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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U13948-1
Contig ID Contig-U13948-1
Contig update 2002.12.18
Contig sequence 
>Contig-U13948-1 (Contig-U13948-1Q) /CSM_Contig/Contig-U13948-1Q.Seq.d
TATATTATTATTATTATTTTTTTATTTATTAACTGATCATCAAAATGTTG
AGCCATATAAACATTATTTATATTATTTGGATTTTGTTATTTTTTTTTAC
ATGTTTAATTAGCTTTTTTTTAGTAAATAGACATTTAGTTAATTACTCCT
CTCCAAATGTTCAAAAAAATGTTGTAAGAATTGTAATGTTTCTCCCATTA
AATTCCGGTCTCAGTATTTTATCATCTATCTTCCCAGGAATAGCTATTTT
CAATAGCCTTGTTAGAAATTGGTATGATAAAAATGAAAATTTTAATTTTT
TGGTAAATTAAAATTGAAATTAATTTTTTTTTTATTTTTCAAGCTACATG
GCTTTTACAGCTCATTGCTTTTTCTCAATGATGACAAATTCAATTGGAGA
AAAAAATATGCTAGATTTGTTTGAATCCCAAGGAAAAATGAAATTTTTGN
GTTGCAAAGTAATGAAGCTAAATAGAAAATTATTTAATACTTTAAGATTT
GGATCAATCCAATTTTTTATTGTAAAAATTTTTTGCTCCATTGCAACAAT
TACCTGCATTTCAATCAGTGAAGAAGTTCATTCTATTTTAAATGTTCAAT
CCTTTGCTCCATATGAATTTTTAATTTCTTTGGTTGCCTCAATTTTCTGT
ACTATCTCATTATCAATATTCCTTGCCATTAGTAAAGAAAAATTAAGTCA
GTATTGGCCAATGACCAAGTATAGAATTATGATATTCATTTTCTTTATTG
AACAATTTGAATATCTTTTCTTTGCACTTATTTTCTTGAGAGGTCCTTTT
TTTTTAGGTTTTAAAAACTCCTTTGATCAAACTATTTTTATACTTCACTT
TACAGTTGTTGTTACAATGTTTTTGTTCTCAATTGTTTATCTTTTCATTT
ACTCTTATAAAAACTATAGAAATAAAGCTTCAAATGAACCTTTAGTTGGA
AGAAATTTTAAAGACTCCTTTGGTTTATTAAATTATTTGGATGTATTAAA
TCCAAAAGATTTGTTTATTGACTTTGCTAGCATTTTCAAAACAAATAATA
ACAAATTTAAAGAGTTGGTTGAAGAAAATGGTGATAAAAAACCAAAGAAA
AATATTGAAGATCAAAACCAAGAAAATAGTAATGACCAACCACTATCAAT
CCAAATGGCTTAGTTGGATTTCAAAGGAATCAAAAATTTTGAATCTTCAA
ATTGAAACCAAATATTTTTATTGGCTTATATAAAAAAGGAAATAAATAAA
TAA
Gap no gap
Contig length 1253
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 1816159
End point 1817427
Strand (PLUS/MINUS) PLUS
Number of clones 7
Number of EST 11
Link to clone list U13948
List of clone(s) 

est1=AFI303F,1,539
est2=SFJ671F,12,568
est3=AFK317F,22,290
est4=AHI771F,24,223
est5=AHI771Z,499,1237
est6=AFK310Z,500,1237
est7=AFI303Z,589,1255
est8=SFJ671Z,638,1236
est9=AFN751Z,650,1268
est10=AFK317Z,780,1122
est11=SFA150Z,990,1255
Translated Amino Acid sequence 
yyyyyffiy*liikmlshiniiyiiwillffftclisfflvnrhlvnysspnvqknvvri
vmflplnsglsilssifpgiaifnslvrnwydknenfnflvn*n*n*FFFYFSSYMAFTA
HCFFSMMTNSIGEKNMLDLFESQGKMKFLXCKVMKLNRKLFNTLRFGSIQFFIVKIFCSI
ATITCISISEEVHSILNVQSFAPYEFLISLVASIFCTISLSIFLAISKEKLSQYWPMTKY
RIMIFIFFIEQFEYLFFALIFLRGPFFLGFKNSFDQTIFILHFTVVVTMFLFSIVYLFIY
SYKNYRNKASNEPLVGRNFKDSFGLLNYLDVLNPKDLFIDFASIFKTNNNKFKELVEENG
DKKPKKNIEDQNQENSNDQPLSIQMA*ldfkgiknfessn*nqifllayikkeink*
Translated Amino Acid sequence (All Frames) 
Frame A:
yiiiiiflfin*sskc*ai*tlfilfgfcyfflhv*laff**idi*litplqmfkkml*e
l*cfsh*ipvsvfyhlssqe*lfsialleigmikmkilifw*ikieinfffifqatwllq
liafsq**qiqlekkic*iclnpkek*nfxvak**s*ienylil*dldqsnfll*kffap
lqqlpafqsvkkfilf*mfnpllhmnf*flwlpqfsvlshyqyslplvkkn*vsigq*ps
iel*ysfsllnnlnifslhlfs*evlff*vlktpliklflyftlqlllqcfcsqlfifsf
tliktieiklqmnl*leeilktplvy*iiwmy*iqkiclltllafskqiitnlkswlkkm
viknqrkilkiktkkivmtnhyqskwlswiskeskilnlqietkyfywli*krk*in


