Contig-U13881-1 |
Contig ID |
Contig-U13881-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
no gap |
Contig length |
1266 |
Chromosome number (1..6, M) |
5 |
Chromosome length |
5062330 |
Start point |
4997639 |
End point |
4996372 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
35 |
Number of EST |
47 |
Link to clone list |
U13881 |
List of clone(s) |
est1=VFO778E,1,1096 est2=VFO676F,14,529 est3=SFI316F,18,554 est4=SFH128F,21,591 est5=SFC349F,28,491 est6=AFN530F,30,534 est7=SFD391F,30,680 est8=SHA248E,30,993 est9=VFC715E,30,1100 est10=VFG273E,30,1100 est11=VFG496E,30,976 est12=VFJ755E,30,940 est13=VFL607E,31,978 est14=AFC186F,32,489 est15=SFK349F,32,710 est16=VFL325E,32,918 est17=VFE152F,33,532 est18=VFE514F,33,525 est19=VFI288E,33,749 est20=VFO336F,33,603 est21=SFA102F,38,589 est22=AFK569E,40,917 est23=SFD430E,40,983 est24=SFG804F,46,551 est25=SFC194F,48,222 est26=SSI421F,48,609 est27=VFJ841E,48,1092 est28=VFB756E,49,1098 est29=SFC615E,64,916 est30=SFL317E,83,814 est31=VFM217F,127,340 est32=SFI416F,295,647 est33=VFM217Z,402,1099 est34=SFD391Z,465,1148 est35=SFC194Z,477,939 est36=VFO676Z,481,939 est37=VSB202Z,485,1114 est38=SFI416Z,490,609 est39=SFC349Z,497,1099 est40=SFG804Z,508,985 est41=SFD511Z,509,918 est42=AFN530Z,516,897 est43=VFE152Z,520,938 est44=AFC186Z,556,975 est45=VFE514Z,663,917 est46=AFK256Z,757,878 est47=SSI421Z,855,1267
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Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.12.14 |
Homology vs DNA |
Query= Contig-U13881-1 (Contig-U13881-1Q) /CSM_Contig/Contig-U13881-1Q.Seq.d (1266 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AU261887) Dictyostelium discoideum vegetative cDNA clone:VS... 952 0.0 3 (BJ432924) Dictyostelium discoideum cDNA clone:ddv20b12, 3' ... 952 0.0 5 (BJ429735) Dictyostelium discoideum cDNA clone:ddv4p13, 3' e... 952 0.0 4 (BJ376110) Dictyostelium discoideum cDNA clone:ddc21p06, 3' ... 952 0.0 5 (BJ377460) Dictyostelium discoideum cDNA clone:ddc24l13, 3' ... 944 0.0 3 (BJ434793) Dictyostelium discoideum cDNA clone:ddv25a06, 3' ... 952 0.0 4 (BJ430130) Dictyostelium discoideum cDNA clone:ddv6n03, 3' e... 952 0.0 3 (BJ390197) Dictyostelium discoideum cDNA clone:dds21b13, 5' ... 505 0.0 3 (BJ431377) Dictyostelium discoideum cDNA clone:ddv13p24, 3' ... 934 0.0 2 (BJ377727) Dictyostelium discoideum cDNA clone:ddc25i17, 3' ... 906 0.0 2 (BJ399331) Dictyostelium discoideum cDNA clone:dds5b13, 3' e... 930 0.0 3 (BJ376016) Dictyostelium discoideum cDNA clone:ddc20k19, 3' ... 944 0.0 4 (BJ436351) Dictyostelium discoideum cDNA clone:ddv30l19, 3' ... 952 0.0 3 (BJ391580) Dictyostelium discoideum cDNA clone:dds24o12, 5' ... 505 0.0 3 (BJ360674) Dictyostelium discoideum cDNA clone:ddc7d10, 5' e... 505 0.0 2 (BJ388082) Dictyostelium discoideum cDNA clone:dds7f23, 5' e... 505 0.0 3 (BJ411505) Dictyostelium discoideum cDNA clone:ddv4p13, 5' e... 505 0.0 3 (BJ362301) Dictyostelium discoideum cDNA clone:ddc21p06, 5' ... 505 0.0 3 (BJ376336) Dictyostelium discoideum cDNA clone:ddc28j01, 3' ... 815 0.0 4 (BJ434538) Dictyostelium discoideum cDNA clone:ddv24m02, 3' ... 932 0.0 1 (BJ414734) Dictyostelium discoideum cDNA clone:ddv20b12, 5' ... 505 0.0 3 (BJ371978) Dictyostelium discoideum cDNA clone:ddc10m18, 3' ... 898 0.0 2 (BJ359352) Dictyostelium discoideum cDNA clone:ddc14b05, 5' ... 505 0.0 3 (BJ403225) Dictyostelium discoideum cDNA clone:dds24o12, 3' ... 896 0.0 1 (BJ431317) Dictyostelium discoideum cDNA clone:ddv13a20, 3' ... 839 0.0 4 (BJ328017) Dictyostelium discoideum cDNA clone:dda22i17, 5' ... 505 0.0 3 (BJ433066) Dictyostelium discoideum cDNA clone:ddv20n13, 3' ... 888 0.0 1 (BJ373729) Dictyostelium discoideum cDNA clone:ddc4a24, 3' e... 886 0.0 1 (BJ436330) Dictyostelium discoideum cDNA clone:ddv30g20, 3' ... 884 0.0 1 (BJ373793) Dictyostelium discoideum cDNA clone:ddc4c04, 3' e... 862 0.0 1 (BJ399417) Dictyostelium discoideum cDNA clone:dds5k23, 3' e... 854 0.0 1 (BJ399766) Dictyostelium discoideum cDNA clone:dds7l08, 3' e... 846 0.0 1 (BJ372762) Dictyostelium discoideum cDNA clone:ddc14b05, 3' ... 844 0.0 1 (BJ399479) Dictyostelium discoideum cDNA clone:dds6m04, 3' e... 835 0.0 1 (BJ399865) Dictyostelium discoideum cDNA clone:dds7f23, 3' e... 833 0.0 1 (BJ374330) Dictyostelium discoideum cDNA clone:ddc7d10, 3' e... 795 0.0 2 (BJ400629) Dictyostelium discoideum cDNA clone:dds14h02, 3' ... 829 0.0 1 (BJ413043) Dictyostelium discoideum cDNA clone:ddv13p24, 5' ... 505 0.0 3 (BJ363526) Dictyostelium discoideum cDNA clone:ddc27l01, 5' ... 505 0.0 3 (BJ412989) Dictyostelium discoideum cDNA clone:ddv13a20, 5' ... 505 0.0 3 (BJ411881) Dictyostelium discoideum cDNA clone:ddv6n03, 5' e... 505 0.0 3 (BJ417075) Dictyostelium discoideum cDNA clone:ddv29h09, 5' ... 505 0.0 3 (BJ361185) Dictyostelium discoideum cDNA clone:ddc16h04, 5' ... 505 0.0 3 (BJ341257) Dictyostelium discoideum cDNA clone:dda5k21, 3' e... 809 0.0 1 (BJ414065) Dictyostelium discoideum cDNA clone:ddv17o22, 5' ... 505 0.0 3 (BJ372693) Dictyostelium discoideum cDNA clone:ddc13o16, 3' ... 797 0.0 1 (BJ360775) Dictyostelium discoideum cDNA clone:ddc7f21, 5' e... 505 0.0 3 (BJ360062) Dictyostelium discoideum cDNA clone:ddc4c04, 5' e... 505 0.0 3 (BJ391147) Dictyostelium discoideum cDNA clone:dds15g07, 5' ... 505 0.0 3 (BJ359282) Dictyostelium discoideum cDNA clone:ddc13o16, 5' ... 505 0.0 3 (BJ415646) Dictyostelium discoideum cDNA clone:ddv23b07, 5' ... 490 0.0 3 (BJ358653) Dictyostelium discoideum cDNA clone:ddc10m18, 5' ... 505 0.0 3 (BJ363171) Dictyostelium discoideum cDNA clone:ddc25m07, 5' ... 505 0.0 3 (BJ417526) Dictyostelium discoideum cDNA clone:ddv30l19, 5' ... 505 0.0 3 (BJ415916) Dictyostelium discoideum cDNA clone:ddv24m02, 5' ... 505 0.0 3 (BJ376263) Dictyostelium discoideum cDNA clone:ddc21f21, 3' ... 781 0.0 1 (BJ374439) Dictyostelium discoideum cDNA clone:ddc7f21, 3' e... 779 0.0 1 (BJ343290) Dictyostelium discoideum cDNA clone:dda22i17, 3' ... 779 0.0 1 (BJ360172) Dictyostelium discoideum cDNA clone:ddc4a24, 5' e... 498 0.0 3 (BJ362227) Dictyostelium discoideum cDNA clone:ddc20k19, 5' ... 498 0.0 3 (BJ372046) Dictyostelium discoideum cDNA clone:ddc11e06, 3' ... 775 0.0 1 (BJ399918) Dictyostelium discoideum cDNA clone:dds8e03, 3' e... 771 0.0 1 (BJ433886) Dictyostelium discoideum cDNA clone:ddv23b07, 3' ... 767 0.0 1 (BJ431011) Dictyostelium discoideum cDNA clone:ddv9g13, 3' e... 763 0.0 1 (BJ374741) Dictyostelium discoideum cDNA clone:ddc16h04, 3' ... 763 0.0 1 (BJ387242) Dictyostelium discoideum cDNA clone:dds1c01, 5' e... 505 0.0 3 (BJ363219) Dictyostelium discoideum cDNA clone:ddc25i17, 5' ... 505 0.0 3 (BJ414865) Dictyostelium discoideum cDNA clone:ddv20n13, 5' ... 505 0.0 3 (BJ363718) Dictyostelium discoideum cDNA clone:ddc28j01, 5' ... 494 0.0 3 (BJ362028) Dictyostelium discoideum cDNA clone:ddc19f22, 5' ... 505 0.0 3 (BJ388559) Dictyostelium discoideum cDNA clone:dds6m04, 5' e... 505 0.0 3 (BJ375949) Dictyostelium discoideum cDNA clone:ddc20j16, 3' ... 710 0.0 1 (BJ362448) Dictyostelium discoideum cDNA clone:ddc21f21, 5' ... 505 0.0 3 (BJ389034) Dictyostelium discoideum cDNA clone:dds17p03, 5' ... 498 0.0 3 (BJ388011) Dictyostelium discoideum cDNA clone:dds7l08, 5' e... 505 0.0 3 (BJ361536) Dictyostelium discoideum cDNA clone:ddc17i13, 5' ... 505 0.0 3 (BJ390883) Dictyostelium discoideum cDNA clone:dds14h02, 5' ... 505 0.0 3 (BJ328489) Dictyostelium discoideum cDNA clone:dda28k07, 5' ... 505 0.0 3 (BJ412707) Dictyostelium discoideum cDNA clone:ddv9g13, 5' e... 505 0.0 3 (BJ417501) Dictyostelium discoideum cDNA clone:ddv30g20, 5' ... 505 0.0 3 (BJ361707) Dictyostelium discoideum cDNA clone:ddc18l07, 5' ... 505 0.0 3 (BJ409819) Dictyostelium discoideum cDNA clone:ddv10k03, 5' ... 505 0.0 3 (BJ390594) Dictyostelium discoideum cDNA clone:dds23b05, 5' ... 505 0.0 4 (BJ375143) Dictyostelium discoideum cDNA clone:ddc17i13, 3' ... 462 e-173 2 (BJ362177) Dictyostelium discoideum cDNA clone:ddc20j16, 5' ... 505 e-170 2 (BJ387861) Dictyostelium discoideum cDNA clone:dds5b13, 5' e... 505 e-170 2 (BJ324349) Dictyostelium discoideum cDNA clone:dda5k21, 5' e... 505 e-168 2 (BJ401362) Dictyostelium discoideum cDNA clone:dds23b05, 3' ... 573 e-159 1 (BJ389035) Dictyostelium discoideum cDNA clone:dds17p04, 5' ... 319 e-146 2 (BJ345657) Dictyostelium discoideum cDNA clone:dda28k07, 3' ... 529 e-146 1 (BJ427939) Dictyostelium discoideum cDNA clone:ddv10k03, 3' ... 474 e-129 1 (BJ359373) Dictyostelium discoideum cDNA clone:ddc14j05, 5' ... 299 e-106 2 (BJ432186) Dictyostelium discoideum cDNA clone:ddv17o22, 3' ... 375 3e-99 1 (BJ359364) Dictyostelium discoideum cDNA clone:ddc14f05, 5' ... 270 2e-97 2 (BJ416110) Dictyostelium discoideum cDNA clone:ddv25a06, 5' ... 349 2e-91 1 (C90425) Dictyostelium discoideum slug cDNA, clone SSI421. 214 5e-88 4 (AU073810) Dictyostelium discoideum slug cDNA, clone SSI421. 256 2e-84 2 (BJ359379) Dictyostelium discoideum cDNA clone:ddc14m05, 5' ... 228 4e-55 1 (BJ345125) Dictyostelium discoideum cDNA clone:dda21o14, 3' ... 111 9e-47 2 (BJ387923) Dictyostelium discoideum cDNA clone:dds5k23, 5' e... 121 6e-42 2
>(AU261887) Dictyostelium discoideum vegetative cDNA clone:VSB202, 3' end single read. Length = 630
Score = 952 bits (480), Expect(3) = 0.0 Identities = 480/480 (100%) Strand = Plus / Plus
Query: 485 atgttagtcaaccacaagaagacattgtaaatagagaacatagtgtgccagataatgaaa 544 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3 atgttagtcaaccacaagaagacattgtaaatagagaacatagtgtgccagataatgaaa 62
Query: 545 gaagtaaaacctctgttgttgcatcaattattgcagcaggttatagtgttggacaagacg 604 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 63 gaagtaaaacctctgttgttgcatcaattattgcagcaggttatagtgttggacaagacg 122
Query: 605 ctgccattaaagcacgtcaagttgatgaagaacatatgatttcattaaaacttaaagttg 664 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 123 ctgccattaaagcacgtcaagttgatgaagaacatatgatttcattaaaacttaaagttg 182
Query: 665 gagctgaagctgtcaaagcaaaagcaaatgaaattgataataaccttcacatttctgaga 724 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 183 gagctgaagctgtcaaagcaaaagcaaatgaaattgataataaccttcacatttctgaga 242
Query: 725 gtgccgctgccattaagggtgcagttgtagagagagcaaatgcactcgatgaaagattcc 784 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 243 gtgccgctgccattaagggtgcagttgtagagagagcaaatgcactcgatgaaagattcc 302
Query: 785 aaatctcaggtttctttaagagtgcaagtgatatgatctctcaacaagcttccaatttaa 844 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 303 aaatctcaggtttctttaagagtgcaagtgatatgatctctcaacaagcttccaatttaa 362
Query: 845 tgaaagcagccgaagaaaatagtacagtttcaccaatcgtaaataaagtttcaagttttg 904 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 363 tgaaagcagccgaagaaaatagtacagtttcaccaatcgtaaataaagtttcaagttttg 422
Query: 905 gtacttttattaaacaagaagttcaacaaattcaaactgaaacctctcaagcaattgatg 964 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 423 gtacttttattaaacaagaagttcaacaaattcaaactgaaacctctcaagcaattgatg 482
Score = 95.6 bits (48), Expect(3) = 0.0 Identities = 48/48 (100%) Strand = Plus / Plus
Query: 1061 actcaaatatagatttttcaaaagaacaataagtttattatttttatg 1108 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 579 actcaaatatagatttttcaaaagaacaataagtttattatttttatg 626
Score = 58.0 bits (29), Expect(3) = 0.0 Identities = 29/29 (100%) Strand = Plus / Plus
Query: 982 ggtattaactcttcaaatgatactgaatt 1010 ||||||||||||||||||||||||||||| Sbjct: 500 ggtattaactcttcaaatgatactgaatt 528
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,249,373,455 Number of extensions: 78901067 Number of successful extensions: 6869926 Number of sequences better than 10.0: 146 Length of query: 1266 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1242 Effective length of database: 97,308,875,965 Effective search space: 120857623948530 Effective search space used: 120857623948530 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7. 8 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
1 |
VH (FL, L) |
0 |
VF (FL, S) |
15 |
AH (FL, L) |
0 |
AF (FL, S) |
4 |
SL (DIR, L) |
0 |
SS (DIR, S) |
1 |
SH (FL, L) |
1 |
SF (FL, S) |
13 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |