Contig-U13881-1
Contig ID Contig-U13881-1
Contig update 2002.12.18
Contig sequence
>Contig-U13881-1 (Contig-U13881-1Q) /CSM_Contig/Contig-U13881-1Q.Seq.d
TTTCCTTTTTTTTATTTTTTATTTTTTTTAATAAAAACTCAAAACAACAC
ACACTTACACAATATATTTACTATTTTAAATTATATCTAAATCCGACAAC
AACAATAACAATAACAACAACAACCCATTCTTTAATATACATATAAATAT
AAAATAATGAATCCAGATTTCACAGTTTATGTTTCAAATATTTCATTGAA
AGCAAATACTAAAACAGTTTCAGATTTTTTCTCATTTTGTGGAAGAATTG
TTAATTTATTTTTAAGAAATGACCCAACTGGTAGTTCACAACAAGCAATA
GTAGTATTTGAATCAGATTCAGCTGCAAAAACAGCTTTATTATTAACAAA
TGCATTAATTGTAGATAAAGTAATTCAAGTTGTTCAATTTACACCAGAAT
TAGAGTTTGATTTAACACAACAATTTTCTCAACAACAACAATTTAATAAT
CTCAGTGGTGAACAACAACCACAACAACAACAATATGTTAGTCAACCACA
AGAAGACATTGTAAATAGAGAACATAGTGTGCCAGATAATGAAAGAAGTA
AAACCTCTGTTGTTGCATCAATTATTGCAGCAGGTTATAGTGTTGGACAA
GACGCTGCCATTAAAGCACGTCAAGTTGATGAAGAACATATGATTTCATT
AAAACTTAAAGTTGGAGCTGAAGCTGTCAAAGCAAAAGCAAATGAAATTG
ATAATAACCTTCACATTTCTGAGAGTGCCGCTGCCATTAAGGGTGCAGTT
GTAGAGAGAGCAAATGCACTCGATGAAAGATTCCAAATCTCAGGTTTCTT
TAAGAGTGCAAGTGATATGATCTCTCAACAAGCTTCCAATTTAATGAAAG
CAGCCGAAGAAAATAGTACAGTTTCACCAATCGTAAATAAAGTTTCAAGT
TTTGGTACTTTTATTAAACAAGAAGTTCAACAAATTCAAACTGAAACCTC
TCAAGCAATTGATGAAAAAAATAAAGAAAAAGGTATTAACTCTTCAAATG
ATACTGAATTACAACAACAACAACAACAACAACAACAACAACCAGAACAA
CCAGAACAATACTCAAATATAGATTTTTCAAAAGAACAATAAGTTTATTA
TTTTTATGAAAAAAAAAAAAAAAAAAAAAAAAAATACTCAAAAATGTAAA
TCTATATAATCATCTCTTTTAAAAGTTTAGTTTAATTTATAAATAGTATA
CCTCTTTTATTTTTTCAATATATTTAAAAAGTAAAATAAAAAAAATAAAA
ATAAAGAAACAATTGT

Gap no gap
Contig length 1266
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 4997639
End point 4996372
Strand (PLUS/MINUS) MINUS
Number of clones 35
Number of EST 47
Link to clone list U13881
List of clone(s)

est1=VFO778E,1,1096
est2=VFO676F,14,529
est3=SFI316F,18,554
est4=SFH128F,21,591
est5=SFC349F,28,491
est6=AFN530F,30,534
est7=SFD391F,30,680
est8=SHA248E,30,993
est9=VFC715E,30,1100
est10=VFG273E,30,1100
est11=VFG496E,30,976
est12=VFJ755E,30,940
est13=VFL607E,31,978
est14=AFC186F,32,489
est15=SFK349F,32,710
est16=VFL325E,32,918
est17=VFE152F,33,532
est18=VFE514F,33,525
est19=VFI288E,33,749
est20=VFO336F,33,603
est21=SFA102F,38,589
est22=AFK569E,40,917
est23=SFD430E,40,983
est24=SFG804F,46,551
est25=SFC194F,48,222
est26=SSI421F,48,609
est27=VFJ841E,48,1092
est28=VFB756E,49,1098
est29=SFC615E,64,916
est30=SFL317E,83,814
est31=VFM217F,127,340
est32=SFI416F,295,647
est33=VFM217Z,402,1099
est34=SFD391Z,465,1148
est35=SFC194Z,477,939
est36=VFO676Z,481,939
est37=VSB202Z,485,1114
est38=SFI416Z,490,609
est39=SFC349Z,497,1099
est40=SFG804Z,508,985
est41=SFD511Z,509,918
est42=AFN530Z,516,897
est43=VFE152Z,520,938
est44=AFC186Z,556,975
est45=VFE514Z,663,917
est46=AFK256Z,757,878
est47=SSI421Z,855,1267
Translated Amino Acid sequence
fpffyflffliktqnnthlhniftilnyi*irqqq*q*qqqpil*YTYKYKIMNPDFTVY
VSNISLKANTKTVSDFFSFCGRIVNLFLRNDPTGSSQQAIVVFESDSAAKTALLLTNALI
VDKVIQVVQFTPELEFDLTQQFSQQQQFNNLSGEQQPQQQQYVSQPQEDIVNREHSVPDN
ERSKTSVVASIIAAGYSVGQDAAIKARQVDEEHMISLKLKVGAEAVKAKANEIDNNLHIS
ESAAAIKGAVVERANALDERFQISGFFKSASDMISQQASNLMKAAEENSTVSPIVNKVSS
FGTFIKQEVQQIQTETSQAIDEKNKEKGINSSNDTELQQQQQQQQQQPEQPEQYSNIDFS
KEQ*vyyfyekkkkkkkkyskm*iyiiisfkslv*finsipllffqyi*kvk*kk*k*rn
nc


