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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U13949-1
Contig ID Contig-U13949-1
Contig update 2002.12.18
Contig sequence 
>Contig-U13949-1 (Contig-U13949-1Q) /CSM_Contig/Contig-U13949-1Q.Seq.d
TGGAAACACATCATCCCGTTCGATCTGATAAGTAAATCGACCTCAGGCCT
TCCAAGTACTCTGGTTGGAGACAACAGGGGAACATAGAGTGCTGTATACT
ATTCTTTAATGTTATATAACAATAGTGCGTTAGTCACACATTTTTCGATG
GTAACACTAAATAAAAGAACATTAGTTCAATATATGCAAATTATAGGTAT
TTTAGGTGTAATTAATTTACTTCTATCACTTTATATGGCATTTGGTGACA
TTGAAAGTGGAACATGTGATATCAATGCAACCCTATCCTGTACATCAGTA
ATCAAAAGTGAATATGGCAAAATATTTGGTGTACCAGTTTCATACTATGG
TATCACTTGGAATCTAGTTTTACTCTATTGTATTTGGAGAATTTATTTAG
AAGATAAAGTACCAGCATTTGTAACAACCAATTTTCATTTGGTGTTCAAT
TGGTATTGGTTTTGTATTTTATTTTATTGCAGCAGAATTAATAATTGGTA
AAATTTGTCCATTTTGTACATTAGTTCATATTATTAATGTAGCATTAATG
TATTTAGTATTTCAAGTTTATTGTCAACTTAAATCACCACCACCATTATT
TTTAGTAGCAAATTCATTGAAATCATTCATTGTGACAGTATTATTAGTGC
ATTTAATGTTAATATTATTTGTTAATGGTGGTAATACAAATGGTGGTGTT
GGTGGTGGTATCATAATTAATGGTATTAATAAAAAGATAACAAATGAATC
ATTTTCACAATGTTTAACAAGAATGAATATGGTAATGTTTGGTTCATCTT
CATGTGGTGCATGTATGAATCAAAAGAAATTATTCATGTTACCAGGTAAA
GATGAAACTGAATCACCATGGCATTATATTAAGTTTATCGAATGTCAAGA
TAGTGATAGAAACTTTAAAGAGGAATGTGAAAAATGGGGTATCAAACGTT
ACCCAACTTGGCATAAATTTGAAAATGATTATAAATCCTCAGAAAATAAA
ATTTTAGAAACTCATTCAGGTGTTATGGGCATTGCTGAACTTTCAAAAAT
GTCGGGTTGTCAATATCCTCTTAAAGAAAATAATTCAAATGAAAATGAAA
ATAATGATAATGATAATGAAAAAGATAAAATTATTAATAGAAATTAATAA
AAAAAATAAATAAAAAAAAAGTAAATTAATTTAATATAATAAAATTTAAA
TTTACAATATT
Gap no gap
Contig length 1211
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 3447000
End point 3448113
Strand (PLUS/MINUS) PLUS
Number of clones 4
Number of EST 5
Link to clone list U13949
List of clone(s) 

est1=CHB609E,1,1104
est2=CHC679F,106,673
est3=AFI317Z,460,1168
est4=CFH265Z,514,1212
est5=CHC679Z,846,1177
Translated Amino Acid sequence 
gntssrsi**vnrpqafqvlwlettgehrvlytil*cyitivr*shifrw*h*ikeh*fn
ickl*vf*v*liyfyhfiwhlvtlkvehvismqpypvhq*skvnmakylvyqfhtmvslg
i*fysivfgefi*kikyqhl*QPIFIWCSIGIGFVFYFIAAELIIGKICPFCTLVHIINV
ALMYLVFQVYCQLKSPPPLFLVANSLKSFIVTVLLVHLMLILFVNGGNTNGGVGGGIIIN
GINKKITNESFSQCLTRMNMVMFGSSSCGACMNQKKLFMLPGKDETESPWHYIKFIECQD
SDRNFKEECEKWGIKRYPTWHKFENDYKSSENKILETHSGVMGIAELSKMSGCQYPLKEN
NSNENENNDNDNEKDKIINRN**kk*ikkk*inli**nlnlqy
Translated Amino Acid sequence (All Frames) 
Frame A:
wkhiipfdliskstsglpstlvgdnrgt*savyyslmlynnsalvthfsmvtlnkrtlvq
ymqiigilgvinlllslymafgdiesgtcdinatlsctsvikseygkifgvpvsyygitw
nlvllyciwriyledkvpafvttnfhlvfnwywfcilfycsrinnw*nlsilyissyy*c
sinvfsissllst*itttiifsskfieiihcdsiisafnvniic*ww*ykwwcwwwyhn*
wy**kdnk*iiftmfnkneygnvwfifmwcmyeskeiihvtr*r*n*itmaly*vyrmsr
***kl*rgm*kmgyqtlpnla*i*k*l*ilrk*nfrnsfrcyghc*tfknvglsiss*rk
*fk*k*k******kr*ny**klikkinkkkvn*fniikfkfti


