Contig-U13945-1
Contig ID Contig-U13945-1
Contig update 2002.12.18
Contig sequence
>Contig-U13945-1 (Contig-U13945-1Q) /CSM_Contig/Contig-U13945-1Q.Seq.d
ATTTACTCATACTTTAATTTATAATTTGCTTTTTTCTTATATATTTCATA
TATTTATTATTTATTTATTTATTTATTTTTTTTACAAAGGGGAAAACAAA
GATATTGGTGTTTGGTCTTTCTATTGTTTTTCTTTGTAATAAATAACCTC
AAACACCCACACACAAAAACAAAAATAAACACAATGAAATCCATACCAAT
AATTTTATTAGTATTGATTGGATTATTATTAGCATCTGTATATTCCCATG
ACATTTTAATTACAGAAAAAGGACAAAAATCATTAGATAAATTAGATAAA
GCAGCAGCAACAACTTTACAACATGGTGAAAACATTCAATTAAGCTGTGA
TGTTTGTCAAATTGGTGCATCATTATTAGAAGATTTCATTAAAAAGAATG
CTTCATTAACAGAAATAATTAAAGGTTTATCTGACCTTTGTATTGCCTCA
AAAGAAGAACAACCAGAAGTTTGTACAGGTATTTTAAATAATTATGTACC
AATTATAGTTGATGTACTTATTCAATCAGATTTTACACCATCACAATTAT
GTGGATATTTTAAGATTTGTTCAGCAACAGGATCATCAGAATCATCATCA
ATTTCAAATTCATTTGATAATGAATATAGACAAGAATCATTTAATAAACC
AACAATGAAAGTTAATAAGAAACCACAATATAAAGATTTATCAAATCAAG
AACCATTGGTAAAAAAATTTAAAGGTAATGATAGTATTGGTTATATTTTA
CAAATTTCTGATGTACATTTCGATCCAGATTATAAAGTTGGTTCAAATCC
AAATTGTGGTAGACCATTATGTTGTAGAGATGGTGTAGGTTCAGCAGGTC
CAATAGGTCATTACCTTTGCGATATCCCATTTAGTACTGTTGAATTGATT
TTCCAACATTTGGCAACATTGACTGATCAATTGGATTTCATAGTTTGGAC
AGGTGATAATCCACCACACAATGTATGGGAACAATCACAAGCTCAACAAG
AGTTGGCCACCGCAACATTGGCACAGGTCATTCAAAAGACTTTCCCAAAT
ACACCAGTTTTACCATCGTTGGGTAATCATGAAGCTTACCCAGCCGATCA
ATACGTTTTACCAAATTCACAATGGTTATTGGACTCGATTTACACCTATT
GGGCACCATGGTTAGATGCCGATGCTTTGGAGTTGGTTAAAGAGCGTGGT
TATTATACATCGTTGATTAAGCCAGGTCTTCGTGTTATGTCATTGAATAC
TTTGGAGAATGATATGATCAATTTCTATAATCTCCTCCCAACCTATTTAA
AAGGCCCAAATAATCAATCGGATTGGATGATCAATACATTGGAACAAGCT
CAATCCAATGGTGAAAAGGTTTTAATCATTGGTCATATTCCATGCACTGT
TAAAAGTGCTTCAACCGATGGTTGGTGTGCAATGTATGAACAAGTGGTAG
GTCAATTCTCTGATGTTATCATTGGTCAATTGTATGGCCATACTCATTAC
GATCAATTTTCAGTATTCTCCGATGTTGCAACTCATACAATTCCAACCGG
TATGAATTATATCGTTCCATCATTAACAACCTATCAAAATCATGAACCTG
GTTATCGTATTTATCAATTTGATTATTCAACTAATCAAATTGTAAACTAC
TATCAATATCATGCAAACATTACTGAAGCAAATGAAACTGGTGCCTTAAA
TTTCCAATTGACTTATAGTGCTAAAGAACTCTATAATATGGATGATCTTT
CACCTACCTCTTGGACAAAAGTTGCCAATCAAATGAAAACTAATTCAACA
ATGTTTAATAGTTATTTCGAAAATCTTAGTAGTTCACCAATTAAAGAATC
TTGTGATCAAGCTTGTCAAACTAAAGGATTTGTCAAATCTTTGGTATCAC
TTCTTCTGAATTCGATAAATGTTATGGTGTTTAAAAAAAAAAAAAAAACC
TCAATTAACTAAATTTACACTTAA

Gap no gap
Contig length 1974
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 4560070
End point 4558085
Strand (PLUS/MINUS) MINUS
Number of clones 11
Number of EST 16
Link to clone list U13945
List of clone(s)

est1=VHG223F,1,640
est2=AFN745F,15,575
est3=VHC519F,23,640
est4=AFI211F,56,657
est5=VFH433F,355,988
est6=VFL234F,419,1006
est7=VFH473F,567,1097
est8=SLK658F,744,1419
est9=VHB601Z,1137,1914
est10=VHC519Z,1197,1859
est11=VFL234Z,1240,1913
est12=VHJ154Z,1244,1880
est13=VHG223Z,1304,1885
est14=VFH473Z,1342,1857
est15=VHG422Z,1616,1793
est16=SLK658Z,1756,1985
Translated Amino Acid sequence
iysyfnl*FAFFLYISYIYYLFIYLFFLQRGKQRYWCLVFLLFFFVINNLKHPHTKTKIN
TMKSIPIILLVLIGLLLASVYSHDILITEKGQKSLDKLDKAAATTLQHGENIQLSCDVCQ
IGASLLEDFIKKNASLTEIIKGLSDLCIASKEEQPEVCTGILNNYVPIIVDVLIQSDFTP
SQLCGYFKICSATGSSESSSISNSFDNEYRQESFNKPTMKVNKKPQYKDLSNQEPLVKKF
KGNDSIGYILQISDVHFDPDYKVGSNPNCGRPLCCRDGVGSAGPIGHYLCDIPFSTVELI
FQHLATLTDQLDFIVWTGDNPPHNVWEQSQAQQELATATLAQVIQKTFPNTPVLPSLGNH
EAYPADQYVLPNSQWLLDSIYTYWAPWLDADALELVKERGYYTSLIKPGLRVMSLNTLEN
DMINFYNLLPTYLKGPNNQSDWMINTLEQAQSNGEKVLIIGHIPCTVKSASTDGWCAMYE
QVVGQFSDVIIGQLYGHTHYDQFSVFSDVATHTIPTGMNYIVPSLTTYQNHEPGYRIYQF
DYSTNQIVNYYQYHANITEANETGALNFQLTYSAKELYNMDDLSPTSWTKVANQMKTNST
MFNSYFENLSSSPIKESCDQACQTKGFVKSLVSLLLNSINVMVFKKKKKTSIN*iyt*


Translated Amino Acid sequence (All Frames)
Frame A:
iysyfnl*FAFFLYISYIYYLFIYLFFLQRGKQRYWCLVFLLFFFVINNLKHPHTKTKIN
TMKSIPIILLVLIGLLLASVYSHDILITEKGQKSLDKLDKAAATTLQHGENIQLSCDVCQ
IGASLLEDFIKKNASLTEIIKGLSDLCIASKEEQPEVCTGILNNYVPIIVDVLIQSDFTP
SQLCGYFKICSATGSSESSSISNSFDNEYRQESFNKPTMKVNKKPQYKDLSNQEPLVKKF
KGNDSIGYILQISDVHFDPDYKVGSNPNCGRPLCCRDGVGSAGPIGHYLCDIPFSTVELI
FQHLATLTDQLDFIVWTGDNPPHNVWEQSQAQQELATATLAQVIQKTFPNTPVLPSLGNH
EAYPADQYVLPNSQWLLDSIYTYWAPWLDADALELVKERGYYTSLIKPGLRVMSLNTLEN
DMINFYNLLPTYLKGPNNQSDWMINTLEQAQSNGEKVLIIGHIPCTVKSASTDGWCAMYE
QVVGQFSDVIIGQLYGHTHYDQFSVFSDVATHTIPTGMNYIVPSLTTYQNHEPGYRIYQF
DYSTNQIVNYYQYHANITEANETGALNFQLTYSAKELYNMDDLSPTSWTKVANQMKTNST
MFNSYFENLSSSPIKESCDQACQTKGFVKSLVSLLLNSINVMVFKKKKKTSIN*iyt*


Frame B:
fthtliynllfsyifhifiiylfiyffykgenkdigvwsfycfsl**itsnthtqkqk*t
q*npyq*fy*y*ldyy*hlyipmtf*lqkkdknh*in*ikqqqqlynmvktfn*avmfvk
lvhhy*kislkrmlh*qk*lkvyltfvlpqkknnqkfvqvf*iimyql*lmylfnqilhh
hnyvdilrfvqqqdhqnhhqfqihlimnidknhlinqq*klirnhnikiyqiknhw*knl
kvmivlvifykflmyisiqiiklvqiqivvdhyvvemv*vqqvq*vitfaishlvlln*f
sniwqh*linwis*fgqviihhtmygnnhklnkswppqhwhrsfkrlsqihqfyhrwvim
kltqpintfyqihngywtrftpighhg*mpmlwswlksvviihr*lsqvfvlch*ilwrm
i*sisiissqpi*kaqiinrig*sihwnklnpmvkrf*slvifhallkvlqpmvgvqcmn
kw*vnslmlslvncmailitinfqyspmlqliqfqpv*iisfhh*qpikimnlvivfinl
iiqlikl*ttinimqtllkqmklvp*isn*livlknsiiwmifhlplgqklpik*kliqq
cliviskilvvhqlknlviklvklkdlsnlwyhff*ir*mlwclkkkkkpqltkftl


Frame C:
llil*fiicffliyfiyllfiylfifftkgktkilvfglsivflcnk*pqtpthknknkh
neihtnnfisidwiiisicifp*hfnyrkrtkiir*ir*sssnnfttw*khsikl*clsn
wciiirrfh*kecfinrnn*rfi*plyclkrrttrslyryfk*lctnys*ctysirfyti
timwif*dlfsnriiriiinfkfi***i*trii**tnnes**etti*rfiksrtigkki*
r***ywlyftnf*ctfrsrl*swfksklw*timl*rwcrfsrsnrslplrypi*yc*idf
ptfgnid*sigfhsldr**sttqcmgtitsstrvghrnigtghskdfpkytsftivg*s*
slpsrsirftkftmvigldlhllgtmvrcrcfgvg*rawllyivd*arsscyvieyfge*
ydqfl*sppnlfkrpk*siglddqyigtssiqw*kgfnhwsysmhc*kcfnrwlvcnv*t
sgrsil*cyhwsivwpyslrsifsilrccnsynsnryelyrsiinnlsks*twlsylsi*
lfn*snckllsisckhy*sk*nwclkfpidl*c*rtl*yg*sftylldkscqsnen*fnn
v**lfrks**ftn*ril*sslsn*ricqifgitssefdkcygv*kkkknln*lnlhl


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U13945-1 (Contig-U13945-1Q)
/CSM_Contig/Contig-U13945-1Q.Seq.d
(1974 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U13945-1 (Contig-U13945-1Q) /CSM_Contig/Conti... 3424 0.0
Contig-U11689-1 (Contig-U11689-1Q) /CSM_Contig/Conti... 52 2e-06
Contig-U05291-1 (Contig-U05291-1Q) /CSM_Contig/Conti... 50 9e-06
Contig-U12138-1 (Contig-U12138-1Q) /CSM_Contig/Conti... 44 6e-04
Contig-U14394-1 (Contig-U14394-1Q) /CSM_Contig/Conti... 38 0.036
Contig-U12921-1 (Contig-U12921-1Q) /CSM_Contig/Conti... 38 0.036
Contig-U12159-1 (Contig-U12159-1Q) /CSM_Contig/Conti... 38 0.036
Contig-U09312-1 (Contig-U09312-1Q) /CSM_Contig/Conti... 38 0.036
Contig-U08617-1 (Contig-U08617-1Q) /CSM_Contig/Conti... 38 0.036
Contig-U11253-1 (Contig-U11253-1Q) /CSM_Contig/Conti... 36 0.14

>Contig-U13945-1 (Contig-U13945-1Q) /CSM_Contig/Contig-U13945-1Q.Seq.d
Length = 1974

Score = 3424 bits (1727), Expect = 0.0
Identities = 1741/1748 (99%)
Strand = Plus / Plus


Query: 185 tgaaatccataccaataattttattagtattgattggattattattagcatctgtatatt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 tgaaatccataccaataattttattagtattgattggattattattagcatctgtatatt 244


Query: 245 cccatgacattttaattacagaaaaaggacaaaaatcattagataaattagataaagcag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 cccatgacattttaattacagaaaaaggacaaaaatcattagataaattagataaagcag 304


Query: 305 cagcaacaactttacaacatggtgaaaacattcaattaagctgtgatgtttgtcaaattg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 cagcaacaactttacaacatggtgaaaacattcaattaagctgtgatgtttgtcaaattg 364


Query: 365 gtgcatcattattagaagatttcattaaaaagaatgcttcattaacagaaataattaaag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gtgcatcattattagaagatttcattaaaaagaatgcttcattaacagaaataattaaag 424


