Contig-U13963-1 |
Contig ID |
Contig-U13963-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
no gap |
Contig length |
1697 |
Chromosome number (1..6, M) |
- |
Chromosome length |
- |
Start point |
- |
End point |
- |
Strand (PLUS/MINUS) |
- |
Number of clones |
7 |
Number of EST |
12 |
Link to clone list |
U13963 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.12.16 |
Homology vs DNA |
Query= Contig-U13963-1 (Contig-U13963-1Q) /CSM_Contig/Contig-U13963-1Q.Seq.d (1697 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ359444) Dictyostelium discoideum cDNA clone:ddc14p18, 5' ... 559 0.0 2 (BJ327332) Dictyostelium discoideum cDNA clone:dda20f01, 5' ... 398 e-178 2 (BJ388347) Dictyostelium discoideum cDNA clone:dds9h04, 5' e... 559 e-167 2 (BJ372880) Dictyostelium discoideum cDNA clone:ddc14p18, 3' ... 260 e-118 4 (AU269517) Dictyostelium discoideum vegetative cDNA clone:VS... 379 e-100 1 (AU054024) Dictyostelium discoideum slug cDNA, clone SLK440. 379 e-100 1 (AU269518) Dictyostelium discoideum vegetative cDNA clone:VS... 367 9e-97 1 (AU061797) Dictyostelium discoideum slug cDNA, clone SLG126. 359 2e-94 1 (BJ344656) Dictyostelium discoideum cDNA clone:dda20f01, 3' ... 236 3e-66 2 (AM055582) Polyplastron multivesiculatum EST, clone Pm07_D01. 38 0.015 2 (AY428796) Dictyostelium discoideum DIF insensitive mutant A... 52 0.071 1 (BX511137) Zebrafish DNA sequence from clone DKEY-192A11 in ... 50 0.28 1 (AY653733) Acanthamoeba polyphaga mimivirus, complete genome. 50 0.28 1 (BJ440993) Dictyostelium discoideum cDNA clone:ddv45i07, 3' ... 48 0.33 2 (BJ344192) Dictyostelium discoideum cDNA clone:dda18p17, 3' ... 48 0.35 2 (AY232269) Dictyostelium discoideum putative protein Roco7 (... 48 0.50 3 (CW953278) TcB39.2_C10_SP6 Tribolium BAC library Tribolium c... 42 0.77 3 (AL954672) Zebrafish DNA sequence from clone CH211-237K3 in ... 48 1.1 1 (CP000500) Pichia stipitis CBS 6054 chromosome 6, complete s... 48 1.1 1 (AY191018) Dictyostelium discoideum autophagy protein 4 (apg... 48 1.1 1 (AF163834) Dictyostelium discoideum developmental protein DG... 48 1.1 1 (AF079445) Dictyostelium discoideum TipC (tipC) gene, comple... 48 1.1 1 (AE014852) Plasmodium falciparum 3D7 chromosome 12, section ... 48 1.1 1 (AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 48 1.1 1 (AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 48 1.1 1 (AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 48 1.1 1 (AC116330) Dictyostelium discoideum chromosome 2 map 3191214... 48 1.1 1 (AC115684) Dictyostelium discoideum chromosome 2 map 3108975... 48 1.1 1 (AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 48 1.1 1 (AC114263) Dictyostelium discoideum chromosome 2 map 215673-... 48 1.1 1 (AC151874) Didelphis virginiana clone LB3-236F8, WORKING DRA... 48 1.1 1 (AC148752) Didelphis virginiana clone LB3-171C2, WORKING DRA... 48 1.1 1 (AC140955) Didelphis virginiana clone LB3-197O4, WORKING DRA... 48 1.1 1 (AC140156) Didelphis virginiana clone LB3-20F15, WORKING DRA... 48 1.1 1 (AC139599) Didelphis virginiana clone LB3-206D4, WORKING DRA... 48 1.1 1 (AC139121) Didelphis virginiana clone LB3-39J13, WORKING DRA... 48 1.1 1 (AC120504) Didelphis virginiana clone LB3-33C20, WORKING DRA... 48 1.1 1 (AC231466) Choloepus hoffmanni clone CH281-360O8, WORKING DR... 48 1.1 1 (AC006279) Plasmodium falciparum chromosome 12 clone 3D7, **... 48 1.1 1 (EK259605) 1095462099107 Global-Ocean-Sampling_GS-31-01-01-1... 48 1.1 1 (AU052816) Dictyostelium discoideum slug cDNA, clone SLF150. 48 1.1 1 (AU034148) Dictyostelium discoideum slug cDNA, clone SLC101. 48 1.1 1 (AU033965) Dictyostelium discoideum slug cDNA, clone SLB668. 48 1.1 1 (BJ441802) Dictyostelium discoideum cDNA clone:ddv47m22, 3' ... 48 1.1 1 (BJ369459) Dictyostelium discoideum cDNA clone:ddc50l13, 5' ... 48 1.1 1 (BG603506) EST502596 Plasmodium yoelii sporozoite cDNA Plasm... 48 1.1 1 (AC104590) Homo sapiens chromosome 15, clone RP11-643M14, co... 46 4.4 1 (AC009554) Homo sapiens, clone RP11-16B9, complete sequence. 46 4.4 1 (AC132042) Rattus norvegicus clone CH230-341F22, WORKING DRA... 46 4.4 1 (AC230473) Bos taurus clone CH240-507H23, WORKING DRAFT SEQU... 46 4.4 1 (AC222986) Bos taurus clone CH240-432P4, WORKING DRAFT SEQUE... 46 4.4 1 (AC172484) Bos taurus clone CH240-145F2, WORKING DRAFT SEQUE... 46 4.4 1 (EJ960506) 1093022000127 Global-Ocean-Sampling_GS-30-02-01-1... 46 4.4 1 (EJ860999) 1093017977076 Global-Ocean-Sampling_GS-30-02-01-1... 46 4.4 1 (AM625249) Entamoeba dispar GSS, clone dispar116a12.q1k. 46 4.4 1 (CE649225) tigr-gss-dog-17000367323614 Dog Library Canis lup... 46 4.4 1 (BX132092) Danio rerio genomic clone DKEY-93K2, genomic surv... 46 4.4 1 (AU072285) Dictyostelium discoideum slug cDNA, clone SSE105. 46 4.4 1 (AC107325) Drosophila melanogaster clone RP98-21G15, WORKING... 40 6.4 3
>(BJ359444) Dictyostelium discoideum cDNA clone:ddc14p18, 5' end, single read. Length = 654
Score = 559 bits (282), Expect(2) = 0.0 Identities = 282/282 (100%) Strand = Plus / Plus
Query: 92 acctagatttagtttgagcggaaacaacacaaatagtataggtattggtggtaataatcc 151 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 21 acctagatttagtttgagcggaaacaacacaaatagtataggtattggtggtaataatcc 80
Query: 152 tcaaaagagaccaccatcaagaacaccaggtagacaatcaattcaaccatcctcctttta 211 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 81 tcaaaagagaccaccatcaagaacaccaggtagacaatcaattcaaccatcctcctttta 140
Query: 212 cagcaacaatgaacgtacaaatccaataaattttaatactagtataaacaataacaaccc 271 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 141 cagcaacaatgaacgtacaaatccaataaattttaatactagtataaacaataacaaccc 200
Query: 272 agcatttttaaatgaaacaacaccaacattaaaacgttcatcacttagatactccatatc 331 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 201 agcatttttaaatgaaacaacaccaacattaaaacgttcatcacttagatactccatatc 260
Query: 332 tggagacacaagtcaaaactataataacaaacctcccctctc 373 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 261 tggagacacaagtcaaaactataataacaaacctcccctctc 302
Score = 337 bits (170), Expect(2) = 0.0 Identities = 170/170 (100%) Strand = Plus / Plus
Query: 556 attatagaaagtacaaatccagctcaattatttgaaatgttgagtaatatgaaaagtttt 615 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 485 attatagaaagtacaaatccagctcaattatttgaaatgttgagtaatatgaaaagtttt 544
Query: 616 gttcaacatcaaccagatcaagcaatatctatactgattaattatcctcaaatgggttta 675 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 545 gttcaacatcaaccagatcaagcaatatctatactgattaattatcctcaaatgggttta 604
Query: 676 gcattacttcatgctcaagtagttttaggtatgatttctcaaaatgctgc 725 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 605 gcattacttcatgctcaagtagttttaggtatgatttctcaaaatgctgc 654
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,016,404,265 Number of extensions: 63249779 Number of successful extensions: 4669501 Number of sequences better than 10.0: 59 Length of query: 1697 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1673 Effective length of database: 97,308,875,965 Effective search space: 162797749489445 Effective search space used: 162797749489445 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7. 9 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
1 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
1 |
SL (DIR, L) |
2 |
SS (DIR, S) |
1 |
SH (FL, L) |
0 |
SF (FL, S) |
1 |
CH (FL, L) |
0 |
CF (FL, S) |
1 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |