Contig-U13945-1 |
Contig ID |
Contig-U13945-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
no gap |
Contig length |
1974 |
Chromosome number (1..6, M) |
1 |
Chromosome length |
4919822 |
Start point |
4560070 |
End point |
4558085 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
11 |
Number of EST |
16 |
Link to clone list |
U13945 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.12.16 |
Homology vs DNA |
Query= Contig-U13945-1 (Contig-U13945-1Q) /CSM_Contig/Contig-U13945-1Q.Seq.d (1974 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ437348) Dictyostelium discoideum cDNA clone:ddv34a02, 3' ... 1493 0.0 2 (BJ438002) Dictyostelium discoideum cDNA clone:ddv36e05, 3' ... 1314 0.0 1 (BJ433894) Dictyostelium discoideum cDNA clone:ddv23c10, 3' ... 1298 0.0 2 (AU060621) Dictyostelium discoideum slug cDNA, clone SLK658. 1245 0.0 2 (BJ442360) Dictyostelium discoideum cDNA clone:ddv49k13, 3' ... 1205 0.0 2 (BJ440270) Dictyostelium discoideum cDNA clone:ddv43m06, 3' ... 1154 0.0 1 (BJ413362) Dictyostelium discoideum cDNA clone:ddv15b10, 5' ... 726 0.0 2 (BJ415652) Dictyostelium discoideum cDNA clone:ddv23c10, 5' ... 599 0.0 2 (BJ431835) Dictyostelium discoideum cDNA clone:ddv15b20, 3' ... 977 0.0 2 (BJ326578) Dictyostelium discoideum cDNA clone:dda17e04, 5' ... 892 0.0 2 (BJ421587) Dictyostelium discoideum cDNA clone:ddv43m06, 5' ... 884 0.0 2 (BJ419418) Dictyostelium discoideum cDNA clone:ddv36e05, 5' ... 884 0.0 2 (BJ328487) Dictyostelium discoideum cDNA clone:dda28j11, 5' ... 500 0.0 3 (BJ417841) Dictyostelium discoideum cDNA clone:ddv15b20, 5' ... 547 e-151 1 (C83986) Dictyostelium discoideum slug cDNA, clone SLK658. 168 9e-88 4 (BJ440265) Dictyostelium discoideum cDNA clone:ddv43l06, 3' ... 329 2e-85 1 (BJ364121) Dictyostelium discoideum cDNA clone:ddc30f01, 5' ... 52 1e-04 3 (AC115592) Dictyostelium discoideum chromosome 2 map 1-12595... 34 0.21 10 (CG755729) P051-1-H10.yc Ppa EcoRI BAC Library Pristionchus ... 48 1.3 1 (CG755728) P051-1-H10.yb Ppa EcoRI BAC Library Pristionchus ... 48 1.3 1 (AC152547) Xenopus tropicalis clone CH216-1M22, WORKING DRAF... 40 1.9 5 (AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 32 3.4 14 (U60086) Dictyostelium discoideum multidrug resistance trans... 34 4.2 5 (AM457192) Vitis vinifera, whole genome shotgun sequence, co... 46 5.1 1 (AC160924) Medicago truncatula chromosome 7 clone mte1-74g1,... 46 5.1 1 (AC148764) Medicago truncatula clone mth2-30o12, complete se... 46 5.1 1 (AR318817) Sequence 1367 from patent US 6562958. 46 5.1 1 (CU694299) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 5.1 1 (FI153103) SGS5776 Sugarcane cv. Co7201 size fractionated ge... 46 5.1 1 (EJ986963) 1093023017373 Global-Ocean-Sampling_GS-30-02-01-1... 46 5.1 1 (EJ855470) 1093017915701 Global-Ocean-Sampling_GS-30-02-01-1... 46 5.1 1 (EJ737608) 1092961208675 Global-Ocean-Sampling_GS-30-02-01-1... 46 5.1 1 (DX464742) Cpl06558 Papaya Genomic DNA BAC Library Carica pa... 46 5.1 1 (CL027848) CH216-26L8_RM1.1 CH216 Xenopus (Silurana) tropica... 46 5.1 1 (AM858925) Crassostrea gigas EST, 5' end sequence, clone cdn... 46 5.1 1 (CX895302) JGI_CAAM6312.rev NIH_XGC_tropTe3 Xenopus (Siluran... 46 5.1 1 (BI514779) BB160016A20G02.5 Bee Brain Normalized Library, BB... 46 5.1 1 (CU468230) Acinetobacter baumannii str. SDF, complete genome. 46 5.1 1 (CU459141) Acinetobacter baumannii str. AYE, complete genome. 46 5.1 1 (CP000863) Acinetobacter baumannii ACICU, complete genome. 46 5.1 1 (CP000847) Rickettsia akari str. Hartford, complete genome. 46 5.1 1 (CP000521) Acinetobacter baumannii ATCC 17978, complete genome. 46 5.1 1 (CZ931193) 249077 Tomato EcoRI BAC Library Solanum lycopersi... 40 9.8 2
>(BJ437348) Dictyostelium discoideum cDNA clone:ddv34a02, 3' end, single read. Length = 778
Score = 1493 bits (753), Expect(2) = 0.0 Identities = 753/753 (100%) Strand = Plus / Minus
Query: 1127 tattggactcgatttacacctattgggcaccatggttagatgccgatgctttggagttgg 1186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 778 tattggactcgatttacacctattgggcaccatggttagatgccgatgctttggagttgg 719
Query: 1187 ttaaagagcgtggttattatacatcgttgattaagccaggtcttcgtgttatgtcattga 1246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 718 ttaaagagcgtggttattatacatcgttgattaagccaggtcttcgtgttatgtcattga 659
Query: 1247 atactttggagaatgatatgatcaatttctataatctcctcccaacctatttaaaaggcc 1306 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 658 atactttggagaatgatatgatcaatttctataatctcctcccaacctatttaaaaggcc 599
Query: 1307 caaataatcaatcggattggatgatcaatacattggaacaagctcaatccaatggtgaaa 1366 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 598 caaataatcaatcggattggatgatcaatacattggaacaagctcaatccaatggtgaaa 539
Query: 1367 aggttttaatcattggtcatattccatgcactgttaaaagtgcttcaaccgatggttggt 1426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 538 aggttttaatcattggtcatattccatgcactgttaaaagtgcttcaaccgatggttggt 479
Query: 1427 gtgcaatgtatgaacaagtggtaggtcaattctctgatgttatcattggtcaattgtatg 1486 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 478 gtgcaatgtatgaacaagtggtaggtcaattctctgatgttatcattggtcaattgtatg 419
Query: 1487 gccatactcattacgatcaattttcagtattctccgatgttgcaactcatacaattccaa 1546 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 418 gccatactcattacgatcaattttcagtattctccgatgttgcaactcatacaattccaa 359
Query: 1547 ccggtatgaattatatcgttccatcattaacaacctatcaaaatcatgaacctggttatc 1606 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 358 ccggtatgaattatatcgttccatcattaacaacctatcaaaatcatgaacctggttatc 299
Query: 1607 gtatttatcaatttgattattcaactaatcaaattgtaaactactatcaatatcatgcaa 1666 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 298 gtatttatcaatttgattattcaactaatcaaattgtaaactactatcaatatcatgcaa 239
Query: 1667 acattactgaagcaaatgaaactggtgccttaaatttccaattgacttatagtgctaaag 1726 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 238 acattactgaagcaaatgaaactggtgccttaaatttccaattgacttatagtgctaaag 179
Query: 1727 aactctataatatggatgatctttcacctacctcttggacaaaagttgccaatcaaatga 1786 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 178 aactctataatatggatgatctttcacctacctcttggacaaaagttgccaatcaaatga 119
Query: 1787 aaactaattcaacaatgtttaatagttatttcgaaaatcttagtagttcaccaattaaag 1846 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 118 aaactaattcaacaatgtttaatagttatttcgaaaatcttagtagttcaccaattaaag 59
Query: 1847 aatcttgtgatcaagcttgtcaaactaaaggat 1879 ||||||||||||||||||||||||||||||||| Sbjct: 58 aatcttgtgatcaagcttgtcaaactaaaggat 26
Score = 28.2 bits (14), Expect(2) = 0.0 Identities = 14/14 (100%) Strand = Plus / Minus
Query: 1889 ctttggtatcactt 1902 |||||||||||||| Sbjct: 14 ctttggtatcactt 1
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 2,105,697,629 Number of extensions: 122104984 Number of successful extensions: 10761701 Number of sequences better than 10.0: 44 Length of query: 1974 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1950 Effective length of database: 97,308,875,965 Effective search space: 189752308131750 Effective search space used: 189752308131750 X1: 11 (21.8 bits) S2: 23 (46.1 bits)
|
protein update |
2009. 7.10 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
5 |
VF (FL, S) |
3 |
AH (FL, L) |
0 |
AF (FL, S) |
2 |
SL (DIR, L) |
1 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |