Contig-U13885-1 |
Contig ID |
Contig-U13885-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
no gap |
Contig length |
1396 |
Chromosome number (1..6, M) |
4 |
Chromosome length |
5430582 |
Start point |
4152946 |
End point |
4154343 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
25 |
Number of EST |
43 |
Link to clone list |
U13885 |
List of clone(s) |
est1=AFK271F,1,566 est2=VFH877F,2,264 est3=VFB765F,6,434 est4=SFG631F,11,574 est5=CFH108F,13,119 est6=SFJ787F,14,641 est7=AFL225F,16,516 est8=AFE746E,22,1239 est9=AFG560F,22,488 est10=AFJ609F,22,603 est11=AFJ852F,22,588 est12=CHE494F,22,564 est13=AFI438F,24,455 est14=AFE567F,28,422 est15=SFJ362F,32,601 est16=SLC561F,80,716 est17=SFH820F,98,586 est18=CFA364F,172,752 est19=SSD787E,489,1395 est20=SLA314F,618,964 est21=AFK271Z,641,1368 est22=CFH108Z,644,1388 est23=VFB765Z,645,1251 est24=SFJ362Z,682,1390 est25=AFJ609Z,683,1368 est26=VFH877Z,684,1391 est27=AFE567Z,689,1390 est28=SFJ787Z,691,1390 est29=VSA102Z,691,1286 est30=CFA364Z,721,1368 est31=AFI438Z,725,1361 est32=SFH820Z,725,1390 est33=AFJ852Z,727,1366 est34=CHE494Z,731,1363 est35=AFG560Z,733,1368 est36=AFL225Z,767,1390 est37=VSH413Z,796,1397 est38=VSH413F,808,1384 est39=AFE852Z,816,1368 est40=SLC561Z,890,1397 est41=AFC338Z,947,1369 est42=SLA314Z,1029,1231 est43=VFK354Z,1228,1358
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Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.12.14 |
Homology vs DNA |
Query= Contig-U13885-1 (Contig-U13885-1Q) /CSM_Contig/Contig-U13885-1Q.Seq.d (1396 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ358476) Dictyostelium discoideum cDNA clone:ddc1p15, 5' e... 1146 0.0 1 (AU060998) Dictyostelium discoideum slug cDNA, clone SLC561. 942 0.0 2 (BJ339793) Dictyostelium discoideum cDNA clone:dda10l11, 3' ... 535 0.0 3 (BJ390031) Dictyostelium discoideum cDNA clone:dds20n21, 5' ... 979 0.0 2 (BJ327312) Dictyostelium discoideum cDNA clone:dda20a04, 5' ... 902 0.0 2 (BJ389673) Dictyostelium discoideum cDNA clone:dds19l15, 5' ... 892 0.0 1 (BJ327477) Dictyostelium discoideum cDNA clone:dda20h14, 5' ... 872 0.0 2 (BJ327764) Dictyostelium discoideum cDNA clone:dda21m18, 5' ... 829 0.0 2 (BJ390961) Dictyostelium discoideum cDNA clone:dds14m08, 5' ... 846 0.0 2 (BJ364229) Dictyostelium discoideum cDNA clone:ddc30l24, 5' ... 827 0.0 2 (BJ388751) Dictyostelium discoideum cDNA clone:dds16h06, 5' ... 837 0.0 1 (BJ323400) Dictyostelium discoideum cDNA clone:dda10l11, 5' ... 807 0.0 2 (BJ345119) Dictyostelium discoideum cDNA clone:dda21m18, 3' ... 406 0.0 5 (BJ372976) Dictyostelium discoideum cDNA clone:ddc15o01, 3' ... 398 0.0 5 (BJ328178) Dictyostelium discoideum cDNA clone:dda23a08, 5' ... 729 0.0 2 (BJ344636) Dictyostelium discoideum cDNA clone:dda20a04, 3' ... 406 0.0 5 (BJ401864) Dictyostelium discoideum cDNA clone:dds19l15, 3' ... 406 0.0 5 (BJ434440) Dictyostelium discoideum cDNA clone:ddv16j20, 3' ... 406 0.0 5 (BJ429673) Dictyostelium discoideum cDNA clone:ddv4b17, 3' e... 400 0.0 5 (BJ339826) Dictyostelium discoideum cDNA clone:dda10e17, 3' ... 406 0.0 5 (BJ402239) Dictyostelium discoideum cDNA clone:dds20n21, 3' ... 406 0.0 5 (AU261277) Dictyostelium discoideum vegetative cDNA clone:VS... 406 0.0 4 (BJ325449) Dictyostelium discoideum cDNA clone:dda14g15, 5' ... 650 0.0 2 (BJ371844) Dictyostelium discoideum cDNA clone:ddc1p15, 3' e... 406 e-174 5 (BJ343853) Dictyostelium discoideum cDNA clone:dda17l10, 3' ... 406 e-173 5 (BJ344816) Dictyostelium discoideum cDNA clone:dda20h14, 3' ... 406 e-171 5 (BJ402282) Dictyostelium discoideum cDNA clone:dds16h06, 3' ... 406 e-170 5 (BJ326644) Dictyostelium discoideum cDNA clone:dda17l10, 5' ... 601 e-169 2 (BJ342554) Dictyostelium discoideum cDNA clone:dda14g15, 3' ... 406 e-168 5 (BJ376989) Dictyostelium discoideum cDNA clone:ddc30l24, 3' ... 400 e-165 5 (BJ345288) Dictyostelium discoideum cDNA clone:dda23a08, 3' ... 