatcagcaacaa 402
|||||||||||||||||||| ||||||
Sbjct: 469 aatcaacaacaacaaaatcaacaacaa 495


Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus


Query: 924 tatgggtggtaataatatgggta 946
|||||||||||||||||||||||
Sbjct: 1068 tatgggtggtaataatatgggta 1090


Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus


Query: 991 atgggtggtaataatatgggta 1012
||||||||||||||||||||||
Sbjct: 1069 atgggtggtaataatatgggta 1090


Score = 34.2 bits (17), Expect = 0.48
Identities = 20/21 (95%)
Strand = Plus / Plus


Query: 382 caacaacaaaatcagcaacaa 402
|||||||||||||| ||||||
Sbjct: 487 caacaacaaaatcaacaacaa 507


Score = 34.2 bits (17), Expect = 0.48
Identities = 20/21 (95%)
Strand = Plus / Plus


Query: 382 caacaacaaaatcagcaacaa 402
|||||||||||||| ||||||
Sbjct: 460 caacaacaaaatcaacaacaa 480


Score = 34.2 bits (17), Expect = 0.48
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 1432 caacaacaacaaggtgg 1448
|||||||||||||||||
Sbjct: 1255 caacaacaacaaggtgg 1271


Score = 30.2 bits (15), Expect = 7.4
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 997 ggtaataatatgggt 1011
|||||||||||||||
Sbjct: 1060 ggtaataatatgggt 1074


Score = 30.2 bits (15), Expect = 7.4
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 1429 aatcaacaacaacaa 1443
|||||||||||||||
Sbjct: 376 aatcaacaacaacaa 390


Score = 30.2 bits (15), Expect = 7.4
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 376 aatcaacaacaacaa 390
|||||||||||||||
Sbjct: 496 aatcaacaacaacaa 510


Score = 30.2 bits (15), Expect = 7.4
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 376 aatcaacaacaacaa 390
|||||||||||||||
Sbjct: 1429 aatcaacaacaacaa 1443


Score = 30.2 bits (15), Expect = 7.4
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 931 ggtaataatatgggt 945
|||||||||||||||
Sbjct: 1060 ggtaataatatgggt 1074


Score = 30.2 bits (15), Expect = 7.4
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 1429 aatcaacaacaacaa 1443
|||||||||||||||
Sbjct: 469 aatcaacaacaacaa 483


Score = 30.2 bits (15), Expect = 7.4
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 1429 aatcaacaacaacaa 1443
|||||||||||||||
Sbjct: 496 aatcaacaacaacaa 510


>Contig-U11888-1 (Contig-U11888-1Q) /CSM_Contig/Contig-U11888-1Q.Seq.d
Length = 1263

Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus


Query: 845 ataataatcaaaataataatcaaa 868
||||||||||||||||||||||||
Sbjct: 288 ataataatcaaaataataatcaaa 311


Score = 36.2 bits (18), Expect = 0.12
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 845 ataataatcaaaataata 862
||||||||||||||||||
Sbjct: 300 ataataatcaaaataata 317


Score = 36.2 bits (18), Expect = 0.12
Identities = 21/22 (95%)
Strand = Plus / Plus


Query: 847 aataatcaaaataataatcaaa 868
||||| ||||||||||||||||
Sbjct: 278 aataaccaaaataataatcaaa 299


>Contig-U10958-1 (Contig-U10958-1Q) /CSM_Contig/Contig-U10958-1Q.Seq.d
Length = 1272

Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus


Query: 845 ataataatcaaaataataatcaaa 868
||||||||||||||||||||||||
Sbjct: 923 ataataatcaaaataataatcaaa 946


Score = 34.2 bits (17), Expect = 0.48
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 845 ataataatcaaaataat 861
|||||||||||||||||
Sbjct: 935 ataataatcaaaataat 951


Score = 34.2 bits (17), Expect = 0.48
Identities = 20/21 (95%)
Strand = Plus / Plus


Query: 844 tataataatcaaaataataat 864
||||| |||||||||||||||
Sbjct: 895 tataacaatcaaaataataat 915


Score = 32.2 bits (16), Expect = 1.9
Identities = 22/24 (91%)
Strand = Plus / Plus


Query: 845 ataataatcaaaataataatcaaa 868
|||||||| | |||||||||||||
Sbjct: 911 ataataataataataataatcaaa 934


