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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U13910-1
Contig ID Contig-U13910-1
Contig update 2002.12.18
Contig sequence 
>Contig-U13910-1 (Contig-U13910-1Q) /CSM_Contig/Contig-U13910-1Q.Seq.d
CACCAATTAAGTCTGTTAAATTCAAGGATTTCTTTATGGGTGACCAGTTG
AGTAGTTTAGTATTGATGATTGTCCAATTCGCTCAGTTTGTTTGTTTTTA
CACTTATGATGTTTACAGACCTGAGCATAGTGGAGGGTGTATTCGATATG
CACGTTATTTCAATCCATTCATATCTGGTTTACCAGCATATTGCCGTCTA
ATGCAATGTTTCAGACGTTACTATGACAGTTATGACAGCACCACTGGTAA
GGGTGACACTGTACATCTCAGAAATGCCGTTAAATATTCATTATCAATTG
TAGTGGTGGTTTGCTCAACTTTGGATGGTTTCTTCTCTGGTGACAGTGGT
TGGCATTCACCATATAGATTAATTTGGGTAGTTGCAGGTGTATCGAATTC
AATGTATTCCTATTGGTGGGATTTAATATGTGATTGGAGTATTGTAGTTA
GACCAAAAGGTCAACATTGGAACCCATTCAAATGGACTCTTAGAAAGAGA
AGAATGTATCAACCTACCTTTGTTTACTATTTTGCAATCTTTTCAAATCT
TGGATTTAGAACAACTTGGACCTTTACAAAATCATTACCACAATTAACAA
ACATTTTACCATCTTATAAATTAGTTGTCGTAATTGGTATTATTGAAATC
CAAGAAGAGGTCAATGGAATATTTTTAGATTAGAAAATGAACATTTAAAT
AATTGTGGTAAATTTAGAGTAACAAGAGAAATACCATTACCCTATCAAAT
TAGAGATAANAAAATTAAATAAATAAATAAATAAATAACAACACAT
Gap no gap
Contig length 796
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 4129454
End point 4130252
Strand (PLUS/MINUS) PLUS
Number of clones 8
Number of EST 8
Link to clone list U13910
List of clone(s) 

est1=AHM814Z,1,710
est2=AHF236Z,34,671
est3=SHG186Z,39,645
est4=CHO559Z,42,678
est5=SHE354Z,42,678
est6=AFE195Z,45,797
est7=AHQ140Z,82,684
est8=AHA718Z,494,657
Translated Amino Acid sequence 
PIKSVKFKDFFMGDQLSSLVLMIVQFAQFVCFYTYDVYRPEHSGGCIRYARYFNPFISGL
PAYCRLMQCFRRYYDSYDSTTGKGDTVHLRNAVKYSLSIVVVVCSTLDGFFSGDSGWHSP
YRLIWVVAGVSNSMYSYWWDLICDWSIVVRPKGQHWNPFKWTLRKRRMYQPTFVYYFAIF
SNLGFRTTWTFTKSLPQLTNILPSYKLVVVIGIIEIQEEVNGIFLD*kmni*iivvnle*
qekyhypikleixklnk*ink*qh
Translated Amino Acid sequence (All Frames) 
Frame A:
hqlsllnsrislwvts*vv*y**lsnslslfvftlmmftdlsivegvfdmhvisihsylv
yqhiav*cnvsdvtmtvmtaplvrvtlyisemplnihyql*wwfaqlwmvsslvtvvgih
hid*fg*lqvyriqcipiggi*yvigvl*ldqkvnigthsngllereecinlplftilqs
fqildleqlgplqnhyhn*qtfyhlin*ls*lvllkskkrsmeyf*irk*tfk*lw*i*s
nkrntitlsn*r*xn*ink*innnt


Frame B:
tn*vc*iqgflyg*pve*fsiddcpirsvclflhl*clqt*a*wrvysictlfqsihiwf
tsilpsnamfqtll*ql*qhhw*g*hctsqkcr*ifiincsggllnfgwfllw*qwlaft
i*inlgscrciefnvfllvgfnm*leycs*tkrstlepiqmds*keknvstylcllfcnl
fkswi*nnldlykiittinkhftil*iscrnwyy*nprrgqwnifrlenehlnncgkfrv
treiplpyqirdxkik*ink*itth