Frame B:
gntssrsi**vnrpqafqvlwlettgehrvlytil*cyitivr*shifrw*h*ikeh*fn
ickl*vf*v*liyfyhfiwhlvtlkvehvismqpypvhq*skvnmakylvyqfhtmvslg
i*fysivfgefi*kikyqhl*QPIFIWCSIGIGFVFYFIAAELIIGKICPFCTLVHIINV
ALMYLVFQVYCQLKSPPPLFLVANSLKSFIVTVLLVHLMLILFVNGGNTNGGVGGGIIIN
GINKKITNESFSQCLTRMNMVMFGSSSCGACMNQKKLFMLPGKDETESPWHYIKFIECQD
SDRNFKEECEKWGIKRYPTWHKFENDYKSSENKILETHSGVMGIAELSKMSGCQYPLKEN
NSNENENNDNDNEKDKIINRN**kk*ikkk*inli**nlnlqy


Frame C:
ethhpvrsdk*idlrpskysgwrqqgnieccilffnvi*q*cvshtffdgntk*knissi
yanyryfrcn*ftsitlygiw*h*kwnm*yqcnpilyisnqk*iwqniwctsfilwyhle
ssftllylenlfrr*stsicnnqfsfgvqlvlvlyfillqqn**lvkfvhfvh*fillm*
h*ci*yfkfivnlnhhhhyf**qih*nhsl*qyy*ci*c*yyllmvviqmvvlvvvs*lm
vlikr*qmnhfhnv*qe*iw*clvhlhvvhv*ikrnyscyqvkmklnhhgiilslsnvki
vietlkrnvkngvsnvtqlginlkmiinpqkikf*kliqvlwallnfqkcrvvnillkki
iqmkmkimimimkkikllieinkknk*kkskli*ynki*iyni
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U13949-1 (Contig-U13949-1Q)
/CSM_Contig/Contig-U13949-1Q.Seq.d
         (1211 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13949-1 (Contig-U13949-1Q) /CSM_Contig/Conti...  2121  0.0
Contig-U11551-1 (Contig-U11551-1Q) /CSM_Contig/Conti...   196  4e-50
Contig-U12475-1 (Contig-U12475-1Q) /CSM_Contig/Conti...   192  6e-49
Contig-U12682-1 (Contig-U12682-1Q) /CSM_Contig/Conti...   188  1e-47
Contig-U14176-1 (Contig-U14176-1Q) /CSM_Contig/Conti...   131  2e-30
Contig-U10149-1 (Contig-U10149-1Q) /CSM_Contig/Conti...   107  3e-23
Contig-U11923-1 (Contig-U11923-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U13938-1 (Contig-U13938-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U13633-1 (Contig-U13633-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U11541-1 (Contig-U11541-1Q) /CSM_Contig/Conti...    40  0.005

>Contig-U13949-1 (Contig-U13949-1Q) /CSM_Contig/Contig-U13949-1Q.Seq.d
          Length = 1211

 Score = 2121 bits (1070), Expect = 0.0
 Identities = 1070/1070 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1    tggaaacacatcatcccgttcgatctgataagtaaatcgacctcaggccttccaagtact 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    tggaaacacatcatcccgttcgatctgataagtaaatcgacctcaggccttccaagtact 60

