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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U13922-1
Contig ID Contig-U13922-1
Contig update 2002.12.18
Contig sequence 
>Contig-U13922-1 (Contig-U13922-1Q) /CSM_Contig/Contig-U13922-1Q.Seq.d
ATTTTTAAATTTTTATACAACCAAAACTATATAAATAAATATATATAAAT
ATAATTACAATTTAAAATGTACTCACCAGAAGATTTAGAATATAGAGAAC
AACAACGTTTAAGTAAAGCATTACAAGGTAAATTAGGTGGTGCAAGCTCA
AGAAAATCATGGGCACCAGTTGTAACAGGTAAACCACAAACACATAGTGC
ACCAGTTAATAGTTCATTTGCATCAATTTCAATTTCAGATAAGCACCACG
AATCACCATCAACAACAACATCATCACCATCAACATCATCAGGTGTTGAT
AATAGTTCAATCTATCCAGGTGCAATCGTTGAGGATAAAGTTAAATCACA
AGAAGCACACCGTTTGAAAAAGATGGGTCTTTCAACTGAAGAAGATGAAT
CAACCGCTCATATTCCAGCATATACTTCATTAAATTCATCATCCTCATCC
ACCATCTCAAAGAGTAATAGCAATCAAAGCCTTGCAAAGGAAACCAGTAG
TAACAACCTCTTGCAATATCAATCACCAGTTAGAGTAGCCAGCTCAACAT
CATCTGAGAATTTAGTCGATAGTGCTTCCATTATGAACAACGTTGATTCT
CATACCTCTGAAGAGAAAATGAAGCAAGAGGCAAAGAGATTAGAAAGATG
GGGTTTAAAGATTAACTCACCAACTGCTACCTCACCAAGCACTACCTCAC
CACCAGTCTCTAGTACCACTCCGGTTGCACCAGTGACTCCAACCGAACAA
TCTGTACCACAATCTCCATTCTCAACTGGTGCTGCCGTCTCTGTCAATCA
AAGTCATAGCAATCTCCCAATCGCTACTACCCAACAATTCCTTGATCGTA
TCGTTCTCTCTGCTAAATCCGTTAAACAAATCATTCAAAAGAAAACCTCT
AATCGTGATATTGTCATCTCTATTCTCATGGATTTAGTAAAGGAATCTGC
AAACTTTGGTATGACTCTCTCTTCAACTACCCCAATGTCTTTCGATATCT
CTCAAAATGCTGGTAAACTCGCTGGTGCTGTCAATGAATTAGTTAAAGAC
ACTGCTCACGAAAATAATAAAATCTTTGATGAAATTCAAGTACTCTTAGG
TTTATTATATTTAGCTGTTGTTGCTAATTAGAGAAAAAAAAAAAAAAAAA
AAAAAAAAAAATAATAAAAATAATAAAAATAAAAACCATTAAAAATTTGT
AAATTAAAAAAAAAAA
Gap no gap
Contig length 1216
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 1136506
End point 1137722
Strand (PLUS/MINUS) PLUS
Number of clones 23
Number of EST 27
Link to clone list U13922
List of clone(s) 

