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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U13956-1
Contig ID Contig-U13956-1
Contig update 2002.12.18
Contig sequence 
>Contig-U13956-1 (Contig-U13956-1Q) /CSM_Contig/Contig-U13956-1Q.Seq.d
GATAACACAATTTATATTATTACATTTTGAAGAGAATAGAGGTTGGGAAA
GAGTATTTATTTATGAAGATCTATTTTTATTATTCCCATTGGAGGTTAGA
AATGAATTGATTAAAATATCAACCATTATATTAGAATCACAATATAAAGA
GACAAGTTTCATTCAACCATCAACAGACTTACCATTGATTAAACATATTC
AACAAAATTTACCAATTAGTCAATTATTGAAACAACAACCTCAACAATAT
CAATTAATTTTAAATCGAGAATCTAGTGGTACCAACAAAGCTGTGTTGAT
CAATGATGATAATCTTGATAATATTCTATTTCAAGAATCATTCACTGATA
TCATTATTAATATTTTAAGTACTTATGAAGATTCAAATCCAATTTCAAAT
AGTTTTATATTATCTCTATTTAAACAATTATCAATGTTTAATCAATTCTC
AAAGGGTGGCGTTTTGGATACTATAAATTTGGATTCAACATTATCAGAGA
TTGTAATTCAATCAGTCGTCATTAGAATTACATTTTTAATCACTCAAATT
AAGAATTGTAAATTAATTGTAAAACAATCAACTCAAAAACTCGAAGAGAT
TTCAGTTACCCTCTTAAATTTACTCTCGAAATTCATCATTCAATCAGACG
GTGAATTCAATTTATTCGATCCAATTTTAACAATTTTTGATTTAATTTTA
TCTGATAAATTTGGTAATGATAATATTTTAAATTATTCATCATCGTCTTC
GTCGACTACTACAACTTCAACAACTTCAACACCAGTAACTTCATCACCTT
CAACTACCACCACAGCAACAACAAATCAACAACAGCAACAACAACAACAA
CAACAAGCTGATCAA
Gap no gap
Contig length 865
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 4313689
End point 4312825
Strand (PLUS/MINUS) MINUS
Number of clones 3
Number of EST 3
Link to clone list U13956
List of clone(s) 

est1=VHE840F,1,646
est2=AFI844F,144,792
est3=CHO114F,253,865
Translated Amino Acid sequence 
ITQFILLHFEENRGWERVFIYEDLFLLFPLEVRNELIKISTIILESQYKETSFIQPSTDL
PLIKHIQQNLPISQLLKQQPQQYQLILNRESSGTNKAVLINDDNLDNILFQESFTDIIIN
ILSTYEDSNPISNSFILSLFKQLSMFNQFSKGGVLDTINLDSTLSEIVIQSVVIRITFLI
TQIKNCKLIVKQSTQKLEEISVTLLNLLSKFIIQSDGEFNLFDPILTIFDLILSDKFGND
NILNYSSSSSSTTTTSTTSTPVTSSPSTTTTATTNQQQQQQQQQQADQ
Translated Amino Acid sequence (All Frames) 
Frame A:
dntiyiitf*re*rlgksiyl*rsifiipigg*k*id*ninhyiriti*rdkfhstinrl
tid*tystkftn*siietttstisinfksri*wyqqscvdq***s**ysisriih*yhy*
yfkyl*rfksnfk*fyiisi*tiinv*silkgwrfgyykfgfniirdcnsisrh*nyifn
hsn*el*incktinsktrrdfsyplkftleihhsirr*iqfirsnfnnf*fnfi**iw**
*yfklfiivfvdyynfnnfntsnfitfnyhhsnnksttatttttts*s


Frame B:
ITQFILLHFEENRGWERVFIYEDLFLLFPLEVRNELIKISTIILESQYKETSFIQPSTDL
PLIKHIQQNLPISQLLKQQPQQYQLILNRESSGTNKAVLINDDNLDNILFQESFTDIIIN
ILSTYEDSNPISNSFILSLFKQLSMFNQFSKGGVLDTINLDSTLSEIVIQSVVIRITFLI
TQIKNCKLIVKQSTQKLEEISVTLLNLLSKFIIQSDGEFNLFDPILTIFDLILSDKFGND
NILNYSSSSSSTTTTSTTSTPVTSSPSTTTTATTNQQQQQQQQQQADQ