                                                                        
Query: 61   ctggttggagacaacaggggaacatagagtgctgtatactattctttaatgttatataac 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   ctggttggagacaacaggggaacatagagtgctgtatactattctttaatgttatataac 120

                                                                        
Query: 121  aatagtgcgttagtcacacatttttcgatggtaacactaaataaaagaacattagttcaa 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  aatagtgcgttagtcacacatttttcgatggtaacactaaataaaagaacattagttcaa 180

                                                                        
Query: 181  tatatgcaaattataggtattttaggtgtaattaatttacttctatcactttatatggca 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  tatatgcaaattataggtattttaggtgtaattaatttacttctatcactttatatggca 240

                                                                        
Query: 241  tttggtgacattgaaagtggaacatgtgatatcaatgcaaccctatcctgtacatcagta 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  tttggtgacattgaaagtggaacatgtgatatcaatgcaaccctatcctgtacatcagta 300

                                                                        
Query: 301  atcaaaagtgaatatggcaaaatatttggtgtaccagtttcatactatggtatcacttgg 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  atcaaaagtgaatatggcaaaatatttggtgtaccagtttcatactatggtatcacttgg 360

                                                                        
Query: 361  aatctagttttactctattgtatttggagaatttatttagaagataaagtaccagcattt 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361  aatctagttttactctattgtatttggagaatttatttagaagataaagtaccagcattt 420

                                                                        
Query: 421  gtaacaaccaattttcatttggtgttcaattggtattggttttgtattttattttattgc 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421  gtaacaaccaattttcatttggtgttcaattggtattggttttgtattttattttattgc 480

                                                                        
Query: 481  agcagaattaataattggtaaaatttgtccattttgtacattagttcatattattaatgt 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  agcagaattaataattggtaaaatttgtccattttgtacattagttcatattattaatgt 540

                                                                        
Query: 541  agcattaatgtatttagtatttcaagtttattgtcaacttaaatcaccaccaccattatt 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  agcattaatgtatttagtatttcaagtttattgtcaacttaaatcaccaccaccattatt 600

                                                                        
Query: 601  tttagtagcaaattcattgaaatcattcattgtgacagtattattagtgcatttaatgtt 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601  tttagtagcaaattcattgaaatcattcattgtgacagtattattagtgcatttaatgtt 660

                                                                        
Query: 661  aatattatttgttaatggtggtaatacaaatggtggtgttggtggtggtatcataattaa 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661  aatattatttgttaatggtggtaatacaaatggtggtgttggtggtggtatcataattaa 720

                                                                        
Query: 721  tggtattaataaaaagataacaaatgaatcattttcacaatgtttaacaagaatgaatat 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721  tggtattaataaaaagataacaaatgaatcattttcacaatgtttaacaagaatgaatat 780

                                                                        
Query: 781  ggtaatgtttggttcatcttcatgtggtgcatgtatgaatcaaaagaaattattcatgtt 840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781  ggtaatgtttggttcatcttcatgtggtgcatgtatgaatcaaaagaaattattcatgtt 840

                                                                        
Query: 841  accaggtaaagatgaaactgaatcaccatggcattatattaagtttatcgaatgtcaaga 900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841  accaggtaaagatgaaactgaatcaccatggcattatattaagtttatcgaatgtcaaga 900

                                                                        
Query: 901  tagtgatagaaactttaaagaggaatgtgaaaaatggggtatcaaacgttacccaacttg 960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901  tagtgatagaaactttaaagaggaatgtgaaaaatggggtatcaaacgttacccaacttg 960

                                                                        
Query: 961  gcataaatttgaaaatgattataaatcctcagaaaataaaattttagaaactcattcagg 1020
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961  gcataaatttgaaaatgattataaatcctcagaaaataaaattttagaaactcattcagg 1020

                                                              
Query: 1021 tgttatgggcattgctgaactttcaaaaatgtcgggttgtcaatatcctc 1070
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 tgttatgggcattgctgaactttcaaaaatgtcgggttgtcaatatcctc 1070


>Contig-U11551-1 (Contig-U11551-1Q) /CSM_Contig/Contig-U11551-1Q.Seq.d
          Length = 2135

 Score =  196 bits (99), Expect = 4e-50
 Identities = 102/103 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggaaacacatcatcccgttcgatctgataagtaaatcgacctcaggccttccaagtact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20  tggaaacacatcatcccgttcgatctgataagtaaatcgacctcaggccttccaagtact 79

                                                      
Query: 61  ctggttggagacaacaggggaacatagagtgctgtatactatt 103
           ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 80  ctggttggagacaacaggggaacatagggtgctgtatactatt 122


>Contig-U12475-1 (Contig-U12475-1Q) /CSM_Contig/Contig-U12475-1Q.Seq.d
          Length = 1317

 Score =  192 bits (97), Expect = 6e-49
 Identities = 100/101 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggaaacacatcatcccgttcgatctgataagtaaatcgacctcaggccttccaagtact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21  tggaaacacatcatcccgttcgatctgataagtaaatcgacctcaggccttccaagtact 80

                                                    
Query: 61  ctggttggagacaacaggggaacatagagtgctgtatacta 101
           ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 81  ctggttggagacaacaggggaacatagggtgctgtatacta 121


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,441
Number of Sequences: 6905
Number of extensions: 21441
Number of successful extensions: 3287
Number of sequences better than 10.0: 398
length of query: 1211
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1195
effective length of database: 5,564,391
effective search space: 6649447245
effective search space used: 6649447245
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.16
Homology vs DNA 
Query= Contig-U13949-1 (Contig-U13949-1Q) /CSM_Contig/Contig-U13949-1Q.Seq.d
         (1211 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ377602) Dictyostelium discoideum cDNA clone:ddc25a04, 3' ...  1302   0.0    1
(BJ343732) Dictyostelium discoideum cDNA clone:dda17b05, 3' ...  1213   0.0    1
(BJ373043) Dictyostelium discoideum cDNA clone:ddc15a18, 3' ...  1106   0.0    1
(BJ363077) Dictyostelium discoideum cDNA clone:ddc25a04, 5' ...   848   0.0    2
(BJ363678) Dictyostelium discoideum cDNA clone:ddc27m20, 5' ...   640   0.0    2
(AF474345) Dictyostelium discoideum ABC transporter ABCC.13 ...   476   e-129  1
(BJ378215) Dictyostelium discoideum cDNA clone:ddc27m20, 3' ...   289   5e-96  2
(BJ363622) Dictyostelium discoideum cDNA clone:ddc27j15, 5' ...   198   3e-46  1
(BJ408039) Dictyostelium discoideum cDNA clone:dds44b16, 3' ...   196   1e-45  1
(BJ396935) Dictyostelium discoideum cDNA clone:dds44b16, 5' ...   196   1e-45  1
(BJ395509) Dictyostelium discoideum cDNA clone:dds39k01, 5' ...   196   1e-45  1
(BJ394327) Dictyostelium discoideum cDNA clone:dds34n18, 5' ...   196   1e-45  1
(BJ390844) Dictyostelium discoideum cDNA clone:dds23m23, 5' ...   196   1e-45  1
(BJ368837) Dictyostelium discoideum cDNA clone:ddc48d07, 5' ...   196   1e-45  1
(BJ365314) Dictyostelium discoideum cDNA clone:ddc34m20, 5' ...   196   1e-45  1
(BJ360406) Dictyostelium discoideum cDNA clone:ddc5n23, 5' e...   196   1e-45  1
(BJ332635) Dictyostelium discoideum cDNA clone:dda39e23, 5' ...   196   1e-45  1
(BJ324103) Dictyostelium discoideum cDNA clone:dda4d21, 5' e...   196   1e-45  1
(BJ365187) Dictyostelium discoideum cDNA clone:ddc34m11, 5' ...   194   5e-45  1
(BJ337055) Dictyostelium discoideum cDNA clone:dda56h02, 5' ...   194   5e-45  1
(BJ367703) Dictyostelium discoideum cDNA clone:ddc43n15, 5' ...   192   2e-44  2
(BJ395009) Dictyostelium discoideum cDNA clone:dds37g10, 5' ...   192   2e-44  1
(BJ389589) Dictyostelium discoideum cDNA clone:dds19g08, 5' ...   192   2e-44  1
(BJ389479) Dictyostelium discoideum cDNA clone:dds18l23, 5' ...   192   2e-44  1
(BJ387024) Dictyostelium discoideum cDNA clone:dds11o23, 5' ...   192   2e-44  1
(BJ368777) Dictyostelium discoideum cDNA clone:ddc48f02, 5' ...   192   2e-44  1
(BJ368074) Dictyostelium discoideum cDNA clone:ddc45n02, 5' ...   192   2e-44  1
(BJ365013) Dictyostelium discoideum cDNA clone:ddc33g22, 5' ...   192   2e-44  1
(BJ358398) Dictyostelium discoideum cDNA clone:ddc1j09, 5' e...   192   2e-44  1
(BJ339276) Dictyostelium discoideum cDNA clone:dda64c21, 5' ...   192   2e-44  1
(BJ336671) Dictyostelium discoideum cDNA clone:dda54p18, 5' ...   192   2e-44  1
(BJ332720) Dictyostelium discoideum cDNA clone:dda40h18, 5' ...   192   2e-44  1
(BJ331567) Dictyostelium discoideum cDNA clone:dda35m22, 5' ...   192   2e-44  1
(BJ330162) Dictyostelium discoideum cDNA clone:dda27h13, 5' ...   192   2e-44  1
(X67782) D.discoideum 5S ribosomal RNA gene.                      190   8e-44  1
(V00191) 5S ribosomal RNA of slime mold (D. discoideum).          190   8e-44  1
(M25202) D.discoideum 5S rRNA.                                    190   8e-44  1
(DQ340385) Dictyostelium citrinum 17S ribosomal RNA, 5.8S ri...   190   8e-44  1
(AY171066) Dictyostelium discoideum extrachromosomal palindr...   190   8e-44  1
(BJ394688) Dictyostelium discoideum cDNA clone:dds36k05, 5' ...   190   8e-44  1
(BJ393528) Dictyostelium discoideum cDNA clone:dds31k18, 5' ...   190   8e-44  1
(BJ366111) Dictyostelium discoideum cDNA clone:ddc37d21, 5' ...   190   8e-44  1
(BJ365666) Dictyostelium discoideum cDNA clone:ddc36m02, 5' ...   190   8e-44  1
(BJ361254) Dictyostelium discoideum cDNA clone:ddc16o07, 5' ...   190   8e-44  1
(BJ359722) Dictyostelium discoideum cDNA clone:ddc2l01, 5' e...   190   8e-44  1
(BJ330279) Dictyostelium discoideum cDNA clone:dda31a04, 5' ...   190   8e-44  1
(BJ327784) Dictyostelium discoideum cDNA clone:dda21c19, 5' ...   190   8e-44  1
(BJ414872) Dictyostelium discoideum cDNA clone:ddv20o14, 5' ...   188   3e-43  1
(BJ394057) Dictyostelium discoideum cDNA clone:dds33k15, 5' ...   188   3e-43  1
(BJ334858) Dictyostelium discoideum cDNA clone:dda48f02, 5' ...   188   3e-43  1
(BJ334709) Dictyostelium discoideum cDNA clone:dda47d13, 5' ...   188   3e-43  1
(BJ368514) Dictyostelium discoideum cDNA clone:ddc47d02, 5' ...   184   5e-42  1
(AY293825) Dictyostelium discoideum transposon cluster; tRNA...   182   2e-41  1
(BJ338746) Dictyostelium discoideum cDNA clone:dda62i22, 5' ...   180   8e-41  1
(BJ423385) Dictyostelium discoideum cDNA clone:ddv49c06, 5' ...   178   3e-40  1
(BJ328350) Dictyostelium discoideum cDNA clone:dda23i24, 5' ...   178   3e-40  1
(BJ358632) Dictyostelium discoideum cDNA clone:ddc10g14, 5' ...   172   2e-38  1
(BJ335137) Dictyostelium discoideum cDNA clone:dda49g02, 5' ...   143   2e-29  1
(BJ442161) Dictyostelium discoideum cDNA clone:ddv49c06, 3' ...   119   3e-27  2