est1=SLD713F,-38,63
est2=SFC268E,-19,1105
est3=SFG704E,4,1074
est4=AFF249F,8,512
est5=CFA872E,40,1097
est6=CHC851F,45,607
est7=CHD103F,45,236
est8=AFO548Z,362,977
est9=CFB439Z,389,951
est10=VFM511Z,402,979
est11=VFL163Z,413,1001
est12=CHD103Z,415,1025
est13=SSC534Z,426,1137
est14=SSC538Z,429,1141
est15=CFB563Z,466,1022
est16=SLA529F,494,1164
est17=SLC832Z,506,1144
est18=AFF249Z,508,1073
est19=SLI758Z,600,1135
est20=SSG310F,617,1076
est21=SSH396Z,664,1136
est22=AFN607Z,701,947
est23=SSB757Z,830,1152
est24=SFE377Z,865,976
est25=SSG310Z,870,1217
est26=SLD713Z,911,1133
est27=SSE278E,921,1215
Translated Amino Acid sequence 
ifkflynqnyinkyi*i*LQFKMYSPEDLEYREQQRLSKALQGKLGGASSRKSWAPVVTG
KPQTHSAPVNSSFASISISDKHHESPSTTTSSPSTSSGVDNSSIYPGAIVEDKVKSQEAH
RLKKMGLSTEEDESTAHIPAYTSLNSSSSSTISKSNSNQSLAKETSSNNLLQYQSPVRVA
SSTSSENLVDSASIMNNVDSHTSEEKMKQEAKRLERWGLKINSPTATSPSTTSPPVSSTT
PVAPVTPTEQSVPQSPFSTGAAVSVNQSHSNLPIATTQQFLDRIVLSAKSVKQIIQKKTS
NRDIVISILMDLVKESANFGMTLSSTTPMSFDISQNAGKLAGAVNELVKDTAHENNKIFD
EIQVLLGLLYLAVVAN*rkkkkkkkkk**k**k*kplkicklkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
ifkflynqnyinkyi*i*LQFKMYSPEDLEYREQQRLSKALQGKLGGASSRKSWAPVVTG
KPQTHSAPVNSSFASISISDKHHESPSTTTSSPSTSSGVDNSSIYPGAIVEDKVKSQEAH
RLKKMGLSTEEDESTAHIPAYTSLNSSSSSTISKSNSNQSLAKETSSNNLLQYQSPVRVA
SSTSSENLVDSASIMNNVDSHTSEEKMKQEAKRLERWGLKINSPTATSPSTTSPPVSSTT
PVAPVTPTEQSVPQSPFSTGAAVSVNQSHSNLPIATTQQFLDRIVLSAKSVKQIIQKKTS
NRDIVISILMDLVKESANFGMTLSSTTPMSFDISQNAGKLAGAVNELVKDTAHENNKIFD
EIQVLLGLLYLAVVAN*rkkkkkkkkk**k**k*kplkicklkkk


Frame B:
flnfyttkti*iniykynynlkcthqki*niennnv*vkhykvn*vvqaqenhghql*qv
nhkhivhqlivhlhqfqfqisttnhhqqqhhhhqhhqvliivqsiqvqslriklnhkkht
v*krwvfqlkkmnqplifqhilh*ihhphppsqrviaikalqrkpvvttscninhqle*p
aqhhlri*sivlpl*ttliliplkrk*skrqrd*kdgv*rlthqllphqalphhqslvpl
rlhq*lqpnnlyhnlhsqlvlpslsikviaisqsllpnnslivsfsllnplnksfkrkpl
ivilsslfswi**rnlqtlv*lslqlpqclsislkmlvnslvlsmn*lktlltkiikslm
kfkys*vyyi*llllirekkkkkkkknnknnknknh*kfvn*kkk


Frame C:
f*ifiqpklyk*iyiniiti*nvltrrfri*rtttfk*sitr*irwcklkkimgtscnr*
ttnt*cts**ficinfnfr*apritinnniitiniirc***fnlsrcnr*g*s*itrstp
fekdgsfn*rr*inrsyssiyfikfiilihhlke**qskpckgnq**qplaisits*ssq
lnii*efsr*cfhyeqr*fsyl*reneargkeirkmgfkd*ltncyltkhylttsl*yhs
gctsdsnrticttisilnwccrlcqsks*qspnryyptip*syrslc*ir*tnhskenl*
s*ychlyshgfskgicklwydslfnypnvfrylskcw*trwccq*is*rhcsrk**nl**
nsstlrfiifsccc*lekkkkkkkkkiikiikiktiknl*ikkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U13922-1 (Contig-U13922-1Q)
/CSM_Contig/Contig-U13922-1Q.Seq.d
         (1216 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13922-1 (Contig-U13922-1Q) /CSM_Contig/Conti...  2141  0.0
Contig-U09872-1 (Contig-U09872-1Q) /CSM_Contig/Conti...    48  2e-05
Contig-U07546-1 (Contig-U07546-1Q) /CSM_Contig/Conti...    48  2e-05
Contig-U11931-1 (Contig-U11931-1Q) /CSM_Contig/Conti...    46  9e-05
Contig-U13531-1 (Contig-U13531-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U12522-1 (Contig-U12522-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U10756-1 (Contig-U10756-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U14875-1 (Contig-U14875-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U12755-1 (Contig-U12755-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U11988-1 (Contig-U11988-1Q) /CSM_Contig/Conti...    42  0.001

>Contig-U13922-1 (Contig-U13922-1Q) /CSM_Contig/Contig-U13922-1Q.Seq.d
          Length = 1216

 Score = 2141 bits (1080), Expect = 0.0
 Identities = 1080/1080 (100%)
 Strand = Plus / Plus

                                                                        
Query: 54   attacaatttaaaatgtactcaccagaagatttagaatatagagaacaacaacgtttaag 113
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54   attacaatttaaaatgtactcaccagaagatttagaatatagagaacaacaacgtttaag 113

                                                                        
Query: 114  taaagcattacaaggtaaattaggtggtgcaagctcaagaaaatcatgggcaccagttgt 173
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114  taaagcattacaaggtaaattaggtggtgcaagctcaagaaaatcatgggcaccagttgt 173

                                                                        
Query: 174  aacaggtaaaccacaaacacatagtgcaccagttaatagttcatttgcatcaatttcaat 233
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174  aacaggtaaaccacaaacacatagtgcaccagttaatagttcatttgcatcaatttcaat 233

                                                                        
Query: 234  ttcagataagcaccacgaatcaccatcaacaacaacatcatcaccatcaacatcatcagg 293
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234  ttcagataagcaccacgaatcaccatcaacaacaacatcatcaccatcaacatcatcagg 293

                                                                        
Query: 294  tgttgataatagttcaatctatccaggtgcaatcgttgaggataaagttaaatcacaaga 353
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294  tgttgataatagttcaatctatccaggtgcaatcgttgaggataaagttaaatcacaaga 353

                                                                        
Query: 354  agcacaccgtttgaaaaagatgggtctttcaactgaagaagatgaatcaaccgctcatat 413
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354  agcacaccgtttgaaaaagatgggtctttcaactgaagaagatgaatcaaccgctcatat 413

                                                                        
Query: 414  tccagcatatacttcattaaattcatcatcctcatccaccatctcaaagagtaatagcaa 473
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414  tccagcatatacttcattaaattcatcatcctcatccaccatctcaaagagtaatagcaa 473

                                                                        
Query: 474  tcaaagccttgcaaaggaaaccagtagtaacaacctcttgcaatatcaatcaccagttag 533
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474  tcaaagccttgcaaaggaaaccagtagtaacaacctcttgcaatatcaatcaccagttag 533

                                                                        
Query: 534  agtagccagctcaacatcatctgagaatttagtcgatagtgcttccattatgaacaacgt 593
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534  agtagccagctcaacatcatctgagaatttagtcgatagtgcttccattatgaacaacgt 593

                                                                        
Query: 594  tgattctcatacctctgaagagaaaatgaagcaagaggcaaagagattagaaagatgggg 653
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594  tgattctcatacctctgaagagaaaatgaagcaagaggcaaagagattagaaagatgggg 653

                                                                        
Query: 654  tttaaagattaactcaccaactgctacctcaccaagcactacctcaccaccagtctctag 713
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654  tttaaagattaactcaccaactgctacctcaccaagcactacctcaccaccagtctctag 713

                                                                        
Query: 714  taccactccggttgcaccagtgactccaaccgaacaatctgtaccacaatctccattctc 773
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714  taccactccggttgcaccagtgactccaaccgaacaatctgtaccacaatctccattctc 773

                                                                        
Query: 774  aactggtgctgccgtctctgtcaatcaaagtcatagcaatctcccaatcgctactaccca 833
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774  aactggtgctgccgtctctgtcaatcaaagtcatagcaatctcccaatcgctactaccca 833

                                                                        
Query: 834  acaattccttgatcgtatcgttctctctgctaaatccgttaaacaaatcattcaaaagaa 893
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834  acaattccttgatcgtatcgttctctctgctaaatccgttaaacaaatcattcaaaagaa 893