Query: 425 gtttatctgacctttgtattgcctcaaaagaagaacaaccagaagtttgtacaggtattt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gtttatctgacctttgtattgcctcaaaagaagaacaaccagaagtttgtacaggtattt 484


Query: 485 taaataattatgtaccaattatagttgatgtacttattcaatcagattttacaccatcac 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 taaataattatgtaccaattatagttgatgtacttattcaatcagattttacaccatcac 544


Query: 545 aattatgtggatattttaagatttgttcagcaacaggatcatcagaatcatcatcaattt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 aattatgtggatattttaagatttgttcagcaacaggatcatcagaatcatcatcaattt 604


Query: 605 caaattcatttgataatgaatatagacaagaatcatttaataaaccaacaatgaaagtta 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 caaattcatttgataatgaatatagacaagaatcatttaataaaccaacaatgaaagtta 664


Query: 665 ataagaaaccacaatataaagatttatcaaatcaagaaccattggtnnnnnnntttaaag 724
|||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 665 ataagaaaccacaatataaagatttatcaaatcaagaaccattggtaaaaaaatttaaag 724


Query: 725 gtaatgatagtattggttatattttacaaatttctgatgtacatttcgatccagattata 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 gtaatgatagtattggttatattttacaaatttctgatgtacatttcgatccagattata 784


Query: 785 aagttggttcaaatccaaattgtggtagaccattatgttgtagagatggtgtaggttcag 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 aagttggttcaaatccaaattgtggtagaccattatgttgtagagatggtgtaggttcag 844


Query: 845 caggtccaataggtcattacctttgcgatatcccatttagtactgttgaattgattttcc 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 caggtccaataggtcattacctttgcgatatcccatttagtactgttgaattgattttcc 904


Query: 905 aacatttggcaacattgactgatcaattggatttcatagtttggacaggtgataatccac 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 aacatttggcaacattgactgatcaattggatttcatagtttggacaggtgataatccac 964


Query: 965 cacacaatgtatgggaacaatcacaagctcaacaagagttggccaccgcaacattggcac 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965 cacacaatgtatgggaacaatcacaagctcaacaagagttggccaccgcaacattggcac 1024


Query: 1025 aggtcattcaaaagactttcccaaatacaccagttttaccatcgttgggtaatcatgaag 1084
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1025 aggtcattcaaaagactttcccaaatacaccagttttaccatcgttgggtaatcatgaag 1084


Query: 1085 cttacccagccgatcaatacgttttaccaaattcacaatggttattggactcgatttaca 1144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1085 cttacccagccgatcaatacgttttaccaaattcacaatggttattggactcgatttaca 1144


Query: 1145 cctattgggcaccatggttagatgccgatgctttggagttggttaaagagcgtggttatt 1204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1145 cctattgggcaccatggttagatgccgatgctttggagttggttaaagagcgtggttatt 1204


Query: 1205 atacatcgttgattaagccaggtcttcgtgttatgtcattgaatactttggagaatgata 1264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1205 atacatcgttgattaagccaggtcttcgtgttatgtcattgaatactttggagaatgata 1264


Query: 1265 tgatcaatttctataatctcctcccaacctatttaaaaggcccaaataatcaatcggatt 1324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1265 tgatcaatttctataatctcctcccaacctatttaaaaggcccaaataatcaatcggatt 1324


Query: 1325 ggatgatcaatacattggaacaagctcaatccaatggtgaaaaggttttaatcattggtc 1384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1325 ggatgatcaatacattggaacaagctcaatccaatggtgaaaaggttttaatcattggtc 1384


Query: 1385 atattccatgcactgttaaaagtgcttcaaccgatggttggtgtgcaatgtatgaacaag 1444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1385 atattccatgcactgttaaaagtgcttcaaccgatggttggtgtgcaatgtatgaacaag 1444


Query: 1445 tggtaggtcaattctctgatgttatcattggtcaattgtatggccatactcattacgatc 1504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1445 tggtaggtcaattctctgatgttatcattggtcaattgtatggccatactcattacgatc 1504


Query: 1505 aattttcagtattctccgatgttgcaactcatacaattccaaccggtatgaattatatcg 1564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1505 aattttcagtattctccgatgttgcaactcatacaattccaaccggtatgaattatatcg 1564


Query: 1565 ttccatcattaacaacctatcaaaatcatgaacctggttatcgtatttatcaatttgatt 1624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1565 ttccatcattaacaacctatcaaaatcatgaacctggttatcgtatttatcaatttgatt 1624


Query: 1625 attcaactaatcaaattgtaaactactatcaatatcatgcaaacattactgaagcaaatg 1684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1625 attcaactaatcaaattgtaaactactatcaatatcatgcaaacattactgaagcaaatg 1684


Query: 1685 aaactggtgccttaaatttccaattgacttatagtgctaaagaactctataatatggatg 1744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1685 aaactggtgccttaaatttccaattgacttatagtgctaaagaactctataatatggatg 1744


Query: 1745 atctttcacctacctcttggacaaaagttgccaatcaaatgaaaactaattcaacaatgt 1804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1745 atctttcacctacctcttggacaaaagttgccaatcaaatgaaaactaattcaacaatgt 1804


Query: 1805 ttaatagttatttcgaaaatcttagtagttcaccaattaaagaatcttgtgatcaagctt 1864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1805 ttaatagttatttcgaaaatcttagtagttcaccaattaaagaatcttgtgatcaagctt 1864


Query: 1865 gtcaaactaaaggatttgtcaaatctttggtatcacttcttctgaattcgataaatgtta 1924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1865 gtcaaactaaaggatttgtcaaatctttggtatcacttcttctgaattcgataaatgtta 1924


Query: 1925 tggtgttt 1932
||||||||
Sbjct: 1925 tggtgttt 1932


Score = 131 bits (66), Expect = 3e-30
Identities = 66/66 (100%)
Strand = Plus / Plus


Query: 84 acaaaggggaaaacaaagatattggtgtttggtctttctattgtttttctttgtaataaa 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 acaaaggggaaaacaaagatattggtgtttggtctttctattgtttttctttgtaataaa 143


Query: 144 taacct 149
||||||
Sbjct: 144 taacct 149


Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus


Query: 1949 cctcaattaactaaatttacacttaa 1974
||||||||||||||||||||||||||
Sbjct: 1949 cctcaattaactaaatttacacttaa 1974


>Contig-U11689-1 (Contig-U11689-1Q) /CSM_Contig/Contig-U11689-1Q.Seq.d
Length = 1593

Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus


Query: 944 tttggacaggtgataatccaccacac 969
||||||||||||||||||||||||||
Sbjct: 804 tttggacaggtgataatccaccacac 829