(BJ361707) Dictyostelium discoideum cDNA clone:ddc18l07, 5' ...   131   7e-26  1
(BJ388012) Dictyostelium discoideum cDNA clone:dds7l09, 5' e...   107   1e-18  1
(BJ421924) Dictyostelium discoideum cDNA clone:ddv44d08, 5' ...    96   4e-15  1
(BJ397824) Dictyostelium discoideum cDNA clone:dds47c24, 5' ...    82   6e-11  1
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    54   8e-07  2
(BJ389480) Dictyostelium discoideum cDNA clone:dds18l24, 5' ...    64   1e-05  1
(BJ350714) Dictyostelium discoideum cDNA clone:dda40d24, 3' ...    60   2e-04  1
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    38   5e-04  14
(EJ218757) 1092351168430 Global-Ocean-Sampling_GS-27-01-01-1...    58   8e-04  1
(EK237649) 1095460208836 Global-Ocean-Sampling_GS-31-01-01-1...    52   0.017  2
(ER486057) 1093015299164 Global-Ocean-Sampling_GS-35-01-01-1...    52   0.050  1
(ER418039) 1092963682026 Global-Ocean-Sampling_GS-35-01-01-1...    52   0.050  1
(EK577982) 1095521376409 Global-Ocean-Sampling_GS-32-01-01-1...    52   0.050  1
(EK561567) 1095521008768 Global-Ocean-Sampling_GS-32-01-01-1...    52   0.050  1
(EK533903) 1095516018950 Global-Ocean-Sampling_GS-32-01-01-1...    52   0.050  1
(EK416521) 1095515467718 Global-Ocean-Sampling_GS-31-01-01-1...    52   0.050  1
(EK303959) 1095462374193 Global-Ocean-Sampling_GS-31-01-01-1...    52   0.050  1
(EK155696) 1095458004169 Global-Ocean-Sampling_GS-31-01-01-1...    52   0.050  1
(EJ351190) 1092963589627 Global-Ocean-Sampling_GS-28-01-01-1...    52   0.050  1
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214...    36   0.060  8
(DD391889) Method and nucleic acids for the improved treatme...    36   0.084  4
(DD209248) test.                                                   36   0.084  4
(CQ807145) Sequence 595 from Patent WO2004035803.                  36   0.084  4
(AX826085) Sequence 337 from Patent WO03072821.                    36   0.084  4
(AX822445) Sequence 337 from Patent EP1340818.                     36   0.084  4
(AX795923) Sequence 266 from Patent WO03052135.                    36   0.084  4
(AX767543) Sequence 191 from Patent WO03044226.                    36   0.084  4
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    34   0.11   12
(DQ340386) Dictyostelium purpureum 17S ribosomal RNA, 5.8S r...    40   0.13   2
(BJ347240) Dictyostelium discoideum cDNA clone:dda26c17, 3' ...    50   0.20   1
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    38   0.21   14
(AC098811) Papio anubis clone RP41-367L14, complete sequence.      40   0.29   6
(AL024458) Human DNA sequence from clone RP3-344I7 on chromo...    46   0.35   3
(BX322568) Zebrafish DNA sequence from clone DKEY-38N4 in li...    42   0.37   5
(AC146079) Pan troglodytes BAC clone RP43-46C10 from chromos...    38   0.37   8
(AE014823) Plasmodium falciparum 3D7 chromosome 14 section 8...    32   0.44   10
(AL034396) Human DNA sequence from clone RP5-1158B12 on chro...    46   0.50   3
(AX458482) Sequence 28 from Patent WO0246454.                      36   0.50   4
(AL034547) Human DNA sequence from clone RP5-1098F8 on chrom...    36   0.65   7
(AL844509) Plasmodium falciparum chromosome 13.                    40   0.75   12
(AC104185) Homo sapiens chromosome 3 clone RP11-268J19, comp...    48   0.78   1

>(BJ377602) Dictyostelium discoideum cDNA clone:ddc25a04, 3' end,
            single read.
          Length = 689

 Score = 1302 bits (657), Expect = 0.0
 Identities = 657/657 (100%)
 Strand = Plus / Minus


Query: 415  gcatttgtaacaaccaattttcatttggtgttcaattggtattggttttgtattttattt 474
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689  gcatttgtaacaaccaattttcatttggtgttcaattggtattggttttgtattttattt 630


Query: 475  tattgcagcagaattaataattggtaaaatttgtccattttgtacattagttcatattat 534
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629  tattgcagcagaattaataattggtaaaatttgtccattttgtacattagttcatattat 570


Query: 535  taatgtagcattaatgtatttagtatttcaagtttattgtcaacttaaatcaccaccacc 594
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569  taatgtagcattaatgtatttagtatttcaagtttattgtcaacttaaatcaccaccacc 510


Query: 595  attatttttagtagcaaattcattgaaatcattcattgtgacagtattattagtgcattt 654
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509  attatttttagtagcaaattcattgaaatcattcattgtgacagtattattagtgcattt 450


Query: 655  aatgttaatattatttgttaatggtggtaatacaaatggtggtgttggtggtggtatcat 714
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449  aatgttaatattatttgttaatggtggtaatacaaatggtggtgttggtggtggtatcat 390


Query: 715  aattaatggtattaataaaaagataacaaatgaatcattttcacaatgtttaacaagaat 774
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389  aattaatggtattaataaaaagataacaaatgaatcattttcacaatgtttaacaagaat 330


Query: 775  gaatatggtaatgtttggttcatcttcatgtggtgcatgtatgaatcaaaagaaattatt 834
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329  gaatatggtaatgtttggttcatcttcatgtggtgcatgtatgaatcaaaagaaattatt 270


Query: 835  catgttaccaggtaaagatgaaactgaatcaccatggcattatattaagtttatcgaatg 894
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269  catgttaccaggtaaagatgaaactgaatcaccatggcattatattaagtttatcgaatg 210


Query: 895  tcaagatagtgatagaaactttaaagaggaatgtgaaaaatggggtatcaaacgttaccc 954
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209  tcaagatagtgatagaaactttaaagaggaatgtgaaaaatggggtatcaaacgttaccc 150


Query: 955  aacttggcataaatttgaaaatgattataaatcctcagaaaataaaattttagaaactca 1014
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149  aacttggcataaatttgaaaatgattataaatcctcagaaaataaaattttagaaactca 90


Query: 1015 ttcaggtgttatgggcattgctgaactttcaaaaatgtcgggttgtcaatatcctct 1071
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89   ttcaggtgttatgggcattgctgaactttcaaaaatgtcgggttgtcaatatcctct 33

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,412,215,234
Number of extensions: 94307215
Number of successful extensions: 8458981
Number of sequences better than 10.0: 197
Length of query: 1211
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1187
Effective length of database: 97,308,875,965
Effective search space: 115505635770455
Effective search space used: 115505635770455
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.10
Homology vs Protein 
Query= Contig-U13949-1 (Contig-U13949-1Q) /CSM_Contig/Contig-U13949-1Q.Seq.d
         (1211 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000815_263(CP000815|pid:none) Paulinella chromatophora chromat...    45   0.004
BA000039_142(BA000039|pid:none) Thermosynechococcus elongatus BP...    44   0.009
CP000751_60(CP000751|pid:none) Kineococcus radiotolerans SRS3021...    35   0.012
CP001399_484(CP001399|pid:none) Sulfolobus islandicus L.S.2.15, ...    38   0.017
CP001401_476(CP001401|pid:none) Sulfolobus islandicus M.16.27, c...    38   0.017
CP000435_2497(CP000435|pid:none) Synechococcus sp. CC9311, compl...    43   0.026
AY223810_107(AY223810|pid:none) Rhodococcus erythropolis linear ...    42   0.034
AE009441_897(AE009441|pid:none) Pyrobaculum aerophilum str. IM2,...    31   0.039
CP001403_479(CP001403|pid:none) Sulfolobus islandicus Y.G.57.14,...    36   0.080
BA000045_2112(BA000045|pid:none) Gloeobacter violaceus PCC 7421 ...    40   0.13
CP001339_1567(CP001339|pid:none) Thioalkalivibrio sp. HL-EbGR7, ...    40   0.17
AE006641_1469(AE006641|pid:none) Sulfolobus solfataricus P2, com...    36   0.17
CP001404_2280(CP001404|pid:none) Sulfolobus islandicus Y.N.15.51...    35   0.17
CP000553_173(CP000553|pid:none) Prochlorococcus marinus str. NAT...    40   0.22
CP001472_2858(CP001472|pid:none) Acidobacterium capsulatum ATCC ...    39   0.28
AE006641_1710(AE006641|pid:none) Sulfolobus solfataricus P2, com...    39   0.28
BX569694_119(BX569694|pid:none) Synechococcus sp. WH8102 complet...    39   0.37
CP000552_114(CP000552|pid:none) Prochlorococcus marinus str. MIT...    39   0.49
CP000509_404(CP000509|pid:none) Nocardioides sp. JS614, complete...    30   0.57
CP000117_637(CP000117|pid:none) Anabaena variabilis ATCC 29413, ...    38   0.63
AE017126_120(AE017126|pid:none) Prochlorococcus marinus subsp. m...    38   0.63
CP000777_830(CP000777|pid:none) Leptospira biflexa serovar Patoc...    33   0.90
CP001291_460(CP001291|pid:none) Cyanothece sp. PCC 7424, complet...    37   1.8
CP000239_2486(CP000239|pid:none) Synechococcus sp. JA-3-3Ab, com...    37   1.8
CP000554_216(CP000554|pid:none) Prochlorococcus marinus str. MIT...    36   2.4
AP008931_125(AP008931|pid:none) Rhodococcus erythropolis PR4 pla...    35   5.4
BX548175_194(BX548175|pid:none) Prochlorococcus marinus MIT9313 ...    35   5.4
CT971583_2205(CT971583|pid:none) Synechococcus WH7803 complete g...    35   5.4
DQ900932_1(DQ900932|pid:none) Ciona intestinalis vitamin K epoxi...    34   9.2
CU928174_503(CU928174|pid:none) Zygosaccharomyces rouxii strain ...    34   9.2
AJ845083_48(AJ845083|pid:none) Streptomyces tenjimariensis istam...    31   9.3

>CP000815_263(CP000815|pid:none) Paulinella chromatophora
            chromatophore, complete genome.
          Length = 287

 Score = 45.4 bits (106), Expect = 0.004
 Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
 Frame = +2

Query: 749  SFSQCLTRMNMVMFGSSSCGACMNQKKLFMLPGKDETESPWHYIKFIECQDSDRNFKEE- 925
            S ++ LT     M+    C  C  QK+LF   GK+ + +    +  IEC    +N K++
Sbjct: 191  SLARFLTNSGTKMYSMYWCPHCHEQKELF---GKEASSN----LNIIECASDGKNSKKDI 243

Query: 926  CEKWGIKRYPTWHKFENDYKSSENKILETHSGVMGIAELSKMSG 1057
            C++  + R+P+W + +ND  S       T SGV  + EL+ +SG
Sbjct: 244  CKENKVNRFPSW-EIKNDADSL------TDSGVKSLNELADLSG 280

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,677,733,563
Number of extensions: 31906765
Number of successful extensions: 64785
Number of sequences better than 10.0: 31
Number of HSP's gapped: 64764
Number of HSP's successfully gapped: 41
Length of query: 403
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 272
Effective length of database: 627,191,635
Effective search space: 170596124720
Effective search space used: 170596124720
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.96  gvh: 0.52  alm: 0.17  top: 0.50  tms: 0.20  mit: 0.22  mip: 0.19
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 28.0 %: plasma membrane
	 20.0 %: mitochondrial
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U13949-1 is end
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 2
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0