Frame C:
*hnlyyyilkrievgkeylfmkiyfyyshwrlemn*lkyqply*nhnikrqvsfnhqqty
h*lnifnkiyqlvny*nnnlnnin*f*ienlvvptklc*smmiiliifyfknhslislli
f*vlmkiqiqfqivlyylylnnyqclinsqrvafwil*iwiqhyqrl*fnqsslelhf*s
lklrivn*l*nnqlknskrfqlps*iysrnssfnqtvnsiysiqf*qfli*fylinlvmi
if*iihhrlrrllqlqqlqhq*lhhlqlppqqqqinnsnnnnnnkli
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U13956-1 (Contig-U13956-1Q)
/CSM_Contig/Contig-U13956-1Q.Seq.d
         (865 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13956-1 (Contig-U13956-1Q) /CSM_Contig/Conti...  1332  0.0
Contig-U13393-1 (Contig-U13393-1Q) /CSM_Contig/Conti...    48  2e-05
Contig-U05244-1 (Contig-U05244-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U01212-1 (Contig-U01212-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U14885-1 (Contig-U14885-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U13828-1 (Contig-U13828-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U12543-1 (Contig-U12543-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U12179-1 (Contig-U12179-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U06745-1 (Contig-U06745-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U06231-1 (Contig-U06231-1Q) /CSM_Contig/Conti...    40  0.004

>Contig-U13956-1 (Contig-U13956-1Q) /CSM_Contig/Contig-U13956-1Q.Seq.d
          Length = 865

 Score = 1332 bits (672), Expect = 0.0
 Identities = 672/672 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gataacacaatttatattattacattttgaagagaatagaggttgggaaagagtatttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gataacacaatttatattattacattttgaagagaatagaggttgggaaagagtatttat 60

                                                                       
Query: 61  ttatgaagatctatttttattattcccattggaggttagaaatgaattgattaaaatatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ttatgaagatctatttttattattcccattggaggttagaaatgaattgattaaaatatc 120

                                                                       
Query: 121 aaccattatattagaatcacaatataaagagacaagtttcattcaaccatcaacagactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaccattatattagaatcacaatataaagagacaagtttcattcaaccatcaacagactt 180

                                                                       
Query: 181 accattgattaaacatattcaacaaaatttaccaattagtcaattattgaaacaacaacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 accattgattaaacatattcaacaaaatttaccaattagtcaattattgaaacaacaacc 240

                                                                       
Query: 241 tcaacaatatcaattaattttaaatcgagaatctagtggtaccaacaaagctgtgttgat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcaacaatatcaattaattttaaatcgagaatctagtggtaccaacaaagctgtgttgat 300

                                                                       
Query: 301 caatgatgataatcttgataatattctatttcaagaatcattcactgatatcattattaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 caatgatgataatcttgataatattctatttcaagaatcattcactgatatcattattaa 360

                                                                       
Query: 361 tattttaagtacttatgaagattcaaatccaatttcaaatagttttatattatctctatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tattttaagtacttatgaagattcaaatccaatttcaaatagttttatattatctctatt 420

                                                                       
Query: 421 taaacaattatcaatgtttaatcaattctcaaagggtggcgttttggatactataaattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 taaacaattatcaatgtttaatcaattctcaaagggtggcgttttggatactataaattt 480

                                                                       
Query: 481 ggattcaacattatcagagattgtaattcaatcagtcgtcattagaattacatttttaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ggattcaacattatcagagattgtaattcaatcagtcgtcattagaattacatttttaat 540

                                                                       
Query: 541 cactcaaattaagaattgtaaattaattgtaaaacaatcaactcaaaaactcgaagagat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cactcaaattaagaattgtaaattaattgtaaaacaatcaactcaaaaactcgaagagat 600

                                                                       
Query: 601 ttcagttaccctcttaaatttactctcgaaattcatcattcaatcagacggtgaattcaa 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttcagttaccctcttaaatttactctcgaaattcatcattcaatcagacggtgaattcaa 660

                       
Query: 661 tttattcgatcc 672
           ||||||||||||
Sbjct: 661 tttattcgatcc 672


 Score =  161 bits (81), Expect = 2e-39
 Identities = 81/81 (100%)
 Strand = Plus / Plus