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 28,006
Number of Sequences: 6905
Number of extensions: 28006
Number of successful extensions: 3565
Number of sequences better than 10.0: 564
length of query: 1697
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1681
effective length of database: 5,564,391
effective search space: 9353741271
effective search space used: 9353741271
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.16
Homology vs DNA
Query= Contig-U13963-1 (Contig-U13963-1Q) /CSM_Contig/Contig-U13963-1Q.Seq.d
(1697 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ359444) Dictyostelium discoideum cDNA clone:ddc14p18, 5' ... 559 0.0 2
(BJ327332) Dictyostelium discoideum cDNA clone:dda20f01, 5' ... 398 e-178 2
(BJ388347) Dictyostelium discoideum cDNA clone:dds9h04, 5' e... 559 e-167 2
(BJ372880) Dictyostelium discoideum cDNA clone:ddc14p18, 3' ... 260 e-118 4
(AU269517) Dictyostelium discoideum vegetative cDNA clone:VS... 379 e-100 1
(AU054024) Dictyostelium discoideum slug cDNA, clone SLK440. 379 e-100 1
(AU269518) Dictyostelium discoideum vegetative cDNA clone:VS... 367 9e-97 1
(AU061797) Dictyostelium discoideum slug cDNA, clone SLG126. 359 2e-94 1
(BJ344656) Dictyostelium discoideum cDNA clone:dda20f01, 3' ... 236 3e-66 2
(AM055582) Polyplastron multivesiculatum EST, clone Pm07_D01. 38 0.015 2
(AY428796) Dictyostelium discoideum DIF insensitive mutant A... 52 0.071 1
(BX511137) Zebrafish DNA sequence from clone DKEY-192A11 in ... 50 0.28 1
(AY653733) Acanthamoeba polyphaga mimivirus, complete genome. 50 0.28 1
(BJ440993) Dictyostelium discoideum cDNA clone:ddv45i07, 3' ... 48 0.33 2
(BJ344192) Dictyostelium discoideum cDNA clone:dda18p17, 3' ... 48 0.35 2
(AY232269) Dictyostelium discoideum putative protein Roco7 (... 48 0.50 3
(CW953278) TcB39.2_C10_SP6 Tribolium BAC library Tribolium c... 42 0.77 3
(AL954672) Zebrafish DNA sequence from clone CH211-237K3 in ... 48 1.1 1
(CP000500) Pichia stipitis CBS 6054 chromosome 6, complete s... 48 1.1 1
(AY191018) Dictyostelium discoideum autophagy protein 4 (apg... 48 1.1 1
(AF163834) Dictyostelium discoideum developmental protein DG... 48 1.1 1
(AF079445) Dictyostelium discoideum TipC (tipC) gene, comple... 48 1.1 1
(AE014852) Plasmodium falciparum 3D7 chromosome 12, section ... 48 1.1 1
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 48 1.1 1
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 48 1.1 1
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 48 1.1 1
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214... 48 1.1 1
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975... 48 1.1 1
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 48 1.1 1
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-... 48 1.1 1
(AC151874) Didelphis virginiana clone LB3-236F8, WORKING DRA... 48 1.1 1
(AC148752) Didelphis virginiana clone LB3-171C2, WORKING DRA... 48 1.1 1
(AC140955) Didelphis virginiana clone LB3-197O4, WORKING DRA... 48 1.1 1
(AC140156) Didelphis virginiana clone LB3-20F15, WORKING DRA... 48 1.1 1
(AC139599) Didelphis virginiana clone LB3-206D4, WORKING DRA... 48 1.1 1
(AC139121) Didelphis virginiana clone LB3-39J13, WORKING DRA... 48 1.1 1
(AC120504) Didelphis virginiana clone LB3-33C20, WORKING DRA... 48 1.1 1
(AC231466) Choloepus hoffmanni clone CH281-360O8, WORKING DR... 48 1.1 1
(AC006279) Plasmodium falciparum chromosome 12 clone 3D7, **... 48 1.1 1
(EK259605) 1095462099107 Global-Ocean-Sampling_GS-31-01-01-1... 48 1.1 1
(AU052816) Dictyostelium discoideum slug cDNA, clone SLF150. 48 1.1 1
(AU034148) Dictyostelium discoideum slug cDNA, clone SLC101. 48 1.1 1
(AU033965) Dictyostelium discoideum slug cDNA, clone SLB668. 48 1.1 1
(BJ441802) Dictyostelium discoideum cDNA clone:ddv47m22, 3' ... 48 1.1 1
(BJ369459) Dictyostelium discoideum cDNA clone:ddc50l13, 5' ... 48 1.1 1
(BG603506) EST502596 Plasmodium yoelii sporozoite cDNA Plasm... 48 1.1 1
(AC104590) Homo sapiens chromosome 15, clone RP11-643M14, co... 46 4.4 1
(AC009554) Homo sapiens, clone RP11-16B9, complete sequence. 46 4.4 1
(AC132042) Rattus norvegicus clone CH230-341F22, WORKING DRA... 46 4.4 1
(AC230473) Bos taurus clone CH240-507H23, WORKING DRAFT SEQU... 46 4.4 1
(AC222986) Bos taurus clone CH240-432P4, WORKING DRAFT SEQUE... 46 4.4 1
(AC172484) Bos taurus clone CH240-145F2, WORKING DRAFT SEQUE... 46 4.4 1
(EJ960506) 1093022000127 Global-Ocean-Sampling_GS-30-02-01-1... 46 4.4 1
(EJ860999) 1093017977076 Global-Ocean-Sampling_GS-30-02-01-1... 46 4.4 1
(AM625249) Entamoeba dispar GSS, clone dispar116a12.q1k. 46 4.4 1
(CE649225) tigr-gss-dog-17000367323614 Dog Library Canis lup... 46 4.4 1
(BX132092) Danio rerio genomic clone DKEY-93K2, genomic surv... 46 4.4 1
(AU072285) Dictyostelium discoideum slug cDNA, clone SSE105. 46 4.4 1
(AC107325) Drosophila melanogaster clone RP98-21G15, WORKING... 40 6.4 3

>(BJ359444) Dictyostelium discoideum cDNA clone:ddc14p18, 5' end,
single read.
Length = 654

Score = 559 bits (282), Expect(2) = 0.0
Identities = 282/282 (100%)
Strand = Plus / Plus


Query: 92 acctagatttagtttgagcggaaacaacacaaatagtataggtattggtggtaataatcc 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21 acctagatttagtttgagcggaaacaacacaaatagtataggtattggtggtaataatcc 80


Query: 152 tcaaaagagaccaccatcaagaacaccaggtagacaatcaattcaaccatcctcctttta 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 tcaaaagagaccaccatcaagaacaccaggtagacaatcaattcaaccatcctcctttta 140


Query: 212 cagcaacaatgaacgtacaaatccaataaattttaatactagtataaacaataacaaccc 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 cagcaacaatgaacgtacaaatccaataaattttaatactagtataaacaataacaaccc 200


Query: 272 agcatttttaaatgaaacaacaccaacattaaaacgttcatcacttagatactccatatc 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcatttttaaatgaaacaacaccaacattaaaacgttcatcacttagatactccatatc 260


Query: 332 tggagacacaagtcaaaactataataacaaacctcccctctc 373
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggagacacaagtcaaaactataataacaaacctcccctctc 302

Score = 337 bits (170), Expect(2) = 0.0
Identities = 170/170 (100%)
Strand = Plus / Plus


Query: 556 attatagaaagtacaaatccagctcaattatttgaaatgttgagtaatatgaaaagtttt 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 attatagaaagtacaaatccagctcaattatttgaaatgttgagtaatatgaaaagtttt 544


Query: 616 gttcaacatcaaccagatcaagcaatatctatactgattaattatcctcaaatgggttta 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gttcaacatcaaccagatcaagcaatatctatactgattaattatcctcaaatgggttta 604


Query: 676 gcattacttcatgctcaagtagttttaggtatgatttctcaaaatgctgc 725
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gcattacttcatgctcaagtagttttaggtatgatttctcaaaatgctgc 654

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,016,404,265
Number of extensions: 63249779
Number of successful extensions: 4669501
Number of sequences better than 10.0: 59
Length of query: 1697
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1673
Effective length of database: 97,308,875,965
Effective search space: 162797749489445
Effective search space used: 162797749489445
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 9
Homology vs Protein
Query= Contig-U13963-1 (Contig-U13963-1Q) /CSM_Contig/Contig-U13963-1Q.Seq.d
(1697 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AL671915_5(AL671915|pid:none) Mouse DNA sequence from clone RP23... 52 7e-05
(Q5RDA3) RecName: Full=Cleavage stimulation factor 64 kDa subuni... 52 7e-05
BC126543_1(BC126543|pid:none) Bos taurus cleavage stimulation fa... 52 7e-05
Z95327_4(Z95327|pid:none) Human DNA sequence from clone RP3-347M... 52 7e-05
(Q8HXM1) RecName: Full=Cleavage stimulation factor 64 kDa subuni... 52 7e-05
CR954201_559(CR954201|pid:none) Ostreococcus tauri strain OTTH05... 52 7e-05
EU616680_1(EU616680|pid:none) Mus musculus betaCstF-64 variant 3... 52 7e-05
EU616682_1(EU616682|pid:none) Mus musculus betaCstF-64 variant 1... 52 7e-05
AJ719664_1(AJ719664|pid:none) Gallus gallus mRNA for hypothetica... 52 7e-05
BC033135_1(BC033135|pid:none) Homo sapiens, Similar to cleavage ... 52 7e-05
AK032817_1(AK032817|pid:none) Mus musculus 12 days embryo male w... 52 7e-05
BC041291_1(BC041291|pid:none) Xenopus laevis cleavage stimulatio... 52 7e-05
BC065442_1(BC065442|pid:none) Danio rerio cleavage stimulation f... 51 1e-04
FN357586_4(FN357586|pid:none) Schistosoma mansoni genome sequenc... 50 3e-04
DQ497201_1(DQ497201|pid:none) Bombyx mori cleavage stimulation f... 49 4e-04
AB174477_1(AB174477|pid:none) Macaca fascicularis brain cDNA clo... 47 0.002
(Q9H0L4) RecName: Full=Cleavage stimulation factor 64 kDa subuni... 47 0.002
(Q8C7E9) RecName: Full=Cleavage stimulation factor 64 kDa subuni... 47 0.002
BC028239_1(BC028239|pid:none) Homo sapiens cleavage stimulation ... 47 0.002
BC169065_1(BC169065|pid:none) Rattus norvegicus cleavage stimula... 47 0.002
AK084696_1(AK084696|pid:none) Mus musculus 13 days embryo heart ... 47 0.002
BT078002_1(BT078002|pid:none) Lepeophtheirus salmonis Pacific fo... 47 0.003
AE017349_13(AE017349|pid:none) Cryptococcus neoformans var. neof... 44 0.018
AM270269_36(AM270269|pid:none) Aspergillus niger contig An12c013... 43 0.031
AP007171_669(AP007171|pid:none) Aspergillus oryzae RIB40 genomic... 42 0.069
T22767(T22767) hypothetical protein F56A8.6 - Caenorhabditis ele... 40 0.26
BT004860_1(BT004860|pid:none) Drosophila melanogaster RE27227 fu... 40 0.26
AE014297_2648(AE014297|pid:none) Drosophila melanogaster chromos... 40 0.26
AC120539_27(AC120539|pid:none) Oryza sativa (japonica cultivar-g... 39 0.44
AM920431_1049(AM920431|pid:none) Penicillium chrysogenum Wiscons... 38 0.99
CU928168_173(CU928168|pid:none) Kluyveromyces thermotolerans str... 37 2.9
AM437456_4(AM437456|pid:none) Vitis vinifera contig VV78X188142.... 35 8.4

>AL671915_5(AL671915|pid:none) Mouse DNA sequence from clone
RP23-182N4 on chromosome X Contains a prohibitin (Phb)
pseudogene, the Cstf2 gene for cleavage stimulation
factor 3' pre-RNA subunit 2, the Nox1 gene for NADPH
oxidase 1, the Xkrx gene for X Kell blood group
precursor related X linked, the 5' end of the Arl13a
gene for ADP-ribosylation factor-like 13A and a CpG
island, complete sequence.
&BC036719_1(BC036719|pid:none)
Length = 510

Score = 52.0 bits (123), Expect = 7e-05
Identities = 25/65 (38%), Positives = 40/65 (61%)
Frame = +1

Query: 544 AIQNIIESTNPAQLFEMLSNMKSFVQHQPDQAISILINYPQMGLALLHAQVVLGMISQNA 723
+I + S P Q+FE++ MK VQ+ P +A ++L+ PQ+ ALL AQVV+ ++
Sbjct: 127 SISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVDPEI 186

Query: 724 ATQIL 738
A +IL
Sbjct: 187 ALKIL 191

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,266,375,977
Number of extensions: 15581149
Number of successful extensions: 37131
Number of sequences better than 10.0: 32
Number of HSP's gapped: 37111
Number of HSP's successfully gapped: 32
Length of query: 565
Length of database: 1,051,180,864
Length adjustment: 134
Effective length of query: 431
Effective length of database: 617,481,958
Effective search space: 266134723898
Effective search space used: 266134723898
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.75 gvh: 0.25 alm: 0.38 top: 0.53 tms: 0.00 mit: 0.17 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
32.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for Contig-U13963-1 is nuc

VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 1
SL (DIR, L) 2
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 0
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0