NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U13860-1
Contig ID Contig-U13860-1
Contig update 2002.12.18
Contig sequence 
>Contig-U13860-1 (Contig-U13860-1Q) /CSM_Contig/Contig-U13860-1Q.Seq.d
AATTTTTTTTTGTGCTCACAAAATTTTATATGCAACAAAACTCCCTTTAA
TATTTAACTTTTTTTTTTTATTATTATCTTTTTTATAATAATAAAAATAA
NGACGAGGTCTCCTCCAAATAATAACAATAATAAAAGCAGTAGTAATAAT
AATAATAATAGTAGGGATAGTATTGATAATAATACAGATTCTAATAATTC
CGATAGTAGTAGGGGTAGTAGGAATGCTACCAACAATAATAATAACAACA
CCATCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
ATCAATTTAAGAAGCAGCAGTAATGGTGTAATTGGTAATAACCTAAATAA
TATTCCAGGTATAGAATTTATATGTCCATATTGTAATAGTGCTTACTCAT
CTAAGAATTTAGTAAACAACGAAAATAATGGCTTAAATAAATGTCCACAT
CTCCTTTTATCTTACTCAACTTTATCCCACCAAGGTGCAACCTACAGAAG
TGCATCAGACTTAACTGGTAATTTATTGGGTAATAAAATTCCATTGGTTA
TTTGTAAAAGATTTATAAAGTTTATTCGTGATACCAAAACCGGTACACCA
AATGGTTTTTATACCATACATCAAAGTAAAGCAAGAGTTACCAACTCGTT
TCAAGGTATTACCTCATTCTCTTTAAGATATACAATCAAAGGTGATCTAA
CAAGCAGTGATGCAAATAAAAAAACAACTACAACTATCGAATCAAACTAT
TTCCTTACTCAAGATCCAATTCAAGATTCTACTTTATTTGAACCTTTTGT
ATTAAAGAATTATATCGATTCAATTCCATCATTATCAACTAAATTAACTT
CAAATGGTGATTGTTTAAATAATGGTAATAGTAATAATAATAACAACAAC
AATAGTAAGGATACATCATTTATAGGTTTTTCAAGAGAACAAATTAAAAC
ATTTTTAGAATTTGATGATCAAGATGCAAATTTTTTATCTCAAGATTATT
TTTATAGTAACTGTAATAATAATAATAATAATGTAAATGATGGTGATGAT
TTGGTTAACAACTGTAAAAACCTTTTAAACAATAGATGGTTAGTGATCAC
TGGTTTACCAAACCAATTACCTGCTTTTGTAATGTTAACATCCCAACTCA
TTATGAATAGAAGTGAATTACATTTCCCTGTATCAATCAACAACTATCAA
AAGAATGAGATAGATGTAAATGTTTATGGAATTTATCCATTACCAAATAT
TGCAATTCAATCATAAAATCAATCAAATATAATCAATTAAATTAACAAAC
AACAAAGTTTATCAATACATCAATTATTTTTTTTTTATACTTTGATTTAT
TTTTAAATATCTTCTTTTTTTTTTATATAAATATCAATAAATTCAAATAA
AAAATAAAATTAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAA
Gap no gap
Contig length 1472
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 17
Number of EST 23
Link to clone list U13860
List of clone(s) 

est1=AFJ186F,1,142
est2=AFJ378F,1,164
est3=SFD438F,1,161
est4=SFJ556F,1,380
est5=CHB781F,18,300
est6=AFK240F,28,547
est7=SFD356F,29,160
est8=VFL634E,254,1407
est9=AFK240Z,716,1274
est10=CFH668Z,755,1395
est11=SFD356Z,765,1391
est12=SFD438Z,766,1375
est13=SFJ556Z,768,1384
est14=CFA619Z,784,1367
est15=CHC729Z,785,1252
est16=AFJ378Z,787,1274
est17=SFI326Z,788,1397
est18=AFB314Z,798,1393
est19=SSG811E,829,1413
est20=VFE155Z,846,1407
est21=VSE846E,1006,1413
est22=AFJ186Z,1038,1239
est23=SSG155F,1089,1473
Translated Amino Acid sequence 
nfflcsqnficnktpfni*LFFFIIIFFIIIKIXTRSPPNNNNNKSSSNNNNNSRDSIDN
NTDSNNSDSSRGSRNATNNNNNNTINNNNNNNNNNNNNNNINLRSSSNGVIGNNLNNIPG
IEFICPYCNSAYSSKNLVNNENNGLNKCPHLLLSYSTLSHQGATYRSASDLTGNLLGNKI
PLVICKRFIKFIRDTKTGTPNGFYTIHQSKARVTNSFQGITSFSLRYTIKGDLTSSDANK
KTTTTIESNYFLTQDPIQDSTLFEPFVLKNYIDSIPSLSTKLTSNGDCLNNGNSNNNNNN
NSKDTSFIGFSREQIKTFLEFDDQDANFLSQDYFYSNCNNNNNNVNDGDDLVNNCKNLLN
NRWLVITGLPNQLPAFVMLTSQLIMNRSELHFPVSINNYQKNEIDVNVYGIYPLPNIAIQ
S*nqsniin*inkqqslsihqlfffytliyf*issfffi*isinsnkk*n*n*kkkkkkk
kkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
nfflcsqnficnktpfni*LFFFIIIFFIIIKIXTRSPPNNNNNKSSSNNNNNSRDSIDN
NTDSNNSDSSRGSRNATNNNNNNTINNNNNNNNNNNNNNNINLRSSSNGVIGNNLNNIPG
IEFICPYCNSAYSSKNLVNNENNGLNKCPHLLLSYSTLSHQGATYRSASDLTGNLLGNKI
PLVICKRFIKFIRDTKTGTPNGFYTIHQSKARVTNSFQGITSFSLRYTIKGDLTSSDANK
KTTTTIESNYFLTQDPIQDSTLFEPFVLKNYIDSIPSLSTKLTSNGDCLNNGNSNNNNNN
NSKDTSFIGFSREQIKTFLEFDDQDANFLSQDYFYSNCNNNNNNVNDGDDLVNNCKNLLN
NRWLVITGLPNQLPAFVMLTSQLIMNRSELHFPVSINNYQKNEIDVNVYGIYPLPNIAIQ
S*nqsniin*inkqqslsihqlfffytliyf*issfffi*isinsnkk*n*n*kkkkkkk
kkkkkkkkkk


Frame B:
iffcahkilyatklplifnffflllsfl***k*xrgllqiitiikavviiiiivgivlii
iqiliipivvgvvgmlptiiittpstttttttttttttttsi*eaavmv*lvit*iifqv
*nlyvhivivlthlri**ttkima*invhisfyltqlyptkvqptevhqt*lviywvikf
hwlfvkdl*slfvipkpvhqmvfipyikvkqelptrfkvlphsl*diqskvi*qavmqik
kqlqlsnqtisllkiqfkillylnlly*riisiqfhhyqln*lqmviv*imviviiittt
ivrihhl*vfqenklkhf*nlmikmqifylkiifivtviiiiim*mmvmiwlttvktf*t
idg**slvyqtnylll*c*hpnsl*ievnyislyqsttikrmr*m*mfmefihyqilqfn
hkinqi*sikltnnkvyqyinyfffil*fifkyllfflykyq*iqiknkikikkkkkkkk
kkkkkkkkkk


Frame C:
fffvltkfymqqnsl*yltfffyyylfynnknxdevssk**q**kq********g*y***
yrf**fr***g**ecyqq***qhhqqqqqqqqqqqqqqqhqfkkqq*wcnw**pk*ysry
riymsil**clli*efskqrk*wlk*mstspfillnfipprcnlqkcirlnw*fig**ns
igyl*kiykvys*yqnrytkwflyhtsk*sksyqlvsryylilfkiynqr*snkq*ck*k
nnynyriklfpysrsnsrfyfi*tfcikelyrfnsiiin*infkw*lfk*w******qqq
**gyiiyrffkrtn*nifri**srckffisrlfl**l******ck*w**fg*ql*kpfkq
*mvsdhwftkpitcfcnvnipthye*k*itfpcinqqlske*drckclwnlsitkycnsi
iksikynqln*qttkfintsiifflyfdlflniffffyininkfk*kiklklkkkkkkkk
kkkkkkkkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U13860-1 (Contig-U13860-1Q)
/CSM_Contig/Contig-U13860-1Q.Seq.d
         (1472 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13860-1 (Contig-U13860-1Q) /CSM_Contig/Conti...  1370  0.0
Contig-U14894-1 (Contig-U14894-1Q) /CSM_Contig/Conti...   109  9e-24
Contig-U14704-1 (Contig-U14704-1Q) /CSM_Contig/Conti...    52  2e-06
Contig-U14434-1 (Contig-U14434-1Q) /CSM_Contig/Conti...    52  2e-06
Contig-U07546-1 (Contig-U07546-1Q) /CSM_Contig/Conti...    52  2e-06
Contig-U07040-1 (Contig-U07040-1Q) /CSM_Contig/Conti...    52  2e-06
Contig-U04722-1 (Contig-U04722-1Q) /CSM_Contig/Conti...    52  2e-06
Contig-U13988-1 (Contig-U13988-1Q) /CSM_Contig/Conti...    50  7e-06
Contig-U12210-1 (Contig-U12210-1Q) /CSM_Contig/Conti...    50  7e-06
Contig-U11342-1 (Contig-U11342-1Q) /CSM_Contig/Conti...    50  7e-06

>Contig-U13860-1 (Contig-U13860-1Q) /CSM_Contig/Contig-U13860-1Q.Seq.d
          Length = 1472

 Score = 1370 bits (691), Expect = 0.0
 Identities = 705/712 (99%)
 Strand = Plus / Plus

                                                                        
Query: 302  tcaatttaagaagcagcagtaatggtgtaattggtaataacctaaataatattccaggta 361
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302  tcaatttaagaagcagcagtaatggtgtaattggtaataacctaaataatattccaggta 361

                                                                        
Query: 362  tagaatttatatgtccatattgtaatagtgcttactcatctaagaatttagtaaacaacg 421
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362  tagaatttatatgtccatattgtaatagtgcttactcatctaagaatttagtaaacaacg 421

                                                                        
Query: 422  aaaataatggcttaaataaatgtccacatctccttttatcttactcaactttatcccacc 481
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422  aaaataatggcttaaataaatgtccacatctccttttatcttactcaactttatcccacc 481

                                                                        
Query: 482  aaggtgcaacctacagaagtgcatcagacttaactggtaatttattgggtaataaaattc 541
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482  aaggtgcaacctacagaagtgcatcagacttaactggtaatttattgggtaataaaattc 541

                                                                        
Query: 542  cattggttatttgtaaaagatttataaagtttattcgtgataccaaaaccggtacaccaa 601
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542  cattggttatttgtaaaagatttataaagtttattcgtgataccaaaaccggtacaccaa 601

                                                                        
Query: 602  atggtttttataccatacatcaaagtaaagcaagagttaccaactcgtttcaaggtatta 661
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602  atggtttttataccatacatcaaagtaaagcaagagttaccaactcgtttcaaggtatta 661

                                                                        
Query: 662  cctcattctctttaagatatacaatcaaaggtgatctaacaagcagtgatgcaaatnnnn 721
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 662  cctcattctctttaagatatacaatcaaaggtgatctaacaagcagtgatgcaaataaaa 721

                                                                        
Query: 722  nnncaactacaactatcgaatcaaactatttccttactcaagatccaattcaagattcta 781
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722  aaacaactacaactatcgaatcaaactatttccttactcaagatccaattcaagattcta 781

                                                                        
Query: 782  ctttatttgaaccttttgtattaaagaattatatcgattcaattccatcattatcaacta 841
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782  ctttatttgaaccttttgtattaaagaattatatcgattcaattccatcattatcaacta 841

                                                                        
Query: 842  aattaacttcaaatggtgattgtttaaataatggtaatagtaataataataacaacaaca 901
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842  aattaacttcaaatggtgattgtttaaataatggtaatagtaataataataacaacaaca 901

                                                                        
Query: 902  atagtaaggatacatcatttataggtttttcaagagaacaaattaaaacatttttagaat 961
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902  atagtaaggatacatcatttataggtttttcaagagaacaaattaaaacatttttagaat 961

                                                                
Query: 962  ttgatgatcaagatgcaaattttttatctcaagattatttttatagtaactg 1013
            ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 962  ttgatgatcaagatgcaaattttttatctcaagattatttttatagtaactg 1013


 Score =  583 bits (294), Expect = e-166
 Identities = 294/294 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1033 gtaaatgatggtgatgatttggttaacaactgtaaaaaccttttaaacaatagatggtta 1092
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1033 gtaaatgatggtgatgatttggttaacaactgtaaaaaccttttaaacaatagatggtta 1092

                                                                        
Query: 1093 gtgatcactggtttaccaaaccaattacctgcttttgtaatgttaacatcccaactcatt 1152
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1093 gtgatcactggtttaccaaaccaattacctgcttttgtaatgttaacatcccaactcatt 1152

                                                                        
Query: 1153 atgaatagaagtgaattacatttccctgtatcaatcaacaactatcaaaagaatgagata 1212
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1153 atgaatagaagtgaattacatttccctgtatcaatcaacaactatcaaaagaatgagata 1212

                                                                        
Query: 1213 gatgtaaatgtttatggaatttatccattaccaaatattgcaattcaatcataaaatcaa 1272
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1213 gatgtaaatgtttatggaatttatccattaccaaatattgcaattcaatcataaaatcaa 1272

                                                                  
Query: 1273 tcaaatataatcaattaaattaacaaacaacaaagtttatcaatacatcaatta 1326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1273 tcaaatataatcaattaaattaacaaacaacaaagtttatcaatacatcaatta 1326


 Score =  135 bits (68), Expect = 2e-31
 Identities = 93/104 (89%)
 Strand = Plus / Plus

                                                                       
Query: 12  gtgctcacaaaattttatatgcaacaaaactccctttaatatttaacnnnnnnnnnnnat 71
           |||||||||||||||||||||||||||||||||||||||||||||||           ||
Sbjct: 12  gtgctcacaaaattttatatgcaacaaaactccctttaatatttaactttttttttttat 71

                                                       
Query: 72  tattatcttttttataataataaaaataangacgaggtctcctc 115
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72  tattatcttttttataataataaaaataangacgaggtctcctc 115


 Score =  117 bits (59), Expect = 4e-26
 Identities = 59/59 (100%)
 Strand = Plus / Plus

                                                                      
Query: 185 cagattctaataattccgatagtagtaggggtagtaggaatgctaccaacaataataat 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 cagattctaataattccgatagtagtaggggtagtaggaatgctaccaacaataataat 243


 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 1375 atataaatatcaataaattcaaat 1398
            ||||||||||||||||||||||||
Sbjct: 1375 atataaatatcaataaattcaaat 1398


 Score = 32.2 bits (16), Expect = 1.6
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 883 aataataataacaaca 898
           ||||||||||||||||
Sbjct: 235 aataataataacaaca 250


 Score = 30.2 bits (15), Expect = 6.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 879 tagtaataataataa 893
           |||||||||||||||
Sbjct: 141 tagtaataataataa 155


 Score = 30.2 bits (15), Expect = 6.4
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                               
Query: 875  gtaatagtaataataataa 893
            |||||| ||||||||||||
Sbjct: 1013 gtaataataataataataa 1031


>Contig-U14894-1 (Contig-U14894-1Q) /CSM_Contig/Contig-U14894-1Q.Seq.d
          Length = 661

 Score =  109 bits (55), Expect = 9e-24
 Identities = 58/59 (98%)
 Strand = Plus / Plus

                                                                      
Query: 185 cagattctaataattccgatagtagtaggggtagtaggaatgctaccaacaataataat 243
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 154 cagattctaataattccgatagtagtagtggtagtaggaatgctaccaacaataataat 212


 Score = 87.7 bits (44), Expect = 3e-17
 Identities = 71/84 (84%)
 Strand = Plus / Plus

                                                                       
Query: 32  gcaacaaaactccctttaatatttaacnnnnnnnnnnnattattatcttttttataataa 91
           |||||||||||||||||||||||||||           ||||||||||||||||||||||
Sbjct: 1   gcaacaaaactccctttaatatttaactttttttttttattattatcttttttataataa 60

                                   
Query: 92  taaaaataangacgaggtctcctc 115
           ||||||||| ||||| ||||||||
Sbjct: 61  taaaaataatgacgatgtctcctc 84


 Score = 32.2 bits (16), Expect = 1.6
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 883 aataataataacaaca 898
           ||||||||||||||||
Sbjct: 204 aataataataacaaca 219


 Score = 30.2 bits (15), Expect = 6.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 879 tagtaataataataa 893
           |||||||||||||||
Sbjct: 110 tagtaataataataa 124


>Contig-U14704-1 (Contig-U14704-1Q) /CSM_Contig/Contig-U14704-1Q.Seq.d
          Length = 997

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 868 aataatggtaatagtaataataataa 893
           ||||||||||||||||||||||||||
Sbjct: 849 aataatggtaatagtaataataataa 874


 Score = 32.2 bits (16), Expect = 1.6
 Identities = 22/24 (91%)
 Strand = Plus / Plus

                                   
Query: 870 taatggtaatagtaataataataa 893
           |||| |||||| ||||||||||||
Sbjct: 857 taatagtaataataataataataa 880


 Score = 30.2 bits (15), Expect = 6.4
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                              
Query: 876 taatagtaataataataac 894
           ||||| |||||||||||||
Sbjct: 160 taataataataataataac 178


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 42,287
Number of Sequences: 6905
Number of extensions: 42287
Number of successful extensions: 10549
Number of sequences better than 10.0: 1292
length of query: 1472
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1456
effective length of database: 5,564,391
effective search space: 8101753296
effective search space used: 8101753296
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.14
Homology vs DNA 
Query= Contig-U13860-1 (Contig-U13860-1Q) /CSM_Contig/Contig-U13860-1Q.Seq.d
         (1472 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ415945) Dictyostelium discoideum cDNA clone:ddv24c10, 5' ...   825   0.0    2
(BJ374866) Dictyostelium discoideum cDNA clone:ddc16g18, 3' ...   507   0.0    2
(BJ345057) Dictyostelium discoideum cDNA clone:dda21o10, 3' ...   537   0.0    2
(BJ399841) Dictyostelium discoideum cDNA clone:dds7p13, 3' e...   488   0.0    3
(BJ402167) Dictyostelium discoideum cDNA clone:dds20o13, 3' ...   476   0.0    2
(BJ399768) Dictyostelium discoideum cDNA clone:dds7l10, 3' e...   468   0.0    2
(BJ347166) Dictyostelium discoideum cDNA clone:dda26f09, 3' ...   446   0.0    3
(BJ344607) Dictyostelium discoideum cDNA clone:dda19l19, 3' ...   426   0.0    2
(BJ340647) Dictyostelium discoideum cDNA clone:dda3l03, 3' e...   406   0.0    3
(BJ402540) Dictyostelium discoideum cDNA clone:dds17d07, 3' ...   416   0.0    3
(BJ373373) Dictyostelium discoideum cDNA clone:ddc2e06, 3' e...   408   0.0    2
(BJ434567) Dictyostelium discoideum cDNA clone:ddv24c10, 3' ...   398   0.0    3
(BJ431039) Dictyostelium discoideum cDNA clone:ddv9m13, 3' e...   400   0.0    3
(BJ378123) Dictyostelium discoideum cDNA clone:ddc27j07, 3' ...   363   e-171  2
(BJ329789) Dictyostelium discoideum cDNA clone:dda26f09, 5' ...   498   e-157  3
(C89989) Dictyostelium discoideum slug cDNA, clone SSG811.        418   e-153  3
(BJ327706) Dictyostelium discoideum cDNA clone:dda21o10, 5' ...   422   e-126  3
(AU263423) Dictyostelium discoideum vegetative cDNA clone:VS...   418   e-118  3
(AU073367) Dictyostelium discoideum slug cDNA, clone SSG811.      367   e-112  2
(BJ427619) Dictyostelium discoideum cDNA clone:ddv63c04, 5' ...   353   e-106  4
(BJ446534) Dictyostelium discoideum cDNA clone:ddv63c04, 3' ...   371   e-104  4
(BJ344604) Dictyostelium discoideum cDNA clone:dda19k21, 3' ...   321   4e-83  1
(AU073107) Dictyostelium discoideum slug cDNA, clone SSG155.      307   6e-79  1
(BJ389962) Dictyostelium discoideum cDNA clone:dds20o13, 5' ...   131   2e-44  2
(BJ327287) Dictyostelium discoideum cDNA clone:dda19l19, 5' ...    88   4e-14  2
(BJ363244) Dictyostelium discoideum cDNA clone:ddc25b21, 5' ...    82   1e-12  2
(BJ327284) Dictyostelium discoideum cDNA clone:dda19k21, 5' ...    86   4e-12  1
(BJ388013) Dictyostelium discoideum cDNA clone:dds7l10, 5' e...    80   9e-12  2
(AC153921) Mus musculus 10 BAC RP23-89C21 (Roswell Park Canc...    68   1e-06  1
(AC101873) Mus musculus clone RP23-360O18, WORKING DRAFT SEQ...    68   1e-06  1
(AZ447836) 1M0245K11F Mouse 10kb plasmid UUGC1M library Mus ...    68   1e-06  1
(AZ382870) 1M0140N13F Mouse 10kb plasmid UUGC1M library Mus ...    68   1e-06  1
(CW139275) 104_529_11135150_148_34909_057 Sorghum methylatio...    66   4e-06  1
(EH011434) USDA-FP_184434 Lysiphlebus testaceipes adult whol...    64   2e-05  1
(AC180552) Strongylocentrotus purpuratus clone R3-3098C1, WO...    44   2e-04  2
(CV162186) CS_hyp_01d11_M13Reverse Blue crab hypodermis, nor...    42   2e-04  2
(ET898754) CHO_OF145xg03f1.ab1 CHO_OF Nicotiana tabacum geno...    50   2e-04  2
(CR925804) Zebrafish DNA sequence from clone CH211-151M7 in ...    60   3e-04  1
(CR762422) Zebrafish DNA sequence from clone CH211-184I23 in...    60   3e-04  1
(CR381591) Zebrafish DNA sequence from clone CH211-177N5 in ...    60   3e-04  1
(AL929493) Zebrafish DNA sequence from clone CH211-157D2.          60   3e-04  1
(AC098982) Rattus norvegicus  BAC CH230-46O20 (Children's Ho...    60   3e-04  1
(AC118808) Rattus norvegicus clone CH230-490G19, *** SEQUENC...    60   3e-04  1
(CU862014) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    60   3e-04  1
(CT476814) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    60   3e-04  1
(CR855129) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    60   3e-04  1
(AL844509) Plasmodium falciparum chromosome 13.                    60   3e-04  1
(CT588221) Danio rerio EST, clone ZF_mu_24l03 3'.                  60   3e-04  1
(CT588220) Danio rerio EST, clone ZF_mu_24l03 5'.                  60   3e-04  1
(AC126000) Rattus norvegicus clone CH230-34N21, *** SEQUENCI...    38   7e-04  2
(AE014833) Plasmodium falciparum 3D7 chromosome 10 section 5...    40   7e-04  2
(AL845481) Zebrafish DNA sequence from clone DKEY-46N18 in l...    54   7e-04  2
(AC106690) Rattus norvegicus clone CH230-93M17, WORKING DRAF...    38   7e-04  2
(CV303138) CS_hyp_27d12_M13Reverse Blue crab hypodermis, nor...    42   0.001  2
(CV463052) CS_hyp_52b08_M13Reverse Blue crab hypodermis, nor...    40   0.001  2
(CU468915) Zebrafish DNA sequence from clone CH211-202L22 in...    58   0.001  1
(CU372927) Zebrafish DNA sequence from clone DKEY-173P11 in ...    58   0.001  1
(CR847804) Zebrafish DNA sequence from clone DKEY-85C24 in l...    58   0.001  1
(CR751235) Zebrafish DNA sequence from clone CH211-240J22 in...    58   0.001  1
(CR678388) Zebrafish DNA sequence from clone CH211-125I3 in ...    58   0.001  1
(CR352255) Zebrafish DNA sequence from clone CH211-118E10 in...    58   0.001  1
(AM470696) Vitis vinifera contig VV78X256205.5, whole genome...    58   0.001  1
(AL929358) Plasmodium falciparum strain 3D7, chromosome 9; s...    58   0.001  1
(AJ279060) Dictyostelium discoideum gdt1 gene for hypothetic...    58   0.001  1
(AJ000992) Dictyostelium discoideum gdt1 gene.                     58   0.001  1
(AC116987) Dictyostelium discoideum chromosome 2 map 3527441...    58   0.001  1
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    58   0.001  1
(AC157972) Strongylocentrotus purpuratus clone R3-4002P16, W...    58   0.001  1
(AC128344) Rattus norvegicus clone CH230-105H4, WORKING DRAF...    58   0.001  1
(AC127397) Rattus norvegicus clone CH230-25M10, WORKING DRAF...    58   0.001  1
(AC115469) Rattus norvegicus clone CH230-247H17, *** SEQUENC...    58   0.001  1
(AC112526) Rattus norvegicus clone CH230-223F17, *** SEQUENC...    58   0.001  1
(AC110854) Rattus norvegicus clone CH230-108D22, WORKING DRA...    58   0.001  1
(AC105356) Rattus norvegicus clone CH230-139P10, *** SEQUENC...    58   0.001  1
(AC098909) Rattus norvegicus clone CH230-151K7, WORKING DRAF...    58   0.001  1
(AC095947) Rattus norvegicus clone CH230-11A9, *** SEQUENCIN...    58   0.001  1
(AC087800) Mus musculus strain C57BL/6J clone rp23-361k2, WO...    58   0.001  1
(CT573442) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    58   0.001  1
(AL109815) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    58   0.001  1
(AC181312) Strongylocentrotus purpuratus clone R3-4017I22, W...    58   0.001  1
(AC168390) Strongylocentrotus purpuratus clone R3-4002P16, W...    58   0.001  1
(AZ958907) 2M0226F19F Mouse 10kb plasmid UUGC2M library Mus ...    58   0.001  1
(AZ003763) RPCI-23-345A13.TJ RPCI-23 Mus musculus genomic cl...    58   0.001  1
(CR278061) Reverse strand read from insert in 5'HPRT inserti...    58   0.001  1
(CR264194) Reverse strand read from insert in 5'HPRT inserti...    58   0.001  1
(CR211163) Reverse strand read from insert in 5'HPRT inserti...    58   0.001  1
(CR198080) Reverse strand read from insert in 5'HPRT inserti...    58   0.001  1
(CR190484) Reverse strand read from insert in 5'HPRT inserti...    58   0.001  1
(AG709064) Macaca fuscata fuscata DNA, clone: MSB2-152J18_R,...    58   0.001  1
(AG611942) Mus musculus molossinus DNA, clone:MSMg01-547F05....    58   0.001  1
(AG524636) Mus musculus molossinus DNA, clone:MSMg01-432K19....    58   0.001  1
(CL182487) 104_394_10897482_148_31919_090 Sorghum methylatio...    58   0.001  1
(CL182486) 104_394_10897482_116_31920_090 Sorghum methylatio...    58   0.001  1
(CL147869) 104_327_10592691_148_31780_199 Sorghum methylatio...    58   0.001  1
(CL147868) 104_327_10592691_116_31781_199 Sorghum methylatio...    58   0.001  1
(BZ172667) CH230-464B3.TJ CHORI-230 Segment 2 Rattus norvegi...    58   0.001  1
(AG381691) Mus musculus molossinus DNA, clone:MSMg01-191M23....    58   0.001  1
(AG354864) Mus musculus molossinus DNA, clone:MSMg01-153D03....    58   0.001  1
(AG334870) Mus musculus molossinus DNA, clone:MSMg01-125O13....    58   0.001  1
(EL505445) G06_2272_1.AB1 Blood stage Plasmodium falciparum ...    58   0.001  1

>(BJ415945) Dictyostelium discoideum cDNA clone:ddv24c10, 5' end,
           single read.
          Length = 642

 Score =  825 bits (416), Expect(2) = 0.0
 Identities = 416/416 (100%)
 Strand = Plus / Plus


Query: 302 tcaatttaagaagcagcagtaatggtgtaattggtaataacctaaataatattccaggta 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49  tcaatttaagaagcagcagtaatggtgtaattggtaataacctaaataatattccaggta 108


Query: 362 tagaatttatatgtccatattgtaatagtgcttactcatctaagaatttagtaaacaacg 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 tagaatttatatgtccatattgtaatagtgcttactcatctaagaatttagtaaacaacg 168


Query: 422 aaaataatggcttaaataaatgtccacatctccttttatcttactcaactttatcccacc 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 aaaataatggcttaaataaatgtccacatctccttttatcttactcaactttatcccacc 228


Query: 482 aaggtgcaacctacagaagtgcatcagacttaactggtaatttattgggtaataaaattc 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 aaggtgcaacctacagaagtgcatcagacttaactggtaatttattgggtaataaaattc 288


Query: 542 cattggttatttgtaaaagatttataaagtttattcgtgataccaaaaccggtacaccaa 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 cattggttatttgtaaaagatttataaagtttattcgtgataccaaaaccggtacaccaa 348


Query: 602 atggtttttataccatacatcaaagtaaagcaagagttaccaactcgtttcaaggtatta 661
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 atggtttttataccatacatcaaagtaaagcaagagttaccaactcgtttcaaggtatta 408


Query: 662 cctcattctctttaagatatacaatcaaaggtgatctaacaagcagtgatgcaaat 717
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 cctcattctctttaagatatacaatcaaaggtgatctaacaagcagtgatgcaaat 464

 Score =  339 bits (171), Expect(2) = 0.0
 Identities = 171/171 (100%)
 Strand = Plus / Plus


Query: 725 caactacaactatcgaatcaaactatttccttactcaagatccaattcaagattctactt 784
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 caactacaactatcgaatcaaactatttccttactcaagatccaattcaagattctactt 531


Query: 785 tatttgaaccttttgtattaaagaattatatcgattcaattccatcattatcaactaaat 844
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tatttgaaccttttgtattaaagaattatatcgattcaattccatcattatcaactaaat 591


Query: 845 taacttcaaatggtgattgtttaaataatggtaatagtaataataataaca 895
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 taacttcaaatggtgattgtttaaataatggtaatagtaataataataaca 642

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,233,721,547
Number of extensions: 80070026
Number of successful extensions: 8645339
Number of sequences better than 10.0: 6369
Length of query: 1472
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1448
Effective length of database: 97,308,875,965
Effective search space: 140903252397320
Effective search space used: 140903252397320
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 8
Homology vs Protein 
Query= Contig-U13860-1 (Contig-U13860-1Q) /CSM_Contig/Contig-U13860-1Q.Seq.d
         (1472 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,455,223,978
Number of extensions: 24124865
Number of successful extensions: 46970
Number of sequences better than 10.0: 0
Number of HSP's gapped: 46961
Number of HSP's successfully gapped: 0
Length of query: 490
Length of database: 1,051,180,864
Length adjustment: 133
Effective length of query: 357
Effective length of database: 620,718,517
Effective search space: 221596510569
Effective search space used: 221596510569
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 1.04  gvh: 0.46  alm: 0.24  top: 0.67  tms: 0.07  mit: 0.39  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.04  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: Golgi
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U13860-1 is nuc
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 2
AH (FL, L) 0
AF (FL, S) 4
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 4
CH (FL, L) 2
CF (FL, S) 2
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0