Frame C:
PIKSVKFKDFFMGDQLSSLVLMIVQFAQFVCFYTYDVYRPEHSGGCIRYARYFNPFISGL
PAYCRLMQCFRRYYDSYDSTTGKGDTVHLRNAVKYSLSIVVVVCSTLDGFFSGDSGWHSP
YRLIWVVAGVSNSMYSYWWDLICDWSIVVRPKGQHWNPFKWTLRKRRMYQPTFVYYFAIF
SNLGFRTTWTFTKSLPQLTNILPSYKLVVVIGIIEIQEEVNGIFLD*kmni*iivvnle*
qekyhypikleixklnk*ink*qh
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U13910-1 (Contig-U13910-1Q)
/CSM_Contig/Contig-U13910-1Q.Seq.d
         (796 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13910-1 (Contig-U13910-1Q) /CSM_Contig/Conti...  1497  0.0
Contig-U11146-1 (Contig-U11146-1Q) /CSM_Contig/Conti...    34  0.22
Contig-U06101-1 (Contig-U06101-1Q) /CSM_Contig/Conti...    34  0.22
Contig-U04326-1 (Contig-U04326-1Q) /CSM_Contig/Conti...    34  0.22
Contig-U03678-1 (Contig-U03678-1Q) /CSM_Contig/Conti...    34  0.22
Contig-U02594-1 (Contig-U02594-1Q) /CSM_Contig/Conti...    34  0.22
Contig-U14892-1 (Contig-U14892-1Q) /CSM_Contig/Conti...    32  0.87
Contig-U14443-1 (Contig-U14443-1Q) /CSM_Contig/Conti...    32  0.87
Contig-U13879-1 (Contig-U13879-1Q) /CSM_Contig/Conti...    32  0.87
Contig-U13354-1 (Contig-U13354-1Q) /CSM_Contig/Conti...    32  0.87

>Contig-U13910-1 (Contig-U13910-1Q) /CSM_Contig/Contig-U13910-1Q.Seq.d
          Length = 796

 Score = 1497 bits (755), Expect = 0.0
 Identities = 755/755 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caccaattaagtctgttaaattcaaggatttctttatgggtgaccagttgagtagtttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   caccaattaagtctgttaaattcaaggatttctttatgggtgaccagttgagtagtttag 60

                                                                       
Query: 61  tattgatgattgtccaattcgctcagtttgtttgtttttacacttatgatgtttacagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tattgatgattgtccaattcgctcagtttgtttgtttttacacttatgatgtttacagac 120

                                                                       
Query: 121 ctgagcatagtggagggtgtattcgatatgcacgttatttcaatccattcatatctggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctgagcatagtggagggtgtattcgatatgcacgttatttcaatccattcatatctggtt 180

                                                                       
Query: 181 taccagcatattgccgtctaatgcaatgtttcagacgttactatgacagttatgacagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 taccagcatattgccgtctaatgcaatgtttcagacgttactatgacagttatgacagca 240

                                                                       
Query: 241 ccactggtaagggtgacactgtacatctcagaaatgccgttaaatattcattatcaattg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ccactggtaagggtgacactgtacatctcagaaatgccgttaaatattcattatcaattg 300

                                                                       
Query: 301 tagtggtggtttgctcaactttggatggtttcttctctggtgacagtggttggcattcac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tagtggtggtttgctcaactttggatggtttcttctctggtgacagtggttggcattcac 360

                                                                       
Query: 361 catatagattaatttgggtagttgcaggtgtatcgaattcaatgtattcctattggtggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 catatagattaatttgggtagttgcaggtgtatcgaattcaatgtattcctattggtggg 420

                                                                       
Query: 421 atttaatatgtgattggagtattgtagttagaccaaaaggtcaacattggaacccattca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atttaatatgtgattggagtattgtagttagaccaaaaggtcaacattggaacccattca 480

                                                                       
Query: 481 aatggactcttagaaagagaagaatgtatcaacctacctttgtttactattttgcaatct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aatggactcttagaaagagaagaatgtatcaacctacctttgtttactattttgcaatct 540

                                                                       
Query: 541 tttcaaatcttggatttagaacaacttggacctttacaaaatcattaccacaattaacaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tttcaaatcttggatttagaacaacttggacctttacaaaatcattaccacaattaacaa 600

                                                                       
Query: 601 acattttaccatcttataaattagttgtcgtaattggtattattgaaatccaagaagagg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 acattttaccatcttataaattagttgtcgtaattggtattattgaaatccaagaagagg 660

                                                                       
Query: 661 tcaatggaatatttttagattagaaaatgaacatttaaataattgtggtaaatttagagt 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tcaatggaatatttttagattagaaaatgaacatttaaataattgtggtaaatttagagt 720

                                              
Query: 721 aacaagagaaataccattaccctatcaaattagag 755
           |||||||||||||||||||||||||||||||||||
Sbjct: 721 aacaagagaaataccattaccctatcaaattagag 755


>Contig-U11146-1 (Contig-U11146-1Q) /CSM_Contig/Contig-U11146-1Q.Seq.d
          Length = 2547

 Score = 34.2 bits (17), Expect = 0.22
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 292  tatcaattgtagtggtg 308
            |||||||||||||||||
Sbjct: 2147 tatcaattgtagtggtg 2163


>Contig-U06101-1 (Contig-U06101-1Q) /CSM_Contig/Contig-U06101-1Q.Seq.d
          Length = 1113

 Score = 34.2 bits (17), Expect = 0.22
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                             
Query: 527  ctattttgcaatctttt 543
            |||||||||||||||||
Sbjct: 1072 ctattttgcaatctttt 1056


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7705
Number of Sequences: 6905
Number of extensions: 7705
Number of successful extensions: 826
Number of sequences better than 10.0: 68
length of query: 796
length of database: 5,674,871
effective HSP length: 16
effective length of query: 780
effective length of database: 5,564,391
effective search space: 4340224980
effective search space used: 4340224980
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.15
Homology vs DNA 
Query= Contig-U13910-1 (Contig-U13910-1Q) /CSM_Contig/Contig-U13910-1Q.Seq.d
         (796 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ355235) Dictyostelium discoideum cDNA clone:dda56l04, 3' ...  1291   0.0    2
(BJ405707) Dictyostelium discoideum cDNA clone:dds32l13, 3' ...  1251   0.0    1
(BJ385021) Dictyostelium discoideum cDNA clone:ddc51e15, 3' ...  1229   0.0    1
(BJ350885) Dictyostelium discoideum cDNA clone:dda41g10, 3' ...  1225   0.0    2
(BJ406919) Dictyostelium discoideum cDNA clone:dds36k21, 3' ...  1197   0.0    1
(BJ342210) Dictyostelium discoideum cDNA clone:dda9m23, 3' e...  1189   0.0    2
(BJ346599) Dictyostelium discoideum cDNA clone:dda24n11, 3' ...  1185   0.0    2
(BJ357403) Dictyostelium discoideum cDNA clone:dda63o09, 3' ...  1124   0.0    2
(BJ348050) Dictyostelium discoideum cDNA clone:dda32d05, 3' ...   307   3e-79  1
(BJ340297) Dictyostelium discoideum cDNA clone:dda12b15, 3' ...    56   0.002  1
(EA485956) Sequence 403 from patent US 7348410.                    50   0.13   1
(CS431482) Sequence 403 from Patent EP1710252.                     50   0.13   1
(BD281953) Flea head, nerve cord, hindgut and malpighian tub...    50   0.13   1
(BM058982) 2204-12 hindgut and Malpighian tubule subtracted ...    50   0.13   1
(BF732116) 3204-11 hindgut and Malpighian tubule subtracted ...    50   0.13   1
(AC093721) Homo sapiens BAC clone CTD-2010B10 from 4, comple...    42   0.73   2
(AC221917) Bos taurus clone CH240-378D14, WORKING DRAFT SEQU...    38   1.00   3
(CU633438) Podospora anserina genomic DNA chromosome 1, supe...    46   2.0    1
(BH548606) BOGRW54TF BOGR Brassica oleracea genomic clone BO...    46   2.0    1
(ER780279) TAACSP3AShA_0125M01R TAACSP3AShA Triticum aestivu...    46   2.0    1
(CC952299) BOICA11TR BO_1.4_1.6_KB_nuc Brassica oleracea gen...    46   2.0    1
(AG594055) Mus musculus molossinus DNA, clone:MSMg01-523N08....    40   4.7    2
(EJ390104) 1092963908425 Global-Ocean-Sampling_GS-28-01-01-1...    34   5.1    2
(AC212843) Populus trichocarpa clone POP014-M10, complete se...    42   6.3    5
(CT574573) Zebrafish DNA sequence from clone CH211-241E20 in...    44   7.9    1
(BX950188) Zebrafish DNA sequence from clone DKEY-111K7 in l...    44   7.9    1
(BX569794) Zebrafish DNA sequence from clone DKEYP-15B2 in l...    44   7.9    1
(AC113936) Mus musculus chromosome 10, clone RP23-9F21, comp...    44   7.9    1
(AP008214) Oryza sativa (japonica cultivar-group) genomic DN...    44   7.9    1
(AP005731) Oryza sativa Japonica Group genomic DNA, chromoso...    44   7.9    1
(EA701175) Sequence 80054 from patent US 7365185.                  44   7.9    1
(AC106047) Homo sapiens BAC clone RP11-293A21 from 4, comple...    44   7.9    1
(AC128895) Rattus norvegicus clone CH230-191L18, WORKING DRA...    44   7.9    1
(AC097339) Rattus norvegicus clone CH230-72P21, WORKING DRAF...    44   7.9    1
(AC069167) Homo sapiens chromosome 4 clone RP13-488M23 map 4...    44   7.9    1
(AC214324) Pteropus vampyrus clone CH279-238D6, WORKING DRAF...    44   7.9    1
(AC209638) Zea mays chromosome 2 clone CH201-365N14; ZMMBBc0...    44   7.9    1
(AC199505) Zea mays chromosome 2 clone CH201-238M14; ZMMBBc0...    44   7.9    1
(AC188368) Taeniopygia guttata clone TG_Ba-112O8, WORKING DR...    44   7.9    1
(AC183355) Taeniopygia guttata clone TG_Ba-365A20, WORKING D...    44   7.9    1
(ED015623) MUGQ_CH252P104B23Sp6_CN43_096 CHORI-252 Vervet Mo...    44   7.9    1
(DE119815) Oryzias latipes DNA, forward end of BAC clone: Md...    44   7.9    1
(CW580480) OA_ABa0110J17.r OA_ABa Oryza australiensis genomi...    44   7.9    1
(CL806932) OR_CBa0020N17.f OR_CBa Oryza rufipogon genomic cl...    44   7.9    1
(CC304033) CH261-91E16_RM1.1 CH261 Gallus gallus genomic clo...    44   7.9    1
(CI352429) Oryza sativa Japonica Group cDNA, clone: J02B3074...    44   7.9    1
(FE817250) CCAG33359.g1 CCAG Petrolisthes cinctipes heart, g...    44   7.9    1
(FE810707) CCAG29365.g1 CCAG Petrolisthes cinctipes heart, g...    44   7.9    1
(FE810515) CCAG29249.g1 CCAG Petrolisthes cinctipes heart, g...    44   7.9    1
(FE808293) CCAG27917.g1 CCAG Petrolisthes cinctipes heart, g...    44   7.9    1
(FE798176) CCAG21876.g1 CCAG Petrolisthes cinctipes heart, g...    44   7.9    1
(FE790792) CCAG17693.g1 CCAG Petrolisthes cinctipes heart, g...    44   7.9    1
(FE766533) CCAG3285.g1 CCAG Petrolisthes cinctipes heart, gi...    44   7.9    1
(FE766532) CCAG3285.b3 CCAG Petrolisthes cinctipes heart, gi...    44   7.9    1
(FC811264) Sr_pASP6_07a17_SP6 S. ratti mixed stage pAMP Stro...    44   7.9    1
(EX970702) CAGO5258.fwd CAGO Karenia brevis Karbr Stressed (...    44   7.9    1
(EX970607) CAGO5207.fwd CAGO Karenia brevis Karbr Stressed (...    44   7.9    1
(AC216840) Populus trichocarpa clone POP033-J16, complete se...    42   8.9    3

>(BJ355235) Dictyostelium discoideum cDNA clone:dda56l04, 3' end,
           single read.
          Length = 710

 Score = 1291 bits (651), Expect(2) = 0.0
 Identities = 651/651 (100%)
 Strand = Plus / Minus


Query: 1   caccaattaagtctgttaaattcaaggatttctttatgggtgaccagttgagtagtttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 caccaattaagtctgttaaattcaaggatttctttatgggtgaccagttgagtagtttag 651


Query: 61  tattgatgattgtccaattcgctcagtttgtttgtttttacacttatgatgtttacagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 tattgatgattgtccaattcgctcagtttgtttgtttttacacttatgatgtttacagac 591


Query: 121 ctgagcatagtggagggtgtattcgatatgcacgttatttcaatccattcatatctggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 ctgagcatagtggagggtgtattcgatatgcacgttatttcaatccattcatatctggtt 531


Query: 181 taccagcatattgccgtctaatgcaatgtttcagacgttactatgacagttatgacagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 taccagcatattgccgtctaatgcaatgtttcagacgttactatgacagttatgacagca 471


Query: 241 ccactggtaagggtgacactgtacatctcagaaatgccgttaaatattcattatcaattg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ccactggtaagggtgacactgtacatctcagaaatgccgttaaatattcattatcaattg 411


Query: 301 tagtggtggtttgctcaactttggatggtttcttctctggtgacagtggttggcattcac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tagtggtggtttgctcaactttggatggtttcttctctggtgacagtggttggcattcac 351


Query: 361 catatagattaatttgggtagttgcaggtgtatcgaattcaatgtattcctattggtggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 catatagattaatttgggtagttgcaggtgtatcgaattcaatgtattcctattggtggg 291


Query: 421 atttaatatgtgattggagtattgtagttagaccaaaaggtcaacattggaacccattca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 atttaatatgtgattggagtattgtagttagaccaaaaggtcaacattggaacccattca 231


Query: 481 aatggactcttagaaagagaagaatgtatcaacctacctttgtttactattttgcaatct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 aatggactcttagaaagagaagaatgtatcaacctacctttgtttactattttgcaatct 171


Query: 541 tttcaaatcttggatttagaacaacttggacctttacaaaatcattaccacaattaacaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 tttcaaatcttggatttagaacaacttggacctttacaaaatcattaccacaattaacaa 111


Query: 601 acattttaccatcttataaattagttgtcgtaattggtattattgaaatcc 651
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 acattttaccatcttataaattagttgtcgtaattggtattattgaaatcc 60

 Score = 61.9 bits (31), Expect(2) = 0.0
 Identities = 31/31 (100%)
 Strand = Plus / Minus


Query: 652 aagaagaggtcaatggaatatttttagatta 682
           |||||||||||||||||||||||||||||||
Sbjct: 58  aagaagaggtcaatggaatatttttagatta 28

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 843,017,571
Number of extensions: 50638283
Number of successful extensions: 4705292
Number of sequences better than 10.0: 58
Length of query: 796
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 772
Effective length of database: 97,308,875,965
Effective search space: 75122452244980
Effective search space used: 75122452244980
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 8
Homology vs Protein 
Query= Contig-U13910-1 (Contig-U13910-1Q) /CSM_Contig/Contig-U13910-1Q.Seq.d
         (796 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54G02) RecName: Full=SPX and EXS domain-containing protein 5;       447   e-141
(A8DZH4) RecName: Full=Xenotropic and polytropic retrovirus rece...    97   2e-27
(Q54MJ9) RecName: Full=SPX and EXS domain-containing protein 3; ...    99   3e-26
AL133058_1(AL133058|pid:none) Homo sapiens mRNA; cDNA DKFZp434K0...    93   4e-26
AL137583_1(AL137583|pid:none) Homo sapiens mRNA; cDNA DKFZp434F1...    93   4e-26
AY057574_1(AY057574|pid:none) Arabidopsis thaliana At1g68740/F24...    84   6e-26
BC163273_1(BC163273|pid:none) Danio rerio si:dkey-6n6.7, mRNA (c...    92   9e-26
(Q9TU72) RecName: Full=Xenotropic and polytropic retrovirus rece...    91   2e-25
FN357369_16(FN357369|pid:none) Schistosoma mansoni genome sequen...    89   2e-25
AY507959_1(AY507959|pid:none) Arabidopsis thaliana PHO1-like pro...    84   4e-25
AP002845_30(AP002845|pid:none) Oryza sativa Japonica Group genom...    82   6e-25
AF131099_1(AF131099|pid:none) Cricetulus griseus xenotropic and ...    89   8e-25
(Q9QZ70) RecName: Full=Xenotropic and polytropic retrovirus rece...    89   8e-25
BC166142_1(BC166142|pid:none) Xenopus tropicalis xenotropic and ...    89   8e-25
DQ788527_1(DQ788527|pid:none) Physcomitrella patens PHO1-1 mRNA,...    82   1e-24
AF131097_1(AF131097|pid:none) Mus dunni xenotropic and polytropi...    87   2e-24
(Q9QZ71) RecName: Full=Xenotropic and polytropic retrovirus rece...    87   2e-24
AF131096_1(AF131096|pid:none) Mus musculus xenotropic and polytr...    86   4e-24
AC068197_26(AC068197|pid:none) Genomic sequence for Arabidopsis ...    80   8e-24
AY507955_1(AY507955|pid:none) Arabidopsis thaliana PHO1-like pro...    80   8e-24
AE014298_584(AE014298|pid:none) Drosophila melanogaster chromoso...    89   1e-23
AC069160_13(AC069160|pid:none) Arabidopsis thaliana chromosome 1...    78   2e-23
AC008075_2(AC008075|pid:none) Arabidopsis thaliana chromosome 1 ...    84   9e-23
AY507956_1(AY507956|pid:none) Arabidopsis thaliana PHO1-like pro...    78   1e-22
(Q9R031) RecName: Full=Xenotropic and polytropic retrovirus rece...    81   1e-22
AM910993_419(AM910993|pid:none) Plasmodium knowlesi strain H chr...    96   2e-22
DQ788528_1(DQ788528|pid:none) Physcomitrella patens PHO1-2 mRNA,...    73   4e-22
AC073178_18(AC073178|pid:none) Arabidopsis thaliana chromosome 1...    78   6e-22
AY507954_1(AY507954|pid:none) Arabidopsis thaliana PHO1-like pro...    73   7e-22
AY507962_1(AY507962|pid:none) Arabidopsis thaliana PHO1-like pro...    77   7e-22
AK226889_1(AK226889|pid:none) Arabidopsis thaliana mRNA for hypo...    73   7e-22
AB015474_16(AB015474|pid:none) Arabidopsis thaliana genomic DNA,...    72   1e-21
(Q8S403) RecName: Full=Putative phosphate transporter 1;  &AF474...    72   1e-21
AE016817_320(AE016817|pid:none) Ashbya gossypii (= Eremothecium ...    84   1e-21
AC005313_9(AC005313|pid:none) Arabidopsis thaliana chromosome 2 ...    72   3e-21
AM444799_2(AM444799|pid:none) Vitis vinifera contig VV79X001066....    73   6e-21
AL844505_73(AL844505|pid:none) Plasmodium falciparum 3D7 chromos...    91   8e-21
EU258930_1(EU258930|pid:none) Physcomitrella patens PHO1-6 mRNA,...    80   1e-20
AM424416_2(AM424416|pid:none) Vitis vinifera contig VV78X196128....    69   1e-20
AE014134_3273(AE014134|pid:none) Drosophila melanogaster chromos...    79   1e-20
AY507957_1(AY507957|pid:none) Arabidopsis thaliana PHO1-like pro...    72   1e-20
AC150777_26(AC150777|pid:none) Medicago truncatula chromosome 7 ...    69   4e-20
AP008218_1271(AP008218|pid:none) Oryza sativa (japonica cultivar...    97   1e-19
AK065252_1(AK065252|pid:none) Oryza sativa Japonica Group cDNA c...    97   1e-19
(P40528) RecName: Full=Protein SYG1;  &S49931(S49931;S48245) &U1...    76   2e-19
BT053021_1(BT053021|pid:none) Medicago truncatula clone MTYFL_FM...    69   2e-19
EU970262_1(EU970262|pid:none) Zea mays clone 342824 EXS, C-termi...    96   2e-19
(Q86HQ3) RecName: Full=SPX and EXS domain-containing protein 2; ...    92   4e-19
AC150777_22(AC150777|pid:none) Medicago truncatula chromosome 7 ...    64   7e-19
AY507961_1(AY507961|pid:none) Arabidopsis thaliana PHO1-like pro...    60   2e-18
AP000388_4(AP000388|pid:none) Arabidopsis thaliana genomic DNA, ...    60   2e-18
AC140544_1(AC140544|pid:none) Medicago truncatula clone mth2-17g...    67   2e-18
CP001329_436(CP001329|pid:none) Micromonas sp. RCC299 chromosome...    62   3e-18
CR380958_23(CR380958|pid:none) Candida glabrata strain CBS138 ch...    75   3e-18
AM270128_4(AM270128|pid:none) Aspergillus niger contig An07c0100...    65   4e-18
CP001323_625(CP001323|pid:none) Micromonas sp. RCC299 chromosome...    79   7e-18
(Q54HI2) RecName: Full=SPX and EXS domain-containing protein 4;        87   1e-17
AM920436_1679(AM920436|pid:none) Penicillium chrysogenum Wiscons...    65   1e-17
AY070048_1(AY070048|pid:none) Arabidopsis thaliana unknown prote...    90   2e-17
CR382136_571(CR382136|pid:none) Debaryomyces hansenii strain CBS...    69   2e-16
CR382126_1172(CR382126|pid:none) Kluyveromyces lactis strain NRR...    77   6e-16
CU928165_164(CU928165|pid:none) Kluyveromyces thermotolerans str...    70   2e-15
AC148817_21(AC148817|pid:none) Medicago truncatula chromosome 7 ...    82   4e-15
CR382136_572(CR382136|pid:none) Debaryomyces hansenii strain CBS...    65   5e-15
CR954215_143(CR954215|pid:none) Ostreococcus tauri strain OTTH05...    80   1e-14
AB011485_10(AB011485|pid:none) Arabidopsis thaliana genomic DNA,...    79   2e-14
CP000594_128(CP000594|pid:none) Ostreococcus lucimarinus CCE9901...    74   1e-12
CU928171_131(CU928171|pid:none) Kluyveromyces thermotolerans str...    72   2e-11
AL162431_2(AL162431|pid:none) Human DNA sequence from clone RP11...    49   2e-11
CQ783676_1(CQ783676|pid:none) Sequence 3816 from Patent EP1396543.     49   2e-11
EU258929_1(EU258929|pid:none) Physcomitrella patens PHO1-5 mRNA,...    69   1e-10
AC005313_8(AC005313|pid:none) Arabidopsis thaliana chromosome 2 ...    67   2e-10
CU633438_457(CU633438|pid:none) Podospora anserina genomic DNA c...    69   2e-10
CR940348_782(CR940348|pid:none) Theileria annulata strain Ankara...    56   5e-10
CP001325_747(CP001325|pid:none) Micromonas sp. RCC299 chromosome...    65   3e-09
CR858618_1(CR858618|pid:none) Pongo abelii mRNA; cDNA DKFZp469O0...    63   1e-08
CR858181_1(CR858181|pid:none) Pongo abelii mRNA; cDNA DKFZp469I0...    63   1e-08
AE016814_314(AE016814|pid:none) Ashbya gossypii (= Eremothecium ...    57   5e-07
AP007151_97(AP007151|pid:none) Aspergillus oryzae RIB40 genomic ...    57   5e-07
CR380952_111(CR380952|pid:none) Candida glabrata strain CBS138 c...    56   1e-06
AK221975_1(AK221975|pid:none) Arabidopsis thaliana mRNA for hypo...    53   1e-05
AE017350_101(AE017350|pid:none) Cryptococcus neoformans var. neo...    51   5e-05
CR954211_347(CR954211|pid:none) Ostreococcus tauri strain OTTH05...    50   6e-05
X51949_1(X51949|pid:none) Saccharomyces cerevisiae ERD1 gene.          48   1e-04
(P16151) RecName: Full=Protein ERD1;  &S69698(S69698;S22841) &U3...    47   2e-04
AE014134_3272(AE014134|pid:none) Drosophila melanogaster chromos...    45   0.003
FM992688_731(FM992688|pid:none) Candida dubliniensis CD36 chromo...    40   0.11
FN392321_1134(FN392321|pid:none) Pichia pastoris GS115 chromosom...    39   0.19
CR382138_1240(CR382138|pid:none) Debaryomyces hansenii chromosom...    37   0.56
CR382138_1133(CR382138|pid:none) Debaryomyces hansenii strain CB...    37   0.96
FN392319_463(FN392319|pid:none) Pichia pastoris GS115 chromosome...    35   3.6

>(Q54G02) RecName: Full=SPX and EXS domain-containing protein 5;
          Length = 927

 Score =  447 bits (1149), Expect(2) = e-141
 Identities = 207/207 (100%), Positives = 207/207 (100%)
 Frame = +3

Query: 3    PIKSVKFKDFFMGDQLSSLVLMIVQFAQFVCFYTYDVYRPEHSGGCIRYARYFNPFISGL 182
            PIKSVKFKDFFMGDQLSSLVLMIVQFAQFVCFYTYDVYRPEHSGGCIRYARYFNPFISGL
Sbjct: 673  PIKSVKFKDFFMGDQLSSLVLMIVQFAQFVCFYTYDVYRPEHSGGCIRYARYFNPFISGL 732

Query: 183  PAYCRLMQCFRRYYDSYDSTTGKGDTVHLRNAVKYSLSIVVVVCSTLDGFFSGDSGWHSP 362
            PAYCRLMQCFRRYYDSYDSTTGKGDTVHLRNAVKYSLSIVVVVCSTLDGFFSGDSGWHSP
Sbjct: 733  PAYCRLMQCFRRYYDSYDSTTGKGDTVHLRNAVKYSLSIVVVVCSTLDGFFSGDSGWHSP 792

Query: 363  YRLIWVVAGVSNSMYSYWWDLICDWSIVVRPKGQHWNPFKWTLRKRRMYQPTFVYYFAIF 542
            YRLIWVVAGVSNSMYSYWWDLICDWSIVVRPKGQHWNPFKWTLRKRRMYQPTFVYYFAIF
Sbjct: 793  YRLIWVVAGVSNSMYSYWWDLICDWSIVVRPKGQHWNPFKWTLRKRRMYQPTFVYYFAIF 852

Query: 543  SNLGFRTTWTFTKSLPQLTNILPSYKL 623
            SNLGFRTTWTFTKSLPQLTNILPSYKL
Sbjct: 853  SNLGFRTTWTFTKSLPQLTNILPSYKL 879

 Score = 80.1 bits (196), Expect(2) = e-141
 Identities = 35/35 (100%), Positives = 35/35 (100%)
 Frame = +2

Query: 653 RRGQWNIFRLENEHLNNCGKFRVTREIPLPYQIRD 757
           RRGQWNIFRLENEHLNNCGKFRVTREIPLPYQIRD
Sbjct: 890 RRGQWNIFRLENEHLNNCGKFRVTREIPLPYQIRD 924

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,325,891,913
Number of extensions: 27554740
Number of successful extensions: 63276
Number of sequences better than 10.0: 91
Number of HSP's gapped: 63089
Number of HSP's successfully gapped: 166
Length of query: 265
Length of database: 1,051,180,864
Length adjustment: 126
Effective length of query: 139
Effective length of database: 643,374,430
Effective search space: 89429045770
Effective search space used: 89429045770
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.77  gvh: 0.46  alm: 0.29  top: 0.43  tms: 0.07  mit: 0.17  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 24.0 %: endoplasmic reticulum
	 20.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: plasma membrane
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U13910-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 4
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 2
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0