Translated Amino Acid sequence (All Frames)
Frame A:
fpffyflffliktqnnthlhniftilnyi*irqqq*q*qqqpil*YTYKYKIMNPDFTVY
VSNISLKANTKTVSDFFSFCGRIVNLFLRNDPTGSSQQAIVVFESDSAAKTALLLTNALI
VDKVIQVVQFTPELEFDLTQQFSQQQQFNNLSGEQQPQQQQYVSQPQEDIVNREHSVPDN
ERSKTSVVASIIAAGYSVGQDAAIKARQVDEEHMISLKLKVGAEAVKAKANEIDNNLHIS
ESAAAIKGAVVERANALDERFQISGFFKSASDMISQQASNLMKAAEENSTVSPIVNKVSS
FGTFIKQEVQQIQTETSQAIDEKNKEKGINSSNDTELQQQQQQQQQQPEQPEQYSNIDFS
KEQ*vyyfyekkkkkkkkyskm*iyiiisfkslv*finsipllffqyi*kvk*kk*k*rn
nc


Frame B:
flffifyff**klktthtytiyllf*iisksdnnnnnnnnnpffnihinik**iqisqfm
fqifh*kqilkqfqifshfveelliyf*emtqlvvhnkq**ylnqiqlqkqlyy*qmh*l
*ik*fklfnlhqn*sli*hnnflnnnnliisvvnnnhnnnnmlvnhkktl*ienivcqim
kevkplllhqllqqvivldktlplkhvklmkni*fh*nlklelklskqkqmkliitftfl
rvplplrvql*reqmhsmkdsksqvslrvqvi*slnklpi**kqpkkivqfhqs*ikfqv
lvlllnkkfnkfklkplkqlmkkikkkvltlqmilnynnnnnnnnnnqnnqnntqi*ifq
knnkfiifmkkkkkkkkntqkcksi*ssllkv*fnl*ivylfyffnifkk*nkknknket
i


Frame C:
sfflffiffnknskqhtltqyiyyfklylnptttititttthsliyi*i*nnesrfhslc
fkyfiesky*nsfrfflilwknc*fifkk*pnw*fttsnssi*irfscknsfiinkcinc
r*snsscsiytrirv*fnttifsttti**sqw*tttttttic*sttrrhck*rt*car**
kk*nlcccinycsrl*cwtrrch*stss**rtydfikt*sws*scqsksk*n***pshf*
ecrch*gcscreskctr*kipnlrfl*eck*ydlstsfqfnessrrk*ysftnrk*sfkf
wyfy*trsstnsn*nlssn**kk*rkry*lfk*y*itttttttttttrttrtilkyrffk
rtisllfl*kkkkkkkkilknvnlynhlf*kfsliyk*ytsfifsiylkskikkikikkq
l


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U13881-1 (Contig-U13881-1Q)
/CSM_Contig/Contig-U13881-1Q.Seq.d
(1266 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U13881-1 (Contig-U13881-1Q) /CSM_Contig/Conti... 1003 0.0
Contig-U14176-1 (Contig-U14176-1Q) /CSM_Contig/Conti... 967 0.0
Contig-U11841-1 (Contig-U11841-1Q) /CSM_Contig/Conti... 38 0.023
Contig-U06662-1 (Contig-U06662-1Q) /CSM_Contig/Conti... 38 0.023
Contig-U04558-1 (Contig-U04558-1Q) /CSM_Contig/Conti... 38 0.023
Contig-U04429-1 (Contig-U04429-1Q) /CSM_Contig/Conti... 38 0.023
Contig-U01745-1 (Contig-U01745-1Q) /CSM_Contig/Conti... 38 0.023
Contig-U14167-1 (Contig-U14167-1Q) /CSM_Contig/Conti... 36 0.090
Contig-U12907-1 (Contig-U12907-1Q) /CSM_Contig/Conti... 36 0.090
Contig-U12536-1 (Contig-U12536-1Q) /CSM_Contig/Conti... 36 0.090

>Contig-U13881-1 (Contig-U13881-1Q) /CSM_Contig/Contig-U13881-1Q.Seq.d
Length = 1266

Score = 1003 bits (506), Expect = 0.0
Identities = 520/527 (98%)
Strand = Plus / Plus


Query: 484 tatgttagtcaaccacaagaagacattgtaaatagagaacatagtgtgccagataatgaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tatgttagtcaaccacaagaagacattgtaaatagagaacatagtgtgccagataatgaa 543


Query: 544 agaagtaaaacctctgttgttgcatcaattattgcagcaggttatagtgttggacaagac 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 agaagtaaaacctctgttgttgcatcaattattgcagcaggttatagtgttggacaagac 603


Query: 604 gctgccattaaagcacgtcaagttgatgaagaacatatgatttcattaaaacttaaagtt 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 gctgccattaaagcacgtcaagttgatgaagaacatatgatttcattaaaacttaaagtt 663


Query: 664 ggagctgaagctgtcaaagcaaaagcaaatgaaattgataataaccttcacatttctgag 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ggagctgaagctgtcaaagcaaaagcaaatgaaattgataataaccttcacatttctgag 723


Query: 724 agtgccgctgccattaagggtgcagttgtagagagagcaaatgcactcgatgaaagattc 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 agtgccgctgccattaagggtgcagttgtagagagagcaaatgcactcgatgaaagattc 783


Query: 784 caaatctcaggtttctttaagagtgcaagtgatatgatctctcaacaagcttccaattta 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 caaatctcaggtttctttaagagtgcaagtgatatgatctctcaacaagcttccaattta 843


Query: 844 atgaaagcagccgaagaaaatagtacagtttcaccaatcgtaaataaagtttcaagtttt 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 atgaaagcagccgaagaaaatagtacagtttcaccaatcgtaaataaagtttcaagtttt 903


Query: 904 ggtacttttattaaacaagaagttcaacaaattcaaactgaaacctctcaagcaattgat 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 ggtacttttattaaacaagaagttcaacaaattcaaactgaaacctctcaagcaattgat 963


Query: 964 gnnnnnnntaaagaaaaaggtattaactcttcaaatgatactgaatt 1010
| |||||||||||||||||||||||||||||||||||||||
Sbjct: 964 gaaaaaaataaagaaaaaggtattaactcttcaaatgatactgaatt 1010


Score = 571 bits (288), Expect = e-163
Identities = 288/288 (100%)
Strand = Plus / Plus


Query: 125 ccattctttaatatacatataaatataaaataatgaatccagatttcacagtttatgttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ccattctttaatatacatataaatataaaataatgaatccagatttcacagtttatgttt 184


Query: 185 caaatatttcattgaaagcaaatactaaaacagtttcagattttttctcattttgtggaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 caaatatttcattgaaagcaaatactaaaacagtttcagattttttctcattttgtggaa 244


Query: 245 gaattgttaatttatttttaagaaatgacccaactggtagttcacaacaagcaatagtag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gaattgttaatttatttttaagaaatgacccaactggtagttcacaacaagcaatagtag 304


Query: 305 tatttgaatcagattcagctgcaaaaacagctttattattaacaaatgcattaattgtag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tatttgaatcagattcagctgcaaaaacagctttattattaacaaatgcattaattgtag 364


Query: 365 ataaagtaattcaagttgttcaatttacaccagaattagagtttgatt 412
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ataaagtaattcaagttgttcaatttacaccagaattagagtttgatt 412


Score = 178 bits (90), Expect = 1e-44
Identities = 90/90 (100%)
Strand = Plus / Plus


Query: 1135 tactcaaaaatgtaaatctatataatcatctcttttaaaagtttagtttaatttataaat 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1135 tactcaaaaatgtaaatctatataatcatctcttttaaaagtttagtttaatttataaat 1194


Query: 1195 agtatacctcttttattttttcaatatatt 1224
||||||||||||||||||||||||||||||
Sbjct: 1195 agtatacctcttttattttttcaatatatt 1224


Score = 131 bits (66), Expect = 2e-30
Identities = 66/66 (100%)
Strand = Plus / Plus


Query: 1043 cagaacaaccagaacaatactcaaatatagatttttcaaaagaacaataagtttattatt 1102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1043 cagaacaaccagaacaatactcaaatatagatttttcaaaagaacaataagtttattatt 1102


Query: 1103 tttatg 1108
||||||
Sbjct: 1103 tttatg 1108


Score = 131 bits (66), Expect = 2e-30
Identities = 66/66 (100%)
Strand = Plus / Plus


Query: 30 aataaaaactcaaaacaacacacacttacacaatatatttactattttaaattatatcta 89
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30 aataaaaactcaaaacaacacacacttacacaatatatttactattttaaattatatcta 89


Query: 90 aatccg 95
||||||
Sbjct: 90 aatccg 95


>Contig-U14176-1 (Contig-U14176-1Q) /CSM_Contig/Contig-U14176-1Q.Seq.d
Length = 1253

Score = 967 bits (488), Expect = 0.0
Identities = 519/529 (98%), Gaps = 2/529 (0%)
Strand = Plus / Plus


Query: 484 tatgttagtcaaccacaagaagacattgtaaatagagaacatagtgtgccagataatgaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tatgttagtcaaccacaagaagacattgtaaatagagaacatagtgtgccagataatgaa 583


Query: 544 agaagtaaaacctctgttgttgcatcaattattgcagcaggttatagtgttggacaagac 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 agaagtaaaacctctgttgttgcatcaattattgcagcaggttatagtgttggacaagac 643


Query: 604 gctgccattaaagcacgtcaagttgatgaagaacatatgatttcattaaaacttaaagtt 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 gctgccattaaagcacgtcaagttgatgaagaacatatgatttcattaaaacttaaagtt 703


Query: 664 ggagctgaagctgtcaaagcaaaagcaaatgaaattgataataaccttcacatttctgag 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 ggagctgaagctgtcaaagcaaaagcaaatgaaattgataataaccttcacatttctgag 763


Query: 724 agtgccgctgccattaagggtgcagttgtagagagagcaaatgcactcgatgaaagattc 783
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 764 agtgccgctgccattaagggtgcagttgtagagagagcaaatgcactcgatgaaagatcc 823


Query: 784 caaatctcaggtttctttaagagtgc-aagtgatatgatctctcaacaagcttccaattt 842
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 824 caaatctcaggtttctttaagagtgcaaagtgatatgatctctcaacaagcttccaattt 883


Query: 843 aatgaaagcagccgaagaaaatagtacagtttcaccaatcgtaaataaagtttcaagttt 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 aatgaaagcagccgaagaaaatagtacagtttcaccaatcgtaaataaagtttcaagttt 943


Query: 903 tggtacttttattaaacaagaagttcaacaaattcaaactgaaacct-ctcaagcaattg 961
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 944 tggtacttttattaaacaagaagttcaacaaattcaaactgaaacctgctcaagcaattg 1003


Query: 962 atgnnnnnnntaaagaaaaaggtattaactcttcaaatgatactgaatt 1010
||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1004 atgaaaaaaataaagaaaaaggtattaactcttcaaatgatactgaatt 1052


Score = 571 bits (288), Expect = e-163
Identities = 288/288 (100%)
Strand = Plus / Plus


Query: 125 ccattctttaatatacatataaatataaaataatgaatccagatttcacagtttatgttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 ccattctttaatatacatataaatataaaataatgaatccagatttcacagtttatgttt 224


Query: 185 caaatatttcattgaaagcaaatactaaaacagtttcagattttttctcattttgtggaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 caaatatttcattgaaagcaaatactaaaacagtttcagattttttctcattttgtggaa 284


Query: 245 gaattgttaatttatttttaagaaatgacccaactggtagttcacaacaagcaatagtag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 gaattgttaatttatttttaagaaatgacccaactggtagttcacaacaagcaatagtag 344


Query: 305 tatttgaatcagattcagctgcaaaaacagctttattattaacaaatgcattaattgtag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tatttgaatcagattcagctgcaaaaacagctttattattaacaaatgcattaattgtag 404


Query: 365 ataaagtaattcaagttgttcaatttacaccagaattagagtttgatt 412
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ataaagtaattcaagttgttcaatttacaccagaattagagtttgatt 452


Score = 163 bits (82), Expect = 6e-40
Identities = 82/82 (100%)
Strand = Plus / Plus


Query: 1143 aatgtaaatctatataatcatctcttttaaaagtttagtttaatttataaatagtatacc 1202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1148 aatgtaaatctatataatcatctcttttaaaagtttagtttaatttataaatagtatacc 1207


Query: 1203 tcttttattttttcaatatatt 1224
||||||||||||||||||||||
Sbjct: 1208 tcttttattttttcaatatatt 1229


Score = 131 bits (66), Expect = 2e-30
Identities = 66/66 (100%)
Strand = Plus / Plus


Query: 30 aataaaaactcaaaacaacacacacttacacaatatatttactattttaaattatatcta 89
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aataaaaactcaaaacaacacacacttacacaatatatttactattttaaattatatcta 129


Query: 90 aatccg 95
||||||
Sbjct: 130 aatccg 135


Score = 111 bits (56), Expect = 2e-24
Identities = 62/64 (96%)
Strand = Plus / Plus


Query: 1043 cagaacaaccagaacaatactcaaatatagatttttcaaaagaacaataagtttattatt 1102
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1085 cagaacaaccagaacagcactcaaatatagatttttcaaaagaacaataagtttattatt 1144


Query: 1103 ttta 1106
||||
Sbjct: 1145 ttta 1148


>Contig-U11841-1 (Contig-U11841-1Q) /CSM_Contig/Contig-U11841-1Q.Seq.d
Length = 2210

Score = 38.2 bits (19), Expect = 0.023
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 928 caacaaattcaaactgaaa 946
|||||||||||||||||||
Sbjct: 1625 caacaaattcaaactgaaa 1643


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,206
Number of Sequences: 6905
Number of extensions: 22206
Number of successful extensions: 2615
Number of sequences better than 10.0: 258
length of query: 1266
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1250
effective length of database: 5,564,391
effective search space: 6955488750
effective search space used: 6955488750
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.14
Homology vs DNA
Query= Contig-U13881-1 (Contig-U13881-1Q) /CSM_Contig/Contig-U13881-1Q.Seq.d
(1266 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU261887) Dictyostelium discoideum vegetative cDNA clone:VS... 952 0.0 3
(BJ432924) Dictyostelium discoideum cDNA clone:ddv20b12, 3' ... 952 0.0 5
(BJ429735) Dictyostelium discoideum cDNA clone:ddv4p13, 3' e... 952 0.0 4
(BJ376110) Dictyostelium discoideum cDNA clone:ddc21p06, 3' ... 952 0.0 5
(BJ377460) Dictyostelium discoideum cDNA clone:ddc24l13, 3' ... 944 0.0 3
(BJ434793) Dictyostelium discoideum cDNA clone:ddv25a06, 3' ... 952 0.0 4
(BJ430130) Dictyostelium discoideum cDNA clone:ddv6n03, 3' e... 952 0.0 3
(BJ390197) Dictyostelium discoideum cDNA clone:dds21b13, 5' ... 505 0.0 3
(BJ431377) Dictyostelium discoideum cDNA clone:ddv13p24, 3' ... 934 0.0 2
(BJ377727) Dictyostelium discoideum cDNA clone:ddc25i17, 3' ... 906 0.0 2
(BJ399331) Dictyostelium discoideum cDNA clone:dds5b13, 3' e... 930 0.0 3
(BJ376016) Dictyostelium discoideum cDNA clone:ddc20k19, 3' ... 944 0.0 4
(BJ436351) Dictyostelium discoideum cDNA clone:ddv30l19, 3' ... 952 0.0 3
(BJ391580) Dictyostelium discoideum cDNA clone:dds24o12, 5' ... 505 0.0 3
(BJ360674) Dictyostelium discoideum cDNA clone:ddc7d10, 5' e... 505 0.0 2
(BJ388082) Dictyostelium discoideum cDNA clone:dds7f23, 5' e... 505 0.0 3
(BJ411505) Dictyostelium discoideum cDNA clone:ddv4p13, 5' e... 505 0.0 3
(BJ362301) Dictyostelium discoideum cDNA clone:ddc21p06, 5' ... 505 0.0 3
(BJ376336) Dictyostelium discoideum cDNA clone:ddc28j01, 3' ... 815 0.0 4
(BJ434538) Dictyostelium discoideum cDNA clone:ddv24m02, 3' ... 932 0.0 1
(BJ414734) Dictyostelium discoideum cDNA clone:ddv20b12, 5' ... 505 0.0 3
(BJ371978) Dictyostelium discoideum cDNA clone:ddc10m18, 3' ... 898 0.0 2
(BJ359352) Dictyostelium discoideum cDNA clone:ddc14b05, 5' ... 505 0.0 3
(BJ403225) Dictyostelium discoideum cDNA clone:dds24o12, 3' ... 896 0.0 1
(BJ431317) Dictyostelium discoideum cDNA clone:ddv13a20, 3' ... 839 0.0 4
(BJ328017) Dictyostelium discoideum cDNA clone:dda22i17, 5' ... 505 0.0 3
(BJ433066) Dictyostelium discoideum cDNA clone:ddv20n13, 3' ... 888 0.0 1
(BJ373729) Dictyostelium discoideum cDNA clone:ddc4a24, 3' e... 886 0.0 1
(BJ436330) Dictyostelium discoideum cDNA clone:ddv30g20, 3' ... 884 0.0 1
(BJ373793) Dictyostelium discoideum cDNA clone:ddc4c04, 3' e... 862 0.0 1
(BJ399417) Dictyostelium discoideum cDNA clone:dds5k23, 3' e... 854 0.0 1
(BJ399766) Dictyostelium discoideum cDNA clone:dds7l08, 3' e... 846 0.0 1
(BJ372762) Dictyostelium discoideum cDNA clone:ddc14b05, 3' ... 844 0.0 1
(BJ399479) Dictyostelium discoideum cDNA clone:dds6m04, 3' e... 835 0.0 1
(BJ399865) Dictyostelium discoideum cDNA clone:dds7f23, 3' e... 833 0.0 1
(BJ374330) Dictyostelium discoideum cDNA clone:ddc7d10, 3' e... 795 0.0 2
(BJ400629) Dictyostelium discoideum cDNA clone:dds14h02, 3' ... 829 0.0 1
(BJ413043) Dictyostelium discoideum cDNA clone:ddv13p24, 5' ... 505 0.0 3
(BJ363526) Dictyostelium discoideum cDNA clone:ddc27l01, 5' ... 505 0.0 3
(BJ412989) Dictyostelium discoideum cDNA clone:ddv13a20, 5' ... 505 0.0 3
(BJ411881) Dictyostelium discoideum cDNA clone:ddv6n03, 5' e... 505 0.0 3
(BJ417075) Dictyostelium discoideum cDNA clone:ddv29h09, 5' ... 505 0.0 3
(BJ361185) Dictyostelium discoideum cDNA clone:ddc16h04, 5' ... 505 0.0 3
(BJ341257) Dictyostelium discoideum cDNA clone:dda5k21, 3' e... 809 0.0 1
(BJ414065) Dictyostelium discoideum cDNA clone:ddv17o22, 5' ... 505 0.0 3
(BJ372693) Dictyostelium discoideum cDNA clone:ddc13o16, 3' ... 797 0.0 1
(BJ360775) Dictyostelium discoideum cDNA clone:ddc7f21, 5' e... 505 0.0 3
(BJ360062) Dictyostelium discoideum cDNA clone:ddc4c04, 5' e... 505 0.0 3
(BJ391147) Dictyostelium discoideum cDNA clone:dds15g07, 5' ... 505 0.0 3
(BJ359282) Dictyostelium discoideum cDNA clone:ddc13o16, 5' ... 505 0.0 3
(BJ415646) Dictyostelium discoideum cDNA clone:ddv23b07, 5' ... 490 0.0 3
(BJ358653) Dictyostelium discoideum cDNA clone:ddc10m18, 5' ... 505 0.0 3
(BJ363171) Dictyostelium discoideum cDNA clone:ddc25m07, 5' ... 505 0.0 3
(BJ417526) Dictyostelium discoideum cDNA clone:ddv30l19, 5' ... 505 0.0 3
(BJ415916) Dictyostelium discoideum cDNA clone:ddv24m02, 5' ... 505 0.0 3
(BJ376263) Dictyostelium discoideum cDNA clone:ddc21f21, 3' ... 781 0.0 1
(BJ374439) Dictyostelium discoideum cDNA clone:ddc7f21, 3' e... 779 0.0 1
(BJ343290) Dictyostelium discoideum cDNA clone:dda22i17, 3' ... 779 0.0 1
(BJ360172) Dictyostelium discoideum cDNA clone:ddc4a24, 5' e... 498 0.0 3
(BJ362227) Dictyostelium discoideum cDNA clone:ddc20k19, 5' ... 498 0.0 3
(BJ372046) Dictyostelium discoideum cDNA clone:ddc11e06, 3' ... 775 0.0 1
(BJ399918) Dictyostelium discoideum cDNA clone:dds8e03, 3' e... 771 0.0 1
(BJ433886) Dictyostelium discoideum cDNA clone:ddv23b07, 3' ... 767 0.0 1
(BJ431011) Dictyostelium discoideum cDNA clone:ddv9g13, 3' e... 763 0.0 1
(BJ374741) Dictyostelium discoideum cDNA clone:ddc16h04, 3' ... 763 0.0 1
(BJ387242) Dictyostelium discoideum cDNA clone:dds1c01, 5' e... 505 0.0 3
(BJ363219) Dictyostelium discoideum cDNA clone:ddc25i17, 5' ... 505 0.0 3
(BJ414865) Dictyostelium discoideum cDNA clone:ddv20n13, 5' ... 505 0.0 3
(BJ363718) Dictyostelium discoideum cDNA clone:ddc28j01, 5' ... 494 0.0 3
(BJ362028) Dictyostelium discoideum cDNA clone:ddc19f22, 5' ... 505 0.0 3
(BJ388559) Dictyostelium discoideum cDNA clone:dds6m04, 5' e... 505 0.0 3
(BJ375949) Dictyostelium discoideum cDNA clone:ddc20j16, 3' ... 710 0.0 1
(BJ362448) Dictyostelium discoideum cDNA clone:ddc21f21, 5' ... 505 0.0 3
(BJ389034) Dictyostelium discoideum cDNA clone:dds17p03, 5' ... 498 0.0 3
(BJ388011) Dictyostelium discoideum cDNA clone:dds7l08, 5' e... 505 0.0 3
(BJ361536) Dictyostelium discoideum cDNA clone:ddc17i13, 5' ... 505 0.0 3
(BJ390883) Dictyostelium discoideum cDNA clone:dds14h02, 5' ... 505 0.0 3
(BJ328489) Dictyostelium discoideum cDNA clone:dda28k07, 5' ... 505 0.0 3
(BJ412707) Dictyostelium discoideum cDNA clone:ddv9g13, 5' e... 505 0.0 3
(BJ417501) Dictyostelium discoideum cDNA clone:ddv30g20, 5' ... 505 0.0 3
(BJ361707) Dictyostelium discoideum cDNA clone:ddc18l07, 5' ... 505 0.0 3
(BJ409819) Dictyostelium discoideum cDNA clone:ddv10k03, 5' ... 505 0.0 3
(BJ390594) Dictyostelium discoideum cDNA clone:dds23b05, 5' ... 505 0.0 4
(BJ375143) Dictyostelium discoideum cDNA clone:ddc17i13, 3' ... 462 e-173 2
(BJ362177) Dictyostelium discoideum cDNA clone:ddc20j16, 5' ... 505 e-170 2
(BJ387861) Dictyostelium discoideum cDNA clone:dds5b13, 5' e... 505 e-170 2
(BJ324349) Dictyostelium discoideum cDNA clone:dda5k21, 5' e... 505 e-168 2
(BJ401362) Dictyostelium discoideum cDNA clone:dds23b05, 3' ... 573 e-159 1
(BJ389035) Dictyostelium discoideum cDNA clone:dds17p04, 5' ... 319 e-146 2
(BJ345657) Dictyostelium discoideum cDNA clone:dda28k07, 3' ... 529 e-146 1
(BJ427939) Dictyostelium discoideum cDNA clone:ddv10k03, 3' ... 474 e-129 1
(BJ359373) Dictyostelium discoideum cDNA clone:ddc14j05, 5' ... 299 e-106 2
(BJ432186) Dictyostelium discoideum cDNA clone:ddv17o22, 3' ... 375 3e-99 1
(BJ359364) Dictyostelium discoideum cDNA clone:ddc14f05, 5' ... 270 2e-97 2
(BJ416110) Dictyostelium discoideum cDNA clone:ddv25a06, 5' ... 349 2e-91 1
(C90425) Dictyostelium discoideum slug cDNA, clone SSI421. 214 5e-88 4
(AU073810) Dictyostelium discoideum slug cDNA, clone SSI421. 256 2e-84 2
(BJ359379) Dictyostelium discoideum cDNA clone:ddc14m05, 5' ... 228 4e-55 1
(BJ345125) Dictyostelium discoideum cDNA clone:dda21o14, 3' ... 111 9e-47 2
(BJ387923) Dictyostelium discoideum cDNA clone:dds5k23, 5' e... 121 6e-42 2

>(AU261887) Dictyostelium discoideum vegetative cDNA clone:VSB202,
3' end single read.
Length = 630

Score = 952 bits (480), Expect(3) = 0.0
Identities = 480/480 (100%)
Strand = Plus / Plus


Query: 485 atgttagtcaaccacaagaagacattgtaaatagagaacatagtgtgccagataatgaaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 atgttagtcaaccacaagaagacattgtaaatagagaacatagtgtgccagataatgaaa 62


Query: 545 gaagtaaaacctctgttgttgcatcaattattgcagcaggttatagtgttggacaagacg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 gaagtaaaacctctgttgttgcatcaattattgcagcaggttatagtgttggacaagacg 122


Query: 605 ctgccattaaagcacgtcaagttgatgaagaacatatgatttcattaaaacttaaagttg 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 ctgccattaaagcacgtcaagttgatgaagaacatatgatttcattaaaacttaaagttg 182


Query: 665 gagctgaagctgtcaaagcaaaagcaaatgaaattgataataaccttcacatttctgaga 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 gagctgaagctgtcaaagcaaaagcaaatgaaattgataataaccttcacatttctgaga 242


Query: 725 gtgccgctgccattaagggtgcagttgtagagagagcaaatgcactcgatgaaagattcc 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gtgccgctgccattaagggtgcagttgtagagagagcaaatgcactcgatgaaagattcc 302


Query: 785 aaatctcaggtttctttaagagtgcaagtgatatgatctctcaacaagcttccaatttaa 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aaatctcaggtttctttaagagtgcaagtgatatgatctctcaacaagcttccaatttaa 362


Query: 845 tgaaagcagccgaagaaaatagtacagtttcaccaatcgtaaataaagtttcaagttttg 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tgaaagcagccgaagaaaatagtacagtttcaccaatcgtaaataaagtttcaagttttg 422


Query: 905 gtacttttattaaacaagaagttcaacaaattcaaactgaaacctctcaagcaattgatg 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gtacttttattaaacaagaagttcaacaaattcaaactgaaacctctcaagcaattgatg 482

Score = 95.6 bits (48), Expect(3) = 0.0
Identities = 48/48 (100%)
Strand = Plus / Plus


Query: 1061 actcaaatatagatttttcaaaagaacaataagtttattatttttatg 1108
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 actcaaatatagatttttcaaaagaacaataagtttattatttttatg 626

Score = 58.0 bits (29), Expect(3) = 0.0
Identities = 29/29 (100%)
Strand = Plus / Plus


Query: 982 ggtattaactcttcaaatgatactgaatt 1010
|||||||||||||||||||||||||||||
Sbjct: 500 ggtattaactcttcaaatgatactgaatt 528

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,249,373,455
Number of extensions: 78901067
Number of successful extensions: 6869926
Number of sequences better than 10.0: 146
Length of query: 1266
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1242
Effective length of database: 97,308,875,965
Effective search space: 120857623948530
Effective search space used: 120857623948530
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 8
Homology vs Protein
Query= Contig-U13881-1 (Contig-U13881-1Q) /CSM_Contig/Contig-U13881-1Q.Seq.d
(1266 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC090882_24(AC090882|pid:none) Oryza sativa chromosome 3 BAC OSJ... 71 9e-11
BT068289_1(BT068289|pid:none) Zea mays full-length cDNA clone ZM... 67 1e-09
AK061483_1(AK061483|pid:none) Oryza sativa Japonica Group cDNA c... 67 1e-09
AY087960_1(AY087960|pid:none) Arabidopsis thaliana clone 39922 m... 67 1e-09
AP008212_69(AP008212|pid:none) Oryza sativa (japonica cultivar-g... 67 1e-09
BT061154_1(BT061154|pid:none) Zea mays full-length cDNA clone ZM... 67 1e-09
AC183492_7(AC183492|pid:none) Brassica oleracea Contig G, comple... 66 3e-09
BT062058_1(BT062058|pid:none) Zea mays full-length cDNA clone ZM... 65 4e-09
BT010766_1(BT010766|pid:none) Arabidopsis thaliana At5g46870 gen... 65 4e-09
EU962087_1(EU962087|pid:none) Zea mays clone 240116 RNA recognit... 65 4e-09
CR855144_15(CR855144|pid:none) Oryza sativa (indica cultivar-gro... 65 4e-09
AC150647_11(AC150647|pid:none) Medicago truncatula clone mth2-65... 65 7e-09
AC091811_13(AC091811|pid:none) Oryza sativa chromosome 3 BAC OSJ... 64 1e-08
EU958085_1(EU958085|pid:none) Zea mays clone 1672545 RNA-binding... 63 2e-08
BT087321_1(BT087321|pid:none) Zea mays full-length cDNA clone ZM... 60 2e-07
AK117709_1(AK117709|pid:none) Arabidopsis thaliana At5g32450 mRN... 60 2e-07
BT087683_1(BT087683|pid:none) Zea mays full-length cDNA clone ZM... 59 3e-07
EU964683_1(EU964683|pid:none) Zea mays clone 280814 nucleic acid... 59 5e-07
AM458618_1(AM458618|pid:none) Vitis vinifera contig VV78X062814.... 58 6e-07
AM920437_2007(AM920437|pid:none) Penicillium chrysogenum Wiscons... 58 6e-07
AM477014_3(AM477014|pid:none) Vitis vinifera contig VV78X023314.... 54 2e-05
AC148816_30(AC148816|pid:none) Medicago truncatula chromosome 7 ... 54 2e-05
BT065499_1(BT065499|pid:none) Zea mays full-length cDNA clone ZM... 52 5e-05
AY058146_1(AY058146|pid:none) Arabidopsis thaliana AT5g16840/F5E... 52 6e-05
AY087397_1(AY087397|pid:none) Arabidopsis thaliana clone 34944 m... 52 6e-05
AL391147_18(AL391147|pid:none) Arabidopsis thaliana DNA chromoso... 52 6e-05
BT052108_1(BT052108|pid:none) Medicago truncatula clone MTYF9_FA... 51 8e-05
EF677489_1(EF677489|pid:none) Picea sitchensis clone WS02769_M01... 50 1e-04
AP007171_537(AP007171|pid:none) Aspergillus oryzae RIB40 genomic... 50 2e-04
AM270370_6(AM270370|pid:none) Aspergillus niger contig An16c0180... 47 0.001
EF086656_1(EF086656|pid:none) Picea sitchensis clone WS02730_G11... 47 0.002
AL442112_3(AL442112|pid:none) Oryza sativa genomic DNA, chromoso... 45 0.004
AK109401_1(AK109401|pid:none) Oryza sativa Japonica Group cDNA c... 45 0.004
AC012563_20(AC012563|pid:none) Arabidopsis thaliana chromosome 1... 45 0.006
CR954203_362(CR954203|pid:none) Ostreococcus tauri strain OTTH05... 44 0.009
AC135288_9(AC135288|pid:none) Solanum demissum chromosome 5 BAC ... 42 0.047
AC183498_42(AC183498|pid:none) Brassica oleracea, *** SEQUENCING... 41 0.10
AY088782_1(AY088782|pid:none) Arabidopsis thaliana clone 9495 mR... 39 0.30
AC012188_11(AC012188|pid:none) Sequence of BAC F14L17 from Arabi... 39 0.30
AY050919_1(AY050919|pid:none) Arabidopsis thaliana unknown prote... 39 0.30
CP000148_1622(CP000148|pid:none) Geobacter metallireducens GS-15... 39 0.40
CP000250_2951(CP000250|pid:none) Rhodopseudomonas palustris HaA2... 38 0.68
AC142505_1(AC142505|pid:none) Solanum demissum chromosome 5 clon... 37 1.2
AE017198_970(AE017198|pid:none) Lactobacillus johnsonii NCC 533,... 37 1.2
CR954213_251(CR954213|pid:none) Ostreococcus tauri strain OTTH05... 37 1.5
CP001130_29(CP001130|pid:none) Hydrogenobaculum sp. Y04AAS1, com... 37 2.0
AC139840_5(AC139840|pid:none) Solanum demissum chromosome 5 clon... 37 2.0
CP000527_1667(CP000527|pid:none) Desulfovibrio vulgaris subsp. v... 36 3.4
AK118577_1(AK118577|pid:none) Arabidopsis thaliana At3g01210 mRN... 36 3.4
CP000633_3168(CP000633|pid:none) Agrobacterium vitis S4 chromoso... 36 3.4
EU962917_1(EU962917|pid:none) Zea mays clone 246535 CID11 mRNA, ... 36 3.4
AE017285_1394(AE017285|pid:none) Desulfovibrio vulgaris subsp. v... 36 3.4
BT033799_1(BT033799|pid:none) Zea mays full-length cDNA clone ZM... 35 4.4
EU968066_1(EU968066|pid:none) Zea mays clone 313728 unknown mRNA. 35 4.4
AE005673_2893(AE005673|pid:none) Caulobacter crescentus CB15, co... 35 5.7
FM864216_226(FM864216|pid:none) Mycoplasma conjunctivae HRC/581T... 35 5.7
CP000962_2877(CP000962|pid:none) Clostridium botulinum A3 str. L... 35 5.7
(A3DF29) RecName: Full=GTP-binding protein lepA; &CP000568_1316... 35 5.7
AJ864946_1(AJ864946|pid:none) Plasmodium vivax partial msp3a gen... 35 7.5
AP008971_784(AP008971|pid:none) Finegoldia magna ATCC 29328 DNA,... 35 7.5
CP001083_3024(CP001083|pid:none) Clostridium botulinum Ba4 str. ... 35 7.5
EU430586_1(EU430586|pid:none) Plasmodium vivax merozoite surface... 35 7.5
AK175783_1(AK175783|pid:none) Arabidopsis thaliana mRNA for puta... 35 7.5
AC018748_1(AC018748|pid:none) Sequence of BAC T3F20 from Arabido... 35 7.5
AJ864944_1(AJ864944|pid:none) Plasmodium vivax partial msp3a gen... 35 7.5
BA000012_629(BA000012|pid:none) Mesorhizobium loti MAFF303099 DN... 35 7.5
BT084791_1(BT084791|pid:none) Zea mays full-length cDNA clone ZM... 35 7.5
CP000494_6325(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl... 34 9.8
BT034042_1(BT034042|pid:none) Zea mays full-length cDNA clone ZM... 34 9.8
AY223431_1(AY223431|pid:none) Schistosoma japonicum clone ZZZ405... 34 9.8
FN357339_19(FN357339|pid:none) Schistosoma mansoni genome sequen... 34 9.8
AP004809_32(AP004809|pid:none) Oryza sativa Japonica Group genom... 34 9.8
CP000879_481(CP000879|pid:none) Petrotoga mobilis SJ95, complete... 34 9.8
(Q5AI15) RecName: Full=Polyadenylate-binding protein, cytoplasmi... 34 9.8

>AC090882_24(AC090882|pid:none) Oryza sativa chromosome 3 BAC
OSJNBa0014G15 genomic sequence, complete sequence.
&AP008209_2431(AP008209|pid:none)
Length = 284

Score = 70.9 bits (172), Expect = 9e-11
Identities = 66/270 (24%), Positives = 111/270 (41%)
Frame = +1

Query: 172 TVYVSNISLKANTKTVSDFFSFCGRIVNLFLRNDPTGSSQQAIVVFESDSXXXXXXXXXX 351
TV VSNISL A+ + +++FFSF G I + ++++ + SQ A V F+
Sbjct: 5 TVKVSNISLNASKREITEFFSFSGDIEYVEMQSE-SERSQLAYVTFKDSQGADTAVLLSG 63

Query: 352 XXIVDKVIQVVQFTPELEFDLTXXXXXXXXXNNLSGEXXXXXXXXXXXXXEDIVNREHSV 531
IVD+ + + TP + + L +GE + S
Sbjct: 64 ATIVDRSVII---TPVVNYQL-----PPDARKQSAGE------------------KSSSA 97

Query: 532 PDNERSKTSVVASIIAAGYSVGQDAAIKARQVDEEHMISLKLKVGAEAVKAKANEIDNNL 711
R VV+S++A G+ + +DA AR DE H I A +D
Sbjct: 98 ESVVRKAEDVVSSMLAKGFVLSKDALNVARSFDERHNI-------LSNATATVASLDRQY 150

Query: 712 HISESAAAIKGAVVERANALDERFQISGFFKSASDMISQQASNLMKAAEENSTVSPIVNK 891
+SE + + V + +D+R+Q+S KSA Q+AS A N VS +
Sbjct: 151 GVSEKISLGRAIVGSKVKEVDDRYQVSELTKSALAAAEQKASIASSAIMNNQYVSAGASW 210

Query: 892 VSSFGTFIKQEVQQIQTETSQAIDEKNKEK 981
++S + + + + T +D +E+
Sbjct: 211 LTSAFGMVTKAAGDMSSMTKDKVDRAEEER 240

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,161,894,705
Number of extensions: 16291545
Number of successful extensions: 79638
Number of sequences better than 10.0: 74
Number of HSP's gapped: 79579
Number of HSP's successfully gapped: 81
Length of query: 422
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 291
Effective length of database: 627,191,635
Effective search space: 182512765785
Effective search space used: 182512765785
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.84 gvh: 0.45 alm: 0.33 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.08
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
28.0 %: nuclear
12.0 %: cytoskeletal
8.0 %: mitochondrial
8.0 %: peroxisomal

>> prediction for Contig-U13881-1 is cyt

VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 15
AH (FL, L) 0
AF (FL, S) 4
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 1
SF (FL, S) 13
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0