Score = 30.2 bits (15), Expect = 8.7
Identities = 21/23 (91%)
Strand = Plus / Plus


Query: 803 attgtggtagaccattatgttgt 825
|||||||| |||||||||||||
Sbjct: 642 attgtggtgaaccattatgttgt 664


>Contig-U05291-1 (Contig-U05291-1Q) /CSM_Contig/Contig-U05291-1Q.Seq.d
Length = 516

Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Plus


Query: 276 aaaatcattagataaattagataaa 300
|||||||||||||||||||||||||
Sbjct: 321 aaaatcattagataaattagataaa 345


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 23,118
Number of Sequences: 6905
Number of extensions: 23118
Number of successful extensions: 2679
Number of sequences better than 10.0: 301
length of query: 1974
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1958
effective length of database: 5,564,391
effective search space: 10895077578
effective search space used: 10895077578
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.16
Homology vs DNA
Query= Contig-U13945-1 (Contig-U13945-1Q) /CSM_Contig/Contig-U13945-1Q.Seq.d
(1974 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ437348) Dictyostelium discoideum cDNA clone:ddv34a02, 3' ... 1493 0.0 2
(BJ438002) Dictyostelium discoideum cDNA clone:ddv36e05, 3' ... 1314 0.0 1
(BJ433894) Dictyostelium discoideum cDNA clone:ddv23c10, 3' ... 1298 0.0 2
(AU060621) Dictyostelium discoideum slug cDNA, clone SLK658. 1245 0.0 2
(BJ442360) Dictyostelium discoideum cDNA clone:ddv49k13, 3' ... 1205 0.0 2
(BJ440270) Dictyostelium discoideum cDNA clone:ddv43m06, 3' ... 1154 0.0 1
(BJ413362) Dictyostelium discoideum cDNA clone:ddv15b10, 5' ... 726 0.0 2
(BJ415652) Dictyostelium discoideum cDNA clone:ddv23c10, 5' ... 599 0.0 2
(BJ431835) Dictyostelium discoideum cDNA clone:ddv15b20, 3' ... 977 0.0 2
(BJ326578) Dictyostelium discoideum cDNA clone:dda17e04, 5' ... 892 0.0 2
(BJ421587) Dictyostelium discoideum cDNA clone:ddv43m06, 5' ... 884 0.0 2
(BJ419418) Dictyostelium discoideum cDNA clone:ddv36e05, 5' ... 884 0.0 2
(BJ328487) Dictyostelium discoideum cDNA clone:dda28j11, 5' ... 500 0.0 3
(BJ417841) Dictyostelium discoideum cDNA clone:ddv15b20, 5' ... 547 e-151 1
(C83986) Dictyostelium discoideum slug cDNA, clone SLK658. 168 9e-88 4
(BJ440265) Dictyostelium discoideum cDNA clone:ddv43l06, 3' ... 329 2e-85 1
(BJ364121) Dictyostelium discoideum cDNA clone:ddc30f01, 5' ... 52 1e-04 3
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595... 34 0.21 10
(CG755729) P051-1-H10.yc Ppa EcoRI BAC Library Pristionchus ... 48 1.3 1
(CG755728) P051-1-H10.yb Ppa EcoRI BAC Library Pristionchus ... 48 1.3 1
(AC152547) Xenopus tropicalis clone CH216-1M22, WORKING DRAF... 40 1.9 5
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 32 3.4 14
(U60086) Dictyostelium discoideum multidrug resistance trans... 34 4.2 5
(AM457192) Vitis vinifera, whole genome shotgun sequence, co... 46 5.1 1
(AC160924) Medicago truncatula chromosome 7 clone mte1-74g1,... 46 5.1 1
(AC148764) Medicago truncatula clone mth2-30o12, complete se... 46 5.1 1
(AR318817) Sequence 1367 from patent US 6562958. 46 5.1 1
(CU694299) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 5.1 1
(FI153103) SGS5776 Sugarcane cv. Co7201 size fractionated ge... 46 5.1 1
(EJ986963) 1093023017373 Global-Ocean-Sampling_GS-30-02-01-1... 46 5.1 1
(EJ855470) 1093017915701 Global-Ocean-Sampling_GS-30-02-01-1... 46 5.1 1
(EJ737608) 1092961208675 Global-Ocean-Sampling_GS-30-02-01-1... 46 5.1 1
(DX464742) Cpl06558 Papaya Genomic DNA BAC Library Carica pa... 46 5.1 1
(CL027848) CH216-26L8_RM1.1 CH216 Xenopus (Silurana) tropica... 46 5.1 1
(AM858925) Crassostrea gigas EST, 5' end sequence, clone cdn... 46 5.1 1
(CX895302) JGI_CAAM6312.rev NIH_XGC_tropTe3 Xenopus (Siluran... 46 5.1 1
(BI514779) BB160016A20G02.5 Bee Brain Normalized Library, BB... 46 5.1 1
(CU468230) Acinetobacter baumannii str. SDF, complete genome. 46 5.1 1
(CU459141) Acinetobacter baumannii str. AYE, complete genome. 46 5.1 1
(CP000863) Acinetobacter baumannii ACICU, complete genome. 46 5.1 1
(CP000847) Rickettsia akari str. Hartford, complete genome. 46 5.1 1
(CP000521) Acinetobacter baumannii ATCC 17978, complete genome. 46 5.1 1
(CZ931193) 249077 Tomato EcoRI BAC Library Solanum lycopersi... 40 9.8 2

>(BJ437348) Dictyostelium discoideum cDNA clone:ddv34a02, 3' end,
single read.
Length = 778

Score = 1493 bits (753), Expect(2) = 0.0
Identities = 753/753 (100%)
Strand = Plus / Minus


Query: 1127 tattggactcgatttacacctattgggcaccatggttagatgccgatgctttggagttgg 1186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tattggactcgatttacacctattgggcaccatggttagatgccgatgctttggagttgg 719


Query: 1187 ttaaagagcgtggttattatacatcgttgattaagccaggtcttcgtgttatgtcattga 1246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ttaaagagcgtggttattatacatcgttgattaagccaggtcttcgtgttatgtcattga 659


Query: 1247 atactttggagaatgatatgatcaatttctataatctcctcccaacctatttaaaaggcc 1306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 atactttggagaatgatatgatcaatttctataatctcctcccaacctatttaaaaggcc 599


Query: 1307 caaataatcaatcggattggatgatcaatacattggaacaagctcaatccaatggtgaaa 1366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 caaataatcaatcggattggatgatcaatacattggaacaagctcaatccaatggtgaaa 539