406 e-162 4 (AU267408) Dictyostelium discoideum vegetative cDNA clone:VS... 406 e-160 4 (AU267409) Dictyostelium discoideum vegetative cDNA clone:VS... 398 e-160 4 (BJ411454) Dictyostelium discoideum cDNA clone:ddv4b17, 5' e... 549 e-159 2 (BJ339834) Dictyostelium discoideum cDNA clone:dda10h14, 3' ... 392 e-158 4 (AU037560) Dictyostelium discoideum slug cDNA, clone SSD787. 392 e-158 4 (BJ323431) Dictyostelium discoideum cDNA clone:dda10e17, 5' ... 543 e-151 2 (AU060102) Dictyostelium discoideum slug cDNA, clone SLA314. 295 e-148 2 (AU072234) Dictyostelium discoideum slug cDNA, clone SSD787. 476 e-129 1 (AU034311) Dictyostelium discoideum slug cDNA, clone SLC561. 246 e-114 4 (BJ341141) Dictyostelium discoideum cDNA clone:dda5l09, 3' e... 188 4e-83 4 (BJ413760) Dictyostelium discoideum cDNA clone:ddv16j20, 5' ... 182 2e-54 4 (AU040046) Dictyostelium discoideum slug cDNA, clone SLA314. 176 1e-39 1 (BJ414247) Dictyostelium discoideum cDNA clone:ddv18d15, 5' ... 64 2e-05 1 (BJ411745) Dictyostelium discoideum cDNA clone:ddv5k18, 5' e... 62 6e-05 1 (BJ387855) Dictyostelium discoideum cDNA clone:dds5o08, 5' e... 60 2e-04 1 (BJ327585) Dictyostelium discoideum cDNA clone:dda21a02, 5' ... 54 0.003 2 (BJ389142) Dictyostelium discoideum cDNA clone:dds17l16, 5' ... 56 0.004 1 (BJ327473) Dictyostelium discoideum cDNA clone:dda20g13, 5' ... 42 0.013 2 (EB312566) CNSN01-F-076331-501 Normalized CNS library (juven... 54 0.015 1 (BJ387770) Dictyostelium discoideum cDNA clone:dds4g23, 5' e... 54 0.015 1 (BJ363853) Dictyostelium discoideum cDNA clone:ddc28g20, 5' ... 54 0.015 1 (BJ362987) Dictyostelium discoideum cDNA clone:ddc24p08, 5' ... 54 0.015 1 (BJ359521) Dictyostelium discoideum cDNA clone:ddc15o01, 5' ... 54 0.015 1 (BJ415751) Dictyostelium discoideum cDNA clone:ddv23i15, 5' ... 42 0.047 2 (BJ325713) Dictyostelium discoideum cDNA clone:dda1j04, 5' e... 38 0.048 2 (CU075915) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 52 0.058 1 (CU041241) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 52 0.058 1 (BJ325565) Dictyostelium discoideum cDNA clone:dda1m11, 5' e... 52 0.058 1 (CU862014) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 40 0.14 2 (CR381597) Zebrafish DNA sequence from clone CH211-182L5 in ... 40 0.15 2 (AB017910) Dictyostelium discoideum myoM gene, complete cds. 38 0.16 2 (AF090533) Dictyostelium discoideum unconventional myosin he... 38 0.16 2 (DC240635) Petunia x hybrida cDNA, clone: PET04SEQ02208C. 44 0.17 2 (BJ415928) Dictyostelium discoideum cDNA clone:ddv24o04, 5' ... 38 0.17 2 (CJ489042) Macaca fascicularis mRNA, clone: QtsA-16775, 5' e... 50 0.23 1 (CJ489015) Macaca fascicularis mRNA, clone: QtsA-16748, 5' e... 50 0.23 1 (CJ489014) Macaca fascicularis mRNA, clone: QtsA-16747, 5' e... 50 0.23 1 (CJ489006) Macaca fascicularis mRNA, clone: QtsA-16739, 5' e... 50 0.23 1 (CJ465147) Macaca fascicularis mRNA, clone: QnpA-14172, 5' e... 50 0.23 1 (CR847783) Zebrafish DNA sequence from clone DKEYP-2C8 in li... 38 0.36 4 (AC026891) Mus musculus strain C57BL6/J chromosome 6 clone R... 40 0.38 5 (EY305420) CAWX19362.fwd CAWX Helobdella robusta Primary Ear... 36 0.63 3 (EY337878) CAWY863.fwd CAWY Helobdella robusta Subtracted Ea... 36 0.64 2 (EY350106) CAWZ17414.fwd CAWZ Helobdella robusta Primary Lat... 36 0.64 2 (AC115684) Dictyostelium discoideum chromosome 2 map 3108975... 38 0.76 6 (CS752579) Sequence 20575 from Patent WO2005083127. 48 0.90 1 (CS741899) Sequence 9895 from Patent WO2005083127. 48 0.90 1 (DQ496101) Homo sapiens cytochrome b reductase 1 (CYBRD1) ge... 48 0.90 1 (AC007969) Homo sapiens BAC clone RP11-471A5 from 2, complet... 48 0.90 1 (CK091717) F120P43.3pR Populus flower cDNA library Populus t... 48 0.90 1 (BJ416069) Dictyostelium discoideum cDNA clone:ddv24e23, 5' ... 