Frame B:
illllffylltdhqnvepykhylyyldfviffymfn*lffsk*tfs*lllskcskkcckn
cnvspikfrsqyfiiylprnsyfq*pc*klv**k*kf*ffgklklklifflffklhgfys
sllflnddkfnwrkkyarfv*iprkneifxlqsneak*kii*yfkiwinpifycknfllh
cnnylhfnq*rssfyfkcsilcsi*ifnffgclnflyyliinipch**rkiksvlandqv
*nydihfly*ti*isflctyflersfffrf*kll*snyfytslysccynvfvlnclsfhl
ll*kl*k*sfk*tfswkkf*rllwfiklfgcikskrfvy*lc*hfqnk**qi*rvg*rkw
**ktkeky*rskprk***pttinpnglvgfqrnqkf*ifklkpnifiglykkgnk*i


Frame C:
yyyyyffiy*liikmlshiniiyiiwillffftclisfflvnrhlvnysspnvqknvvri
vmflplnsglsilssifpgiaifnslvrnwydknenfnflvn*n*n*FFFYFSSYMAFTA
HCFFSMMTNSIGEKNMLDLFESQGKMKFLXCKVMKLNRKLFNTLRFGSIQFFIVKIFCSI
ATITCISISEEVHSILNVQSFAPYEFLISLVASIFCTISLSIFLAISKEKLSQYWPMTKY
RIMIFIFFIEQFEYLFFALIFLRGPFFLGFKNSFDQTIFILHFTVVVTMFLFSIVYLFIY
SYKNYRNKASNEPLVGRNFKDSFGLLNYLDVLNPKDLFIDFASIFKTNNNKFKELVEENG
DKKPKKNIEDQNQENSNDQPLSIQMA*ldfkgiknfessn*nqifllayikkeink*
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U13948-1 (Contig-U13948-1Q)
/CSM_Contig/Contig-U13948-1Q.Seq.d
         (1253 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13948-1 (Contig-U13948-1Q) /CSM_Contig/Conti...  1711  0.0
Contig-U03663-1 (Contig-U03663-1Q) /CSM_Contig/Conti...  1628  0.0
Contig-U13094-1 (Contig-U13094-1Q) /CSM_Contig/Conti...    50  6e-06
Contig-U14719-1 (Contig-U14719-1Q) /CSM_Contig/Conti...    36  0.089
Contig-U14482-1 (Contig-U14482-1Q) /CSM_Contig/Conti...    36  0.089
Contig-U14465-1 (Contig-U14465-1Q) /CSM_Contig/Conti...    36  0.089
Contig-U13567-1 (Contig-U13567-1Q) /CSM_Contig/Conti...    36  0.089
Contig-U11478-1 (Contig-U11478-1Q) /CSM_Contig/Conti...    36  0.089
Contig-U14878-1 (Contig-U14878-1Q) /CSM_Contig/Conti...    32  1.4

>Contig-U13948-1 (Contig-U13948-1Q) /CSM_Contig/Contig-U13948-1Q.Seq.d
          Length = 1253

 Score = 1711 bits (863), Expect = 0.0
 Identities = 898/914 (98%)
 Strand = Plus / Plus

                                                                        
Query: 340  caagctacatggcttttacagctcattgctttttctcaatgatgacaaattcaattggag 399
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340  caagctacatggcttttacagctcattgctttttctcaatgatgacaaattcaattggag 399

                                                                        
Query: 400  nnnnnnntatgctagatttgtttgaatcccaaggaaaaatgaaatttttgngttgcaaag 459
                   |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400  aaaaaaatatgctagatttgtttgaatcccaaggaaaaatgaaatttttgngttgcaaag 459

                                                                        
Query: 460  taatgaagctaaatagaaaattatttaatactttaagatttggatcaatccaatttttta 519
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460  taatgaagctaaatagaaaattatttaatactttaagatttggatcaatccaatttttta 519

                                                                        
Query: 520  ttgtaaaaattttttgctccattgcaacaattacctgcatttcaatcagtgaagaagttc 579
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520  ttgtaaaaattttttgctccattgcaacaattacctgcatttcaatcagtgaagaagttc 579

                                                                        
Query: 580  attctattttaaatgttcaatcctttgctccatatgaatttttaatttctttggttgcct 639
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580  attctattttaaatgttcaatcctttgctccatatgaatttttaatttctttggttgcct 639

                                                                        
Query: 640  caattttctgtactatctcattatcaatattccttgccattagtaaagaaaaattaagtc 699
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640  caattttctgtactatctcattatcaatattccttgccattagtaaagaaaaattaagtc 699

                                                                        
Query: 700  agtattggccaatgaccaagtatagaattatgatattcattttctttattgaacaatttg 759
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700  agtattggccaatgaccaagtatagaattatgatattcattttctttattgaacaatttg 759

                                                                        
Query: 760  aatatcttttctttgcacttattttcttgagaggtccnnnnnnnnnaggttttaaaaact 819
            |||||||||||||||||||||||||||||||||||||         ||||||||||||||
Sbjct: 760  aatatcttttctttgcacttattttcttgagaggtcctttttttttaggttttaaaaact 819

                                                                        
Query: 820  cctttgatcaaactatttttatacttcactttacagttgttgttacaatgtttttgttct 879
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820  cctttgatcaaactatttttatacttcactttacagttgttgttacaatgtttttgttct 879

                                                                        
Query: 880  caattgtttatcttttcatttactcttataaaaactatagaaataaagcttcaaatgaac 939
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880  caattgtttatcttttcatttactcttataaaaactatagaaataaagcttcaaatgaac 939

                                                                        
Query: 940  ctttagttggaagaaattttaaagactcctttggtttattaaattatttggatgtattaa 999
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940  ctttagttggaagaaattttaaagactcctttggtttattaaattatttggatgtattaa 999

                                                                        
Query: 1000 atccaaaagatttgtttattgactttgctagcattttcaaaacaaataataacaaattta 1059
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1000 atccaaaagatttgtttattgactttgctagcattttcaaaacaaataataacaaattta 1059

                                                                        
Query: 1060 aagagttggttgaagaaaatggtgataaaaaaccaaagaaaaatattgaagatcaaaacc 1119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1060 aagagttggttgaagaaaatggtgataaaaaaccaaagaaaaatattgaagatcaaaacc 1119

                                                                        
Query: 1120 aagaaaatagtaatgaccaaccactatcaatccaaatggcttagttggatttcaaaggaa 1179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1120 aagaaaatagtaatgaccaaccactatcaatccaaatggcttagttggatttcaaaggaa 1179

                                                                        
Query: 1180 tcaaaaattttgaatcttcaaattgaaaccaaatatttttattggcttatataaaaaagg 1239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1180 tcaaaaattttgaatcttcaaattgaaaccaaatatttttattggcttatataaaaaagg 1239

                          
Query: 1240 aaataaataaataa 1253
            ||||||||||||||
Sbjct: 1240 aaataaataaataa 1253


 Score =  242 bits (122), Expect = 8e-64
 Identities = 136/143 (95%)
 Strand = Plus / Plus

                                                                       
Query: 122 agtaaatagacatttagttaattactcctctccaaatgttcnnnnnnntgttgtaagaat 181
           |||||||||||||||||||||||||||||||||||||||||       ||||||||||||
Sbjct: 122 agtaaatagacatttagttaattactcctctccaaatgttcaaaaaaatgttgtaagaat 181

                                                                       
Query: 182 tgtaatgtttctcccattaaattccggtctcagtattttatcatctatcttcccaggaat 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 tgtaatgtttctcccattaaattccggtctcagtattttatcatctatcttcccaggaat 241

                                  
Query: 242 agctattttcaatagccttgtta 264
           |||||||||||||||||||||||
Sbjct: 242 agctattttcaatagccttgtta 264


 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 32 actgatcatcaaaatgttgagccatataaac 62
          |||||||||||||||||||||||||||||||
Sbjct: 32 actgatcatcaaaatgttgagccatataaac 62


>Contig-U03663-1 (Contig-U03663-1Q) /CSM_Contig/Contig-U03663-1Q.Seq.d
          Length = 1159

 Score = 1628 bits (821), Expect = 0.0
 Identities = 878/901 (97%), Gaps = 3/901 (0%)
 Strand = Plus / Plus

                                                                        
Query: 343  gctacatggcttttacagctcattgctttttctcaatgatgacaaattcaattggagnnn 402
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 262  gctacatggcttttacagctcattgctttttctcaatgatgacaaattcaattggagaaa 321

                                                                        
Query: 403  nnnntatgctagatttgtttgaatcccaaggaaaaatgaaatttttgngttgcaaagtaa 462
                ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 322  aaaatatgctagatttgtttgaatcccaaggaaaaatgaaatttttgtgttgcaaagtaa 381

                                                                        
Query: 463  tgaagctaaatagaaaattatttaatactttaagatttggatcaatccaattttttattg 522
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382  tgaagctaaatagaaaattatttaatactttaagatttggatcaatccaattttttattg 441

                                                                        
Query: 523  taaaaattttttgctccattgcaacaattacctgcatttcaatcagtgaagaagttcatt 582
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442  taaaaattttttgctccattgcaacaattacctgcatttcaatcagtgaagaagttcatt 501

                                                                        
Query: 583  ctattttaaatgttcaatcctttgctccatatgaatttttaatttctttggttgcctcaa 642
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 502  ctattttaaatgttcaatcctttgctccatatgaatttttaatttctttggntgcctcaa 561

                                                                        
Query: 643  ttttctgtactatctcattatcaatattccttgccattagtaaagaaaaattaagtcagt 702
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562  ttttctgtactatctcattatcaatattccttgccattagtaaagaaaaattaagtcagt 621

                                                                        
Query: 703  attggccaatgaccaagtatagaattatgatattcattttctttattgaacaatttgaat 762
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622  attggccaatgaccaagtatagaattatgatattcattttctttattgaacaatttgaat 681

                                                                        
Query: 763  atcttttctttgcacttattttcttgagaggtccnnnnnnnnnaggttttaaaaactcct 822
            ||||||||||||||||||||||||||||||||||         |||||||||||||||||
Sbjct: 682  atcttttctttgcacttattttcttgagaggtcctttttttttaggttttaaaaactcct 741

                                                                        
Query: 823  ttgatcaaactatttttatacttcactttacagttgttgttacaatgtttttgttctcaa 882
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742  ttgatcaaactatttttatacttcactttacagttgttgttacaatgtttttgttctcaa 801

                                                                        
Query: 883  ttgtttatcttttcatttactcttataaaaactatagaaataaagcttcaaatgaacctt 942
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802  ttgtttatcttttcatttactcttataaaaactatagaaataaagcttcaaatgaacctt 861

                                                                        
Query: 943  tagttggaagaaattttaaagactcctttggtttattaaattatttggatgtattaaatc 1002
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862  tagttggaagaaattttaaagactcctttggtttattaaattatttggatgtattaaatc 921

                                                                        
Query: 1003 caaaagatttgtttattgactttgctagcattttcaaaacaaataataacaaatttaaag 1062
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922  caaaagatttgtttattgactttgctagcattttcaaaacaaataataacaaatttaaag 981

                                                                        
Query: 1063 agttggttgaagaaaatggtgataaaaaaccaaagaaaaatattgaagatcaaaaccaag 1122
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 982  agttggttgaagaaaatggtgataaaaaaccaaagaaaaatattgaagatcaaaaccaag 1041

                                                                        
Query: 1123 aaaatagtaatgaccaaccactatcaatccaaatggcttagttggatttcaaaggaatca 1182
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1042 aaaatagtaatgaccaaccactatcaatccaaatggcttagttggatttcaaaggaatca 1101

                                                                        
Query: 1183 aaaattttgaatcttcaaattgaaaccaaatatttttattggcttatataaaaaaggaaa 1242
            ||||||||||||||||||| | |||||||||||||||||  | |||||||||||||||||
Sbjct: 1102 aaaattttgaatcttcaaa-tnaaaccaaatatttttat--ggttatataaaaaaggaaa 1158

             
Query: 1243 t 1243
            |
Sbjct: 1159 t 1159


 Score =  242 bits (122), Expect = 8e-64
 Identities = 136/143 (95%)
 Strand = Plus / Plus

                                                                       
Query: 122 agtaaatagacatttagttaattactcctctccaaatgttcnnnnnnntgttgtaagaat 181
           |||||||||||||||||||||||||||||||||||||||||       ||||||||||||
Sbjct: 113 agtaaatagacatttagttaattactcctctccaaatgttcaaaaaaatgttgtaagaat 172

                                                                       
Query: 182 tgtaatgtttctcccattaaattccggtctcagtattttatcatctatcttcccaggaat 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 tgtaatgtttctcccattaaattccggtctcagtattttatcatctatcttcccaggaat 232

                                  
Query: 242 agctattttcaatagccttgtta 264
           |||||||||||||||||||||||
Sbjct: 233 agctattttcaatagccttgtta 255


 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 32 actgatcatcaaaatgttgagccatataaac 62
          |||||||||||||||||||||||||||||||
Sbjct: 23 actgatcatcaaaatgttgagccatataaac 53


>Contig-U13094-1 (Contig-U13094-1Q) /CSM_Contig/Contig-U13094-1Q.Seq.d
          Length = 1632

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 41/45 (91%), Gaps = 1/45 (2%)
 Strand = Plus / Plus

                                                        
Query: 469 taaatagaaaattatttaatactttaaga-tttggatcaatccaa 512
           |||||| | |||||||||| ||||||||| |||||||||||||||
Sbjct: 480 taaataaacaattatttaaaactttaagaatttggatcaatccaa 524


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 24,995
Number of Sequences: 6905
Number of extensions: 24995
Number of successful extensions: 4215
Number of sequences better than 10.0: 334
length of query: 1253
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1237
effective length of database: 5,564,391
effective search space: 6883151667
effective search space used: 6883151667
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.16
Homology vs DNA 
Query= Contig-U13948-1 (Contig-U13948-1Q) /CSM_Contig/Contig-U13948-1Q.Seq.d
         (1253 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ353013) Dictyostelium discoideum cDNA clone:dda48n17, 3' ...   591   0.0    5
(BJ344933) Dictyostelium discoideum cDNA clone:dda21d03, 3' ...   589   0.0    5
(BJ401725) Dictyostelium discoideum cDNA clone:dds19o04, 3' ...   507   0.0    5
(BJ343750) Dictyostelium discoideum cDNA clone:dda17f01, 3' ...   460   0.0    4
(BJ329183) Dictyostelium discoideum cDNA clone:dda24h05, 5' ...   587   0.0    5
(BJ345706) Dictyostelium discoideum cDNA clone:dda28f13, 3' ...   446   0.0    3
(BJ389557) Dictyostelium discoideum cDNA clone:dds19o04, 5' ...   547   0.0    5
(BJ402160) Dictyostelium discoideum cDNA clone:dds20m18, 3' ...   460   0.0    4
(BJ389957) Dictyostelium discoideum cDNA clone:dds20m18, 5' ...   315   0.0    5
(BJ326579) Dictyostelium discoideum cDNA clone:dda17f01, 5' ...   252   e-168  5
(BJ344924) Dictyostelium discoideum cDNA clone:dda21b05, 3' ...   365   e-100  2
(BJ327590) Dictyostelium discoideum cDNA clone:dda21b05, 5' ...   165   1e-61  5
(BJ398671) Dictyostelium discoideum cDNA clone:dds1c13, 3' e...   192   1e-60  3
(BJ335033) Dictyostelium discoideum cDNA clone:dda48n17, 5' ...   107   2e-47  3
(AC130136) Rattus norvegicus clone CH230-82A1, *** SEQUENCIN...    54   0.013  1
(AC128277) Rattus norvegicus clone CH230-337D15, *** SEQUENC...    54   0.013  1
(AC097306) Rattus norvegicus clone CH230-36A16, *** SEQUENCI...    54   0.013  1
(AC188071) Macaca mulatta chromosome UNK clone CH250-12H12, ...    52   0.052  1
(AB071115) Macaca fascicularis testis cDNA clone:QtsA-18831,...    52   0.052  1
(FE527874) Chr.00027 cDNA library of Chrysoperla nipponensis...    52   0.052  1
(AC211061) Solanum lycopersicum chromosome 6 clone C06HBa019...    38   0.23   6
(AE014831) Plasmodium falciparum 3D7 chromosome 10 section 3...    34   0.24   11
(AC005308) Plasmodium falciparum chromosome 12 clone 3D7, **...    36   0.47   9
(AM457555) Vitis vinifera contig VV78X028112.5, whole genome...    40   0.48   4
(AL844509) Plasmodium falciparum chromosome 13.                    46   0.51   11
(CP000013) Borrelia garinii PBi, complete genome.                  34   0.62   18
(AC187948) Atelerix albiventris clone LB4-89D3, WORKING DRAF...    40   0.68   5
(CU024886) Mouse DNA sequence from clone RP23-352I19 on chro...    48   0.81   1
(AC154444) Mus musculus BAC clone RP24-179H6 from chromosome...    48   0.81   1
(AY794609) Anthostema senegalense tRNA-Leu (trnL) gene and t...    48   0.81   1
(ED427977) AUAC-aak95f02.g1 Ascaris suum whole genome shotgu...    40   0.86   2
(ED280205) AUAC-aax35c01.g1 Ascaris suum whole genome shotgu...    40   0.89   2
(AM481521) Vitis vinifera contig VV78X011583.6, whole genome...    42   0.89   3
(AM471566) Vitis vinifera contig VV78X110241.3, whole genome...    36   1.0    4
(AG131227) Pan troglodytes DNA, clone: PTB-143D18.F.               32   1.2    3
(AC134488) Rattus norvegicus clone CH230-310F21, *** SEQUENC...    42   1.3    5
(AC006899) Caenorhabditis elegans clone Y73B6y, *** SEQUENCI...    46   1.3    8
(CR293526) Mouse DNA sequence from clone RP23-9K14 on chromo...    42   1.4    3
(AC098722) Mus musculus BAC clone RP23-3B20 from 14, complet...    38   1.4    5
(AC084184) Homo sapiens clone RP11-744B19, *** SEQUENCING IN...    38   1.5    7
(AE014845) Plasmodium falciparum 3D7 chromosome 12, section ...    36   1.8    11
(AF491812) Homo sapiens DNA polymerase beta (POLB) gene, com...    42   1.8    5
(CZ567779) 1_p_bW022D07R_D14_03 WAG Gallus gallus genomic cl...    40   1.8    2
(CX670565) UCRCP01_051_F05_T3 Swingle citrumelo nematode-cha...    42   1.9    2
(CJ224655) Mus musculus blastocyst cDNA, RIKEN full-length e...    38   1.9    2
(AL731730) Mouse DNA sequence *** SEQUENCING CANCELLED *** f...    42   2.1    2
(AC116955) Dictyostelium discoideum chromosome 2 map 5455881...    36   2.4    4
(AM488152) Vitis vinifera contig VV78X004115.3, whole genome...    32   2.4    5
(AC110981) Rattus norvegicus clone CH230-205E14, WORKING DRA...    42   2.5    7
(EU677193) Oedogonium cardiacum strain SAG 575-1b chloroplas...    36   2.6    10
(AC106473) Rattus norvegicus clone CH230-156G23, *** SEQUENC...    44   2.8    6
(AL844506) Plasmodium falciparum chromosome  7.                    36   2.9    10
(EK327536) 1095467011717 Global-Ocean-Sampling_GS-31-01-01-1...    30   3.2    3
(CT574577) Zebrafish DNA sequence from clone CH73-384N10 in ...    46   3.2    1
(BX284619) Zebrafish DNA sequence from clone DKEY-251E24 in ...    46   3.2    1
(CU689395) Synthetic construct Homo sapiens gateway clone IM...    46   3.2    1
(AC161000) Mus musculus BAC clone RP23-51A9 from chromosome ...    46   3.2    1
(AC159280) Mus musculus BAC clone RP23-347A2 from chromosome...    46   3.2    1
(AP008209) Oryza sativa (japonica cultivar-group) genomic DN...    46   3.2    1
(AM465087) Vitis vinifera contig VV78X214880.2, whole genome...    46   3.2    1
(AC137634) Oryza sativa Japonica Group chromosome 3 clone OS...    46   3.2    1
(AC137075) Genomic sequence for Oryza sativa, Nipponbare str...    46   3.2    1
(EA691294) Sequence 70173 from patent US 7365185.                  46   3.2    1
(AC186217) Canis familiaris chromosome 18, clone XX-128D15, ...    46   3.2    1
(AE014825) Plasmodium falciparum 3D7 chromosome 14 section 1...    46   3.2    1
(AE014296) Drosophila melanogaster chromosome 3L, complete s...    46   3.2    1
(AC084197) Caenorhabditis elegans cosmid Y73B6BL, complete s...    46   3.2    1
(AC023676) Drosophila melanogaster 3L BAC RP98-22C11 (Roswel...    46   3.2    1
(AC009366) Drosophila melanogaster 3L BAC RP98-48E10 (Roswel...    46   3.2    1
(AC109455) Homo sapiens chromosome 5 clone RP11-221D10, comp...    46   3.2    1
(AC161024) Bos taurus clone CH240-84A21, WORKING DRAFT SEQUE...    46   3.2    1
(AC140039) Mus musculus chromosome 13 clone RP24-253M21 map ...    46   3.2    1
(AC128545) Rattus norvegicus clone CH230-139D18, *** SEQUENC...    46   3.2    1
(CU928415) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   3.2    1
(AC094230) Rattus norvegicus clone CH230-3B17, WORKING DRAFT...    46   3.2    1
(AC094144) Rattus norvegicus clone CH230-2L12, *** SEQUENCIN...    46   3.2    1
(AC053491) Homo sapiens chromosome 5 clone RP11-221D10, WORK...    46   3.2    1
(AL096784) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    46   3.2    1
(AC226814) Oryza minuta clone OM__Ba0113L08, *** SEQUENCING ...    46   3.2    1
(AC218781) Bos taurus clone CH240-294H15, WORKING DRAFT SEQU...    46   3.2    1
(AC218597) Bos taurus clone CH240-299N7, WORKING DRAFT SEQUE...    46   3.2    1
(AC216381) Oryza punctata clone OP__Ba0068A15, *** SEQUENCIN...    46   3.2    1
(AC213127) Oryza glaberrima clone OG_BBa0018D04, *** SEQUENC...    46   3.2    1
(AC184222) Strongylocentrotus purpuratus clone R3-40I21, WOR...    46   3.2    1
(AC183040) Bos taurus clone CH240-107N14, WORKING DRAFT SEQU...    46   3.2    1
(AC166925) Bos taurus clone CH240-108B18, WORKING DRAFT SEQU...    46   3.2    1
(AC017685) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    46   3.2    1
(AC015611) Homo sapiens clone RP11-45G1, WORKING DRAFT SEQUE...    46   3.2    1
(BH102170) RPCI-24-316K13.TV RPCI-24 Mus musculus genomic cl...    46   3.2    1
(AZ673436) ENTJK45TR Entamoeba histolytica Sheared DNA Entam...    46   3.2    1
(ET366492) S0286P09_T7 CHORI-214 Salmo salar genomic clone S...    46   3.2    1
(ET263473) S0025P02_T7 CHORI-214 Salmo salar genomic clone S...    46   3.2    1
(ET113802) QM0AAC24DB08FM1 CCH3 Citrus clementina genomic cl...    46   3.2    1
(EJ522791) 1092955156039 Global-Ocean-Sampling_GS-29-01-01-1...    46   3.2    1
(EJ217269) 1092351128832 Global-Ocean-Sampling_GS-27-01-01-1...    46   3.2    1
(EI278949) OR__Ba0091P18.f OR__Ba Oryza rufipogon genomic cl...    46   3.2    1
(DU275166) 1098448019649 CHORI-243 Ovis aries genomic clone ...    46   3.2    1
(CW755777) OG_BBa0062A18.f OG_BBa Oryza glaberrima genomic c...    46   3.2    1
(CT371561) Sus scrofa genomic clone CH242-487N7, genomic sur...    46   3.2    1
(CT311858) Sus scrofa genomic clone CH242-11L12, genomic sur...    46   3.2    1

>(BJ353013) Dictyostelium discoideum cDNA clone:dda48n17, 3' end,
           single read.
          Length = 734

 Score =  591 bits (298), Expect(5) = 0.0
 Identities = 298/298 (100%)
 Strand = Plus / Minus


Query: 499 ttggatcaatccaattttttattgtaaaaattttttgctccattgcaacaattacctgca 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 ttggatcaatccaattttttattgtaaaaattttttgctccattgcaacaattacctgca 675


Query: 559 tttcaatcagtgaagaagttcattctattttaaatgttcaatcctttgctccatatgaat 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tttcaatcagtgaagaagttcattctattttaaatgttcaatcctttgctccatatgaat 615


Query: 619 ttttaatttctttggttgcctcaattttctgtactatctcattatcaatattccttgcca 678
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ttttaatttctttggttgcctcaattttctgtactatctcattatcaatattccttgcca 555


Query: 679 ttagtaaagaaaaattaagtcagtattggccaatgaccaagtatagaattatgatattca 738
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ttagtaaagaaaaattaagtcagtattggccaatgaccaagtatagaattatgatattca 495


Query: 739 ttttctttattgaacaatttgaatatcttttctttgcacttattttcttgagaggtcc 796
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ttttctttattgaacaatttgaatatcttttctttgcacttattttcttgagaggtcc 437

 Score =  460 bits (232), Expect(5) = 0.0
 Identities = 232/232 (100%)
 Strand = Plus / Minus


Query: 806  aggttttaaaaactcctttgatcaaactatttttatacttcactttacagttgttgttac 865
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427  aggttttaaaaactcctttgatcaaactatttttatacttcactttacagttgttgttac 368


Query: 866  aatgtttttgttctcaattgtttatcttttcatttactcttataaaaactatagaaataa 925
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367  aatgtttttgttctcaattgtttatcttttcatttactcttataaaaactatagaaataa 308


Query: 926  agcttcaaatgaacctttagttggaagaaattttaaagactcctttggtttattaaatta 985
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307  agcttcaaatgaacctttagttggaagaaattttaaagactcctttggtttattaaatta 248


Query: 986  tttggatgtattaaatccaaaagatttgtttattgactttgctagcattttc 1037
            ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247  tttggatgtattaaatccaaaagatttgtttattgactttgctagcattttc 196

 Score =  125 bits (63), Expect(5) = 0.0
 Identities = 63/63 (100%)
 Strand = Plus / Minus


Query: 1127 tagtaatgaccaaccactatcaatccaaatggcttagttggatttcaaaggaatcaaaaa 1186
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106  tagtaatgaccaaccactatcaatccaaatggcttagttggatttcaaaggaatcaaaaa 47


Query: 1187 ttt 1189
            |||
Sbjct: 46   ttt 44

 Score = 34.2 bits (17), Expect(5) = 0.0
 Identities = 17/17 (100%)
 Strand = Plus / Minus


Query: 1205 aaaccaaatatttttat 1221
            |||||||||||||||||
Sbjct: 30   aaaccaaatatttttat 14

 Score = 32.2 bits (16), Expect(5) = 0.0
 Identities = 19/20 (95%)
 Strand = Plus / Minus


Query: 1183 aaaattttgaatcttcaaat 1202
            |||| |||||||||||||||
Sbjct: 51   aaaaatttgaatcttcaaat 32

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,499,008,089
Number of extensions: 105466771
Number of successful extensions: 11337929
Number of sequences better than 10.0: 243
Length of query: 1253
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1229
Effective length of database: 97,308,875,965
Effective search space: 119592608560985
Effective search space used: 119592608560985
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.10
Homology vs Protein 
Query= Contig-U13948-1 (Contig-U13948-1Q) /CSM_Contig/Contig-U13948-1Q.Seq.d
         (1253 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q5RET6) RecName: Full=Transmembrane protein 184C; AltName: Full...    66   3e-09
BT041548_1(BT041548|pid:none) Zea mays full-length cDNA clone ZM...    65   5e-09
AK068368_1(AK068368|pid:none) Oryza sativa Japonica Group cDNA c...    64   1e-08
(Q17QL9) RecName: Full=Transmembrane protein 184C; AltName: Full...    64   1e-08
BT030592_1(BT030592|pid:none) Bos taurus transmembrane protein 3...    64   1e-08
EF147385_1(EF147385|pid:none) Populus trichocarpa clone WS01230_...    62   4e-08
AC121239_21(AC121239|pid:none) Medicago truncatula clone mth1-8p...    59   3e-07
(Q6GQE1) RecName: Full=Transmembrane protein 184C; AltName: Full...    59   3e-07
BT055313_1(BT055313|pid:none) Zea mays full-length cDNA clone ZM...    59   5e-07
BT059008_1(BT059008|pid:none) Salmo salar clone ssal-rgf-519-216...    58   6e-07
CR762429_1(CR762429|pid:none) Zebrafish DNA sequence from clone ...    58   8e-07
AC096687_16(AC096687|pid:none) Oryza sativa chromosome 3 BAC OSJ...    58   8e-07
BC046128_1(BC046128|pid:none) Homo sapiens transmembrane protein...    57   1e-06
AX058632_1(AX058632|pid:none) Sequence 39 from Patent WO0075321....    57   1e-06
(Q5ZMP3) RecName: Full=Transmembrane protein 184C; AltName: Full...    55   4e-06
BC004056_1(BC004056|pid:none) Mus musculus transmembrane protein...    55   7e-06
(Q3TPR7) RecName: Full=Transmembrane protein 184C; AltName: Full...    55   7e-06
AK033404_1(AK033404|pid:none) Mus musculus 16 days embryo lung c...    55   7e-06
EU969316_1(EU969316|pid:none) Zea mays clone 328433 hypothetical...    53   3e-05
AM270385_15(AM270385|pid:none) Aspergillus niger contig An17c003...    51   1e-04
FN357305_28(FN357305|pid:none) Schistosoma mansoni genome sequen...    50   2e-04
EU958394_1(EU958394|pid:none) Zea mays clone 1688893 unknown mRNA.     48   6e-04
CP001160_107(CP001160|pid:none) Thalassiosira pseudonana CCMP133...    47   0.002
CT005272_694(CT005272|pid:none) Leishmania major strain Friedlin...    46   0.002
AL035539_13(AL035539|pid:none) Arabidopsis thaliana DNA chromoso...    42   0.035
FN357501_8(FN357501|pid:none) Schistosoma mansoni genome sequenc...    42   0.046
AC134886_12(AC134886|pid:none) Oryza sativa chromosome 3 BAC OSJ...    42   0.046
AM920436_1816(AM920436|pid:none) Penicillium chrysogenum Wiscons...    42   0.060
AP008209_1692(AP008209|pid:none) Oryza sativa (japonica cultivar...    41   0.079
AC012393_22(AC012393|pid:none) Arabidopsis thaliana chromosome I...    41   0.079
CR940348_465(CR940348|pid:none) Theileria annulata strain Ankara...    40   0.13
FM992690_507(FM992690|pid:none) Candida dubliniensis CD36 chromo...    40   0.13
AC130603_14(AC130603|pid:none) Oryza sativa (japonica cultivar-g...    40   0.18
CR942511_1(CR942511|pid:none) Xenopus tropicalis finished cDNA, ...    40   0.23
BC068743_1(BC068743|pid:none) Xenopus laevis hypothetical protei...    40   0.23
CP000582_10(CP000582|pid:none) Ostreococcus lucimarinus CCE9901 ...    39   0.39
AM502229_119(AM502229|pid:none) Leishmania infantum chromosome 11.     38   0.67
(Q09906) RecName: Full=UPF0206 membrane protein C30D11.06c;  &CU...    38   0.67
(P36142) RecName: Full=UPF0206 membrane protein YKR051W;  &AY692...    38   0.87
AY492007_1(AY492007|pid:none) Ephedra sp. Price 1416 maturase K ...    38   0.87
DQ212960_1(DQ212960|pid:none) Ephedra rhytidosperma maturase K (...    38   0.87
AY492021_1(AY492021|pid:none) Ephedra pedunculata maturase K (ma...    37   1.1
AY492009_1(AY492009|pid:none) Ephedra aphylla maturase K (matK) ...    37   1.1
AY492016_1(AY492016|pid:none) Ephedra intermedia maturase K (mat...    37   1.1
AY492026_1(AY492026|pid:none) Ephedra trifurca maturase K (matK)...    37   1.1
AP010819_2(AP010819|pid:none) Ephedra equisetina chloroplast DNA...    37   1.1
AF279805_1(AF279805|pid:none) Ephedra sinica maturase K (matK) g...    37   1.1
AY492020_1(AY492020|pid:none) Ephedra nevadensis maturase K (mat...    37   1.1
AY492010_1(AY492010|pid:none) Ephedra aspera maturase K (matK) g...    37   1.1
AY492028_1(AY492028|pid:none) Ephedra viridis maturase K (matK) ...    37   1.1
AY492013_1(AY492013|pid:none) Ephedra distachya maturase K (matK...    37   1.1
AY492027_1(AY492027|pid:none) Ephedra tweediana maturase K (matK...    37   1.1
AY492008_1(AY492008|pid:none) Ephedra antisyphilitica maturase K...    37   1.1
CP001330_546(CP001330|pid:none) Micromonas sp. RCC299 chromosome...    37   1.5
AE014187_207(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    37   1.5
(Q8BG09) RecName: Full=Transmembrane protein 184B;  &AK028196_1(...    37   1.9
AE013599_1691(AE013599|pid:none) Drosophila melanogaster chromos...    37   1.9
BC099785_1(BC099785|pid:none) Rattus norvegicus transmembrane pr...    37   1.9
BC093245_1(BC093245|pid:none) Danio rerio zgc:112178, mRNA (cDNA...    37   1.9
AL844506_48(AL844506|pid:none) Plasmodium falciparum 3D7 chromos...    36   2.5
AY063764_1(AY063764|pid:none) Plasmodium vinckei vinckepain-2 mR...    36   2.5
AF250284_112(AF250284|pid:none) Amsacta moorei entomopoxvirus, c...    36   3.3
AL034556_17(AL034556|pid:none) Plasmodium falciparum MAL3P5, com...    36   3.3
AE014185_318(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    36   3.3
AL844509_127(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    35   4.3
(Q55GU0) RecName: Full=Probable serine/threonine-protein kinase ...    35   4.3
AE014187_169(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    35   4.3
(Q555U5) RecName: Full=Probable inactive serine/threonine-protei...    35   4.3
CU928170_242(CU928170|pid:none) Kluyveromyces thermotolerans str...    35   5.6
CP000496_596(CP000496|pid:none) Pichia stipitis CBS 6054 chromos...    35   5.6
AJ851700_1(AJ851700|pid:none) Gallus gallus mRNA for hypothetica...    35   5.6
(Q5UP04) RecName: Full=Putative ankyrin repeat protein R748;  &A...    35   7.4
CU638744_365(CU638744|pid:none) Podospora anserina genomic DNA c...    35   7.4
AE014187_681(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    35   7.4
AL844504_130(AL844504|pid:none) Plasmodium falciparum 3D7 chromo...    35   7.4
CP000814_464(CP000814|pid:none) Campylobacter jejuni subsp. jeju...    35   7.4
AE014188_428(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    34   9.6
CR382135_452(CR382135|pid:none) Debaryomyces hansenii strain CBS...    34   9.6
AE014186_292(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    34   9.6
CR382130_638(CR382130|pid:none) Yarrowia lipolytica strain CLIB1...    34   9.6
AL844509_38(AL844509|pid:none) Plasmodium falciparum 3D7 chromos...    34   9.6
CP000013_561(CP000013|pid:none) Borrelia garinii PBi, complete g...    34   9.6

>(Q5RET6) RecName: Full=Transmembrane protein 184C; AltName:
           Full=Transmembrane protein 34;
           &CR857430_1(CR857430|pid:none)
          Length = 438

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 61/294 (20%), Positives = 123/294 (41%), Gaps = 12/294 (4%)
 Frame = +3

Query: 84  LLFFFTCLISFFLVNRHLVNYSSPNVQKNVVRIVMFLPLNSGLSILSSIFPGIAIFNSLV 263
           +    T  IS +++ +HLV+Y+ P +QK ++RI+  +P+ S  S ++  +PGIAI+
Sbjct: 54  IFLLLTIPISLWVILQHLVHYTQPELQKPIIRILWMVPIYSLDSWIALKYPGIAIYVDTC 113

Query: 264 RNWYDKXXXXXXXXXXXXXXXXXXXXXXMAFTAHCFFSMMTNSIGEK--NMLDLFESQGK 437
           R  Y+                        A+  + F   +TN +  +  N++ + E++ +
Sbjct: 114 RECYE------------------------AYVIYNFMGFLTNYLTNRYPNLVLILEAKDQ 149

Query: 438 MK----FLXCKVMKLNRKLFNTLRFGSIQFFIVKXXXXXXXXXXXXXXEEVHSILNVQSF 605
            K       C    +   L    + G +Q+ +V+                     +  +
Sbjct: 150 QKHFPPLCCCPPWAMGEVLLFRCKLGVLQYTVVRPFTTIVALICELLGIYDEGNFSFSNA 209

Query: 606 APYEFLISLVASIFCTISLSIFLAISKEKLSQYWPMTKYRXXXXXXXXXXXXXXXXALIF 785
             Y  +I+ ++ +F    L +F  + KE+LS   P+ K+                 AL+
Sbjct: 210 WTYLVIINNMSQLFAMYCLLLFYKVLKEELSPIQPVGKFLCVKLVVFVSFWQAVVIALLV 269

Query: 786 LRGPFFLGFKNSFD-QTI-----FILHFTVVVTMFLFSIVYLFIYSYKNYRNKA 929
             G   +  K++++ QT+      +  F + + MFL +I + + +SYK Y  +A
Sbjct: 270 KVG--VISEKHTWEWQTVEAVATGLQDFIICIEMFLAAIAHHYTFSYKPYVQEA 321

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,650,279,088
Number of extensions: 29198872
Number of successful extensions: 89539
Number of sequences better than 10.0: 82
Number of HSP's gapped: 88989
Number of HSP's successfully gapped: 85
Length of query: 417
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 286
Effective length of database: 627,191,635
Effective search space: 179376807610
Effective search space used: 179376807610
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.91  gvh: 0.48  alm: 0.21  top: 0.30  tms: 0.27  mit: 0.30  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 24.0 %: mitochondrial
	 20.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: Golgi
	  4.0 %: nuclear
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U13948-1 is end
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 4
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 2
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0