Query: 1367 aggttttaatcattggtcatattccatgcactgttaaaagtgcttcaaccgatggttggt 1426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 aggttttaatcattggtcatattccatgcactgttaaaagtgcttcaaccgatggttggt 479


Query: 1427 gtgcaatgtatgaacaagtggtaggtcaattctctgatgttatcattggtcaattgtatg 1486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gtgcaatgtatgaacaagtggtaggtcaattctctgatgttatcattggtcaattgtatg 419


Query: 1487 gccatactcattacgatcaattttcagtattctccgatgttgcaactcatacaattccaa 1546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gccatactcattacgatcaattttcagtattctccgatgttgcaactcatacaattccaa 359


Query: 1547 ccggtatgaattatatcgttccatcattaacaacctatcaaaatcatgaacctggttatc 1606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ccggtatgaattatatcgttccatcattaacaacctatcaaaatcatgaacctggttatc 299


Query: 1607 gtatttatcaatttgattattcaactaatcaaattgtaaactactatcaatatcatgcaa 1666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gtatttatcaatttgattattcaactaatcaaattgtaaactactatcaatatcatgcaa 239


Query: 1667 acattactgaagcaaatgaaactggtgccttaaatttccaattgacttatagtgctaaag 1726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 acattactgaagcaaatgaaactggtgccttaaatttccaattgacttatagtgctaaag 179


Query: 1727 aactctataatatggatgatctttcacctacctcttggacaaaagttgccaatcaaatga 1786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 aactctataatatggatgatctttcacctacctcttggacaaaagttgccaatcaaatga 119


Query: 1787 aaactaattcaacaatgtttaatagttatttcgaaaatcttagtagttcaccaattaaag 1846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 aaactaattcaacaatgtttaatagttatttcgaaaatcttagtagttcaccaattaaag 59


Query: 1847 aatcttgtgatcaagcttgtcaaactaaaggat 1879
|||||||||||||||||||||||||||||||||
Sbjct: 58 aatcttgtgatcaagcttgtcaaactaaaggat 26

Score = 28.2 bits (14), Expect(2) = 0.0
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 1889 ctttggtatcactt 1902
||||||||||||||
Sbjct: 14 ctttggtatcactt 1

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 2,105,697,629
Number of extensions: 122104984
Number of successful extensions: 10761701
Number of sequences better than 10.0: 44
Length of query: 1974
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1950
Effective length of database: 97,308,875,965
Effective search space: 189752308131750
Effective search space used: 189752308131750
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)

protein update 2009. 7.10
Homology vs Protein
Query= Contig-U13945-1 (Contig-U13945-1Q) /CSM_Contig/Contig-U13945-1Q.Seq.d
(1974 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AY261860_1(AY261860|pid:none) Ciona intestinalis sphingomyelin p... 280 2e-73
AE013599_4075(AE013599|pid:none) Drosophila melanogaster chromos... 276 2e-72
AE013599_4074(AE013599|pid:none) Drosophila melanogaster chromos... 276 2e-72
(Q54C16) RecName: Full=Sphingomyelin phosphodiesterase B; ... 273 2e-71
(Q0VD19) RecName: Full=Sphingomyelin phosphodiesterase; ... 253 2e-65
A39825(S27009;S36357;A39825;JX0276;S06957;I55567;A42801;) sphing... 251 5e-65
X63600_1(X63600|pid:none) H.sapiens genes for acid sphingomyelin... 251 7e-65
(P17405) RecName: Full=Sphingomyelin phosphodiesterase; ... 251 9e-65
M81780_2(M81780|pid:none) Homo sapiens acid sphingomyelinase (SM... 251 9e-65
AK292388_1(AK292388|pid:none) Homo sapiens cDNA FLJ77600 complet... 249 2e-64
BC083780_1(BC083780|pid:none) Rattus norvegicus sphingomyelin ph... 248 4e-64
X59960_1(X59960|pid:none) H.sapiens mRNA for sphingomyelinase. 248 8e-64
(Q23498) RecName: Full=Sphingomyelin phosphodiesterase 2; ... 247 1e-63
(Q04519) RecName: Full=Sphingomyelin phosphodiesterase; ... 245 4e-63
AK149579_1(AK149579|pid:none) Mus musculus adult male liver tumo... 245 4e-63
BC011304_1(BC011304|pid:none) Mus musculus sphingomyelin phospho... 243 2e-62
T15291(T15291)sphingomyelin phosphodiesterase (EC 3.1.4.12), aci... 230 2e-58
T27869(T27869)sphingomyelin phosphodiesterase (EC 3.1.4.12), aci... 210 1e-52
BT022820_1(BT022820|pid:none) Drosophila melanogaster IP13211 fu... 207 9e-52
(Q9UAY4) RecName: Full=Putative sphingomyelin phosphodiesterase ... 207 1e-51
(Q92484) RecName: Full=Acid sphingomyelinase-like phosphodiester... 199 3e-49
AK151683_1(AK151683|pid:none) Mus musculus bone marrow macrophag... 198 7e-49
(P70158) RecName: Full=Acid sphingomyelinase-like phosphodiester... 196 2e-48
(Q3ZC91) RecName: Full=Acid sphingomyelinase-like phosphodiester... 194 8e-48
AL845421_3(AL845421|pid:none) Zebrafish DNA sequence from clone ... 191 8e-47
BC091833_1(BC091833|pid:none) Danio rerio zgc:113352, mRNA (cDNA... 183 2e-44
BC091078_1(BC091078|pid:none) Xenopus tropicalis smpdl3a protein... 182 5e-44
BC149924_1(BC149924|pid:none) Bos taurus sphingomyelin phosphodi... 178 7e-43
(Q92485) RecName: Full=Acid sphingomyelinase-like phosphodiester... 175 6e-42
Y08134_1(Y08134|pid:none) H.sapiens mRNA for ASM-like phosphodie... 175 6e-42
AE014297_4777(AE014297|pid:none) Drosophila melanogaster chromos... 174 8e-42
AK301349_1(AK301349|pid:none) Homo sapiens cDNA FLJ56798 complet... 173 2e-41
AY071016_1(AY071016|pid:none) Drosophila melanogaster RE09471 fu... 172 5e-41
AM270218_67(AM270218|pid:none) Aspergillus niger contig An11c001... 165 6e-39
BC097983_1(BC097983|pid:none) Rattus norvegicus sphingomyelin ph... 163 2e-38
AK301365_1(AK301365|pid:none) Homo sapiens cDNA FLJ57626 complet... 161 9e-38
(P58242) RecName: Full=Acid sphingomyelinase-like phosphodiester... 160 2e-37
AP007157_821(AP007157|pid:none) Aspergillus oryzae RIB40 genomic... 155 7e-36
CR382127_500(CR382127|pid:none) Yarrowia lipolytica strain CLIB1... 145 7e-33
T34001(T34001)sphingomyelin phosphodiesterase (EC 3.1.4.12), aci... 142 4e-32
CR382131_1160(CR382131|pid:none) Yarrowia lipolytica strain CLIB... 139 4e-31
CR382131_1435(CR382131|pid:none) Yarrowia lipolytica strain CLIB... 135 7e-30
CR382131_1298(CR382131|pid:none) Yarrowia lipolytica strain CLIB... 127 1e-27
AE016816_115(AE016816|pid:none) Ashbya gossypii (= Eremothecium ... 126 3e-27
CR382132_523(CR382132|pid:none) Yarrowia lipolytica strain CLIB1... 123 2e-26
CR382128_474(CR382128|pid:none) Yarrowia lipolytica strain CLIB1... 119 3e-25
CR858837_1(CR858837|pid:none) Pongo abelii mRNA; cDNA DKFZp468E1... 118 7e-25
CR382129_319(CR382129|pid:none) Yarrowia lipolytica strain CLIB1... 118 9e-25
CU928179_302(CU928179|pid:none) Zygosaccharomyces rouxii strain ... 116 3e-24
AL512288_4(AL512288|pid:none) Human DNA sequence from clone RP11... 115 5e-24
CU640366_1235(CU640366|pid:none) Podospora anserina genomic DNA ... 111 9e-23
AE017353_254(AE017353|pid:none) Cryptococcus neoformans var. neo... 110 2e-22
Z70783_3(Z70783|pid:none) Caenorhabditis elegans Cosmid ZK856, c... 108 6e-22
AE014296_1859(AE014296|pid:none) Drosophila melanogaster chromos... 104 1e-20
FN357330_10(FN357330|pid:none) Schistosoma mansoni genome sequen... 103 2e-20
BX649605_26(BX649605|pid:none) Aspergillus fumigatus BAC pilot p... 103 2e-20
(Q55GC7) RecName: Full=Sphingomyelinase phosphodiesterase D; ... 100 2e-19
CP000499_616(CP000499|pid:none) Pichia stipitis CBS 6054 chromos... 97 2e-18
(Q6BKG0) RecName: Full=Endopolyphosphatase; EC=3.6.1.10... 96 5e-18
CP001160_390(CP001160|pid:none) Thalassiosira pseudonana CCMP133... 96 6e-18
AP007169_222(AP007169|pid:none) Aspergillus oryzae RIB40 genomic... 91 1e-16
AM920428_861(AM920428|pid:none) Penicillium chrysogenum Wisconsi... 91 1e-16
AM270165_123(AM270165|pid:none) Aspergillus niger contig An08c01... 90 3e-16
AK293566_1(AK293566|pid:none) Homo sapiens cDNA FLJ61214 complet... 90 3e-16
(Q756F2) RecName: Full=Endopolyphosphatase; EC=3.6.1.10... 89 8e-16
FM992692_53(FM992692|pid:none) Candida dubliniensis CD36 chromos... 86 7e-15
FM992691_83(FM992691|pid:none) Candida dubliniensis CD36 chromos... 85 9e-15
CU928171_188(CU928171|pid:none) Kluyveromyces thermotolerans str... 83 3e-14
CU914166_254(CU914166|pid:none) Ralstonia solanacearum strain IP... 83 4e-14
Y08136_1(Y08136|pid:none) H.sapiens mRNA for ASM-like phosphodie... 82 7e-14
CU694393_308(CU694393|pid:none) Ralstonia solanacearum strain Mo... 81 1e-13
AM494971_64(AM494971|pid:none) Leishmania braziliensis chromosom... 80 2e-13
CP000501_283(CP000501|pid:none) Pichia stipitis CBS 6054 chromos... 80 4e-13
AL646053_1610(AL646053|pid:none) Ralstonia solanacearum GMI1000 ... 78 1e-12
T50959(T50959)probable endopolyphosphatase (EC 3.6.1.10) B24P7.1... 77 2e-12
(Q6CWT7) RecName: Full=Endopolyphosphatase; EC=3.6.1.10... 75 1e-11
FM992694_93(FM992694|pid:none) Candida dubliniensis CD36 chromos... 74 2e-11
AP006852_95(AP006852|pid:none) Candida albicans genomic DNA, chr... 73 3e-11
CP000081_63(CP000081|pid:none) Leishmania major chromosome 35, c... 70 3e-10
(Q9P3S1) RecName: Full=Endopolyphosphatase; EC=3.6.1.10... 69 6e-10
CP001124_1464(CP001124|pid:none) Geobacter bemidjiensis Bem, com... 69 6e-10
FN392319_790(FN392319|pid:none) Pichia pastoris GS115 chromosome... 67 2e-09
AC103580_14(AC103580|pid:none) Trypanosoma brucei chromosome 4 c... 65 7e-09
AM502252_315(AM502252|pid:none) Leishmania infantum chromosome 34. 60 4e-07
AF325550_1(AF325550|pid:none) Bos taurus sphingomyelinase (ASM) ... 59 5e-07
AM494957_321(AM494957|pid:none) Leishmania braziliensis chromoso... 57 3e-06
CT005271_378(CT005271|pid:none) Leishmania major strain Friedlin... 57 3e-06