                                                                        
Query: 894  aacctctaatcgtgatattgtcatctctattctcatggatttagtaaaggaatctgcaaa 953
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894  aacctctaatcgtgatattgtcatctctattctcatggatttagtaaaggaatctgcaaa 953

                                                                        
Query: 954  ctttggtatgactctctcttcaactaccccaatgtctttcgatatctctcaaaatgctgg 1013
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 954  ctttggtatgactctctcttcaactaccccaatgtctttcgatatctctcaaaatgctgg 1013

                                                                        
Query: 1014 taaactcgctggtgctgtcaatgaattagttaaagacactgctcacgaaaataataaaat 1073
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1014 taaactcgctggtgctgtcaatgaattagttaaagacactgctcacgaaaataataaaat 1073

                                                                        
Query: 1074 ctttgatgaaattcaagtactcttaggtttattatatttagctgttgttgctaattagag 1133
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1074 ctttgatgaaattcaagtactcttaggtttattatatttagctgttgttgctaattagag 1133


 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 1  atttttaaatttttatacaaccaaaac 27
          |||||||||||||||||||||||||||
Sbjct: 1  atttttaaatttttatacaaccaaaac 27


>Contig-U09872-1 (Contig-U09872-1Q) /CSM_Contig/Contig-U09872-1Q.Seq.d
          Length = 1623

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                        
Query: 257  catcaacaacaacatcatcaccatcaac 284
            |||||||||| |||||||||||||||||
Sbjct: 1262 catcaacaaccacatcatcaccatcaac 1289


>Contig-U07546-1 (Contig-U07546-1Q) /CSM_Contig/Contig-U07546-1Q.Seq.d
          Length = 1050

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 260 caacaacaacatcatcaccatcaacatcatca 291
           ||||||||||||||||| ||||| ||||||||
Sbjct: 20  caacaacaacatcatcatcatcatcatcatca 51


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,152
Number of Sequences: 6905
Number of extensions: 20152
Number of successful extensions: 2715
Number of sequences better than 10.0: 381
length of query: 1216
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1200
effective length of database: 5,564,391
effective search space: 6677269200
effective search space used: 6677269200
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.15
Homology vs DNA 
Query= Contig-U13922-1 (Contig-U13922-1Q) /CSM_Contig/Contig-U13922-1Q.Seq.d
         (1216 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AF222688) Dictyostelium discoideum dynacortin (dct) mRNA, c...  1667   0.0    3
(BJ373316) Dictyostelium discoideum cDNA clone:ddc2p18, 3' e...  1445   0.0    1
(C84047) Dictyostelium discoideum slug cDNA, clone SSC538.       1398   0.0    1
(C84045) Dictyostelium discoideum slug cDNA, clone SSC534.       1398   0.0    1
(BJ399351) Dictyostelium discoideum cDNA clone:dds5g18, 3' e...  1334   0.0    2
(AU060182) Dictyostelium discoideum slug cDNA, clone SLA529.     1261   0.0    1
(AU034407) Dictyostelium discoideum slug cDNA, clone SLC832.     1245   0.0    1
(BJ346287) Dictyostelium discoideum cDNA clone:dda30o11, 3' ...  1213   0.0    1
(BJ376320) Dictyostelium discoideum cDNA clone:ddc28e01, 3' ...  1181   0.0    1
(BJ400628) Dictyostelium discoideum cDNA clone:dds14h01, 3' ...  1178   0.0    1
(BJ434025) Dictyostelium discoideum cDNA clone:ddv23m15, 3' ...  1160   0.0    1
(BJ435092) Dictyostelium discoideum cDNA clone:ddv26e03, 3' ...  1142   0.0    1
(BJ373520) Dictyostelium discoideum cDNA clone:ddc3n10, 3' e...  1116   0.0    1
(BJ340061) Dictyostelium discoideum cDNA clone:dda11a14, 3' ...  1102   0.0    1
(AU053491) Dictyostelium discoideum slug cDNA, clone SLI758.     1051   0.0    1
(BJ373714) Dictyostelium discoideum cDNA clone:ddc4m15, 3' e...  1039   0.0    1
(BJ359822) Dictyostelium discoideum cDNA clone:ddc2p18, 5' e...   733   0.0    2
(BJ390882) Dictyostelium discoideum cDNA clone:dds14h01, 5' ...   630   0.0    3
(BJ363614) Dictyostelium discoideum cDNA clone:ddc27f14, 5' ...   626   0.0    2
(AU038195) Dictyostelium discoideum slug cDNA, clone SSH396.      854   0.0    2
(BJ387876) Dictyostelium discoideum cDNA clone:dds5g18, 5' e...   492   0.0    3
(BJ323632) Dictyostelium discoideum cDNA clone:dda11a14, 5' ...   438   0.0    3
(AU037315) Dictyostelium discoideum slug cDNA, clone SSB757.      537   e-148  1
(C94037) Dictyostelium discoideum slug cDNA, clone SSG310.        525   e-144  1
(AU073171) Dictyostelium discoideum slug cDNA, clone SSG310.      476   e-129  1
(AU052665) Dictyostelium discoideum slug cDNA, clone SLD713.      442   e-119  1
(AU037774) Dictyostelium discoideum slug cDNA, clone SSE278.      420   e-113  1
(BJ345592) Dictyostelium discoideum cDNA clone:dda28m02, 3' ...   363   e-101  2
(BJ363704) Dictyostelium discoideum cDNA clone:ddc28e01, 5' ...   331   4e-86  1
(BJ400348) Dictyostelium discoideum cDNA clone:dds9j19, 3' e...   170   8e-38  1
(BJ346942) Dictyostelium discoideum cDNA clone:dda25j18, 3' ...   133   1e-36  2
(AU061301) Dictyostelium discoideum slug cDNA, clone SLD713.       54   0.013  1
(DQ890022) Paramecium bursaria Chlorella virus FR483, comple...    46   3.1    1
(AC122688) Homo sapiens 12 BAC RP11-158L12 (Roswell Park Can...    46   3.1    1
(EJ762245) 1092963145708 Global-Ocean-Sampling_GS-30-02-01-1...    46   3.1    1
(BU350065) 603527465F1 CSEQCHN69 Gallus gallus cDNA clone Ch...    46   3.1    1
(CP001130) Hydrogenobaculum sp. Y04AAS1, complete genome.          46   3.1    1
(AC173716) Strongylocentrotus purpuratus clone R3-43N7, WORK...    44   4.1    4
(AC149514) Xenopus tropicalis clone CH216-32H13, complete se...    40   4.8    4
(EJ462426) 1093023003337 Global-Ocean-Sampling_GS-28-01-01-1...    34   7.8    2
(ET975037) CHO_OF680xn07f1.ab1 CHO_OF Nicotiana tabacum geno...    40   9.2    2

>(AF222688) Dictyostelium discoideum dynacortin (dct) mRNA, complete
            cds.
          Length = 1177

 Score = 1667 bits (841), Expect(3) = 0.0
 Identities = 841/841 (100%)
 Strand = Plus / Plus


Query: 292  ggtgttgataatagttcaatctatccaggtgcaatcgttgaggataaagttaaatcacaa 351
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321  ggtgttgataatagttcaatctatccaggtgcaatcgttgaggataaagttaaatcacaa 380


Query: 352  gaagcacaccgtttgaaaaagatgggtctttcaactgaagaagatgaatcaaccgctcat 411
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381  gaagcacaccgtttgaaaaagatgggtctttcaactgaagaagatgaatcaaccgctcat 440


Query: 412  attccagcatatacttcattaaattcatcatcctcatccaccatctcaaagagtaatagc 471
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441  attccagcatatacttcattaaattcatcatcctcatccaccatctcaaagagtaatagc 500


Query: 472  aatcaaagccttgcaaaggaaaccagtagtaacaacctcttgcaatatcaatcaccagtt 531
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501  aatcaaagccttgcaaaggaaaccagtagtaacaacctcttgcaatatcaatcaccagtt 560


Query: 532  agagtagccagctcaacatcatctgagaatttagtcgatagtgcttccattatgaacaac 591
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561  agagtagccagctcaacatcatctgagaatttagtcgatagtgcttccattatgaacaac 620


