Contig-U13885-1
Contig ID Contig-U13885-1
Contig update 2002.12.18
Contig sequence
>Contig-U13885-1 (Contig-U13885-1Q) /CSM_Contig/Contig-U13885-1Q.Seq.d
ACTGTTGGCCTACTGGATTTTATTTTATTTTACACACACTCACATAAATA
TACATATTTAAATAATAATAATAAATAAAAAAAAATAAAAAAATGAAAAA
ACAAATATTTTTTATTATTTTACTTTTTACATTTTTATTTTTTATTAATA
ATATAGAATCAAAGAATAATAGTGTACTTGGAAATTGTGAAAAGAATCAA
ACTGCAAAATATAAAAAGATATCATCCAAATATGGTAATGAAGAAATTAA
AGAGATTACAACCAATCAATTAAGCAAAGATCAACTTGAAAAACATGAAA
TGTTTATGAAGATTGCATTGGAAATAGCAATTAAAAGTAAAGTTAAATTC
GTTTCCATCATTGTATCACCAGATGATCGTGTACTTTGTTCAGGTATCTT
CTCAAAAGAGAATGCCATTCTTCATAGTGAATTGGTTGCCATTACAAATT
GCAGTTCGTCCCATAAAATGGTAACTTTTGAAAATCATACAATCTATAGT
ACTGCCGAACCAGATTCATTGTCTTCTTCTGCCATCGTATGGGCACGTTT
CAAACAAGTTGTCTATGGCTCTTCAATTAAACATCTCTATTGTAATGCTT
GCTTCTCAAGTTTACCAATTGATTCAACTTATATTTTCTCAAGAGGTTAT
GGTATTGGAGTTGAAAATATCCAATTGGTTGCTGGTGTTTTACAAGATCA
AACCGATGCAAACTTTGGTTCCTATTGTAATTCGTCAATATCTTCAGTTT
ATAAAACAAATCCACAATGTAAATGTAAAAATCCAAAATTATCAAAAGAA
AATACCAACAACAACGATGATGGTGATGATGATAACAAAAACCATCATCG
TCGTCATAGTCAAAATAATGAAATTGATGTTGATACTAAAAATGAAAGAA
ATCAACACCACCATGACAAAGATGATAGTATTGATAACTTTTTCGATGAA
ATAAAATCTGATGATGATTTTGATAAAAGAATTGAATCAGGTAAACAAGC
TGAAAAGTCAAAGAATAAAGAAAAAAAGAAACATCATTCTCACCATCACT
CTCACACTAGTAAAGATGGTCGTAGTAGAACAAGTACAAGTACAAGTATT
TCAGGTAATGGTCATGCAACTGCTTCTGCCTCTGCTTCTTCTTCTTCTTC
TTCTACTTCTTTCTCTCATTCTTCCTCTTCAAATGATCATCACCATAAAA
AGGATAAATCAAATAAAAACAAAGACAACAAAGAAAAAGGTGATAAAAAA
GATAAAAAAGATAAAAAAGAAAAGAAAGATAAGAAAAAAGATAAAAAAGA
TAAATCAACCTCTGTAGAAGAAGAAATCAATACCTTAAAAGTCGAAAAGA
ATTCAATTTAAAATTTTATTAAAATAAATTTAAAAGTATTTTTTAT

Gap no gap
Contig length 1396
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 4152946
End point 4154343
Strand (PLUS/MINUS) PLUS
Number of clones 25
Number of EST 43
Link to clone list U13885
List of clone(s)

est1=AFK271F,1,566
est2=VFH877F,2,264
est3=VFB765F,6,434
est4=SFG631F,11,574
est5=CFH108F,13,119
est6=SFJ787F,14,641
est7=AFL225F,16,516
est8=AFE746E,22,1239
est9=AFG560F,22,488
est10=AFJ609F,22,603
est11=AFJ852F,22,588
est12=CHE494F,22,564
est13=AFI438F,24,455
est14=AFE567F,28,422
est15=SFJ362F,32,601
est16=SLC561F,80,716
est17=SFH820F,98,586
est18=CFA364F,172,752
est19=SSD787E,489,1395
est20=SLA314F,618,964
est21=AFK271Z,641,1368
est22=CFH108Z,644,1388
est23=VFB765Z,645,1251
est24=SFJ362Z,682,1390
est25=AFJ609Z,683,1368
est26=VFH877Z,684,1391
est27=AFE567Z,689,1390
est28=SFJ787Z,691,1390
est29=VSA102Z,691,1286
est30=CFA364Z,721,1368
est31=AFI438Z,725,1361
est32=SFH820Z,725,1390
est33=AFJ852Z,727,1366
est34=CHE494Z,731,1363
est35=AFG560Z,733,1368
est36=AFL225Z,767,1390
est37=VSH413Z,796,1397
est38=VSH413F,808,1384
est39=AFE852Z,816,1368
est40=SLC561Z,890,1397
est41=AFC338Z,947,1369
est42=SLA314Z,1029,1231
est43=VFK354Z,1228,1358
Translated Amino Acid sequence
cwptgfyfilhtlt*iyifk****IKKNKKMKKQIFFIILLFTFLFFINNIESKNNSVLG
NCEKNQTAKYKKISSKYGNEEIKEITTNQLSKDQLEKHEMFMKIALEIAIKSKVKFVSII
VSPDDRVLCSGIFSKENAILHSELVAITNCSSSHKMVTFENHTIYSTAEPDSLSSSAIVW
ARFKQVVYGSSIKHLYCNACFSSLPIDSTYIFSRGYGIGVENIQLVAGVLQDQTDANFGS
YCNSSISSVYKTNPQCKCKNPKLSKENTNNNDDGDDDNKNHHRRHSQNNEIDVDTKNERN
QHHHDKDDSIDNFFDEIKSDDDFDKRIESGKQAEKSKNKEKKKHHSHHHSHTSKDGRSRT
STSTSISGNGHATASASASSSSSSTSFSHSSSSNDHHHKKDKSNKNKDNKEKGDKKDKKD
KKEKKDKKKDKKDKSTSVEEEINTLKVEKNSI*nfikinlkvff


Translated Amino Acid sequence (All Frames)
Frame A:
tvglldfilfythshkytylnnnnk*kkikk*knkyfllfyflhfyfllii*nqriivyl
eivkriklqnikryhpnmvmkklkrlqpin*akinlknmkcl*rlhwk*qlkvklnsfps
lyhqmivyfvqvssqkrmpffivnwlplqiavrpikw*llkiiqsivlpnqihclllpsy
ghvsnklsmalqlnisivmlasqvyqliqlifsqevmvlelkisnwllvfykikpmqtlv
pivirqylqfikqihnvnvkiqnyqkkiptttmmvmmitktiivvivkimklmlilkmke
inttmtkmivlitfsmk*nlmmilikelnqvnklksqrikkkrniiltitltlvkmvvve
qvqvqvfqvmvmqlllpllllllllllslilplqmiitikrinqiktkttkkkvikkikk
ikkkrkirkkikkinqpl*kkksip*kskriqfkillk*i*kyfl


Frame B:
llaywilfyfththinihi*iiiinkkk*knektnifyyftfyifify**yrike**ctw
kl*kesncki*kdiiqiw**rn*rdynqsikqrst*kt*nvyedcignsn*k*s*irfhh
citr*sctlfryllkrechss**igchyklqfvp*ngnf*ksynl*ycrtrfivffchrm
gtfqtsclwlfn*tsll*clllkftn*fnlyflkrlwyws*kypigcwcftrsnrcklwf
ll*fvnifsl*nkstm*m*kskiikrkyqqqr*w****qkpssss*sk**n*c*y*k*kk
stpp*qr**y**lfr*nki***f**kn*ir*ts*kvke*rkketsfspslsh**rws**n
kykykyfr*wscncfclcffffffyfflsfflfk*ssp*kg*ik*kqrqqrkr**kr*kr
*krker*ekr*kr*inlcrrrnqylksrkefnlkfy*nkfksify


Frame C:
cwptgfyfilhtlt*iyifk****IKKNKKMKKQIFFIILLFTFLFFINNIESKNNSVLG
NCEKNQTAKYKKISSKYGNEEIKEITTNQLSKDQLEKHEMFMKIALEIAIKSKVKFVSII
VSPDDRVLCSGIFSKENAILHSELVAITNCSSSHKMVTFENHTIYSTAEPDSLSSSAIVW
ARFKQVVYGSSIKHLYCNACFSSLPIDSTYIFSRGYGIGVENIQLVAGVLQDQTDANFGS
YCNSSISSVYKTNPQCKCKNPKLSKENTNNNDDGDDDNKNHHRRHSQNNEIDVDTKNERN
QHHHDKDDSIDNFFDEIKSDDDFDKRIESGKQAEKSKNKEKKKHHSHHHSHTSKDGRSRT
STSTSISGNGHATASASASSSSSSTSFSHSSSSNDHHHKKDKSNKNKDNKEKGDKKDKKD
KKEKKDKKKDKKDKSTSVEEEINTLKVEKNSI*nfikinlkvff


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U13885-1 (Contig-U13885-1Q)
/CSM_Contig/Contig-U13885-1Q.Seq.d
(1396 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U13885-1 (Contig-U13885-1Q) /CSM_Contig/Conti... 1203 0.0
Contig-U14258-1 (Contig-U14258-1Q) /CSM_Contig/Conti... 48 3e-05
Contig-U00133-1 (Contig-U00133-1Q) /CSM_Contig/Conti... 48 3e-05
Contig-U12553-1 (Contig-U12553-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U11671-1 (Contig-U11671-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U11650-1 (Contig-U11650-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U10320-1 (Contig-U10320-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U14458-1 (Contig-U14458-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U14188-1 (Contig-U14188-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U14174-1 (Contig-U14174-1Q) /CSM_Contig/Conti... 42 0.002

>Contig-U13885-1 (Contig-U13885-1Q) /CSM_Contig/Contig-U13885-1Q.Seq.d
Length = 1396

Score = 1203 bits (607), Expect = 0.0
Identities = 607/607 (100%)
Strand = Plus / Plus


Query: 144 attaataatatagaatcaaagaataatagtgtacttggaaattgtgaaaagaatcaaact 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 attaataatatagaatcaaagaataatagtgtacttggaaattgtgaaaagaatcaaact 203


Query: 204 gcaaaatataaaaagatatcatccaaatatggtaatgaagaaattaaagagattacaacc 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gcaaaatataaaaagatatcatccaaatatggtaatgaagaaattaaagagattacaacc 263


Query: 264 aatcaattaagcaaagatcaacttgaaaaacatgaaatgtttatgaagattgcattggaa 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aatcaattaagcaaagatcaacttgaaaaacatgaaatgtttatgaagattgcattggaa 323


Query: 324 atagcaattaaaagtaaagttaaattcgtttccatcattgtatcaccagatgatcgtgta 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atagcaattaaaagtaaagttaaattcgtttccatcattgtatcaccagatgatcgtgta 383


Query: 384 ctttgttcaggtatcttctcaaaagagaatgccattcttcatagtgaattggttgccatt 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctttgttcaggtatcttctcaaaagagaatgccattcttcatagtgaattggttgccatt 443


Query: 444 acaaattgcagttcgtcccataaaatggtaacttttgaaaatcatacaatctatagtact 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acaaattgcagttcgtcccataaaatggtaacttttgaaaatcatacaatctatagtact 503


Query: 504 gccgaaccagattcattgtcttcttctgccatcgtatgggcacgtttcaaacaagttgtc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gccgaaccagattcattgtcttcttctgccatcgtatgggcacgtttcaaacaagttgtc 563


Query: 564 tatggctcttcaattaaacatctctattgtaatgcttgcttctcaagtttaccaattgat 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tatggctcttcaattaaacatctctattgtaatgcttgcttctcaagtttaccaattgat 623


Query: 624 tcaacttatattttctcaagaggttatggtattggagttgaaaatatccaattggttgct 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tcaacttatattttctcaagaggttatggtattggagttgaaaatatccaattggttgct 683


Query: 684 ggtgttttacaagatcaaaccgatgcaaactttggttcctattgtaattcgtcaatatct 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ggtgttttacaagatcaaaccgatgcaaactttggttcctattgtaattcgtcaatatct 743


Query: 744 tcagttt 750
|||||||
Sbjct: 744 tcagttt 750


Score = 591 bits (298), Expect = e-169
Identities = 312/319 (97%)
Strand = Plus / Plus


Query: 804 accaacaacaacgatgatggtgatgatgataacaaaaaccatcatcgtcgtcatagtcaa 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 accaacaacaacgatgatggtgatgatgataacaaaaaccatcatcgtcgtcatagtcaa 863


Query: 864 aataatgaaattgatgttgatactaaaaatgaaagaaatcaacaccaccatgacaaagat 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 aataatgaaattgatgttgatactaaaaatgaaagaaatcaacaccaccatgacaaagat 923


Query: 924 gatagtattgataactttttcgatgaaataaaatctgatgatgattttgataaaagaatt 983
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 gatagtattgataactttttcgatgaaataaaatctgatgatgattttgataaaagaatt 983


Query: 984 gaatcaggtaaacaagctgaaaagtcaaagaataaagnnnnnnngaaacatcattctcac 1043
||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 984 gaatcaggtaaacaagctgaaaagtcaaagaataaagaaaaaaagaaacatcattctcac 1043


Query: 1044 catcactctcacactagtaaagatggtcgtagtagaacaagtacaagtacaagtatttca 1103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1044 catcactctcacactagtaaagatggtcgtagtagaacaagtacaagtacaagtatttca 1103


Query: 1104 ggtaatggtcatgcaactg 1122
|||||||||||||||||||
Sbjct: 1104 ggtaatggtcatgcaactg 1122


Score = 151 bits (76), Expect = 2e-36
Identities = 76/76 (100%)
Strand = Plus / Plus


Query: 1 actgttggcctactggattttattttattttacacacactcacataaatatacatattta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 actgttggcctactggattttattttattttacacacactcacataaatatacatattta 60


Query: 61 aataataataataaat 76
||||||||||||||||
Sbjct: 61 aataataataataaat 76


Score = 69.9 bits (35), Expect = 7e-12
Identities = 35/35 (100%)
Strand = Plus / Plus


Query: 1299 gataaatcaacctctgtagaagaagaaatcaatac 1333
|||||||||||||||||||||||||||||||||||
Sbjct: 1299 gataaatcaacctctgtagaagaagaaatcaatac 1333


>Contig-U14258-1 (Contig-U14258-1Q) /CSM_Contig/Contig-U14258-1Q.Seq.d
Length = 1199

Score = 48.1 bits (24), Expect = 3e-05
Identities = 31/32 (96%), Gaps = 1/32 (3%)
Strand = Plus / Plus


Query: 1 actgttggcctactggatt-ttattttatttt 31
||||||||||||||||||| ||||||||||||
Sbjct: 1 actgttggcctactggattattattttatttt 32


>Contig-U00133-1 (Contig-U00133-1Q) /CSM_Contig/Contig-U00133-1Q.Seq.d
Length = 819

Score = 48.1 bits (24), Expect = 3e-05
Identities = 29/31 (93%)
Strand = Plus / Plus


Query: 2 ctgttggcctactggattttattttatttta 32
||||||||||||||| || ||||||||||||
Sbjct: 1 ctgttggcctactggcttntattttatttta 31


Score = 30.2 bits (15), Expect = 6.1
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 17 attttattttatttt 31
|||||||||||||||
Sbjct: 21 attttattttatttt 35


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 35,937
Number of Sequences: 6905
Number of extensions: 35937
Number of successful extensions: 13312
Number of sequences better than 10.0: 1905
length of query: 1396
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1380
effective length of database: 5,564,391
effective search space: 7678859580
effective search space used: 7678859580
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.14
Homology vs DNA
Query= Contig-U13885-1 (Contig-U13885-1Q) /CSM_Contig/Contig-U13885-1Q.Seq.d
(1396 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ358476) Dictyostelium discoideum cDNA clone:ddc1p15, 5' e... 1146 0.0 1
(AU060998) Dictyostelium discoideum slug cDNA, clone SLC561. 942 0.0 2
(BJ339793) Dictyostelium discoideum cDNA clone:dda10l11, 3' ... 535 0.0 3
(BJ390031) Dictyostelium discoideum cDNA clone:dds20n21, 5' ... 979 0.0 2
(BJ327312) Dictyostelium discoideum cDNA clone:dda20a04, 5' ... 902 0.0 2
(BJ389673) Dictyostelium discoideum cDNA clone:dds19l15, 5' ... 892 0.0 1
(BJ327477) Dictyostelium discoideum cDNA clone:dda20h14, 5' ... 872 0.0 2
(BJ327764) Dictyostelium discoideum cDNA clone:dda21m18, 5' ... 829 0.0 2
(BJ390961) Dictyostelium discoideum cDNA clone:dds14m08, 5' ... 846 0.0 2
(BJ364229) Dictyostelium discoideum cDNA clone:ddc30l24, 5' ... 827 0.0 2
(BJ388751) Dictyostelium discoideum cDNA clone:dds16h06, 5' ... 837 0.0 1
(BJ323400) Dictyostelium discoideum cDNA clone:dda10l11, 5' ... 807 0.0 2
(BJ345119) Dictyostelium discoideum cDNA clone:dda21m18, 3' ... 406 0.0 5
(BJ372976) Dictyostelium discoideum cDNA clone:ddc15o01, 3' ... 398 0.0 5
(BJ328178) Dictyostelium discoideum cDNA clone:dda23a08, 5' ... 729 0.0 2
(BJ344636) Dictyostelium discoideum cDNA clone:dda20a04, 3' ... 406 0.0 5
(BJ401864) Dictyostelium discoideum cDNA clone:dds19l15, 3' ... 406 0.0 5
(BJ434440) Dictyostelium discoideum cDNA clone:ddv16j20, 3' ... 406 0.0 5
(BJ429673) Dictyostelium discoideum cDNA clone:ddv4b17, 3' e... 400 0.0 5
(BJ339826) Dictyostelium discoideum cDNA clone:dda10e17, 3' ... 406 0.0 5
(BJ402239) Dictyostelium discoideum cDNA clone:dds20n21, 3' ... 406 0.0 5
(AU261277) Dictyostelium discoideum vegetative cDNA clone:VS... 406 0.0 4
(BJ325449) Dictyostelium discoideum cDNA clone:dda14g15, 5' ... 650 0.0 2
(BJ371844) Dictyostelium discoideum cDNA clone:ddc1p15, 3' e... 406 e-174 5
(BJ343853) Dictyostelium discoideum cDNA clone:dda17l10, 3' ... 406 e-173 5
(BJ344816) Dictyostelium discoideum cDNA clone:dda20h14, 3' ... 406 e-171 5
(BJ402282) Dictyostelium discoideum cDNA clone:dds16h06, 3' ... 406 e-170 5
(BJ326644) Dictyostelium discoideum cDNA clone:dda17l10, 5' ... 601 e-169 2
(BJ342554) Dictyostelium discoideum cDNA clone:dda14g15, 3' ... 406 e-168 5
(BJ376989) Dictyostelium discoideum cDNA clone:ddc30l24, 3' ... 400 e-165 5
(BJ345288) Dictyostelium discoideum cDNA clone:dda23a08, 3' ... 406 e-162 4
(AU267408) Dictyostelium discoideum vegetative cDNA clone:VS... 406 e-160 4
(AU267409) Dictyostelium discoideum vegetative cDNA clone:VS... 398 e-160 4
(BJ411454) Dictyostelium discoideum cDNA clone:ddv4b17, 5' e... 549 e-159 2
(BJ339834) Dictyostelium discoideum cDNA clone:dda10h14, 3' ... 392 e-158 4
(AU037560) Dictyostelium discoideum slug cDNA, clone SSD787. 392 e-158 4
(BJ323431) Dictyostelium discoideum cDNA clone:dda10e17, 5' ... 543 e-151 2
(AU060102) Dictyostelium discoideum slug cDNA, clone SLA314. 295 e-148 2
(AU072234) Dictyostelium discoideum slug cDNA, clone SSD787. 476 e-129 1
(AU034311) Dictyostelium discoideum slug cDNA, clone SLC561. 246 e-114 4
(BJ341141) Dictyostelium discoideum cDNA clone:dda5l09, 3' e... 188 4e-83 4
(BJ413760) Dictyostelium discoideum cDNA clone:ddv16j20, 5' ... 182 2e-54 4
(AU040046) Dictyostelium discoideum slug cDNA, clone SLA314. 176 1e-39 1
(BJ414247) Dictyostelium discoideum cDNA clone:ddv18d15, 5' ... 64 2e-05 1
(BJ411745) Dictyostelium discoideum cDNA clone:ddv5k18, 5' e... 62 6e-05 1
(BJ387855) Dictyostelium discoideum cDNA clone:dds5o08, 5' e... 60 2e-04 1
(BJ327585) Dictyostelium discoideum cDNA clone:dda21a02, 5' ... 54 0.003 2
(BJ389142) Dictyostelium discoideum cDNA clone:dds17l16, 5' ... 56 0.004 1
(BJ327473) Dictyostelium discoideum cDNA clone:dda20g13, 5' ... 42 0.013 2
(EB312566) CNSN01-F-076331-501 Normalized CNS library (juven... 54 0.015 1
(BJ387770) Dictyostelium discoideum cDNA clone:dds4g23, 5' e... 54 0.015 1
(BJ363853) Dictyostelium discoideum cDNA clone:ddc28g20, 5' ... 54 0.015 1
(BJ362987) Dictyostelium discoideum cDNA clone:ddc24p08, 5' ... 54 0.015 1
(BJ359521) Dictyostelium discoideum cDNA clone:ddc15o01, 5' ... 54 0.015 1
(BJ415751) Dictyostelium discoideum cDNA clone:ddv23i15, 5' ... 42 0.047 2
(BJ325713) Dictyostelium discoideum cDNA clone:dda1j04, 5' e... 38 0.048 2
(CU075915) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 52 0.058 1
(CU041241) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 52 0.058 1
(BJ325565) Dictyostelium discoideum cDNA clone:dda1m11, 5' e... 52 0.058 1
(CU862014) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 40 0.14 2
(CR381597) Zebrafish DNA sequence from clone CH211-182L5 in ... 40 0.15 2
(AB017910) Dictyostelium discoideum myoM gene, complete cds. 38 0.16 2
(AF090533) Dictyostelium discoideum unconventional myosin he... 38 0.16 2
(DC240635) Petunia x hybrida cDNA, clone: PET04SEQ02208C. 44 0.17 2
(BJ415928) Dictyostelium discoideum cDNA clone:ddv24o04, 5' ... 38 0.17 2
(CJ489042) Macaca fascicularis mRNA, clone: QtsA-16775, 5' e... 50 0.23 1
(CJ489015) Macaca fascicularis mRNA, clone: QtsA-16748, 5' e... 50 0.23 1
(CJ489014) Macaca fascicularis mRNA, clone: QtsA-16747, 5' e... 50 0.23 1
(CJ489006) Macaca fascicularis mRNA, clone: QtsA-16739, 5' e... 50 0.23 1
(CJ465147) Macaca fascicularis mRNA, clone: QnpA-14172, 5' e... 50 0.23 1
(CR847783) Zebrafish DNA sequence from clone DKEYP-2C8 in li... 38 0.36 4
(AC026891) Mus musculus strain C57BL6/J chromosome 6 clone R... 40 0.38 5
(EY305420) CAWX19362.fwd CAWX Helobdella robusta Primary Ear... 36 0.63 3
(EY337878) CAWY863.fwd CAWY Helobdella robusta Subtracted Ea... 36 0.64 2
(EY350106) CAWZ17414.fwd CAWZ Helobdella robusta Primary Lat... 36 0.64 2
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975... 38 0.76 6
(CS752579) Sequence 20575 from Patent WO2005083127. 48 0.90 1
(CS741899) Sequence 9895 from Patent WO2005083127. 48 0.90 1
(DQ496101) Homo sapiens cytochrome b reductase 1 (CYBRD1) ge... 48 0.90 1
(AC007969) Homo sapiens BAC clone RP11-471A5 from 2, complet... 48 0.90 1
(CK091717) F120P43.3pR Populus flower cDNA library Populus t... 48 0.90 1
(BJ416069) Dictyostelium discoideum cDNA clone:ddv24e23, 5' ... 48 0.90 1
(BJ386726) Dictyostelium discoideum cDNA clone:dds10h11, 5' ... 48 0.90 1
(BJ363881) Dictyostelium discoideum cDNA clone:ddc28o20, 5' ... 48 0.90 1
(BJ326284) Dictyostelium discoideum cDNA clone:dda15m05, 5' ... 48 0.90 1
(BJ324243) Dictyostelium discoideum cDNA clone:dda5o07, 5' e... 48 0.90 1
(FD757511) Afi04_171_F01_C014.g1 Aristolochia fimbriata flow... 38 0.95 2
(FD757205) Afi04_164_E03_C014.g1 Aristolochia fimbriata flow... 38 0.95 2
(FD759403) Afi04_199_G12_C014.g1 Aristolochia fimbriata flow... 38 1.00 2
(FD751575) Afi04_79_B05_C014.g1 Aristolochia fimbriata flowe... 38 1.0 2
(AC128518) Rattus norvegicus clone CH230-217M24, *** SEQUENC... 38 1.0 5
(AC216215) Macaca mulatta chromosome UNKNOWN clone CH250-222... 36 1.6 5
(AC179609) Strongylocentrotus purpuratus clone R3-1028L19, W... 36 1.8 2
(AC180806) Strongylocentrotus purpuratus clone R3-3071I04, W... 36 1.8 2
(AC180074) Strongylocentrotus purpuratus clone R3-3001B09, W... 36 1.8 2
(AC178079) Strongylocentrotus purpuratus clone R3-3059O13, W... 36 1.9 2
(CI000208) Oryza sativa Japonica Group cDNA, clone: 003-M004... 38 2.0 2
(AL358034) Human DNA sequence from clone RP11-51K14 on chrom... 38 2.0 3
(CI053679) Oryza sativa Japonica Group cDNA, clone: 013-M020... 38 2.1 2
(BJ369909) Dictyostelium discoideum cDNA clone:ddc52p08, 5' ... 32 2.4 2

>(BJ358476) Dictyostelium discoideum cDNA clone:ddc1p15, 5' end,
single read.
Length = 581

Score = 1146 bits (578), Expect = 0.0
Identities = 580/581 (99%)
Strand = Plus / Plus


Query: 172 gtgtacttggaaattgtgaaaagaatcaaactgcaaaatataaaaagatatcatccaaat 231
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1 gtgtacttggaaattgtgaaaagaatnaaactgcaaaatataaaaagatatcatccaaat 60


Query: 232 atggtaatgaagaaattaaagagattacaaccaatcaattaagcaaagatcaacttgaaa 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atggtaatgaagaaattaaagagattacaaccaatcaattaagcaaagatcaacttgaaa 120


Query: 292 aacatgaaatgtttatgaagattgcattggaaatagcaattaaaagtaaagttaaattcg 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aacatgaaatgtttatgaagattgcattggaaatagcaattaaaagtaaagttaaattcg 180


Query: 352 tttccatcattgtatcaccagatgatcgtgtactttgttcaggtatcttctcaaaagaga 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tttccatcattgtatcaccagatgatcgtgtactttgttcaggtatcttctcaaaagaga 240


Query: 412 atgccattcttcatagtgaattggttgccattacaaattgcagttcgtcccataaaatgg 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atgccattcttcatagtgaattggttgccattacaaattgcagttcgtcccataaaatgg 300


Query: 472 taacttttgaaaatcatacaatctatagtactgccgaaccagattcattgtcttcttctg 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 taacttttgaaaatcatacaatctatagtactgccgaaccagattcattgtcttcttctg 360


Query: 532 ccatcgtatgggcacgtttcaaacaagttgtctatggctcttcaattaaacatctctatt 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ccatcgtatgggcacgtttcaaacaagttgtctatggctcttcaattaaacatctctatt 420


Query: 592 gtaatgcttgcttctcaagtttaccaattgattcaacttatattttctcaagaggttatg 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gtaatgcttgcttctcaagtttaccaattgattcaacttatattttctcaagaggttatg 480


Query: 652 gtattggagttgaaaatatccaattggttgctggtgttttacaagatcaaaccgatgcaa 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gtattggagttgaaaatatccaattggttgctggtgttttacaagatcaaaccgatgcaa 540


Query: 712 actttggttcctattgtaattcgtcaatatcttcagtttat 752
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 actttggttcctattgtaattcgtcaatatcttcagtttat 581

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,252,387,235
Number of extensions: 80571085
Number of successful extensions: 8325082
Number of sequences better than 10.0: 199
Length of query: 1396
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1372
Effective length of database: 97,308,875,965
Effective search space: 133507777823980
Effective search space used: 133507777823980
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 8
Homology vs Protein
Query= Contig-U13885-1 (Contig-U13885-1Q) /CSM_Contig/Contig-U13885-1Q.Seq.d
(1396 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC116977_84(AC116977|pid:none) Dictyostelium discoideum chromoso... 152 3e-35
AC116032_1(AC116032|pid:none) Dictyostelium discoideum chromosom... 130 1e-28
EF591889_14(EF591889|pid:none) Uncultured planctomycete 13FN clo... 60 1e-07
CU633453_11(CU633453|pid:none) Podospora anserina genomic DNA ch... 59 3e-07
AY710429_3(AY710429|pid:none) Cryptococcus gattii strain E566 MA... 58 9e-07
CU633897_23(CU633897|pid:none) Podospora anserina genomic DNA ch... 57 1e-06
AY710430_3(AY710430|pid:none) Cryptococcus gattii strain WM276 M... 57 2e-06
CP000117_2025(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 54 1e-05
CP001037_2059(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 54 1e-05
CP000764_16(CP000764|pid:none) Bacillus cereus subsp. cytotoxis ... 53 2e-05
AF542530_3(AF542530|pid:none) Cryptococcus neoformans var. neofo... 53 3e-05
AF542528_3(AF542528|pid:none) Cryptococcus neoformans var. grubi... 52 4e-05
CP001161_233(CP001161|pid:none) Buchnera aphidicola str. 5A (Acy... 51 9e-05
AB2385(AB2385) hypothetical protein alr4634 [imported] - Nostoc ... 51 9e-05
CP001229_148(CP001229|pid:none) Sulfurihydrogenibium azorense Az... 51 1e-04
CR628336_187(CR628336|pid:none) Legionella pneumophila str. Pari... 50 1e-04
CT573071_1129(CT573071|pid:none) Kuenenia stuttgartiensis genome... 50 2e-04
CP000634_69(CP000634|pid:none) Agrobacterium vitis S4 chromosome... 50 2e-04
AP009484_1852(AP009484|pid:none) Macrococcus caseolyticus JCSC54... 50 3e-04
(P57343) RecName: Full=Uncharacterized protein BU255; &BA000003... 49 3e-04
CP001139_636(CP001139|pid:none) Vibrio fischeri MJ11 chromosome ... 49 6e-04
AJ616007_1(AJ616007|pid:none) Candida albicans fca1 gene for put... 48 0.001
CP000557_15(CP000557|pid:none) Geobacillus thermodenitrificans N... 48 0.001
CP001615_1703(CP001615|pid:none) Exiguobacterium sp. AT1b, compl... 48 0.001
AE016827_404(AE016827|pid:none) Mannheimia succiniciproducens MB... 47 0.001
CP000087_1426(CP000087|pid:none) Rickettsia bellii RML369-C, com... 47 0.001
CP000903_17(CP000903|pid:none) Bacillus weihenstephanensis KBAB4... 47 0.002
CP000227_18(CP000227|pid:none) Bacillus cereus Q1, complete geno... 47 0.002
AE017194_19(AE017194|pid:none) Bacillus cereus ATCC 10987, compl... 47 0.002
BA000028_26(BA000028|pid:none) Oceanobacillus iheyensis HTE831 D... 47 0.002
AE016877_16(AE016877|pid:none) Bacillus cereus ATCC 14579, compl... 46 0.003
CP001230_149(CP001230|pid:none) Persephonella marina EX-H1, comp... 46 0.003
CP000671_1313(CP000671|pid:none) Haemophilus influenzae PittEE, ... 46 0.003
CP001176_17(CP001176|pid:none) Bacillus cereus B4264, complete g... 46 0.003
AP006716_2434(AP006716|pid:none) Staphylococcus haemolyticus JCS... 46 0.004
CP000020_644(CP000020|pid:none) Vibrio fischeri ES114 chromosome... 46 0.004
BA000040_6153(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 46 0.004
(P44931) RecName: Full=tRNA-specific adenosine deaminase; ... 46 0.004
AE016879_17(AE016879|pid:none) Bacillus anthracis str. Ames, com... 45 0.005
CP000411_1170(CP000411|pid:none) Oenococcus oeni PSU-1, complete... 45 0.006
AE009948_398(AE009948|pid:none) Streptococcus agalactiae 2603V/R... 45 0.006
CP000494_1947(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl... 45 0.008
CP000612_17(CP000612|pid:none) Desulfotomaculum reducens MI-1, c... 45 0.008
AP009179_1183(AP009179|pid:none) Sulfurovum sp. NBC37-1 genomic ... 45 0.008
CP000510_3140(CP000510|pid:none) Psychromonas ingrahamii 37, com... 44 0.011
CP001227_630(CP001227|pid:none) Rickettsia peacockii str. Rustic... 44 0.014
(Q9ZCC6) RecName: Full=Uncharacterized deaminase RP831; ... 44 0.014
CP000512_1061(CP000512|pid:none) Acidovorax citrulli AAC00-1, co... 44 0.014
CP000499_103(CP000499|pid:none) Pichia stipitis CBS 6054 chromos... 44 0.014
AM295250_220(AM295250|pid:none) Staphylococcus carnosus subsp. c... 44 0.014
CP001080_490(CP001080|pid:none) Sulfurihydrogenibium sp. YO3AOP1... 44 0.014
CP001612_965(CP001612|pid:none) Rickettsia africae ESF-5, comple... 44 0.014
CP000766_1295(CP000766|pid:none) Rickettsia rickettsii str. Iowa... 44 0.014
CU207366_3417(CU207366|pid:none) Gramella forsetii KT0803 comple... 44 0.014
CP001001_4726(CP001001|pid:none) Methylobacterium radiotolerans ... 44 0.018
(Q92G39) RecName: Full=Uncharacterized deaminase RC1285; ... 44 0.018
CP000252_76(CP000252|pid:none) Syntrophus aciditrophicus SB, com... 44 0.018
AE014133_275(AE014133|pid:none) Streptococcus mutans UA159, comp... 44 0.018
AE006914_1285(AE006914|pid:none) Rickettsia conorii str. Malish ... 44 0.018
CP000300_201(CP000300|pid:none) Methanococcoides burtonii DSM 62... 44 0.018
T31613(T31613)hypothetical protein Y50E8A.i - Caenorhabditis ele... 43 0.024
CP000001_17(CP000001|pid:none) Bacillus cereus E33L, complete ge... 43 0.024
CP000053_1319(CP000053|pid:none) Rickettsia felis URRWXCal2, com... 43 0.024
CP000847_1174(CP000847|pid:none) Rickettsia akari str. Hartford,... 43 0.024
CP000606_1296(CP000606|pid:none) Shewanella loihica PV-4, comple... 43 0.031
CP000474_1497(CP000474|pid:none) Arthrobacter aurescens TC1, com... 43 0.031
AP004728_14(AP004728|pid:none) Oryza sativa Japonica Group genom... 43 0.031
(Q4UJW9) RecName: Full=Uncharacterized deaminase RF_1319; ... 43 0.031
CP000817_20(CP000817|pid:none) Lysinibacillus sphaericus C3-41, ... 42 0.041
CP001071_799(CP001071|pid:none) Akkermansia muciniphila ATCC BAA... 42 0.041
CU234118_4115(CU234118|pid:none) Bradyrhizobium sp. ORS278,compl... 42 0.041
CP000687_531(CP000687|pid:none) Actinobacillus pleuropneumoniae ... 42 0.041
CP000859_2895(CP000859|pid:none) Desulfococcus oleovorans Hxd3, ... 42 0.041
CP001102_213(CP001102|pid:none) Candidatus Amoebophilus asiaticu... 42 0.053
CP001107_295(CP001107|pid:none) Eubacterium rectale ATCC 33656, ... 42 0.053
CP000233_1214(CP000233|pid:none) Lactobacillus salivarius UCC118... 42 0.053
CP000806_1272(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 42 0.053
GM956650_1(GM956650|pid:none) Sequence 3604 from Patent WO200814... 42 0.053
CP000975_40(CP000975|pid:none) Methylacidiphilum infernorum V4, ... 42 0.070
BA000022_1186(BA000022|pid:none) Synechocystis sp. PCC 6803 DNA,... 42 0.070
CP001147_1335(CP001147|pid:none) Thermodesulfovibrio yellowstoni... 42 0.070
CP001103_1387(CP001103|pid:none) Alteromonas macleodii 'Deep eco... 42 0.070
CP000009_774(CP000009|pid:none) Gluconobacter oxydans 621H, comp... 42 0.070
CP000961_1547(CP000961|pid:none) Shewanella woodyi ATCC 51908, c... 41 0.091
CP000949_2050(CP000949|pid:none) Pseudomonas putida W619, comple... 41 0.091
GM956826_1(GM956826|pid:none) Sequence 3780 from Patent WO200814... 41 0.091
CP000001_4558(CP000001|pid:none) Bacillus cereus E33L, complete ... 41 0.091
CP000304_2840(CP000304|pid:none) Pseudomonas stutzeri A1501, com... 41 0.091
CP001393_2297(CP001393|pid:none) Anaerocellum thermophilum DSM 6... 41 0.091
AE010299_3320(AE010299|pid:none) Methanosarcina acetivorans str.... 41 0.091
CP001111_2425(CP001111|pid:none) Stenotrophomonas maltophilia R5... 41 0.12
CP000474_760(CP000474|pid:none) Arthrobacter aurescens TC1, comp... 40 0.16
AE014299_3202(AE014299|pid:none) Shewanella oneidensis MR-1, com... 40 0.16
AM286690_821(AM286690|pid:none) Alcanivorax borkumensis SK2, com... 40 0.16
CP000447_1129(CP000447|pid:none) Shewanella frigidimarina NCIMB ... 40 0.16
CP001339_1019(CP001339|pid:none) Thioalkalivibrio sp. HL-EbGR7, ... 40 0.16
CP000680_3394(CP000680|pid:none) Pseudomonas mendocina ymp, comp... 40 0.20
CP000482_2230(CP000482|pid:none) Pelobacter propionicus DSM 2379... 40 0.20
CP001098_2062(CP001098|pid:none) Halothermothrix orenii H 168, c... 40 0.20
CP000885_3849(CP000885|pid:none) Clostridium phytofermentans ISD... 40 0.26
GM956808_1(GM956808|pid:none) Sequence 3762 from Patent WO200814... 40 0.26
AM746676_4128(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 40 0.26
BA000012_1945(BA000012|pid:none) Mesorhizobium loti MAFF303099 D... 40 0.26
CP001251_1166(CP001251|pid:none) Dictyoglomus turgidum DSM 6724,... 40 0.26
CP000462_2737(CP000462|pid:none) Aeromonas hydrophila subsp. hyd... 40 0.26
AP008971_1148(AP008971|pid:none) Finegoldia magna ATCC 29328 DNA... 39 0.35
FM178379_748(FM178379|pid:none) Aliivibrio salmonicida LFI1238 c... 39 0.35
CP000512_3028(CP000512|pid:none) Acidovorax citrulli AAC00-1, co... 39 0.35
AE009442_282(AE009442|pid:none) Xylella fastidiosa Temecula1, co... 39 0.45
CP000951_2035(CP000951|pid:none) Synechococcus sp. PCC 7002, com... 39 0.45
AE008691_33(AE008691|pid:none) Thermoanaerobacter tengcongensis ... 39 0.45
CP000110_1181(CP000110|pid:none) Synechococcus sp. CC9605, compl... 39 0.45
AE003852_848(AE003852|pid:none) Vibrio cholerae O1 biovar eltor ... 39 0.45
CP000813_1198(CP000813|pid:none) Bacillus pumilus SAFR-032, comp... 39 0.59
CP001291_4949(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 39 0.59
CP000094_4579(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ... 39 0.59
CP000408_2051(CP000408|pid:none) Streptococcus suis 98HAH33, com... 39 0.59
AE015928_321(AE015928|pid:none) Bacteroides thetaiotaomicron VPI... 39 0.59
CP000444_1300(CP000444|pid:none) Shewanella sp. MR-7, complete g... 39 0.59
BX571856_556(BX571856|pid:none) Staphylococcus aureus subsp. aur... 39 0.59
CP000860_14(CP000860|pid:none) Candidatus Desulforudis audaxviat... 39 0.59
AF1414(AF1414) conserved hypothetical proteins lmo2719 [imported... 39 0.59
CP000058_1285(CP000058|pid:none) Pseudomonas syringae pv. phaseo... 39 0.59
CP001344_4431(CP001344|pid:none) Cyanothece sp. PCC 7425, comple... 39 0.59
AM263198_2671(AM263198|pid:none) Listeria welshimeri serovar 6b ... 39 0.59
CP000949_4165(CP000949|pid:none) Pseudomonas putida W619, comple... 39 0.59
CP000361_39(CP000361|pid:none) Arcobacter butzleri RM4018, compl... 39 0.59
CP000075_1266(CP000075|pid:none) Pseudomonas syringae pv. syring... 39 0.59
CP000825_969(CP000825|pid:none) Prochlorococcus marinus str. MIT... 39 0.59
CP001175_2780(CP001175|pid:none) Listeria monocytogenes HCC23, c... 39 0.59
AE017333_1331(AE017333|pid:none) Bacillus licheniformis DSM 13, ... 38 0.77
CP001157_3839(CP001157|pid:none) Azotobacter vinelandii DJ, comp... 38 0.77
CP000551_939(CP000551|pid:none) Prochlorococcus marinus str. AS9... 38 0.77
CP000859_2024(CP000859|pid:none) Desulfococcus oleovorans Hxd3, ... 38 0.77
CP000076_4857(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c... 38 0.77
AM743169_2814(AM743169|pid:none) Stenotrophomonas maltophilia K2... 38 0.77
AE016795_324(AE016795|pid:none) Vibrio vulnificus CMCP6 chromoso... 38 0.77
BA000037_843(BA000037|pid:none) Vibrio vulnificus YJ016 DNA, chr... 38 0.77
BA000045_1053(BA000045|pid:none) Gloeobacter violaceus PCC 7421 ... 38 0.77
CP000139_1871(CP000139|pid:none) Bacteroides vulgatus ATCC 8482,... 38 0.77
AM236080_529(AM236080|pid:none) Rhizobium leguminosarum bv. vici... 38 0.77
AP009324_556(AP009324|pid:none) Staphylococcus aureus subsp. aur... 38 0.77
CP000931_1369(CP000931|pid:none) Shewanella halifaxensis HAW-EB4... 38 0.77
CP000891_3120(CP000891|pid:none) Shewanella baltica OS195, compl... 38 1.0
CP000826_3642(CP000826|pid:none) Serratia proteamaculans 568, co... 38 1.0
CP001010_473(CP001010|pid:none) Polynucleobacter necessarius sub... 38 1.0
GM956834_1(GM956834|pid:none) Sequence 3788 from Patent WO200814... 38 1.0
CP001616_2261(CP001616|pid:none) Tolumonas auensis DSM 9187, com... 38 1.0
CP001614_2271(CP001614|pid:none) Teredinibacter turnerae T7901, ... 38 1.0
AE002160_225(AE002160|pid:none) Chlamydia muridarum Nigg, comple... 38 1.0
CP001104_1959(CP001104|pid:none) Eubacterium eligens ATCC 27750,... 38 1.0
CP000140_2491(CP000140|pid:none) Parabacteroides distasonis ATCC... 38 1.0
FM954972_596(FM954972|pid:none) Vibrio splendidus LGP32 chromoso... 37 1.3
CP001600_837(CP001600|pid:none) Edwardsiella ictaluri 93-146, co... 37 1.3
CP001078_529(CP001078|pid:none) Clostridium botulinum E3 str. Al... 37 1.3
AP009510_587(AP009510|pid:none) Uncultured Termite group 1 bacte... 37 1.3
CP000469_1228(CP000469|pid:none) Shewanella sp. ANA-3, complete ... 37 1.3
BA000039_177(BA000039|pid:none) Thermosynechococcus elongatus BP... 37 1.3
(P21335) RecName: Full=tRNA-specific adenosine deaminase; ... 37 1.7
CP001146_1066(CP001146|pid:none) Dictyoglomus thermophilum H-6-1... 37 1.7
CT573071_1128(CT573071|pid:none) Kuenenia stuttgartiensis genome... 37 1.7
AM910985_190(AM910985|pid:none) Plasmodium knowlesi strain H chr... 37 1.7
AE015929_327(AE015929|pid:none) Staphylococcus epidermidis ATCC ... 37 1.7
BX548174_1045(BX548174|pid:none) Prochlorococcus marinus MED4 co... 37 1.7
(Q9S7I0) RecName: Full=Uncharacterized protein At1g68720; &AC00... 37 1.7
AM181176_1041(AM181176|pid:none) Pseudomonas fluorescens SBW25 c... 37 1.7
CP000481_2014(CP000481|pid:none) Acidothermus cellulolyticus 11B... 37 2.2
CP000863_1616(CP000863|pid:none) Acinetobacter baumannii ACICU, ... 37 2.2
AE003849_1009(AE003849|pid:none) Xylella fastidiosa 9a5c, comple... 37 2.2
CP000139_1826(CP000139|pid:none) Bacteroides vulgatus ATCC 8482,... 37 2.2
AP006841_1634(AP006841|pid:none) Bacteroides fragilis YCH46 DNA,... 37 2.2
CP001618_1660(CP001618|pid:none) Beutenbergia cavernae DSM 12333... 37 2.2
AM420293_1230(AM420293|pid:none) Saccharopolyspora erythraea NRR... 37 2.2
AE001362_162(AE001362|pid:none) Plasmodium falciparum 3D7 chromo... 37 2.2
BA000040_4780(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 37 2.2
CU459141_1947(CU459141|pid:none) Acinetobacter baumannii str. AY... 37 2.2
AM778943_51(AM778943|pid:none) Microcystis aeruginosa PCC 7806 g... 36 2.9
CP001252_1345(CP001252|pid:none) Shewanella baltica OS223, compl... 36 2.9
AM398681_272(AM398681|pid:none) Flavobacterium psychrophilum JIP... 36 2.9
CP000454_3398(CP000454|pid:none) Arthrobacter sp. FB24, complete... 36 2.9
AE016853_1422(AE016853|pid:none) Pseudomonas syringae pv. tomato... 36 2.9
AY658017_1(AY658017|pid:none) Synthetic construct Peudomonas aer... 36 2.9
CP000232_25(CP000232|pid:none) Moorella thermoacetica ATCC 39073... 36 2.9
AE004091_3766(AE004091|pid:none) Pseudomonas aeruginosa PAO1, co... 36 2.9
CP001032_3639(CP001032|pid:none) Opitutus terrae PB90-1, complet... 36 2.9
GM956640_1(GM956640|pid:none) Sequence 3594 from Patent WO200814... 36 3.8
CP000555_774(CP000555|pid:none) Methylibium petroleiphilum PM1, ... 36 3.8
BX908798_648(BX908798|pid:none) Parachlamydia-related symbiont U... 36 3.8
AJ006764_1(AJ006764|pid:none) Cicer arietinum mRNA for putative ... 36 3.8
CU468230_1656(CU468230|pid:none) Acinetobacter baumannii str. SD... 36 3.8
FM177140_1308(FM177140|pid:none) Lactobacillus casei BL23 comple... 36 3.8
CP000878_1025(CP000878|pid:none) Prochlorococcus marinus str. MI... 36 3.8
GM956802_1(GM956802|pid:none) Sequence 3756 from Patent WO200814... 36 3.8
CP000423_1061(CP000423|pid:none) Lactobacillus casei ATCC 334, c... 36 3.8
CP000744_1337(CP000744|pid:none) Pseudomonas aeruginosa PA7, com... 36 3.8
CP001108_1498(CP001108|pid:none) Prosthecochloris aestuarii DSM ... 36 3.8
AE015924_649(AE015924|pid:none) Porphyromonas gingivalis W83, co... 35 5.0
CP000108_189(CP000108|pid:none) Chlorobium chlorochromatii CaD3,... 35 5.0
X95938_2(X95938|pid:none) P.gingivalis rnhB & pgaA genes & orfs ... 35 5.0
CP000453_1011(CP000453|pid:none) Alkalilimnicola ehrlichii MLHE-... 35 5.0
BT051258_1(BT051258|pid:none) Medicago truncatula clone MTYF1_F2... 35 5.0
CP000509_272(CP000509|pid:none) Nocardioides sp. JS614, complete... 35 5.0
(O34598) RecName: Full=Guanine deaminase; Short=GDEase;... 35 5.0
AM260479_2649(AM260479|pid:none) Ralstonia eutropha H16 chromoso... 35 5.0
CP000088_25(CP000088|pid:none) Thermobifida fusca YX, complete g... 35 5.0
AL844508_102(AL844508|pid:none) Plasmodium falciparum 3D7 chromo... 35 6.5
CP001055_105(CP001055|pid:none) Elusimicrobium minutum Pei191, c... 35 6.5
AL844505_153(AL844505|pid:none) Plasmodium falciparum 3D7 chromo... 35 6.5
CP001032_4564(CP001032|pid:none) Opitutus terrae PB90-1, complet... 35 6.5
CP000473_6337(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 35 6.5
CP001034_14(CP001034|pid:none) Natranaerobius thermophilus JW/NM... 35 6.5
AY714675_1(AY714675|pid:none) Epizootic hemorrhagic disease viru... 35 6.5
AY714694_1(AY714694|pid:none) Epizootic hemorrhagic disease viru... 35 6.5
CU928175_673(CU928175|pid:none) Zygosaccharomyces rouxii strain ... 35 6.5
CP000539_2188(CP000539|pid:none) Acidovorax sp. JS42, complete g... 35 6.5
AM889285_1426(AM889285|pid:none) Gluconacetobacter diazotrophicu... 35 6.5
CP001392_1562(CP001392|pid:none) Diaphorobacter sp. TPSY, comple... 35 6.5
AE016828_1186(AE016828|pid:none) Coxiella burnetii RSA 493, comp... 35 6.5
CP000962_1342(CP000962|pid:none) Clostridium botulinum A3 str. L... 35 8.5
CP001083_1259(CP001083|pid:none) Clostridium botulinum Ba4 str. ... 35 8.5
AM412317_1283(AM412317|pid:none) Clostridium botulinum A str. AT... 35 8.5
CP000728_1269(CP000728|pid:none) Clostridium botulinum F str. La... 35 8.5
AF086638_3(AF086638|pid:none) Pseudomonas putida CumA precursor ... 35 8.5
AY714674_1(AY714674|pid:none) Epizootic hemorrhagic disease viru... 35 8.5
AM946015_1149(AM946015|pid:none) Streptococcus uberis 0140J comp... 35 8.5
CP000312_2536(CP000312|pid:none) Clostridium perfringens SM101, ... 35 8.5

>AC116977_84(AC116977|pid:none) Dictyostelium discoideum chromosome
2 map 5515173-5817331 strain AX4, complete sequence.
Length = 322

Score = 152 bits (384), Expect = 3e-35
Identities = 78/207 (37%), Positives = 121/207 (58%), Gaps = 1/207 (0%)
Frame = +3

Query: 165 NNSVLGNCEKNQTAKYKKISSKYGNEEIKEITTNQLSKDQLEKHEMFMKIALEIAIKSKV 344
N S +G C Q A +K + ++ +T L +L HE M L IA +
Sbjct: 27 NTSTIGECTATQKASWKP------TDNVQVLTPADLDPQKLGMHEERMAYVLAIAKQQNK 80

Query: 345 KFVSIIVSPDDRVLCSGIFS-KENAILHSELVAITNCSSSHKMVTFENHTIYSTAEPDSL 521
KFV+ I + ++C G+ + K N I H E+VAI NC++ H + +F N+T+Y++ EP ++
Sbjct: 81 KFVASIYHQNGTLMCLGVNTGKPNIISHGEIVAINNCTALHGITSFTNYTLYTSGEPCAM 140

Query: 522 SSSAIVWARFKQVVYGSSIKHLYCNACFSSLPIDSTYIFSRGYGIGVENIQLVAGVLQDQ 701
S+A++WA FK +V+G+ L C C S++P+DS+YIF R YG+ +++ GVL+ +
Sbjct: 141 CSAALLWADFKTIVWGTFNSDLLCKICMSNIPMDSSYIFGRYYGLRASPPRVIGGVLRTE 200

Query: 702 TDANFGSYCNSSISSVYKTNPQCKCKN 782
DA FGSYC S +S+Y PQC C N
Sbjct: 201 ADAWFGSYC-SKPTSIYYIKPQCVCTN 226

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,502,056,341
Number of extensions: 26817036
Number of successful extensions: 93410
Number of sequences better than 10.0: 227
Number of HSP's gapped: 92235
Number of HSP's successfully gapped: 228
Length of query: 465
Length of database: 1,051,180,864
Length adjustment: 132
Effective length of query: 333
Effective length of database: 623,955,076
Effective search space: 207777040308
Effective search space used: 207777040308
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 1.02 gvh: 0.60 alm: 0.21 top: 0.07 tms: 0.07 mit: 0.27 mip: 0.00
nuc: 0.24 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: cytoplasmic
20.0 %: nuclear
20.0 %: endoplasmic reticulum
16.0 %: Golgi
12.0 %: mitochondrial
4.0 %: extracellular, including cell wall
4.0 %: plasma membrane

>> prediction for Contig-U13885-1 is cyt

VS (DIR, S) 2
VH (FL, L) 0
VF (FL, S) 3
AH (FL, L) 0
AF (FL, S) 10
SL (DIR, L) 2
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 4
CH (FL, L) 1
CF (FL, S) 2
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0