CP001472_2594(CP001472|pid:none) Acidobacterium capsulatum ATCC ... 55 7e-06
AF483036_1(AF483036|pid:none) Boltenia villosa acid sphingomyeli... 53 5e-05
AP010904_452(AP010904|pid:none) Desulfovibrio magneticus RS-1 DN... 53 5e-05
AP010904_1943(AP010904|pid:none) Desulfovibrio magneticus RS-1 D... 52 1e-04
U66367_1(U66367|pid:none) Dictyostelium discoideum SapA (sapA) m... 52 1e-04
CP000859_1740(CP000859|pid:none) Desulfococcus oleovorans Hxd3, ... 51 2e-04
M59917_1(M59917|pid:none) Human acid sphingomyelinase (ASM) gene... 49 5e-04
DQ062781_1(DQ062781|pid:none) Drosophila simulans saposin-relate... 48 0.001
BC149798_1(BC149798|pid:none) Bos taurus prosaposin-like 1, mRNA... 46 0.004
(P10960) RecName: Full=Sulfated glycoprotein 1; Short=S... 46 0.004
BC061759_1(BC061759|pid:none) Rattus norvegicus prosaposin, mRNA... 46 0.004
AK167719_1(AK167719|pid:none) Mus musculus 15 days pregnant adul... 46 0.006
(Q61207) RecName: Full=Sulfated glycoprotein 1; Short=S... 46 0.006
U57999_1(U57999|pid:none) Mus musculus prosaposin (psap\SGP-1) g... 46 0.006
AK159722_1(AK159722|pid:none) Mus musculus osteoclast-like cell ... 46 0.006
AK153404_1(AK153404|pid:none) Mus musculus bone marrow macrophag... 46 0.006
AK088369_1(AK088369|pid:none) Mus musculus 2 days neonate thymus... 46 0.006
AK149785_1(AK149785|pid:none) Mus musculus bone marrow macrophag... 46 0.006
AK152280_1(AK152280|pid:none) Mus musculus bone marrow macrophag... 46 0.006
AK167902_1(AK167902|pid:none) Mus musculus CRL-1722 L5178Y-R cDN... 46 0.006
AK159164_1(AK159164|pid:none) Mus musculus osteoclast-like cell ... 46 0.006
AK159634_1(AK159634|pid:none) Mus musculus osteoclast-like cell ... 46 0.006
AB170090_1(AB170090|pid:none) Macaca fascicularis brain cDNA clo... 45 0.010
CR456746_1(CR456746|pid:none) Homo sapiens full open reading fra... 45 0.010
AB170870_1(AB170870|pid:none) Macaca fascicularis brain cDNA clo... 45 0.010
AK167073_1(AK167073|pid:none) Mus musculus blastocyst blastocyst... 45 0.010
AB169527_1(AB169527|pid:none) Macaca fascicularis brain cDNA, cl... 45 0.010
AB209776_1(AB209776|pid:none) Homo sapiens mRNA for prosaposin v... 45 0.010
AK223290_1(AK223290|pid:none) Homo sapiens mRNA for prosaposin (... 45 0.010
CR861144_1(CR861144|pid:none) Pongo abelii mRNA; cDNA DKFZp459J1... 45 0.010
AF162129_1(AF162129|pid:none) Drosophila melanogaster ecdysone d... 45 0.010
M60258_1(M60258|pid:none) Human mutant cerebroside sulfate activ... 45 0.010
AX704807_1(AX704807|pid:none) Sequence 39 from Patent WO03014151. 45 0.010
(Q6IBQ6) RecName: Full=Proactivator polypeptide; Contains: Rec... 45 0.010
M60257_1(M60257|pid:none) Human mutant cerebroside sulfate activ... 45 0.010
AY892719_1(AY892719|pid:none) Synthetic construct Homo sapiens c... 45 0.010
S71616_1(S71616|pid:none) prosaposin [mice, mRNA, 2593 nt]. 44 0.017
CP001277_385(CP001277|pid:none) Candidatus Hamiltonella defensa ... 43 0.037
CR388420_1(CR388420|pid:none) Zebrafish DNA sequence from clone ... 42 0.11
AF108656_1(AF108656|pid:none) Gallus gallus prosaposin mRNA, com... 42 0.11
AK299184_1(AK299184|pid:none) Homo sapiens cDNA FLJ54136 complet... 42 0.11
BC056717_1(BC056717|pid:none) Danio rerio prosaposin, mRNA (cDNA... 42 0.11
(O13035) RecName: Full=Proactivator polypeptide; Contains: Rec... 42 0.11
AF276996_1(AF276996|pid:none) Danio rerio lysosomal cofactor/neu... 42 0.11
BC080997_1(BC080997|pid:none) Xenopus laevis MGC80725 protein, m... 41 0.18
EU441799_1(EU441799|pid:none) Xenopus borealis clone Psap.a3 pro... 40 0.24
AF175768_1(AF175768|pid:none) Dictyostelium discoideum SAPLIP C ... 40 0.24
BC105409_1(BC105409|pid:none) Bos taurus prosaposin, mRNA (cDNA ... 40 0.24
(Q9US39) RecName: Full=Uncharacterized protein C1039.02; Flags: ... 40 0.24
AC115608_3(AC115608|pid:none) Dictyostelium discoideum chromosom... 40 0.24
BC054988_1(BC054988|pid:none) Xenopus laevis hypothetical protei... 40 0.31
CR855698_1(CR855698|pid:none) Xenopus tropicalis finished cDNA, ... 40 0.41
CR859906_1(CR859906|pid:none) Pongo abelii mRNA; cDNA DKFZp468M2... 39 0.54
BT045905_1(BT045905|pid:none) Salmo salar clone ssal-rgf-536-147... 39 0.70
X57107_1(X57107|pid:none) Human gene for cerebroside sulfate act... 39 0.91
AF196309_1(AF196309|pid:none) Naegleria fowleri naegleriapore B ... 39 0.91
BC119540_1(BC119540|pid:none) Mus musculus prosaposin-like 1, mR... 38 1.2
AF196308_1(AF196308|pid:none) Naegleria fowleri naegleriapore A ... 38 1.2
(Q8C1C1) RecName: Full=Proactivator polypeptide-like 1; Contains... 38 1.2
DQ071890_1(DQ071890|pid:none) Trichomonas vaginalis saposin-like... 38 1.6
BT045327_1(BT045327|pid:none) Salmo salar clone ssal-rgf-518-210... 38 1.6
CP001614_289(CP001614|pid:none) Teredinibacter turnerae T7901, c... 38 1.6
AM743169_2507(AM743169|pid:none) Stenotrophomonas maltophilia K2... 38 1.6
CU928168_725(CU928168|pid:none) Kluyveromyces thermotolerans str... 38 1.6
DQ363441_1(DQ363441|pid:none) Ictalurus punctatus clone C111BF07... 37 2.0
F42074(F42074) hypothetical protein 3 (SMPD1 gene region) - huma... 37 2.0
BT042292_1(BT042292|pid:none) Zea mays full-length cDNA clone ZM... 37 2.0
(Q6NUJ1) RecName: Full=Proactivator polypeptide-like 1; Contains... 37 2.7
AB090278_1(AB090278|pid:none) Dugesia ryukyuensis Dryg mRNA for ... 37 2.7
(Q7T0Q0) RecName: Full=Magnesium-dependent ADP-ribose/CDP-alcoho... 37 2.7
BC068579_1(BC068579|pid:none) Homo sapiens prosaposin-like 1, mR... 37 2.7
(Q54ZW0) RecName: Full=Putative phagocytic receptor 1b; AltName:... 37 3.5
CR954203_404(CR954203|pid:none) Ostreococcus tauri strain OTTH05... 37 3.5
BT058972_1(BT058972|pid:none) Salmo salar clone ssal-rgf-517-167... 37 3.5
AB008449_1(AB008449|pid:none) Bombyx mori mRNA for BmP109, compl... 37 3.5
BC091483_1(BC091483|pid:none) Homo sapiens prosaposin, mRNA (cDN... 36 4.5
BX842652_286(BX842652|pid:none) Bdellovibrio bacteriovorus compl... 36 4.5
CR861454_1(CR861454|pid:none) Pongo abelii mRNA; cDNA DKFZp459G1... 36 4.5
CP000301_2458(CP000301|pid:none) Rhodopseudomonas palustris BisB... 36 4.5
AP010904_2998(AP010904|pid:none) Desulfovibrio magneticus RS-1 D... 36 4.5
X57108_1(X57108|pid:none) Human gene for cerebroside sulfate act... 36 4.5
DQ451028_1(DQ451028|pid:none) Pedetes capensis sphingomyelin pho... 36 4.5
DQ451031_1(DQ451031|pid:none) Ctenodactylus gundi sphingomyelin ... 36 4.5
DQ451032_1(DQ451032|pid:none) Thryonomys swinderianus sphingomye... 36 5.9
DQ321382_1(DQ321382|pid:none) Nannospalax ehrenbergi sphingomyel... 36 5.9
AJ618984_1(AJ618984|pid:none) Avian infectious bronchitis virus ... 36 5.9
DQ321380_1(DQ321380|pid:none) Cricetus cricetus sphingomyelin ph... 36 5.9
AF044587_1(AF044587|pid:none) Canis familiaris acid sphingomyeli... 36 5.9
AE014186_59(AE014186|pid:none) Plasmodium falciparum 3D7 chromos... 35 7.7
(Q66JJ3) RecName: Full=Manganese-dependent ADP-ribose/CDP-alcoho... 35 7.7

>AY261860_1(AY261860|pid:none) Ciona intestinalis sphingomyelin
phosphodiesterase 1 mRNA, partial cds.
Length = 599

Score = 280 bits (715), Expect = 2e-73
Identities = 177/553 (32%), Positives = 267/553 (48%), Gaps = 23/553 (4%)
Frame = +1

Query: 286 DKLDKAAATTLQHGENIQLS---CDVCQIGA-SLLEDFIKKNASLTEIIKGLSDLCIASK 453
D L+KA T Q + LS C C++ + L + N + + + LC K
Sbjct: 58 DALNKAPLFTKQFNKANPLSSLECTACKVALDAALWKYRTPNGTYPGLPGFIITLCKYLK 117

Query: 454 EEQPEVCTGILNNYVPIIVDVLIQSDFTPSQLCGYFKICXXXXXXXXXXXXXXFDNEYRQ 633
E VC G+++ + +L + T SQLCG D +
Sbjct: 118 IETNSVCEGMIHELQNETLFLLNKLQLTGSQLCGLI----------FPTSCPANDLSWNN 167

Query: 634 ESFNKPTMKVNKKPQYKDLSNQEPLVKKFKGNDSIGYILQISDVHFDPDYKVGSNPNCGR 813
+ P K +K N + L +LQISD+H D YK GS NC
Sbjct: 168 NKWVVPIPKPHKVKHRVSPKNSKELK-----------VLQISDIHIDLLYKPGSAANCKE 216

Query: 814 PLCCRDGVGSAGP----IGHY----LCDIPFSTVELIFQHLATLTDQLDFIVWTGDNPPH 969
PLCCRD G G G++ CD P+ T+E +FQ + D+ D+I+WTGD P H
Sbjct: 217 PLCCRDNNGEVGQDKVTAGYWGTAAACDTPYWTLENLFQRASE--DKFDYIIWTGDLPAH 274

Query: 970 NVWXXXXXXXXXXXXXXXXVIQKTFPNTPVLPSLGNHEAYPADQYV------LPNSQWLL 1131
N W ++ FPNTPV PSLGNHE+ P + + + N WL
Sbjct: 275 NDWSQTREGQIKLLSNLTNLLTHYFPNTPVYPSLGNHESNPVNSFPPNYVKGVNNISWLY 334

Query: 1132 DSIYTYWAPWLDADALELVKERGYYTSLIKPGLRVMSLNTLENDMINFYNLLPTYLKGPN 1311
+++ W+PWL DA+ V+E G+YT+L+KPGLR++S+N + NF+ LL PN
Sbjct: 335 EALAKAWSPWLPHDAITTVRESGFYTTLVKPGLRIVSMNMNYCNTENFWMLLDPV--DPN 392

Query: 1312 NQSDWMINTLEQAQSNGEKVLIIGHIPCTVKSASTDGWCAMYEQVVGQFSDVIIGQLYGH 1491
+ W++ TL+ A+ GE V IIGHIP ++ W Y ++ ++ D+I+ Q YGH
Sbjct: 393 GELAWLVKTLDGAEERGEVVHIIGHIPPSMTGDCLKVWRNNYHDIISRYRDIIMAQFYGH 452

Query: 1492 THYDQFSVFSDVATHTIPTGMNYIVPSLTTYQNHEPGYRIYQFDYSTNQIVNYYQYHANI 1671
TH D+ + + ++ P M YI PS+TTY P YR Y D ++ +++++ Y N+
Sbjct: 453 THKDEIEIQYNDSSLAHPVSMAYIAPSVTTYTKLFPSYRTYSMDGNSWRVLDHSTYTLNL 512

Query: 1672 TEANETGALN-FQLTYSAKELYNMDDLSPTSWTKVANQMKTNSTM---FNSYFENL-SSS 1836
TEAN GA ++L YSA+ YN+ L SW ++ +S F Y+ N +
Sbjct: 513 TEANTQGASPVWKLEYSARAEYNLTSLDLKSWHELYRSWVNDSDQSKTFQKYYTNFYKGN 572

Query: 1837 PIKESCDQACQTK 1875
P + CD+ C+ +
Sbjct: 573 PPNKECDRDCKMR 585

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 3,152,050,252
Number of extensions: 65132115
Number of successful extensions: 179404
Number of sequences better than 10.0: 177
Number of HSP's gapped: 178947
Number of HSP's successfully gapped: 254
Length of query: 658
Length of database: 1,051,180,864
Length adjustment: 135
Effective length of query: 523
Effective length of database: 614,245,399
Effective search space: 321250343677
Effective search space used: 321250343677
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.98 gvh: 0.53 alm: 0.17 top: 0.67 tms: 0.33 mit: 0.36 mip: 0.05
nuc: 0.11 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 1.00 m_ : 0.00

36.0 %: endoplasmic reticulum
28.0 %: plasma membrane
12.0 %: mitochondrial
8.0 %: vacuolar
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: nuclear
4.0 %: cytoplasmic

>> prediction for Contig-U13945-1 is end

VS (DIR, S) 0
VH (FL, L) 5
VF (FL, S) 3
AH (FL, L) 0
AF (FL, S) 2
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0