48 0.90 1 (BJ386726) Dictyostelium discoideum cDNA clone:dds10h11, 5' ... 48 0.90 1 (BJ363881) Dictyostelium discoideum cDNA clone:ddc28o20, 5' ... 48 0.90 1 (BJ326284) Dictyostelium discoideum cDNA clone:dda15m05, 5' ... 48 0.90 1 (BJ324243) Dictyostelium discoideum cDNA clone:dda5o07, 5' e... 48 0.90 1 (FD757511) Afi04_171_F01_C014.g1 Aristolochia fimbriata flow... 38 0.95 2 (FD757205) Afi04_164_E03_C014.g1 Aristolochia fimbriata flow... 38 0.95 2 (FD759403) Afi04_199_G12_C014.g1 Aristolochia fimbriata flow... 38 1.00 2 (FD751575) Afi04_79_B05_C014.g1 Aristolochia fimbriata flowe... 38 1.0 2 (AC128518) Rattus norvegicus clone CH230-217M24, *** SEQUENC... 38 1.0 5 (AC216215) Macaca mulatta chromosome UNKNOWN clone CH250-222... 36 1.6 5 (AC179609) Strongylocentrotus purpuratus clone R3-1028L19, W... 36 1.8 2 (AC180806) Strongylocentrotus purpuratus clone R3-3071I04, W... 36 1.8 2 (AC180074) Strongylocentrotus purpuratus clone R3-3001B09, W... 36 1.8 2 (AC178079) Strongylocentrotus purpuratus clone R3-3059O13, W... 36 1.9 2 (CI000208) Oryza sativa Japonica Group cDNA, clone: 003-M004... 38 2.0 2 (AL358034) Human DNA sequence from clone RP11-51K14 on chrom... 38 2.0 3 (CI053679) Oryza sativa Japonica Group cDNA, clone: 013-M020... 38 2.1 2 (BJ369909) Dictyostelium discoideum cDNA clone:ddc52p08, 5' ... 32 2.4 2
>(BJ358476) Dictyostelium discoideum cDNA clone:ddc1p15, 5' end, single read. Length = 581
Score = 1146 bits (578), Expect = 0.0 Identities = 580/581 (99%) Strand = Plus / Plus
Query: 172 gtgtacttggaaattgtgaaaagaatcaaactgcaaaatataaaaagatatcatccaaat 231 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1 gtgtacttggaaattgtgaaaagaatnaaactgcaaaatataaaaagatatcatccaaat 60
Query: 232 atggtaatgaagaaattaaagagattacaaccaatcaattaagcaaagatcaacttgaaa 291 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 atggtaatgaagaaattaaagagattacaaccaatcaattaagcaaagatcaacttgaaa 120
Query: 292 aacatgaaatgtttatgaagattgcattggaaatagcaattaaaagtaaagttaaattcg 351 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 aacatgaaatgtttatgaagattgcattggaaatagcaattaaaagtaaagttaaattcg 180
Query: 352 tttccatcattgtatcaccagatgatcgtgtactttgttcaggtatcttctcaaaagaga 411 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 tttccatcattgtatcaccagatgatcgtgtactttgttcaggtatcttctcaaaagaga 240
Query: 412 atgccattcttcatagtgaattggttgccattacaaattgcagttcgtcccataaaatgg 471 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 atgccattcttcatagtgaattggttgccattacaaattgcagttcgtcccataaaatgg 300
Query: 472 taacttttgaaaatcatacaatctatagtactgccgaaccagattcattgtcttcttctg 531 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 taacttttgaaaatcatacaatctatagtactgccgaaccagattcattgtcttcttctg 360
Query: 532 ccatcgtatgggcacgtttcaaacaagttgtctatggctcttcaattaaacatctctatt 591 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 ccatcgtatgggcacgtttcaaacaagttgtctatggctcttcaattaaacatctctatt 420
Query: 592 gtaatgcttgcttctcaagtttaccaattgattcaacttatattttctcaagaggttatg 651 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 gtaatgcttgcttctcaagtttaccaattgattcaacttatattttctcaagaggttatg 480
Query: 652 gtattggagttgaaaatatccaattggttgctggtgttttacaagatcaaaccgatgcaa 711 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 gtattggagttgaaaatatccaattggttgctggtgttttacaagatcaaaccgatgcaa 540
Query: 712 actttggttcctattgtaattcgtcaatatcttcagtttat 752 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 actttggttcctattgtaattcgtcaatatcttcagtttat 581
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,252,387,235 Number of extensions: 80571085 Number of successful extensions: 8325082 Number of sequences better than 10.0: 199 Length of query: 1396 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1372 Effective length of database: 97,308,875,965 Effective search space: 133507777823980 Effective search space used: 133507777823980 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7. 8 |
Homology vs Protein |
Query= Contig-U13885-1 (Contig-U13885-1Q) /CSM_Contig/Contig-U13885-1Q.Seq.d (1396 letters)
Database: nrp_B 3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
AC116977_84(AC116977|pid:none) Dictyostelium discoideum chromoso... 152 3e-35 AC116032_1(AC116032|pid:none) Dictyostelium discoideum chromosom... 130 1e-28 EF591889_14(EF591889|pid:none) Uncultured planctomycete 13FN clo... 60 1e-07 CU633453_11(CU633453|pid:none) Podospora anserina genomic DNA ch... 59 3e-07 AY710429_3(AY710429|pid:none) Cryptococcus gattii strain E566 MA... 58 9e-07 CU633897_23(CU633897|pid:none) Podospora anserina genomic DNA ch... 57 1e-06 AY710430_3(AY710430|pid:none) Cryptococcus gattii strain WM276 M... 57 2e-06 CP000117_2025(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 54 1e-05 CP001037_2059(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 54 1e-05 CP000764_16(CP000764|pid:none) Bacillus cereus subsp. cytotoxis ... 53 2e-05 AF542530_3(AF542530|pid:none) Cryptococcus neoformans var. neofo... 53 3e-05 AF542528_3(AF542528|pid:none) Cryptococcus neoformans var. grubi... 52 4e-05 CP001161_233(CP001161|pid:none) Buchnera aphidicola str. 5A (Acy... 51 9e-05 AB2385(AB2385) hypothetical protein alr4634 [imported] - Nostoc ... 51 9e-05 CP001229_148(CP001229|pid:none) Sulfurihydrogenibium azorense Az... 51 1e-04 CR628336_187(CR628336|pid:none) Legionella pneumophila str. Pari... 50 1e-04 CT573071_1129(CT573071|pid:none) Kuenenia stuttgartiensis genome... 50 2e-04 CP000634_69(CP000634|pid:none) Agrobacterium vitis S4 chromosome... 50 2e-04 AP009484_1852(AP009484|pid:none) Macrococcus caseolyticus JCSC54... 50 3e-04 (P57343) RecName: Full=Uncharacterized protein BU255; &BA000003... 49 3e-04 CP001139_636(CP001139|pid:none) Vibrio fischeri MJ11 chromosome ... 49 6e-04 AJ616007_1(AJ616007|pid:none) Candida albicans fca1 gene for put... 48 0.001 CP000557_15(CP000557|pid:none) Geobacillus thermodenitrificans N... 48 0.001 CP001615_1703(CP001615|pid:none) Exiguobacterium sp. AT1b, compl... 48 0.001 AE016827_404(AE016827|pid:none) Mannheimia succiniciproducens MB... 47 0.001 CP000087_1426(CP000087|pid:none) Rickettsia bellii RML369-C, com... 47 0.001 CP000903_17(CP000903|pid:none) Bacillus weihenstephanensis KBAB4... 47 0.002 CP000227_18(CP000227|pid:none) Bacillus cereus Q1, complete geno... 47 0.002 AE017194_19(AE017194|pid:none) Bacillus cereus ATCC 10987, compl... 47 0.002 BA000028_26(BA000028|pid:none) Oceanobacillus iheyensis HTE831 D... 47 0.002 AE016877_16(AE016877|pid:none) Bacillus cereus ATCC 14579, compl... 46 0.003 CP001230_149(CP001230|pid:none) Persephonella marina EX-H1, comp... 46 0.003 CP000671_1313(CP000671|pid:none) Haemophilus influenzae PittEE, ... 46 0.003 CP001176_17(CP001176|pid:none) Bacillus cereus B4264, complete g... 46 0.003 AP006716_2434(AP006716|pid:none) Staphylococcus haemolyticus JCS... 46 0.004 CP000020_644(CP000020|pid:none) Vibrio fischeri ES114 chromosome... 46 0.004 BA000040_6153(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 46 0.004 (P44931) RecName: Full=tRNA-specific adenosine deaminase; ... 46 0.004 AE016879_17(AE016879|pid:none) Bacillus anthracis str. Ames, com... 45 0.005 CP000411_1170(CP000411|pid:none) Oenococcus oeni PSU-1, complete... 45 0.006 AE009948_398(AE009948|pid:none) Streptococcus agalactiae 2603V/R... 45 0.006 CP000494_1947(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl... 45 0.008 CP000612_17(CP000612|pid:none) Desulfotomaculum reducens MI-1, c... 45 0.008 AP009179_1183(AP009179|pid:none) Sulfurovum sp. NBC37-1 genomic ... 45 0.008 CP000510_3140(CP000510|pid:none) Psychromonas ingrahamii 37, com... 44 0.011 CP001227_630(CP001227|pid:none) Rickettsia peacockii str. Rustic... 44 0.014 (Q9ZCC6) RecName: Full=Uncharacterized deaminase RP831; ... 44 0.014 CP000512_1061(CP000512|pid:none) Acidovorax citrulli AAC00-1, co... 44 0.014 CP000499_103(CP000499|pid:none) Pichia stipitis CBS 6054 chromos... 44 0.014 AM295250_220(AM295250|pid:none) Staphylococcus carnosus subsp. c... 44 0.014 CP001080_490(CP001080|pid:none) Sulfurihydrogenibium sp. YO3AOP1... 44 0.014 CP001612_965(CP001612|pid:none) Rickettsia africae ESF-5, comple... 44 0.014 CP000766_1295(CP000766|pid:none) Rickettsia rickettsii str. Iowa... 44 0.014 CU207366_3417(CU207366|pid:none) Gramella forsetii KT0803 comple... 44 0.014 CP001001_4726(CP001001|pid:none) Methylobacterium radiotolerans ... 44 0.018 (Q92G39) RecName: Full=Uncharacterized deaminase RC1285; ... 44 0.018 CP000252_76(CP000252|pid:none) Syntrophus aciditrophicus SB, com... 44 0.018 AE014133_275(AE014133|pid:none) Streptococcus mutans UA159, comp... 44 0.018 AE006914_1285(AE006914|pid:none) Rickettsia conorii str. Malish ... 44 0.018 CP000300_201(CP000300|pid:none) Methanococcoides burtonii DSM 62... 44 0.018 T31613(T31613)hypothetical protein Y50E8A.i - Caenorhabditis ele... 43 0.024 CP000001_17(CP000001|pid:none) Bacillus cereus E33L, complete ge... 43 0.024 CP000053_1319(CP000053|pid:none) Rickettsia felis URRWXCal2, com... 43 0.024 CP000847_1174(CP000847|pid:none) Rickettsia akari str. Hartford,... 43 0.024 CP000606_1296(CP000606|pid:none) Shewanella loihica PV-4, comple... 43 0.031 CP000474_1497(CP000474|pid:none) Arthrobacter aurescens TC1, com... 43 0.031 AP004728_14(AP004728|pid:none) Oryza sativa Japonica Group genom... 43 0.031 (Q4UJW9) RecName: Full=Uncharacterized deaminase RF_1319; ... 43 0.031 CP000817_20(CP000817|pid:none) Lysinibacillus sphaericus C3-41, ... 42 0.041 CP001071_799(CP001071|pid:none) Akkermansia muciniphila ATCC BAA... 42 0.041 CU234118_4115(CU234118|pid:none) Bradyrhizobium sp. ORS278,compl... 42 0.041 CP000687_531(CP000687|pid:none) Actinobacillus pleuropneumoniae ... 42 0.041 CP000859_2895(CP000859|pid:none) Desulfococcus oleovorans Hxd3, ... 42 0.041 CP001102_213(CP001102|pid:none) Candidatus Amoebophilus asiaticu... 42 0.053 CP001107_295(CP001107|pid:none) Eubacterium rectale ATCC 33656, ... 42 0.053 CP000233_1214(CP000233|pid:none) Lactobacillus salivarius UCC118... 42 0.053 CP000806_1272(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 42 0.053 GM956650_1(GM956650|pid:none) Sequence 3604 from Patent WO200814... 42 0.053 CP000975_40(CP000975|pid:none) Methylacidiphilum infernorum V4, ... 42 0.070 BA000022_1186(BA000022|pid:none) Synechocystis sp. PCC 6803 DNA,... 42 0.070 CP001147_1335(CP001147|pid:none) Thermodesulfovibrio yellowstoni... 42 0.070 CP001103_1387(CP001103|pid:none) Alteromonas macleodii 'Deep eco... 42 0.070 CP000009_774(CP000009|pid:none) Gluconobacter oxydans 621H, comp... 42 0.070 CP000961_1547(CP000961|pid:none) Shewanella woodyi ATCC 51908, c... 41 0.091 CP000949_2050(CP000949|pid:none) Pseudomonas putida W619, comple... 41 0.091 GM956826_1(GM956826|pid:none) Sequence 3780 from Patent WO200814... 41 0.091 CP000001_4558(CP000001|pid:none) Bacillus cereus E33L, complete ... 41 0.091 CP000304_2840(CP000304|pid:none) Pseudomonas stutzeri A1501, com... 41 0.091 CP001393_2297(CP001393|pid:none) Anaerocellum thermophilum DSM 6... 41 0.091 AE010299_3320(AE010299|pid:none) Methanosarcina acetivorans str.... 41 0.091 CP001111_2425(CP001111|pid:none) Stenotrophomonas maltophilia R5... 41 0.12 CP000474_760(CP000474|pid:none) Arthrobacter aurescens TC1, comp... 40 0.16 AE014299_3202(AE014299|pid:none) Shewanella oneidensis MR-1, com... 40 0.16 AM286690_821(AM286690|pid:none) Alcanivorax borkumensis SK2, com... 40 0.16 CP000447_1129(CP000447|pid:none) Shewanella frigidimarina NCIMB ... 40 0.16 CP001339_1019(CP001339|pid:none) Thioalkalivibrio sp. HL-EbGR7, ... 40 0.16 CP000680_3394(CP000680|pid:none) Pseudomonas mendocina ymp, comp... 40 0.20 CP000482_2230(CP000482|pid:none) Pelobacter propionicus DSM 2379... 40 0.20 CP001098_2062(CP001098|pid:none) Halothermothrix orenii H 168, c... 40 0.20 CP000885_3849(CP000885|pid:none) Clostridium phytofermentans ISD... 40 0.26 GM956808_1(GM956808|pid:none) Sequence 3762 from Patent WO200814... 40 0.26 AM746676_4128(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 40 0.26 BA000012_1945(BA000012|pid:none) Mesorhizobium loti MAFF303099 D... 40 0.26 CP001251_1166(CP001251|pid:none) Dictyoglomus turgidum DSM 6724,... 40 0.26 CP000462_2737(CP000462|pid:none) Aeromonas hydrophila subsp. hyd... 40 0.26 AP008971_1148(AP008971|pid:none) Finegoldia magna ATCC 29328 DNA... 39 0.35 FM178379_748(FM178379|pid:none) Aliivibrio salmonicida LFI1238 c... 39 0.35 CP000512_3028(CP000512|pid:none) Acidovorax citrulli AAC00-1, co... 39 0.35 AE009442_282(AE009442|pid:none) Xylella fastidiosa Temecula1, co... 39 0.45 CP000951_2035(CP000951|pid:none) Synechococcus sp. PCC 7002, com... 39 0.45 AE008691_33(AE008691|pid:none) Thermoanaerobacter tengcongensis ... 39 0.45 CP000110_1181(CP000110|pid:none) Synechococcus sp. CC9605, compl... 39 0.45 AE003852_848(AE003852|pid:none) Vibrio cholerae O1 biovar eltor ... 39 0.45 CP000813_1198(CP000813|pid:none) Bacillus pumilus SAFR-032, comp... 39 0.59 CP001291_4949(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 39 0.59 CP000094_4579(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ... 39 0.59 CP000408_2051(CP000408|pid:none) Streptococcus suis 98HAH33, com... 39 0.59 AE015928_321(AE015928|pid:none) Bacteroides thetaiotaomicron VPI... 39 0.59 CP000444_1300(CP000444|pid:none) Shewanella sp. MR-7, complete g... 39 0.59 BX571856_556(BX571856|pid:none) Staphylococcus aureus subsp. aur... 39 0.59 CP000860_14(CP000860|pid:none) Candidatus Desulforudis audaxviat... 39 0.59 AF1414(AF1414) conserved hypothetical proteins lmo2719 [imported... 39 0.59 CP000058_1285(CP000058|pid:none) Pseudomonas syringae pv. phaseo... 39 0.59 CP001344_4431(CP001344|pid:none) Cyanothece sp. PCC 7425, comple... 39 0.59 AM263198_2671(AM263198|pid:none) Listeria welshimeri serovar 6b ... 39 0.59 CP000949_4165(CP000949|pid:none) Pseudomonas putida W619, comple... 39 0.59 CP000361_39(CP000361|pid:none) Arcobacter butzleri RM4018, compl... 39 0.59 CP000075_1266(CP000075|pid:none) Pseudomonas syringae pv. syring... 39 0.59 CP000825_969(CP000825|pid:none) Prochlorococcus marinus str. MIT... 39 0.59 CP001175_2780(CP001175|pid:none) Listeria monocytogenes HCC23, c... 39 0.59 AE017333_1331(AE017333|pid:none) Bacillus licheniformis DSM 13, ... 38 0.77 CP001157_3839(CP001157|pid:none) Azotobacter vinelandii DJ, comp... 38 0.77 CP000551_939(CP000551|pid:none) Prochlorococcus marinus str. AS9... 38 0.77 CP000859_2024(CP000859|pid:none) Desulfococcus oleovorans Hxd3, ... 38 0.77 CP000076_4857(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c... 38 0.77 AM743169_2814(AM743169|pid:none) Stenotrophomonas maltophilia K2... 38 0.77 AE016795_324(AE016795|pid:none) Vibrio vulnificus CMCP6 chromoso... 38 0.77 BA000037_843(BA000037|pid:none) Vibrio vulnificus YJ016 DNA, chr... 38 0.77 BA000045_1053(BA000045|pid:none) Gloeobacter violaceus PCC 7421 ... 38 0.77 CP000139_1871(CP000139|pid:none) Bacteroides vulgatus ATCC 8482,... 38 0.77 AM236080_529(AM236080|pid:none) Rhizobium leguminosarum bv. vici... 38 0.77 AP009324_556(AP009324|pid:none) Staphylococcus aureus subsp. aur... 38 0.77 CP000931_1369(CP000931|pid:none) Shewanella halifaxensis HAW-EB4... 38 0.77 CP000891_3120(CP000891|pid:none) Shewanella baltica OS195, compl... 38 1.0 CP000826_3642(CP000826|pid:none) Serratia proteamaculans 568, co... 38 1.0 CP001010_473(CP001010|pid:none) Polynucleobacter necessarius sub... 38 1.0 GM956834_1(GM956834|pid:none) Sequence 3788 from Patent WO200814... 38 1.0 CP001616_2261(CP001616|pid:none) Tolumonas auensis DSM 9187, com... 38 1.0 CP001614_2271(CP001614|pid:none) Teredinibacter turnerae T7901, ... 38 1.0 AE002160_225(AE002160|pid:none) Chlamydia muridarum Nigg, comple... 38 1.0 CP001104_1959(CP001104|pid:none) Eubacterium eligens ATCC 27750,... 38 1.0 CP000140_2491(CP000140|pid:none) Parabacteroides distasonis ATCC... 38 1.0 FM954972_596(FM954972|pid:none) Vibrio splendidus LGP32 chromoso... 37 1.3 CP001600_837(CP001600|pid:none) Edwardsiella ictaluri 93-146, co... 37 1.3 CP001078_529(CP001078|pid:none) Clostridium botulinum E3 str. Al... 37 1.3 AP009510_587(AP009510|pid:none) Uncultured Termite group 1 bacte... 37 1.3 CP000469_1228(CP000469|pid:none) Shewanella sp. ANA-3, complete ... 37 1.3 BA000039_177(BA000039|pid:none) Thermosynechococcus elongatus BP... 37 1.3 (P21335) RecName: Full=tRNA-specific adenosine deaminase; ... 37 1.7 CP001146_1066(CP001146|pid:none) Dictyoglomus thermophilum H-6-1... 37 1.7 CT573071_1128(CT573071|pid:none) Kuenenia stuttgartiensis genome... 37 1.7 AM910985_190(AM910985|pid:none) Plasmodium knowlesi strain H chr... 37 1.7 AE015929_327(AE015929|pid:none) Staphylococcus epidermidis ATCC ... 37 1.7 BX548174_1045(BX548174|pid:none) Prochlorococcus marinus MED4 co... 37 1.7 (Q9S7I0) RecName: Full=Uncharacterized protein At1g68720; &AC00... 37 1.7 AM181176_1041(AM181176|pid:none) Pseudomonas fluorescens SBW25 c... 37 1.7 CP000481_2014(CP000481|pid:none) Acidothermus cellulolyticus 11B... 37 2.2 CP000863_1616(CP000863|pid:none) Acinetobacter baumannii ACICU, ... 37 2.2 AE003849_1009(AE003849|pid:none) Xylella fastidiosa 9a5c, comple... 37 2.2 CP000139_1826(CP000139|pid:none) Bacteroides vulgatus ATCC 8482,... 37 2.2 AP006841_1634(AP006841|pid:none) Bacteroides fragilis YCH46 DNA,... 37 2.2 CP001618_1660(CP001618|pid:none) Beutenbergia cavernae DSM 12333... 37 2.2 AM420293_1230(AM420293|pid:none) Saccharopolyspora erythraea NRR... 37 2.2 AE001362_162(AE001362|pid:none) Plasmodium falciparum 3D7 chromo... 37 2.2 BA000040_4780(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 37 2.2 CU459141_1947(CU459141|pid:none) Acinetobacter baumannii str. AY... 37 2.2 AM778943_51(AM778943|pid:none) Microcystis aeruginosa PCC 7806 g... 36 2.9 CP001252_1345(CP001252|pid:none) Shewanella baltica OS223, compl... 36 2.9 AM398681_272(AM398681|pid:none) Flavobacterium psychrophilum JIP... 36 2.9 CP000454_3398(CP000454|pid:none) Arthrobacter sp. FB24, complete... 36 2.9 AE016853_1422(AE016853|pid:none) Pseudomonas syringae pv. tomato... 36 2.9 AY658017_1(AY658017|pid:none) Synthetic construct Peudomonas aer... 36 2.9 CP000232_25(CP000232|pid:none) Moorella thermoacetica ATCC 39073... 36 2.9 AE004091_3766(AE004091|pid:none) Pseudomonas aeruginosa PAO1, co... 36 2.9 CP001032_3639(CP001032|pid:none) Opitutus terrae PB90-1, complet... 36 2.9 GM956640_1(GM956640|pid:none) Sequence 3594 from Patent WO200814... 36 3.8 CP000555_774(CP000555|pid:none) Methylibium petroleiphilum PM1, ... 36 3.8 BX908798_648(BX908798|pid:none) Parachlamydia-related symbiont U... 36 3.8 AJ006764_1(AJ006764|pid:none) Cicer arietinum mRNA for putative ... 36 3.8 CU468230_1656(CU468230|pid:none) Acinetobacter baumannii str. SD... 36 3.8 FM177140_1308(FM177140|pid:none) Lactobacillus casei BL23 comple... 36 3.8 CP000878_1025(CP000878|pid:none) Prochlorococcus marinus str. MI... 36 3.8 GM956802_1(GM956802|pid:none) Sequence 3756 from Patent WO200814... 36 3.8 CP000423_1061(CP000423|pid:none) Lactobacillus casei ATCC 334, c... 36 3.8 CP000744_1337(CP000744|pid:none) Pseudomonas aeruginosa PA7, com... 36 3.8 CP001108_1498(CP001108|pid:none) Prosthecochloris aestuarii DSM ... 36 3.8 AE015924_649(AE015924|pid:none) Porphyromonas gingivalis W83, co... 35 5.0 CP000108_189(CP000108|pid:none) Chlorobium chlorochromatii CaD3,... 35 5.0 X95938_2(X95938|pid:none) P.gingivalis rnhB & pgaA genes & orfs ... 35 5.0 CP000453_1011(CP000453|pid:none) Alkalilimnicola ehrlichii MLHE-... 35 5.0 BT051258_1(BT051258|pid:none) Medicago truncatula clone MTYF1_F2... 35 5.0 CP000509_272(CP000509|pid:none) Nocardioides sp. JS614, complete... 35 5.0 (O34598) RecName: Full=Guanine deaminase; Short=GDEase;... 35 5.0 AM260479_2649(AM260479|pid:none) Ralstonia eutropha H16 chromoso... 35 5.0 CP000088_25(CP000088|pid:none) Thermobifida fusca YX, complete g... 35 5.0 AL844508_102(AL844508|pid:none) Plasmodium falciparum 3D7 chromo... 35 6.5 CP001055_105(CP001055|pid:none) Elusimicrobium minutum Pei191, c... 35 6.5 AL844505_153(AL844505|pid:none) Plasmodium falciparum 3D7 chromo... 35 6.5 CP001032_4564(CP001032|pid:none) Opitutus terrae PB90-1, complet... 35 6.5 CP000473_6337(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 35 6.5 CP001034_14(CP001034|pid:none) Natranaerobius thermophilus JW/NM... 35 6.5 AY714675_1(AY714675|pid:none) Epizootic hemorrhagic disease viru... 35 6.5 AY714694_1(AY714694|pid:none) Epizootic hemorrhagic disease viru... 35 6.5 CU928175_673(CU928175|pid:none) Zygosaccharomyces rouxii strain ... 35 6.5 CP000539_2188(CP000539|pid:none) Acidovorax sp. JS42, complete g... 35 6.5 AM889285_1426(AM889285|pid:none) Gluconacetobacter diazotrophicu... 35 6.5 CP001392_1562(CP001392|pid:none) Diaphorobacter sp. TPSY, comple... 35 6.5 AE016828_1186(AE016828|pid:none) Coxiella burnetii RSA 493, comp... 35 6.5 CP000962_1342(CP000962|pid:none) Clostridium botulinum A3 str. L... 35 8.5 CP001083_1259(CP001083|pid:none) Clostridium botulinum Ba4 str. ... 35 8.5 AM412317_1283(AM412317|pid:none) Clostridium botulinum A str. AT... 35 8.5 CP000728_1269(CP000728|pid:none) Clostridium botulinum F str. La... 35 8.5 AF086638_3(AF086638|pid:none) Pseudomonas putida CumA precursor ... 35 8.5 AY714674_1(AY714674|pid:none) Epizootic hemorrhagic disease viru... 35 8.5 AM946015_1149(AM946015|pid:none) Streptococcus uberis 0140J comp... 35 8.5 CP000312_2536(CP000312|pid:none) Clostridium perfringens SM101, ... 35 8.5
>AC116977_84(AC116977|pid:none) Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. Length = 322
Score = 152 bits (384), Expect = 3e-35 Identities = 78/207 (37%), Positives = 121/207 (58%), Gaps = 1/207 (0%) Frame = +3
Query: 165 NNSVLGNCEKNQTAKYKKISSKYGNEEIKEITTNQLSKDQLEKHEMFMKIALEIAIKSKV 344 N S +G C Q A +K + ++ +T L +L HE M L IA + Sbjct: 27 NTSTIGECTATQKASWKP------TDNVQVLTPADLDPQKLGMHEERMAYVLAIAKQQNK 80
Query: 345 KFVSIIVSPDDRVLCSGIFS-KENAILHSELVAITNCSSSHKMVTFENHTIYSTAEPDSL 521 KFV+ I + ++C G+ + K N I H E+VAI NC++ H + +F N+T+Y++ EP ++ Sbjct: 81 KFVASIYHQNGTLMCLGVNTGKPNIISHGEIVAINNCTALHGITSFTNYTLYTSGEPCAM 140
Query: 522 SSSAIVWARFKQVVYGSSIKHLYCNACFSSLPIDSTYIFSRGYGIGVENIQLVAGVLQDQ 701 S+A++WA FK +V+G+ L C C S++P+DS+YIF R YG+ +++ GVL+ + Sbjct: 141 CSAALLWADFKTIVWGTFNSDLLCKICMSNIPMDSSYIFGRYYGLRASPPRVIGGVLRTE 200
Query: 702 TDANFGSYCNSSISSVYKTNPQCKCKN 782 DA FGSYC S +S+Y PQC C N Sbjct: 201 ADAWFGSYC-SKPTSIYYIKPQCVCTN 226
Lambda K H 0.318 0.134 0.401
Gapped Lambda K H 0.267 0.0410 0.140
Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3236559 Number of Hits to DB: 1,502,056,341 Number of extensions: 26817036 Number of successful extensions: 93410 Number of sequences better than 10.0: 227 Number of HSP's gapped: 92235 Number of HSP's successfully gapped: 228 Length of query: 465 Length of database: 1,051,180,864 Length adjustment: 132 Effective length of query: 333 Effective length of database: 623,955,076 Effective search space: 207777040308 Effective search space used: 207777040308 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 32 (16.9 bits)
|
PSORT |
|
VS (DIR, S) |
2 |
VH (FL, L) |
0 |
VF (FL, S) |
3 |
AH (FL, L) |
0 |
AF (FL, S) |
10 |
SL (DIR, L) |
2 |
SS (DIR, S) |
1 |
SH (FL, L) |
0 |
SF (FL, S) |
4 |
CH (FL, L) |
1 |
CF (FL, S) |
2 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |