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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U13906-1
Contig ID Contig-U13906-1
Contig update 2002.12.18
Contig sequence 
>Contig-U13906-1 (Contig-U13906-1Q) /CSM_Contig/Contig-U13906-1Q.Seq.d
ATACATTAACAATTATTGAACAATCTTTAGAAGAATTAAAAAATCAAGAA
AATAAAAAGAAATCGTCAACTTCTTCAACTACTACCACTACCGCTACAAC
AACAATTGAATGGAAATCAAAATCAATTAAAGTTGATGAAAAACTTGATG
AAAAATTAAAAATATTTAATGAATTTAAAAAAGAGAATGAAAATAAATTA
CCAAAGAATATTAATGCATCAATTGATACAACATCAAATATTTCACCAAT
TTTCAATATTTATGATAAATTGGTTTATAATTTAATCAATTGTGAAACCA
TTGTAAAGAATGATCTATCAACATTGGTTAGAGTAAACTTAAAGAATAAA
TCGGTAAAGAGTGAAATTGAAGAACAATCAACTAGAATACTCTTGGCCTA
CATTATGTATCATAAAATGAAGTATCTCTATGAGAGAAATTCAATTTTAA
TCACAATGATGCAAAGAGTATTGGATGGTGAAAAGGTGGATGAATCTGCA
ATTAAAAAGAAAGTTAAGAAAGTAACTTGGAATGATTTGGTACGTTTATC
AACTCATCAAGTTAAAGTCTATACAATCATGAGTGAAAGTAGGGATACCG
ATTCAAATAAAGAGATTGCAAGAGACCAAGATGCTCAGCTAATCCTATTG
AAATCTATTAGACTCTATTATATTGCAGTTTGTTTAGCTAAATCTTTGAA
ATTCTCTGAAACTATGGCTGTATTGGATAGAGTACTTACAAACATTCAAA
ATGTTCGTAAAACCAATACTAAAAATCAACAAATTCTTAATGATACAAAT
GAATTGGAATCAAATATAAAGAAACAAAGATCACAAATTCATGCAAACTC
TTTCATTCAACAATTGTCAGAGAATCAAGATTTAAAAAATCAAATGTCTT
CTTTATCAATTGGTGGTATTACCACTGCCTCTGGCAAATCAAATGATTTA
ATCTCTGGTTTAGATTCATTCGATACCTCTTTCTTGACTGAAAAGAAATT
GGTTCAATTACCACCACAACTTCAACCTGTTCAAGCCAAACCAATCTTTT
TCGATTTAGCTTTCAATAGTGTTACTTTCCCATCATTAGATCAAAGAAAG
AAAGGTAGTTCAACTGGTACTCCTTCAAAAGGTTTATTTGGTTTTTGGGG
TAGAGGTTAAAATTTTTTAATTTTAAAAATAATAATAACTAAAAATAAAA
AAATAAACAATTAACCAAATATTAAAAAAAAAAC
Gap no gap
Contig length 1234
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 3710614
End point 3711849
Strand (PLUS/MINUS) PLUS
Number of clones 3
Number of EST 4
Link to clone list U13906
List of clone(s) 

est1=CHJ555F,1,513
est2=AFD760Z,478,1168
est3=CHJ555Z,716,1235
est4=VSA344Z,828,1226
Translated Amino Acid sequence 
TLTIIEQSLEELKNQENKKKSSTSSTTTTTATTTIEWKSKSIKVDEKLDEKLKIFNEFKK
ENENKLPKNINASIDTTSNISPIFNIYDKLVYNLINCETIVKNDLSTLVRVNLKNKSVKS
EIEEQSTRILLAYIMYHKMKYLYERNSILITMMQRVLDGEKVDESAIKKKVKKVTWNDLV
RLSTHQVKVYTIMSESRDTDSNKEIARDQDAQLILLKSIRLYYIAVCLAKSLKFSETMAV
LDRVLTNIQNVRKTNTKNQQILNDTNELESNIKKQRSQIHANSFIQQLSENQDLKNQMSS
LSIGGITTASGKSNDLISGLDSFDTSFLTEKKLVQLPPQLQPVQAKPIFFDLAFNSVTFP
SLDQRKKGSSTGTPSKGLFGFWGRG*nflilkiiitknkkinn*pnikkk
Translated Amino Acid sequence (All Frames) 
Frame A:
ih*qllnnl*kn*kikkikrnrqllqllplplqqqlngnqnqlklmknlmkn*kylmnlk
krmkinyqrilmhqliqhqifhqfsifminwfii*sivkpl*rmiyqhwle*t*rinr*r
vklknnqleyswptlciik*sismreiqf*sq*ckeywmvkrwmnlqlkrklrk*lgmiw
yvyqliklksiqs*vkvgipiqikrlqetkmls*sy*nlldsiilqfv*lnl*nslklwl
ywieylqtfkmfvkpilkinkflmiqmnwnqi*rnkdhkfmqtlsfnncqriki*kikcl
lyqlvvlplplanqmi*slv*ihsipls*lkrnwfnyhhnfnlfkpnqsfsi*lsivlls
hh*ikerkvvqlvllqkvylvfgvevkif*f*k***lkikk*tinqilkkk


Frame B:
yinny*tifrrikksrk*keivnffnyyhyrynnn*meikin*s**kt**kikni**i*k
re*k*itkey*cin*ynikyftnfqyl**igl*fnql*nhcke*sinig*sklke*igke
*n*rtin*ntlglhyvs*nevsl*ekfnfnhndaksigw*kgg*icn*kes*esnle*fg
tfinsss*slynhe*k*gyrfk*rdckrprcsanpieiy*tllycslfs*ifeil*nygc
ig*stykhskcs*nqy*kstns**yk*igikyketkitnscklfhstivresrfkksnvf
finwwyyhclwqik*fnlwfrfirylfld*keigsittttstcssqtnlfrfsfq*cyfp
iirskker*fnwysfkrfiwflg*rlkffnfknnnn*k*knkqltky*kkn


Frame C:
TLTIIEQSLEELKNQENKKKSSTSSTTTTTATTTIEWKSKSIKVDEKLDEKLKIFNEFKK
ENENKLPKNINASIDTTSNISPIFNIYDKLVYNLINCETIVKNDLSTLVRVNLKNKSVKS
EIEEQSTRILLAYIMYHKMKYLYERNSILITMMQRVLDGEKVDESAIKKKVKKVTWNDLV
RLSTHQVKVYTIMSESRDTDSNKEIARDQDAQLILLKSIRLYYIAVCLAKSLKFSETMAV
LDRVLTNIQNVRKTNTKNQQILNDTNELESNIKKQRSQIHANSFIQQLSENQDLKNQMSS
LSIGGITTASGKSNDLISGLDSFDTSFLTEKKLVQLPPQLQPVQAKPIFFDLAFNSVTFP
SLDQRKKGSSTGTPSKGLFGFWGRG*nflilkiiitknkkinn*pnikkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U13906-1 (Contig-U13906-1Q)
/CSM_Contig/Contig-U13906-1Q.Seq.d
         (1234 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13906-1 (Contig-U13906-1Q) /CSM_Contig/Conti...  1867  0.0
Contig-U01172-1 (Contig-U01172-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U12087-1 (Contig-U12087-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U11670-1 (Contig-U11670-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U11332-1 (Contig-U11332-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U12384-1 (Contig-U12384-1Q) /CSM_Contig/Conti...    36  0.087
Contig-U11214-1 (Contig-U11214-1Q) /CSM_Contig/Conti...    36  0.087
Contig-U11147-1 (Contig-U11147-1Q) /CSM_Contig/Conti...    36  0.087
Contig-U09729-1 (Contig-U09729-1Q) /CSM_Contig/Conti...    36  0.087
Contig-U08154-1 (Contig-U08154-1Q) /CSM_Contig/Conti...    36  0.087

>Contig-U13906-1 (Contig-U13906-1Q) /CSM_Contig/Contig-U13906-1Q.Seq.d
          Length = 1234

 Score = 1867 bits (942), Expect = 0.0
 Identities = 942/942 (100%)
 Strand = Plus / Plus

                                                                        
Query: 216  gcatcaattgatacaacatcaaatatttcaccaattttcaatatttatgataaattggtt 275
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216  gcatcaattgatacaacatcaaatatttcaccaattttcaatatttatgataaattggtt 275

                                                                        
Query: 276  tataatttaatcaattgtgaaaccattgtaaagaatgatctatcaacattggttagagta 335
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276  tataatttaatcaattgtgaaaccattgtaaagaatgatctatcaacattggttagagta 335

                                                                        
Query: 336  aacttaaagaataaatcggtaaagagtgaaattgaagaacaatcaactagaatactcttg 395
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336  aacttaaagaataaatcggtaaagagtgaaattgaagaacaatcaactagaatactcttg 395

                                                                        
Query: 396  gcctacattatgtatcataaaatgaagtatctctatgagagaaattcaattttaatcaca 455
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396  gcctacattatgtatcataaaatgaagtatctctatgagagaaattcaattttaatcaca 455

                                                                        
Query: 456  atgatgcaaagagtattggatggtgaaaaggtggatgaatctgcaattaaaaagaaagtt 515
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456  atgatgcaaagagtattggatggtgaaaaggtggatgaatctgcaattaaaaagaaagtt 515

                                                                        
Query: 516  aagaaagtaacttggaatgatttggtacgtttatcaactcatcaagttaaagtctataca 575
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516  aagaaagtaacttggaatgatttggtacgtttatcaactcatcaagttaaagtctataca 575

                                                                        
Query: 576  atcatgagtgaaagtagggataccgattcaaataaagagattgcaagagaccaagatgct 635
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576  atcatgagtgaaagtagggataccgattcaaataaagagattgcaagagaccaagatgct 635

                                                                        
Query: 636  cagctaatcctattgaaatctattagactctattatattgcagtttgtttagctaaatct 695
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636  cagctaatcctattgaaatctattagactctattatattgcagtttgtttagctaaatct 695

                                                                        
Query: 696  ttgaaattctctgaaactatggctgtattggatagagtacttacaaacattcaaaatgtt 755
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696  ttgaaattctctgaaactatggctgtattggatagagtacttacaaacattcaaaatgtt 755

                                                                        
Query: 756  cgtaaaaccaatactaaaaatcaacaaattcttaatgatacaaatgaattggaatcaaat 815
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756  cgtaaaaccaatactaaaaatcaacaaattcttaatgatacaaatgaattggaatcaaat 815

                                                                        
Query: 816  ataaagaaacaaagatcacaaattcatgcaaactctttcattcaacaattgtcagagaat 875
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816  ataaagaaacaaagatcacaaattcatgcaaactctttcattcaacaattgtcagagaat 875

                                                                        
Query: 876  caagatttaaaaaatcaaatgtcttctttatcaattggtggtattaccactgcctctggc 935
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876  caagatttaaaaaatcaaatgtcttctttatcaattggtggtattaccactgcctctggc 935

                                                                        
Query: 936  aaatcaaatgatttaatctctggtttagattcattcgatacctctttcttgactgaaaag 995
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936  aaatcaaatgatttaatctctggtttagattcattcgatacctctttcttgactgaaaag 995

                                                                        
Query: 996  aaattggttcaattaccaccacaacttcaacctgttcaagccaaaccaatctttttcgat 1055
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 996  aaattggttcaattaccaccacaacttcaacctgttcaagccaaaccaatctttttcgat 1055

                                                                        
Query: 1056 ttagctttcaatagtgttactttcccatcattagatcaaagaaagaaaggtagttcaact 1115
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1056 ttagctttcaatagtgttactttcccatcattagatcaaagaaagaaaggtagttcaact 1115

                                                      
Query: 1116 ggtactccttcaaaaggtttatttggtttttggggtagaggt 1157
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1116 ggtactccttcaaaaggtttatttggtttttggggtagaggt 1157


 Score =  125 bits (63), Expect = 1e-28
 Identities = 63/63 (100%)
 Strand = Plus / Plus

                                                                       
Query: 63  tcgtcaacttcttcaactactaccactaccgctacaacaacaattgaatggaaatcaaaa 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  tcgtcaacttcttcaactactaccactaccgctacaacaacaattgaatggaaatcaaaa 122

              
Query: 123 tca 125
           |||
Sbjct: 123 tca 125


 Score = 73.8 bits (37), Expect = 4e-13
 Identities = 37/37 (100%)
 Strand = Plus / Plus

                                               
Query: 1  atacattaacaattattgaacaatctttagaagaatt 37
          |||||||||||||||||||||||||||||||||||||
Sbjct: 1  atacattaacaattattgaacaatctttagaagaatt 37


>Contig-U01172-1 (Contig-U01172-1Q) /CSM_Contig/Contig-U01172-1Q.Seq.d
          Length = 1705

 Score = 40.1 bits (20), Expect = 0.006
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 899 ttctttatcaattggtggta 918
           ||||||||||||||||||||
Sbjct: 202 ttctttatcaattggtggta 183


>Contig-U12087-1 (Contig-U12087-1Q) /CSM_Contig/Contig-U12087-1Q.Seq.d
          Length = 1678

 Score = 38.2 bits (19), Expect = 0.022
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 71  ttcttcaactactaccactaccgctac 97
           |||||||||||||||||| ||| ||||
Sbjct: 852 ttcttcaactactaccaccaccactac 878


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,200
Number of Sequences: 6905
Number of extensions: 18200
Number of successful extensions: 2070
Number of sequences better than 10.0: 232
length of query: 1234
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1218
effective length of database: 5,564,391
effective search space: 6777428238
effective search space used: 6777428238
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.15
Homology vs DNA 
Query= Contig-U13906-1 (Contig-U13906-1Q) /CSM_Contig/Contig-U13906-1Q.Seq.d
         (1234 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ341887) Dictyostelium discoideum cDNA clone:dda8h15, 3' e...  1287   0.0    1
(BJ381483) Dictyostelium discoideum cDNA clone:ddc41m13, 3' ...   785   0.0    1
(BJ367176) Dictyostelium discoideum cDNA clone:ddc41m13, 5' ...   591   0.0    3
(AU261437) Dictyostelium discoideum vegetative cDNA clone:VS...   593   e-165  1
(AC141676) Apis mellifera clone CH224-55I24, WORKING DRAFT S...    56   0.003  1
(DB777784) Apis mellifera head cDNA, RIKEN full-length enric...    56   0.003  1
(DB769753) Apis mellifera head cDNA, RIKEN full-length enric...    56   0.003  1
(DB761610) Apis mellifera head cDNA, RIKEN full-length enric...    56   0.003  1
(CK630267) AM0-AE0006-131201-022-F02 AE0006 Apis mellifera c...    56   0.003  1
(CK630264) AM0-AE0006-131201-022-E05 AE0006 Apis mellifera c...    56   0.003  1
(CK630261) AM0-AE0006-131201-021-E01 AE0006 Apis mellifera c...    56   0.003  1
(CK630257) AM0-AE0006-131201-022-G03 AE0006 Apis mellifera c...    56   0.003  1
(CK630256) AM0-AE0006-131201-021-H10 AE0006 Apis mellifera c...    56   0.003  1
(CK630254) AM0-AE0006-131201-021-D07 AE0006 Apis mellifera c...    56   0.003  1
(CK630253) AM0-AE0006-131201-021-B07 AE0006 Apis mellifera c...    56   0.003  1
(CK630248) AM0-AE0006-131201-021-G06 AE0006 Apis mellifera c...    56   0.003  1
(CK630247) AM0-AE0006-131201-021-G07 AE0006 Apis mellifera c...    56   0.003  1
(CK630245) AM0-AE0006-131201-022-D04 AE0006 Apis mellifera c...    56   0.003  1
(CK630244) AM0-AE0006-131201-021-D08 AE0006 Apis mellifera c...    56   0.003  1
(CK630242) AM0-AE0006-131201-022-F07 AE0006 Apis mellifera c...    56   0.003  1
(CK630241) AM0-AE0006-131201-021-H08 AE0006 Apis mellifera c...    56   0.003  1
(CK630240) AM0-AE0006-131201-021-G10 AE0006 Apis mellifera c...    56   0.003  1
(CK630238) AM0-AE0006-131201-022-A12 AE0006 Apis mellifera c...    56   0.003  1
(CK630235) AM0-AE0006-131201-022-A04 AE0006 Apis mellifera c...    56   0.003  1
(CK630234) AM0-AE0006-131201-022-B04 AE0006 Apis mellifera c...    56   0.003  1
(CK630233) AM0-AE0006-131201-022-C03 AE0006 Apis mellifera c...    56   0.003  1
(CK630225) AM0-AE0006-131201-022-E06 AE0006 Apis mellifera c...    56   0.003  1
(CK630220) AM0-AE0006-131201-022-H11 AE0006 Apis mellifera c...    56   0.003  1
(CK630219) AM0-AE0006-131201-021-D04 AE0006 Apis mellifera c...    56   0.003  1
(CK630214) AM0-AE0006-131201-022-G06 AE0006 Apis mellifera c...    56   0.003  1
(CK630213) AM0-AE0006-131201-021-G03 AE0006 Apis mellifera c...    56   0.003  1
(CK630209) AM0-AE0006-131201-021-B10 AE0006 Apis mellifera c...    56   0.003  1
(CK630203) AM0-AE0006-131201-021-G02 AE0006 Apis mellifera c...    56   0.003  1
(CK630202) AM0-AE0006-131201-022-B12 AE0006 Apis mellifera c...    56   0.003  1
(CK630200) AM0-AE0006-131201-022-G02 AE0006 Apis mellifera c...    56   0.003  1
(CK630196) AM0-AE0006-131201-021-F03 AE0006 Apis mellifera c...    56   0.003  1
(CK630194) AM0-AE0006-131201-021-C10 AE0006 Apis mellifera c...    56   0.003  1
(CK630192) AM0-AE0006-131201-022-E12 AE0006 Apis mellifera c...    56   0.003  1
(BI512087) BB160008A10F04.5 Bee Brain Normalized Library, BB...    56   0.003  1
(CK630188) AM0-AE0006-131201-021-H09 AE0006 Apis mellifera c...    54   0.013  1
(CK630269) AM0-AE0006-131201-022-B08 AE0006 Apis mellifera c...    52   0.051  1
(CK630205) AM0-AE0006-131201-021-B02 AE0006 Apis mellifera c...    52   0.051  1
(DY895203) CeleSEQ14977 Cunninghamella elegans pBluescript (...    50   0.20   1
(DY894982) CeleSEQ14687 Cunninghamella elegans pBluescript (...    50   0.20   1
(DY892400) CeleSEQ10620 Cunninghamella elegans pBluescript (...    50   0.20   1
(DY889104) CeleSEQ6629 Cunninghamella elegans pBluescript (E...    50   0.20   1
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    34   0.65   12
(AC006617) Caenorhabditis elegans cosmid C39B5, complete seq...    48   0.80   1
(AC006787) Caenorhabditis elegans clone Y48G9, *** SEQUENCIN...    48   0.80   1
(CK630250) AM0-AE0006-131201-021-F10 AE0006 Apis mellifera c...    48   0.80   1
(CK630237) AM0-AE0006-131201-021-E08 AE0006 Apis mellifera c...    48   0.80   1
(CK630236) AM0-AE0006-131201-021-H12 AE0006 Apis mellifera c...    48   0.80   1
(CK630229) AM0-AE0006-131201-021-C02 AE0006 Apis mellifera c...    48   0.80   1
(CK630228) AM0-AE0006-131201-021-F05 AE0006 Apis mellifera c...    48   0.80   1
(CK630204) AM0-AE0006-131201-022-H02 AE0006 Apis mellifera c...    48   0.80   1
(CK630198) AM0-AE0006-131201-022-G09 AE0006 Apis mellifera c...    48   0.80   1
(CK630189) AM0-AE0006-131201-022-G10 AE0006 Apis mellifera c...    48   0.80   1
(AC225002) Bos taurus clone CH240-470E3, WORKING DRAFT SEQUE...    44   0.87   6
(CU633551) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   1.3    5
(AL662839) Mouse DNA sequence from clone RP23-472O5 on chrom...    46   3.2    1
(AC185994) Pan troglodytes BAC clone CH251-306M14 from chrom...    46   3.2    1
(AC069251) Genomic sequence for Arabidopsis thaliana BAC F2D...    46   3.2    1
(EA205032) Sequence 69347 from patent US 7214786.                  46   3.2    1
(AL359513) Human DNA sequence from clone RP11-245D16 on chro...    46   3.2    1
(AC198505) Zea mays chromosome 10 clone CH201-227D13; ZMMBBc...    46   3.2    1
(AC169856) Macaca mulatta clone CH250-257B2, *** SEQUENCING ...    46   3.2    1
(CV008655) zfi01-1ms3-a05 Zfi01 Zamia fischeri cDNA clone zf...    46   3.2    1
(AI458067) tj64c10.x1 Soares_NSF_F8_9W_OT_PA_P_S1 Homo sapie...    46   3.2    1
(AI452629) tj50a09.x1 Soares_NSF_F8_9W_OT_PA_P_S1 Homo sapie...    46   3.2    1
(BQ359102) PM2-HT0624-080801-002-e12 HT0624 Homo sapiens cDN...    46   3.2    1
(BJ272600) Triticum aestivum cDNA clone:whoh12k02, 3' end, s...    46   3.2    1
(AA854461) aj67e07.s1 Soares_parathyroid_tumor_NbHPA Homo sa...    46   3.2    1
(BF438856) nab55b03.x1 Soares_NSF_F8_9W_OT_PA_P_S1 Homo sapi...    46   3.2    1
(BF435196) nab36b10.x1 Soares_NSF_F8_9W_OT_PA_P_S1 Homo sapi...    46   3.2    1
(BE709219) RC6-HT0594-180500-011-D12 HT0594 Homo sapiens cDN...    46   3.2    1
(EY033989) CAIX686.fwd CAIX Artemisia annua leaf Artemisia a...    46   3.2    1
(CP001074) Rhizobium etli CIAT 652, complete genome.               46   3.2    1
(CP000133) Rhizobium etli CFN 42, complete genome.                 46   3.2    1
(AM236080) Rhizobium leguminosarum bv. viciae chromosome com...    46   3.2    1
(AM454098) Vitis vinifera contig VV78X015479.4, whole genome...    34   4.3    3
(BG283136) 602406789F1 NIH_MGC_91 Homo sapiens cDNA clone IM...    34   7.9    2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    32   8.2    12
(CL388044) RPCI44_284K3.r RPCI-44 Sus scrofa genomic clone R...    38   9.5    2
(AC176057) Strongylocentrotus purpuratus clone R3-3024F12, W...    38   9.6    6

>(BJ341887) Dictyostelium discoideum cDNA clone:dda8h15, 3' end,
            single read.
          Length = 688

 Score = 1287 bits (649), Expect = 0.0
 Identities = 649/649 (100%)
 Strand = Plus / Minus


Query: 478  gtgaaaaggtggatgaatctgcaattaaaaagaaagttaagaaagtaacttggaatgatt 537
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688  gtgaaaaggtggatgaatctgcaattaaaaagaaagttaagaaagtaacttggaatgatt 629


Query: 538  tggtacgtttatcaactcatcaagttaaagtctatacaatcatgagtgaaagtagggata 597
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628  tggtacgtttatcaactcatcaagttaaagtctatacaatcatgagtgaaagtagggata 569


Query: 598  ccgattcaaataaagagattgcaagagaccaagatgctcagctaatcctattgaaatcta 657
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568  ccgattcaaataaagagattgcaagagaccaagatgctcagctaatcctattgaaatcta 509


Query: 658  ttagactctattatattgcagtttgtttagctaaatctttgaaattctctgaaactatgg 717
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508  ttagactctattatattgcagtttgtttagctaaatctttgaaattctctgaaactatgg 449


Query: 718  ctgtattggatagagtacttacaaacattcaaaatgttcgtaaaaccaatactaaaaatc 777
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448  ctgtattggatagagtacttacaaacattcaaaatgttcgtaaaaccaatactaaaaatc 389


Query: 778  aacaaattcttaatgatacaaatgaattggaatcaaatataaagaaacaaagatcacaaa 837
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388  aacaaattcttaatgatacaaatgaattggaatcaaatataaagaaacaaagatcacaaa 329


Query: 838  ttcatgcaaactctttcattcaacaattgtcagagaatcaagatttaaaaaatcaaatgt 897
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328  ttcatgcaaactctttcattcaacaattgtcagagaatcaagatttaaaaaatcaaatgt 269


Query: 898  cttctttatcaattggtggtattaccactgcctctggcaaatcaaatgatttaatctctg 957
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268  cttctttatcaattggtggtattaccactgcctctggcaaatcaaatgatttaatctctg 209


Query: 958  gtttagattcattcgatacctctttcttgactgaaaagaaattggttcaattaccaccac 1017
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208  gtttagattcattcgatacctctttcttgactgaaaagaaattggttcaattaccaccac 149


Query: 1018 aacttcaacctgttcaagccaaaccaatctttttcgatttagctttcaatagtgttactt 1077
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148  aacttcaacctgttcaagccaaaccaatctttttcgatttagctttcaatagtgttactt 89


Query: 1078 tcccatcattagatcaaagaaagaaaggtagttcaactggtactccttc 1126
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88   tcccatcattagatcaaagaaagaaaggtagttcaactggtactccttc 40

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,240,429,442
Number of extensions: 78165566
Number of successful extensions: 6301346
Number of sequences better than 10.0: 84
Length of query: 1234
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1210
Effective length of database: 97,308,875,965
Effective search space: 117743739917650
Effective search space used: 117743739917650
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 8
Homology vs Protein 
Query= Contig-U13906-1 (Contig-U13906-1Q) /CSM_Contig/Contig-U13906-1Q.Seq.d
         (1234 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC152635_1(BC152635|pid:none) Danio rerio signal recognition par...    83   2e-14
BC146623_1(BC146623|pid:none) Xenopus laevis hypothetical protei...    68   8e-10
AF195951_1(AF195951|pid:none) Homo sapiens signal recognition pa...    67   1e-09
AK027322_1(AK027322|pid:none) Homo sapiens cDNA FLJ14416 fis, cl...    67   1e-09
A58947(A58947;S12981) signal recognition particle 68K protein - ...    65   5e-09
AJ720601_1(AJ720601|pid:none) Gallus gallus mRNA for hypothetica...    65   6e-09
AL645861_2(AL645861|pid:none) Mouse DNA sequence from clone RP23...    64   1e-08
AL645861_1(AL645861|pid:none) Mouse DNA sequence from clone RP23...    64   1e-08
(Q9VSS2) RecName: Full=Signal recognition particle 68 kDa protei...    63   2e-08
(Q8BMA6) RecName: Full=Signal recognition particle 68 kDa protei...    62   3e-08
BT030729_1(BT030729|pid:none) Bos taurus signal recognition part...    62   4e-08
BC150016_1(BC150016|pid:none) Bos taurus signal recognition part...    62   4e-08
(Q20822) RecName: Full=Probable signal recognition particle 68 k...    55   7e-06
AB022212_10(AB022212|pid:none) Arabidopsis thaliana genomic DNA,...    54   9e-06
BT084878_1(BT084878|pid:none) Zea mays full-length cDNA clone ZM...    51   1e-04
EU972117_1(EU972117|pid:none) Zea mays clone 375382 signal recog...    50   2e-04
AE014186_296(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    48   8e-04
AY815251_1(AY815251|pid:none) Schistosoma japonicum SJCHGC09421 ...    44   0.009
CP000061_339(CP000061|pid:none) Aster yellows witches'-broom phy...    43   0.026
AL844507_87(AL844507|pid:none) Plasmodium falciparum 3D7 chromos...    42   0.034
EU867791_1(EU867791|pid:none) Plasmodium knowlesi normocyte bind...    42   0.045
CP000123_803(CP000123|pid:none) Mycoplasma capricolum subsp. cap...    42   0.045
DQ321780_1(DQ321780|pid:none) Trichomonas vaginalis strain NIH-C...    42   0.045
AL844509_678(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    41   0.077
AL844507_278(AL844507|pid:none) Plasmodium falciparum 3D7 chromo...    41   0.10
CR382129_703(CR382129|pid:none) Yarrowia lipolytica strain CLIB1...    40   0.13
A64505(A64505)P115 homolog - Methanococcus jannaschii                  40   0.13
AL844509_552(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    40   0.17
AL844506_217(AL844506|pid:none) Plasmodium falciparum 3D7 chromo...    40   0.17
T28676(T28676;A45521)rhoptry protein - Plasmodium yoelii (fragme...    40   0.22
CP000939_1415(CP000939|pid:none) Clostridium botulinum B1 str. O...    40   0.22
CP001083_1420(CP001083|pid:none) Clostridium botulinum Ba4 str. ...    40   0.22
(A9KMD6) RecName: Full=Elongation factor P;          Short=EF-P;...    39   0.38
AP009608_345(AP009608|pid:none) Mycoplasma fermentans PG18 DNA, ...    39   0.38
AY445042_1(AY445042|pid:none) Streptococcus pyogenes SpyM6 mefA ...    39   0.38
CP001078_1122(CP001078|pid:none) Clostridium botulinum E3 str. A...    39   0.38
CR380959_174(CR380959|pid:none) Candida glabrata strain CBS138 c...    39   0.50
(Q86KL1) RecName: Full=Probable E3 ubiquitin-protein ligase bre1...    39   0.50
AE002126_2(AE002126|pid:none) Ureaplasma parvum serovar 3 str. A...    38   0.65
FJ406948_1(FJ406948|pid:none) Plasmodium reichenowi isolate CDC-...    38   0.65
(Q94481) RecName: Full=FNIP repeat-containing protein cigB;            38   0.85
CP000382_361(CP000382|pid:none) Clostridium novyi NT, complete g...    38   0.85
CP001581_1445(CP001581|pid:none) Clostridium botulinum A2 str. K...    38   0.85
U66528_1(U66528|pid:none) Dictyostelium discoideum CigB (cigB) m...    38   0.85
CR382400_30(CR382400|pid:none) Plasmodium falciparum chromosome ...    38   0.85
AL844509_475(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    38   0.85
AJ545046_1(AJ545046|pid:none) Mycoplasma hominis vmp gene for va...    38   0.85
AL844505_260(AL844505|pid:none) Plasmodium falciparum 3D7 chromo...    38   0.85
AB250899_1(AB250899|pid:none) Plasmodium falciparum rhoph1/clag2...    37   1.1
AJ416752_8(AJ416752|pid:none) Mycoplasma hominis uvrA gene (part...    37   1.1
BX538351_13(BX538351|pid:none) Cryptosporidium parvum chromosome...    37   1.1
(Q54ML4) RecName: Full=HEAT repeat-containing protein 1 homolog;       37   1.1
CR940348_213(CR940348|pid:none) Theileria annulata strain Ankara...    37   1.1
(Q876G9) RecName: Full=Myosin-2; AltName: Full=Class V unconvent...    37   1.1
AL035476_62(AL035476|pid:none) Plasmodium falciparum MAL4P3.  &A...    37   1.4
(Q9JIL8) RecName: Full=DNA repair protein RAD50;          EC=3.6...    37   1.4
CP000673_3536(CP000673|pid:none) Clostridium kluyveri DSM 555, c...    37   1.4
AE017308_276(AE017308|pid:none) Mycoplasma mobile 163K complete ...    37   1.4
AP009049_3188(AP009049|pid:none) Clostridium kluyveri NBRC 12016...    37   1.4
CP000025_909(CP000025|pid:none) Campylobacter jejuni RM1221, com...    37   1.4
(Q54G05) RecName: Full=Putative leucine-rich repeat-containing p...    37   1.4
(O51066) RecName: Full=DNA topoisomerase 4 subunit A;          E...    37   1.4
CR382137_815(CR382137|pid:none) Debaryomyces hansenii strain CBS...    37   1.4
CP001047_144(CP001047|pid:none) Mycoplasma arthritidis 158L3-1, ...    37   1.4
BC171526_1(BC171526|pid:none) Danio rerio si:rp71-10d23.3, mRNA ...    37   1.4
CP001080_123(CP001080|pid:none) Sulfurihydrogenibium sp. YO3AOP1...    37   1.4
AP006628_481(AP006628|pid:none) Onion yellows phytoplasma OY-M D...    37   1.4
AL844508_120(AL844508|pid:none) Plasmodium falciparum 3D7 chromo...    37   1.9
CP000713_1959(CP000713|pid:none) Psychrobacter sp. PRwf-1, compl...    37   1.9
CP000099_104(CP000099|pid:none) Methanosarcina barkeri str. Fusa...    37   1.9
AP009049_1815(AP009049|pid:none) Clostridium kluyveri NBRC 12016...    37   1.9
AF226280_49(AF226280|pid:none) Campylobacter jejuni 81-176 virul...    37   1.9
AE014186_397(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    37   1.9
AL035476_44(AL035476|pid:none) Plasmodium falciparum MAL4P3.  &A...    37   1.9
(Q9UTK5) RecName: Full=Abnormal long morphology protein 1; AltNa...    37   1.9
FM992695_278(FM992695|pid:none) Candida dubliniensis CD36 chromo...    37   1.9
CP000814_44(CP000814|pid:none) Campylobacter jejuni subsp. jejun...    36   2.5
U75357_1(U75357|pid:none) Schizosaccharomyces pombe myosin II (m...    36   2.5
AE014187_468(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    36   2.5
(Q9USI6) RecName: Full=Myosin type-2 heavy chain 1; AltName: Ful...    36   2.5
AL929353_66(AL929353|pid:none) Plasmodium falciparum strain 3D7,...    36   2.5
AL844507_259(AL844507|pid:none) Plasmodium falciparum 3D7 chromo...    36   2.5
CP000246_2515(CP000246|pid:none) Clostridium perfringens ATCC 13...    36   2.5
BX908798_399(BX908798|pid:none) Parachlamydia-related symbiont U...    36   2.5
AL844504_205(AL844504|pid:none) Plasmodium falciparum 3D7 chromo...    36   2.5
(Q6BMV4) RecName: Full=Signal recognition particle subunit SRP68...    36   2.5
(P30319) RecName: Full=DNA polymerase;          EC=2.7.7.7;  &S2...    36   3.2
BA000026_157(BA000026|pid:none) Mycoplasma penetrans HF-2 DNA, c...    36   3.2
AE001362_130(AE001362|pid:none) Plasmodium falciparum 3D7 chromo...    36   3.2
CP000727_1327(CP000727|pid:none) Clostridium botulinum A str. Ha...    36   3.2
AE014187_594(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    36   3.2
CP000395_35(CP000395|pid:none) Borrelia afzelii PKo, complete ge...    36   3.2
CP000742_1239(CP000742|pid:none) Methanococcus vannielii SB, com...    36   3.2
CP000728_1381(CP000728|pid:none) Clostridium botulinum F str. La...    36   3.2
CP001230_940(CP001230|pid:none) Persephonella marina EX-H1, comp...    36   3.2
CP001229_945(CP001229|pid:none) Sulfurihydrogenibium azorense Az...    36   3.2
CR380956_330(CR380956|pid:none) Candida glabrata strain CBS138 c...    36   3.2
BC134211_1(BC134211|pid:none) Danio rerio novel protein similar ...    36   3.2
AB193597_1(AB193597|pid:none) Plasmodium falciparum rhoph1/clag2...    35   4.2
AM295250_2338(AM295250|pid:none) Staphylococcus carnosus subsp. ...    35   4.2
AM180355_2790(AM180355|pid:none) Clostridium difficile 630 compl...    35   4.2
(Q9LW85) RecName: Full=MAR-binding filament-like protein 1;  &BT...    35   4.2
AB012247_4(AB012247|pid:none) Arabidopsis thaliana genomic DNA, ...    35   4.2
AL031746_4(AL031746|pid:none) Plasmodium falciparum DNA from MAL...    35   4.2
CP000867_1064(CP000867|pid:none) Methanococcus maripaludis C6, c...    35   4.2
CR380954_43(CR380954|pid:none) Candida glabrata strain CBS138 ch...    35   4.2
AM910996_176(AM910996|pid:none) Plasmodium knowlesi strain H chr...    35   4.2
AC183494_1(AC183494|pid:none) Brassica oleracea Contig C, comple...    35   4.2
CP000139_2135(CP000139|pid:none) Bacteroides vulgatus ATCC 8482,...    35   4.2
AE014186_199(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    35   4.2
CP001078_2653(CP001078|pid:none) Clostridium botulinum E3 str. A...    35   4.2
AL844508_198(AL844508|pid:none) Plasmodium falciparum 3D7 chromo...    35   4.2
AP009049_999(AP009049|pid:none) Clostridium kluyveri NBRC 12016 ...    35   4.2
CP000312_189(CP000312|pid:none) Clostridium perfringens SM101, c...    35   4.2
FM992689_883(FM992689|pid:none) Candida dubliniensis CD36 chromo...    35   4.2
B71602(B71602)probable secreted protein PFB0935w - malaria paras...    35   4.2
AL034558_15(AL034558|pid:none) Plasmodium falciparum MAL3P2, com...    35   4.2
CP000123_229(CP000123|pid:none) Mycoplasma capricolum subsp. cap...    35   5.5
CU633899_513(CU633899|pid:none) Podospora anserina genomic DNA c...    35   5.5
AL929359_19(AL929359|pid:none) Plasmodium falciparum strain 3D7,...    35   5.5
AE014187_250(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    35   5.5
CP001047_264(CP001047|pid:none) Mycoplasma arthritidis 158L3-1, ...    35   5.5
CR940348_171(CR940348|pid:none) Theileria annulata strain Ankara...    35   5.5
BA000026_156(BA000026|pid:none) Mycoplasma penetrans HF-2 DNA, c...    35   5.5
Z98547_25(Z98547|pid:none) Plasmodium falciparum MAL3P3, complet...    35   7.2
AB173880_1(AB173880|pid:none) Macaca fascicularis brain cDNA clo...    35   7.2
AK123761_1(AK123761|pid:none) Homo sapiens cDNA FLJ41767 fis, cl...    35   7.2
(Q8I3Z1) RecName: Full=MATH and LRR domain-containing protein PF...    35   7.2
AF533700_1(AF533700|pid:none) Plasmodium falciparum 3D7 normocyt...    35   7.2
(Q1ZXR2) RecName: Full=Probable serine/threonine-protein kinase ...    35   7.2
AE014187_126(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    35   7.2
AC116920_30(AC116920|pid:none) Dictyostelium discoideum chromoso...    35   7.2
FM992692_162(FM992692|pid:none) Candida dubliniensis CD36 chromo...    35   7.2
(Q2EEX5) RecName: Full=Uncharacterized membrane protein ycf78; A...    35   7.2
AM502254_65(AM502254|pid:none) Leishmania infantum chromosome 36.      35   7.2
CP000382_278(CP000382|pid:none) Clostridium novyi NT, complete g...    35   7.2
AL844502_99(AL844502|pid:none) Plasmodium falciparum 3D7 chromos...    35   7.2
Z75311_1(Z75311|pid:none) H.sapiens mRNA for RAD50.                    35   7.2
A64127(A64127)hypothetical protein HI1515 - Haemophilus influenz...    35   7.2
CP000771_933(CP000771|pid:none) Fervidobacterium nodosum Rt17-B1...    35   7.2
AM910996_572(AM910996|pid:none) Plasmodium knowlesi strain H chr...    35   7.2
CP000049_606(CP000049|pid:none) Borrelia turicatae 91E135, compl...    35   7.2
AL844503_21(AL844503|pid:none) Plasmodium falciparum 3D7 chromos...    35   7.2
(Q06704) RecName: Full=Golgin IMH1; AltName: Full=Integrins and ...    34   9.4
AL844509_497(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    34   9.4
AY040821_1(AY040821|pid:none) Loligo pealei non-muscle myosin II...    34   9.4
CP000102_880(CP000102|pid:none) Methanosphaera stadtmanae DSM 30...    34   9.4
CR382125_227(CR382125|pid:none) Kluyveromyces lactis strain NRRL...    34   9.4
AF411932_1(AF411932|pid:none) Plasmodium falciparum strain Malay...    34   9.4
AE014187_377(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    34   9.4
CP000524_589(CP000524|pid:none) Bartonella bacilliformis KC583, ...    34   9.4
(A7TM79) RecName: Full=Autophagy-related protein 2;                    34   9.4
CP000246_195(CP000246|pid:none) Clostridium perfringens ATCC 131...    34   9.4
CP000702_1028(CP000702|pid:none) Thermotoga petrophila RKU-1, co...    34   9.4
AF411929_1(AF411929|pid:none) Plasmodium falciparum strain FVO n...    34   9.4
CP000867_1319(CP000867|pid:none) Methanococcus maripaludis C6, c...    34   9.4
AY954970_59(AY954970|pid:none) Staphylococcus phage Twort, compl...    34   9.4
BA000016_216(BA000016|pid:none) Clostridium perfringens str. 13 ...    34   9.4
CP000115_2826(CP000115|pid:none) Nitrobacter winogradskyi Nb-255...    34   9.4
(Q9UTR7) RecName: Full=Meiotic coiled-coil protein 3; AltName: F...    34   9.4
AE015929_1131(AE015929|pid:none) Staphylococcus epidermidis ATCC...    34   9.4

>BC152635_1(BC152635|pid:none) Danio rerio signal recognition particle
            68, mRNA (cDNA clone MGC:173855 IMAGE:7450938), complete
            cds.  &BC160941_1(BC160941|pid:none)
          Length = 593

 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 84/357 (23%), Positives = 159/357 (44%), Gaps = 10/357 (2%)
 Frame = +3

Query: 105  IEWKSKSIKVDEKLDEKLKIFNEFKKENENKLPKNINASIDTTSNISPIFNIYDKLVYNL 284
            +EW+ +++ +  K+D K +IF     +NE        A+I    N     ++Y+ L+
Sbjct: 263  VEWRGRTVPI--KID-KARIFLLGLADNE--------AAITQADNEETKEHLYESLLAEC 311

Query: 285  INCETIVKNDLSTLVRVNLKNKSVKSEIEEQSTRILLAYIMYHKMKYLYERNSILITMMQ 464
             +    V+ +L T V+   +   V    +  + + L +Y+ Y K+  + +RN  +   +Q
Sbjct: 312  RDTIQAVREELRTDVKQRERATDVAESSKVSNLQYLHSYLTYIKLWTVVKRNESMAHSLQ 371

Query: 465  RVLDGEKVDESAIKKKVKKVTWNDLVRLSTHQVKVYTIMSESRDTDSNKEIARDQDAQLI 644
              L   + DE+    + +     DL+RL    ++    +S  +  + +    ++   + +
Sbjct: 372  TKLKEPQTDENKRGPRPQ-----DLIRLYDIILQSLAELSSLQGLEEDHTFQKELSLKTL 426

Query: 645  LLKSIRLYYIAVCLAKSLKFSETMAVLDRVLT---NIQNVRKTNTKNQQILNDTNELESN 815
            + K+ R +YIA       K+SE + + +RVL     +Q+  K+ + N + L D  EL +
Sbjct: 427  VYKAYRCFYIAQSYVLVKKWSEALVLYERVLKYTKEVQSKAKSLSNNLKDLPDVQELIAE 486

Query: 816  IKKQRSQIHANSFIQQLSENQDLKNQMSSLSIGGITTASGKSNDLISGLDSF--DTSFLT 989
            +  ++  + A + +    + +D+    S   I   T  S +       LD+F  D++ L+
Sbjct: 487  VNAEKYSLQAAAIL----DTEDIAELPSQQQIKDTTPLSDR-------LDNFRLDSNLLS 535

Query: 990  EK-KXXXXXXXXXXXXAKPIFFDLAFNSVTFPSLD----QRKKGSSTGTPSKGLFGF 1145
            ++               KP+FFDLA N V  P LD    Q+ KG   G   KG FGF
Sbjct: 536  KQPNLVQFPPDFQPIPCKPLFFDLALNHVVLPPLDDKVEQKGKGGIAGY-FKGFFGF 591

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,508,798,467
Number of extensions: 26276243
Number of successful extensions: 78352
Number of sequences better than 10.0: 161
Number of HSP's gapped: 78119
Number of HSP's successfully gapped: 167
Length of query: 411
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 280
Effective length of database: 627,191,635
Effective search space: 175613657800
Effective search space used: 175613657800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.75  gvh: 0.39  alm: 0.32  top: 0.53  tms: 0.07  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.02  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: nuclear
	 24.0 %: cytoplasmic
	 12.0 %: mitochondrial
	 12.0 %: endoplasmic reticulum
	  8.0 %: Golgi
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for Contig-U13906-1 is nuc
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0