                                                                       
Query: 735 attcatcatcgtcttcgtcgactactacaacttcaacaacttcaacaccagtaacttcat 794
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 attcatcatcgtcttcgtcgactactacaacttcaacaacttcaacaccagtaacttcat 794

                                
Query: 795 caccttcaactaccaccacag 815
           |||||||||||||||||||||
Sbjct: 795 caccttcaactaccaccacag 815


>Contig-U13393-1 (Contig-U13393-1Q) /CSM_Contig/Contig-U13393-1Q.Seq.d
          Length = 657

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 761 acaacttcaacaacttcaacacca 784
           ||||||||||||||||||||||||
Sbjct: 11  acaacttcaacaacttcaacacca 34


 Score = 34.2 bits (17), Expect = 0.24
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                
Query: 761 acaacttcaacaacttcaaca 781
           |||||| ||||||||||||||
Sbjct: 2   acaactccaacaacttcaaca 22


>Contig-U05244-1 (Contig-U05244-1Q) /CSM_Contig/Contig-U05244-1Q.Seq.d
          Length = 996

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 761 acaacttcaacaacttcaaca 781
           |||||||||||||||||||||
Sbjct: 199 acaacttcaacaacttcaaca 219


 Score = 34.2 bits (17), Expect = 0.24
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                
Query: 761 acaacttcaacaacttcaaca 781
           ||||||||||||| |||||||
Sbjct: 208 acaacttcaacaagttcaaca 228


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,240
Number of Sequences: 6905
Number of extensions: 19240
Number of successful extensions: 2537
Number of sequences better than 10.0: 278
length of query: 865
length of database: 5,674,871
effective HSP length: 16
effective length of query: 849
effective length of database: 5,564,391
effective search space: 4724167959
effective search space used: 4724167959
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.16
Homology vs DNA 
Query= Contig-U13956-1 (Contig-U13956-1Q) /CSM_Contig/Contig-U13956-1Q.Seq.d
         (865 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ420797) Dictyostelium discoideum cDNA clone:ddv40p10, 5' ...  1281   0.0    1
(BJ326875) Dictyostelium discoideum cDNA clone:dda18h12, 5' ...  1041   0.0    1
(BJ369324) Dictyostelium discoideum cDNA clone:ddc50k03, 5' ...   821   0.0    2
(FE274446) m1032-1.seq differentially expressed sequences in...    46   1e-06  2
(FE274455) m105-1.seq differentially expressed sequences in ...    46   2e-06  2
(FE274682) m500-1.seq differentially expressed sequences in ...    46   2e-06  2
(FE274532) m1275-1.seq differentially expressed sequences in...    46   2e-06  2
(FE274600) m270-1.seq differentially expressed sequences in ...    44   5e-06  2
(FE274482) m1139-1.seq differentially expressed sequences in...    44   7e-06  2
(FE274612) m312-1.seq differentially expressed sequences in ...    50   1e-04  2
(CB014250) As_tgz_76F05_SKPL Ascaris suum adult male testis ...    44   2e-04  2
(BQ833965) Al_am_01C08_T3 Ascaris lumbricoides adult male wh...    50   3e-04  2
(BM278178) As_tgz_54C02_SKPL Ascaris suum adult male testis ...    44   3e-04  2
(BM277941) As_tgz_50G11_SKPL Ascaris suum adult male testis ...    44   3e-04  2
(BM278543) As_tgz_64A02_SKPL Ascaris suum adult male testis ...    44   3e-04  2
(BM278415) As_tgz_58F02_SKPL Ascaris suum adult male testis ...    44   3e-04  2
(FE274761) m769-1.seq differentially expressed sequences in ...    44   3e-04  2
(FE274779) m829_v-1.seq differentially expressed sequences i...    44   3e-04  2
(FE274639) m396-1.seq differentially expressed sequences in ...    44   3e-04  2
(FE274573) m2-1.seq differentially expressed sequences in ma...    44   3e-04  2
(BF050091) As_tgz_22F04_SKPL Ascaris suum adult male testis ...    44   3e-04  2
(CB013903) As_tgz_71G08_SKPL Ascaris suum adult male testis ...    44   4e-04  2
(BI594968) As_tgz_46G04_SKPL Ascaris suum adult male testis ...    44   4e-04  2
(CB014478) As_tgz_81B01_SKPL Ascaris suum adult male testis ...    44   4e-04  2
(BM278143) As_tgz_53G07_SKPL Ascaris suum adult male testis ...    44   4e-04  2
(BM277826) As_tgz_49B01_SKPL Ascaris suum adult male testis ...    44   4e-04  2
(BF228408) As_tgz_27D10_SKPL Ascaris suum adult male testis ...    44   4e-04  2
(BF049954) As_tgz_20A10_SKPL Ascaris suum adult male testis ...    44   4e-04  2
(FE274538) m129-1.seq differentially expressed sequences in ...    46   4e-04  2
(FE274476) m1123-1.seq differentially expressed sequences in...    50   4e-04  2
(FE274475) m1119-1.seq differentially expressed sequences in...    50   4e-04  2
(FE274485) m1141_v-1.seq differentially expressed sequences ...    44   5e-04  2
(BI594910) As_tgz_45H03_SKPL Ascaris suum adult male testis ...    52   7e-04  2
(BM278636) As_tgz_65C01_SKPL Ascaris suum adult male testis ...    52   0.001  2
(FE274442) m1002_v-1.seq differentially expressed sequences ...    50   0.001  2
(FE274490) m1155_v-1.seq differentially expressed sequences ...    50   0.001  2
(BI783045) kh45h12.y1 Ascaris suum male gut pAMP1 v2 Chiapel...    50   0.001  2
(BM278290) As_tgz_55G10_SKPL Ascaris suum adult male testis ...    52   0.001  2
(FE274785) m840_v-1.seq differentially expressed sequences i...    50   0.001  2
(FE274570) m197-1.seq differentially expressed sequences in ...    50   0.001  2
(FE274549) m1327-1.seq differentially expressed sequences in...    50   0.001  2
(CB014921) As_tgz_87C04_SKPL Ascaris suum adult male testis ...    52   0.001  2
(BM278684) As_tgz_65H08_SKPL Ascaris suum adult male testis ...    52   0.001  2
(CB013972) As_tgz_72F05_SKPL Ascaris suum adult male testis ...    52   0.001  2
(BM278692) As_tgz_66A08_SKPL Ascaris suum adult male testis ...    50   0.001  2
(BM278019) As_tgz_52A06_SKPL Ascaris suum adult male testis ...    52   0.001  2
(BF169345) As_tgz_24B05_SKPL Ascaris suum adult male testis ...    52   0.001  2
(BI782765) kh42a10.y1 Ascaris suum male gut pAMP1 v2 Chiapel...    50   0.001  2
(FE274452) m1043-1.seq differentially expressed sequences in...    50   0.001  2
(BF049985) As_tgz_20E10_SKPL Ascaris suum adult male testis ...    52   0.001  2
(BM278174) As_tgz_54B10_SKPL Ascaris suum adult male testis ...    50   0.001  2
(FE274619) m335-1.seq differentially expressed sequences in ...    50   0.001  2
(CB014811) As_tgz_85G02_SKPL Ascaris suum adult male testis ...    50   0.001  2
(BI594948) As_tgz_46D08_SKPL Ascaris suum adult male testis ...    50   0.001  2
(BF050073) As_tgz_22B06_SKPL Ascaris suum adult male testis ...    50   0.001  2
(BM278786) As_tgz_67D04_SKPL Ascaris suum adult male testis ...    50   0.001  2
(BM278129) As_tgz_53F02_SKPL Ascaris suum adult male testis ...    50   0.001  2
(CB014507) As_tgz_81D12_SKPL Ascaris suum adult male testis ...    50   0.001  2
(CB014280) As_tgz_77A09_SKPL Ascaris suum adult male testis ...    50   0.001  2
(CB014215) As_tgz_76B08_SKPL Ascaris suum adult male testis ...    50   0.002  2
(BM278198) As_tgz_54E03_SKPL Ascaris suum adult male testis ...    50   0.002  2
(BM278367) As_tgz_57F06_SKPL Ascaris suum adult male testis ...    50   0.002  2
(BM277859) As_tgz_49E12_SKPL Ascaris suum adult male testis ...    50   0.002  2
(FE274611) m302-1.seq differentially expressed sequences in ...    50   0.002  2
(FE274684) m510-1.seq differentially expressed sequences in ...    50   0.002  2
(FE274496) m1164_v-1.seq differentially expressed sequences ...    50   0.002  2
(FE274739) m672_v-1.seq differentially expressed sequences i...    50   0.002  2
(FE274461) m1066-1.seq differentially expressed sequences in...    50   0.002  2
(FE274586) m224-1.seq differentially expressed sequences in ...    50   0.002  2
(FE274678) m493_v-1.seq differentially expressed sequences i...    50   0.002  2
(CB014626) As_tgz_83B05_SKPL Ascaris suum adult male testis ...    50   0.002  2
(ED328193) AUAC-aah77b05.b1 Ascaris suum whole genome shotgu...    50   0.002  2
(ED444288) AUAC-aad65c06.b1 Ascaris suum whole genome shotgu...    50   0.002  2
(ED073004) AUAC-aak23a02.b1 Ascaris suum whole genome shotgu...    44   0.005  3
(BI594773) As_tgz_43G10_SKPL Ascaris suum adult male testis ...    46   0.005  2
(BI594803) As_tgz_44C11_SKPL Ascaris suum adult male testis ...    46   0.005  2
(CB014796) As_tgz_85E08_SKPL Ascaris suum adult male testis ...    46   0.005  2
(FE274673) m487-1.seq differentially expressed sequences in ...    50   0.005  2
(BM278805) As_tgz_67F10_SKPL Ascaris suum adult male testis ...    50   0.005  2
(CB014244) As_tgz_76E09_SKPL Ascaris suum adult male testis ...    50   0.005  2
(FE274732) m658-1.seq differentially expressed sequences in ...    46   0.005  2
(CB014039) As_tgz_73E01_SKPL Ascaris suum adult male testis ...    46   0.005  2
(FE274664) m473-1.seq differentially expressed sequences in ...    46   0.005  2
(CB014097) As_tgz_74C12_SKPL Ascaris suum adult male testis ...    50   0.005  2
(CB013941) As_tgz_72C03_SKPL Ascaris suum adult male testis ...    50   0.005  2
(FE274734) m664_v-1.seq differentially expressed sequences i...    46   0.006  2
(BM277996) As_tgz_51F02_SKPL Ascaris suum adult male testis ...    50   0.006  2
(FE274735) m666-1.seq differentially expressed sequences in ...    46   0.006  2
(FE274713) m603-1.seq differentially expressed sequences in ...    46   0.006  2
(FE274526) m1259-1.seq differentially expressed sequences in...    46   0.006  2
(FE274603) m275_v-1.seq differentially expressed sequences i...    46   0.006  2
(CB014210) As_tgz_76B03_SKPL Ascaris suum adult male testis ...    50   0.006  2
(BM278273) As_tgz_55F01_SKPL Ascaris suum adult male testis ...    50   0.006  2
(FE274571) m198-1.seq differentially expressed sequences in ...    46   0.006  2
(BM278689) As_tgz_66A05_SKPL Ascaris suum adult male testis ...    46   0.006  2
(CB014810) As_tgz_85F12_SKPL Ascaris suum adult male testis ...    46   0.006  2
(FE274663) m472-1.seq differentially expressed sequences in ...    46   0.006  2
(CB014240) As_tgz_76E03_SKPL Ascaris suum adult male testis ...    46   0.006  2
(CB014904) As_tgz_87A05_SKPL Ascaris suum adult male testis ...    46   0.006  2
(CB013983) As_tgz_72G04_SKPL Ascaris suum adult male testis ...    46   0.006  2

>(BJ420797) Dictyostelium discoideum cDNA clone:ddv40p10, 5' end,
           single read.
          Length = 646

 Score = 1281 bits (646), Expect = 0.0
 Identities = 646/646 (100%)
 Strand = Plus / Plus


Query: 1   gataacacaatttatattattacattttgaagagaatagaggttgggaaagagtatttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gataacacaatttatattattacattttgaagagaatagaggttgggaaagagtatttat 60


Query: 61  ttatgaagatctatttttattattcccattggaggttagaaatgaattgattaaaatatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ttatgaagatctatttttattattcccattggaggttagaaatgaattgattaaaatatc 120


Query: 121 aaccattatattagaatcacaatataaagagacaagtttcattcaaccatcaacagactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaccattatattagaatcacaatataaagagacaagtttcattcaaccatcaacagactt 180


Query: 181 accattgattaaacatattcaacaaaatttaccaattagtcaattattgaaacaacaacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 accattgattaaacatattcaacaaaatttaccaattagtcaattattgaaacaacaacc 240


Query: 241 tcaacaatatcaattaattttaaatcgagaatctagtggtaccaacaaagctgtgttgat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcaacaatatcaattaattttaaatcgagaatctagtggtaccaacaaagctgtgttgat 300


Query: 301 caatgatgataatcttgataatattctatttcaagaatcattcactgatatcattattaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 caatgatgataatcttgataatattctatttcaagaatcattcactgatatcattattaa 360


Query: 361 tattttaagtacttatgaagattcaaatccaatttcaaatagttttatattatctctatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tattttaagtacttatgaagattcaaatccaatttcaaatagttttatattatctctatt 420


Query: 421 taaacaattatcaatgtttaatcaattctcaaagggtggcgttttggatactataaattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 taaacaattatcaatgtttaatcaattctcaaagggtggcgttttggatactataaattt 480


Query: 481 ggattcaacattatcagagattgtaattcaatcagtcgtcattagaattacatttttaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ggattcaacattatcagagattgtaattcaatcagtcgtcattagaattacatttttaat 540


Query: 541 cactcaaattaagaattgtaaattaattgtaaaacaatcaactcaaaaactcgaagagat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cactcaaattaagaattgtaaattaattgtaaaacaatcaactcaaaaactcgaagagat 600


Query: 601 ttcagttaccctcttaaatttactctcgaaattcatcattcaatca 646
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttcagttaccctcttaaatttactctcgaaattcatcattcaatca 646

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 994,404,138
Number of extensions: 65279449
Number of successful extensions: 5544217
Number of sequences better than 10.0: 357
Length of query: 865
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 841
Effective length of database: 97,308,875,965
Effective search space: 81836764686565
Effective search space used: 81836764686565
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.10
Homology vs Protein 
Query= Contig-U13956-1 (Contig-U13956-1Q) /CSM_Contig/Contig-U13956-1Q.Seq.d
         (865 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000087_466(CP000087|pid:none) Rickettsia bellii RML369-C, comp...    35   3.2
CP000849_987(CP000849|pid:none) Rickettsia bellii OSU 85-389, co...    35   3.2
CP000382_278(CP000382|pid:none) Clostridium novyi NT, complete g...    35   3.2
AE017308_373(AE017308|pid:none) Mycoplasma mobile 163K complete ...    35   3.2
AM180355_30(AM180355|pid:none) Clostridium difficile 630 complet...    35   4.2
AL844507_149(AL844507|pid:none) Plasmodium falciparum 3D7 chromo...    34   5.5
CP000866_1609(CP000866|pid:none) Nitrosopumilus maritimus SCM1, ...    34   5.5

>CP000087_466(CP000087|pid:none) Rickettsia bellii RML369-C,
           complete genome.
          Length = 399

 Score = 35.0 bits (79), Expect = 3.2
 Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
 Frame = +2

Query: 284 NKAVLINDDNLDNILFQESFTDIIINILSTYEDSNPISNS-FILSLFKQLSMFNQFSKGG 460
           +K V  N D   NI    S  D + NI++ Y ++  I+    +LS  +Q    N+ +
Sbjct: 204 HKQVKFNSDPQKNI----SSDDKVNNIITIYGNNLGITTEKIVLSAIEQYENKNKLNLDN 259

Query: 461 VLDTINLDSTLSEIVIQSVVIRI--TFLITQIKNCKLIVKQSTQKLEEISVTLLNLLSKF 634
              T N    L+  +  S++ ++   F  T + N K IV   T+ LE+I +  LN+ +KF
Sbjct: 260 STKT-NATKILTNQLNDSLLNKLEKNFYPTLVINSKKIVDIITKGLEKIKINKLNIFNKF 318

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 956,500,918
Number of extensions: 15181762
Number of successful extensions: 38545
Number of sequences better than 10.0: 7
Number of HSP's gapped: 38494
Number of HSP's successfully gapped: 7
Length of query: 288
Length of database: 1,051,180,864
Length adjustment: 127
Effective length of query: 161
Effective length of database: 640,137,871
Effective search space: 103062197231
Effective search space used: 103062197231
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.75  gvh: 0.36  alm: 0.30  top: 0.80  tms: 0.07  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.08  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U13956-1 is nuc
VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0