Query: 592  gttgattctcatacctctgaagagaaaatgaagcaagaggcaaagagattagaaagatgg 651
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621  gttgattctcatacctctgaagagaaaatgaagcaagaggcaaagagattagaaagatgg 680


Query: 652  ggtttaaagattaactcaccaactgctacctcaccaagcactacctcaccaccagtctct 711
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681  ggtttaaagattaactcaccaactgctacctcaccaagcactacctcaccaccagtctct 740


Query: 712  agtaccactccggttgcaccagtgactccaaccgaacaatctgtaccacaatctccattc 771
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741  agtaccactccggttgcaccagtgactccaaccgaacaatctgtaccacaatctccattc 800


Query: 772  tcaactggtgctgccgtctctgtcaatcaaagtcatagcaatctcccaatcgctactacc 831
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801  tcaactggtgctgccgtctctgtcaatcaaagtcatagcaatctcccaatcgctactacc 860


Query: 832  caacaattccttgatcgtatcgttctctctgctaaatccgttaaacaaatcattcaaaag 891
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861  caacaattccttgatcgtatcgttctctctgctaaatccgttaaacaaatcattcaaaag 920


Query: 892  aaaacctctaatcgtgatattgtcatctctattctcatggatttagtaaaggaatctgca 951
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921  aaaacctctaatcgtgatattgtcatctctattctcatggatttagtaaaggaatctgca 980


Query: 952  aactttggtatgactctctcttcaactaccccaatgtctttcgatatctctcaaaatgct 1011
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981  aactttggtatgactctctcttcaactaccccaatgtctttcgatatctctcaaaatgct 1040


Query: 1012 ggtaaactcgctggtgctgtcaatgaattagttaaagacactgctcacgaaaataataaa 1071
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1041 ggtaaactcgctggtgctgtcaatgaattagttaaagacactgctcacgaaaataataaa 1100


Query: 1072 atctttgatgaaattcaagtactcttaggtttattatatttagctgttgttgctaattag 1131
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1101 atctttgatgaaattcaagtactcttaggtttattatatttagctgttgttgctaattag 1160


Query: 1132 a 1132
            |
Sbjct: 1161 a 1161

 Score =  389 bits (196), Expect(3) = 0.0
 Identities = 196/196 (100%)
 Strand = Plus / Plus


Query: 56  tacaatttaaaatgtactcaccagaagatttagaatatagagaacaacaacgtttaagta 115
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85  tacaatttaaaatgtactcaccagaagatttagaatatagagaacaacaacgtttaagta 144


Query: 116 aagcattacaaggtaaattaggtggtgcaagctcaagaaaatcatgggcaccagttgtaa 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 aagcattacaaggtaaattaggtggtgcaagctcaagaaaatcatgggcaccagttgtaa 204


Query: 176 caggtaaaccacaaacacatagtgcaccagttaatagttcatttgcatcaatttcaattt 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 caggtaaaccacaaacacatagtgcaccagttaatagttcatttgcatcaatttcaattt 264


Query: 236 cagataagcaccacga 251
           ||||||||||||||||
Sbjct: 265 cagataagcaccacga 280

 Score = 36.2 bits (18), Expect(3) = 0.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus


Query: 10 tttttatacaaccaaaac 27
          ||||||||||||||||||
Sbjct: 39 tttttatacaaccaaaac 56

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,177,633,611
Number of extensions: 69335270
Number of successful extensions: 5726116
Number of sequences better than 10.0: 41
Length of query: 1216
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1192
Effective length of database: 97,308,875,965
Effective search space: 115992180150280
Effective search space used: 115992180150280
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 8
Homology vs Protein 
Query= Contig-U13922-1 (Contig-U13922-1Q) /CSM_Contig/Contig-U13922-1Q.Seq.d
         (1216 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF222688_1(AF222688|pid:none) Dictyostelium discoideum dynacorti...   527   e-148
CP000090_1303(CP000090|pid:none) Ralstonia eutropha JMP134 chrom...    37   1.9
CP001408_431(CP001408|pid:none) Burkholderia pseudomallei MSHR34...    36   3.2
FM992688_1247(FM992688|pid:none) Candida dubliniensis CD36 chrom...    35   7.1
EU565733_1(EU565733|pid:none) Uncultured soil bacterium clone gl...    35   7.1
CP000010_2763(CP000010|pid:none) Burkholderia mallei ATCC 23344 ...    34   9.2
CP000526_104(CP000526|pid:none) Burkholderia mallei SAVP1 chromo...    34   9.2

>AF222688_1(AF222688|pid:none) Dictyostelium discoideum dynacortin
            (dct) mRNA, complete cds.
          Length = 354

 Score =  527 bits (1358), Expect = e-148
 Identities = 284/341 (83%), Positives = 284/341 (83%)
 Frame = +1

Query: 67   MYSPEDLEYREQQRLSKALQGKLGGASSRKSWAPVVTGKPQTHSAPVNSSFASISISDKH 246
            MYSPEDLEYREQQRLSKALQGKLGGASSRKSWAPVVTGKPQTHSAPVNSSFASISISDKH
Sbjct: 1    MYSPEDLEYREQQRLSKALQGKLGGASSRKSWAPVVTGKPQTHSAPVNSSFASISISDKH 60

Query: 247  HEXXXXXXXXXXXXXGVDNSSIYPGAIVEDKVKSQEAHRLKKMGLSTEEDESTAHIPAYT 426
            HE             GVDNSSIYPGAIVEDKVKSQEAHRLKKMGLSTEEDESTAHIPAYT
Sbjct: 61   HESPSTTTSSPSTSSGVDNSSIYPGAIVEDKVKSQEAHRLKKMGLSTEEDESTAHIPAYT 120

Query: 427  XXXXXXXXXXXXXXXXXXLAKETSSNNLLQYQSPVRVASSTSSENLVDSASIMNNVDSHT 606
                              LAKETSSNNLLQYQSPVRVASSTSSENLVDSASIMNNVDSHT
Sbjct: 121  SLNSSSSSTISKSNSNQSLAKETSSNNLLQYQSPVRVASSTSSENLVDSASIMNNVDSHT 180

Query: 607  SEEKMKQEAKRLERWGLKINXXXXXXXXXXXXXXXXXXXXXXXXXXEQSVPQSPFSTGAA 786
            SEEKMKQEAKRLERWGLKIN                          EQSVPQSPFSTGAA
Sbjct: 181  SEEKMKQEAKRLERWGLKINSPTATSPSTTSPPVSSTTPVAPVTPTEQSVPQSPFSTGAA 240

Query: 787  VSVNQSHSNLPIATTQQFLDRIVLSAKSVKQIIQKKTSNRDIVISILMDLVKESANFGMT 966
            VSVNQSHSNLPIATTQQFLDRIVLSAKSVKQIIQKKTSNRDIVISILMDLVKESANFGMT
Sbjct: 241  VSVNQSHSNLPIATTQQFLDRIVLSAKSVKQIIQKKTSNRDIVISILMDLVKESANFGMT 300

Query: 967  LSSTTPMSFDISQNAGKLAGAVNELVKDTAHENNKIFDEIQ 1089
            LSSTTPMSFDISQNAGKLAGAVNELVKDTAHENNKIFDEIQ
Sbjct: 301  LSSTTPMSFDISQNAGKLAGAVNELVKDTAHENNKIFDEIQ 341

Lambda     K      H
   0.313    0.126    0.340

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,464,573,510
Number of extensions: 24105521
Number of successful extensions: 61015
Number of sequences better than 10.0: 7
Number of HSP's gapped: 60997
Number of HSP's successfully gapped: 7
Length of query: 405
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 274
Effective length of database: 627,191,635
Effective search space: 171850507990
Effective search space used: 171850507990
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.75  gvh: 0.47  alm: 0.30  top: 0.63  tms: 0.07  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.01  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: vesicles of secretory system
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for Contig-U13922-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 2
AH (FL, L) 0
AF (FL, S) 3
SL (DIR, L) 4
SS (DIR, S) 6
SH (FL, L) 0
SF (FL, S) 3
CH (FL, L) 2
CF (FL, S) 3
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0