Contig-U13854-1
Contig ID Contig-U13854-1
Contig update 2002.12.18
Contig sequence
>Contig-U13854-1 (Contig-U13854-1Q) /CSM_Contig/Contig-U13854-1Q.Seq.d
CAATTATTATTTATAACAAATAAATATTATTTTTTAATTTTATTATTCAT
ATTATATAATTTTGGATTGATTTCAAAACTTAATAAAATCTCATTGTACA
TTAAATTTTATAAAATAAAATAAAAAAAAAAAAAATTAAAAAATAAAAAA
TAAAAATGGAAGAAATTAATAAAAAAGATACATTCATTGAACCAATTCTC
AAAGAAAATAAAGATAGATTTGTATTATTTCCAATAAAATACCCAGATAT
CTGGAGAATGTATAAAAAAGCCCTTGCAAGTCATTGGGTAGCTGAAGAAA
TTGATCTTGGTAATGATAATGTTGATTGGGAATATAAATTAACAGATAAT
GAACGTCATTTCATCTCACATGTTTTGGCATTTTTTGCTGCATCTGATGG
TATTGTAAATGAAAACCTTGCAACTAGATTTATGTCTGAAGTACAAATTC
CAGAAGCAAGATGTTTCTATGGTTTTCAAATTGCAATTGAAAATATACAT
TCTGAAACTTATAGTCTTTTAATTGAAACTTATATTAAAGATAAGCAAAC
TAAAGATAAATTATTTAATGCAATTGAAACAATTCCATGTATTAAAAAGA
AGGCAGAATGGGCATTAAGATGGATAAATGATTCAGATTCATTTGCAGAA
CGTTTGGTTGCATTTGCAGCAGTTGAGGGTATATTTTTCAGTGGAAGTTT
TTGTTCAATATTTTGGTTGAAAAAGAGAGGTTTAATGCAAGGTTTAACAT
TTTCAAATGAATTAATTTCACGTGACGAAGGTTTACATTGTGATTTCGCA
TGTCTTCTCTACACAAAGTTACAAAGAAAGTTGGATCCAAAAGTCATTGA
GAAAATGATAAGAGATGCTGTCGAATGTGAAAAGGAATTCATTTGCGAAT
CATTACCAGTGGATTTAATTGGTATGAACTCGCGTTCAATGTCTCAATAC
ATTGAGTTTTGTGCTGATCGTTTAGTGGTTTCTTTAGGTTACAAAAAGAT
TTTCAACTCTTCAAATCCTTTCGAATGGATGGAAATGATTTCTTTACAAA
GAAAATCAAACTTTTTCGAAGGCAAAGTTGCAGAATACGCTAAAACTGGT
GTTGCAATTCAAGGAAATAATCAACAAAAAAATAATCAATCAAGAACTTT
AGTTTTAGATGAAGATTTTTAAAAAAAAACCTTTTATTTTTTTTTTTTCT
TTTTTCAGTAGTGTTTCATTTGATAGGATATTTAAAAATTGTGTTTTGAA
AAAAAAAAAAAAAATAAAAAAAAAATAAATAAAAAATAAAAAAAATTAAA
TAAATTAAAAAAAAAAAAA

Gap no gap
Contig length 1319
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 3656547
End point 3655228
Strand (PLUS/MINUS) MINUS
Number of clones 20
Number of EST 26
Link to clone list U13854
List of clone(s)

est1=AFJ604F,-4,131
est2=CFG415F,1,131
est3=CHD610F,3,131
est4=SFC565F,3,210
est5=SFI621F,3,131
est6=VFJ114F,3,131
est7=SFD164F,4,131
est8=SFE684F,27,131
est9=AFK403F,30,131
est10=AFI791Z,33,175
est11=CFB618F,58,579
est12=SSF884E,66,1319
est13=VSD706F,321,892
est14=VFJ114Z,544,1242
est15=SFL284Z,565,1220
est16=CFF307Z,807,1241
est17=CFG415Z,808,1220
est18=AFO847Z,810,1237
est19=SFI621Z,810,1237
est20=AFB154Z,875,1236
est21=CFK148Z,880,1135
est22=SFF228Z,906,1220
est23=VFE808Z,911,1246
est24=SFD164Z,1036,1236
est25=CFB618Z,1047,1220
est26=SFE684Z,1124,1240
Translated Amino Acid sequence
iiiynk*ilffnfiihii*fwidfkt**nlivh*il*nkikkkkikk*KIKMEEINKKDT
FIEPILKENKDRFVLFPIKYPDIWRMYKKALASHWVAEEIDLGNDNVDWEYKLTDNERHF
ISHVLAFFAASDGIVNENLATRFMSEVQIPEARCFYGFQIAIENIHSETYSLLIETYIKD
KQTKDKLFNAIETIPCIKKKAEWALRWINDSDSFAERLVAFAAVEGIFFSGSFCSIFWLK
KRGLMQGLTFSNELISRDEGLHCDFACLLYTKLQRKLDPKVIEKMIRDAVECEKEFICES
LPVDLIGMNSRSMSQYIEFCADRLVVSLGYKKIFNSSNPFEWMEMISLQRKSNFFEGKVA
EYAKTGVAIQGNNQQKNNQSRTLVLDEDF*kktfyffffffq*cfi**di*klcfekkkk
nkkkinkk*kklnklkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
qllfitnkyyflillfilynfglisklnkislyikfykik*kkkklknkk*kwkklikki
hslnqfskkikidlyyfq*ntqisgecikkplqvig*lkklilvmimlignin*qimnvi
sshmfwhfllhlmvl*mktlqldlclkykfqkqdvsmvfklqlkiyilklivf*lklilk
isklkinylmqlkqfhvlkrrqngh*dg*miqihlqnvwlhlqqlrvyfsvevfvqyfg*
krev*ckv*hfqmn*fhvtkvyivishvfstqsykeswiqkslrk**emlsnvkrnsfan
hyqwi*lv*trvqclntlsfvliv*wfl*vtkrfstlqilsngwk*flykenqtfskakl
qntlklvlqfkeiinkkiinqel*f*mkifkkkpfifffsffssvsfdrifkncvlkkkk
kikkk*iknkkn*in*kkk


Frame B:
nyyl*qiniif*fyysyyiild*fqnlikshctlnfik*nkkkkn*kiknkngrn**kry
ih*tnsqrk*r*iciisnkiprylenv*kspckslgs*rn*sw***c*lgi*inr**tsf
hltcfgifcci*wyck*kpcn*iyv*stnsrskmflwfsncn*kytf*nl*sfn*nly*r
*an*r*ii*cn*nnsmy*kegrmgikmdk*frficrtfgcicss*gyifqwkflfnilve
kerfnarfnifk*inft*rrftl*frmsslhkvtkkvgsksh*endkrccrm*kgihlri
itsgfnwyelafnvsih*vlc*sfsgffrlqkdfqlfksfrmdgndfftkkiklfrrqsc
rir*nwccnsrk*stkk*siknfsfr*rflkknllfffflfsvvfhligylkivf*kkkk
k*kknk*kikkik*ikkkk


Frame C:
iiiynk*ilffnfiihii*fwidfkt**nlivh*il*nkikkkkikk*KIKMEEINKKDT
FIEPILKENKDRFVLFPIKYPDIWRMYKKALASHWVAEEIDLGNDNVDWEYKLTDNERHF
ISHVLAFFAASDGIVNENLATRFMSEVQIPEARCFYGFQIAIENIHSETYSLLIETYIKD
KQTKDKLFNAIETIPCIKKKAEWALRWINDSDSFAERLVAFAAVEGIFFSGSFCSIFWLK
KRGLMQGLTFSNELISRDEGLHCDFACLLYTKLQRKLDPKVIEKMIRDAVECEKEFICES
LPVDLIGMNSRSMSQYIEFCADRLVVSLGYKKIFNSSNPFEWMEMISLQRKSNFFEGKVA
EYAKTGVAIQGNNQQKNNQSRTLVLDEDF*kktfyffffffq*cfi**di*klcfekkkk
nkkkinkk*kklnklkkkk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U13854-1 (Contig-U13854-1Q)
/CSM_Contig/Contig-U13854-1Q.Seq.d
(1319 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U13854-1 (Contig-U13854-1Q) /CSM_Contig/Conti... 1929 0.0
Contig-U03282-1 (Contig-U03282-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U08720-1 (Contig-U08720-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U14024-1 (Contig-U14024-1Q) /CSM_Contig/Conti... 36 0.093
Contig-U11994-1 (Contig-U11994-1Q) /CSM_Contig/Conti... 36 0.093
Contig-U11718-1 (Contig-U11718-1Q) /CSM_Contig/Conti... 36 0.093
Contig-U14626-1 (Contig-U14626-1Q) /CSM_Contig/Conti... 34 0.37
Contig-U14177-1 (Contig-U14177-1Q) /CSM_Contig/Conti... 34 0.37
Contig-U14165-1 (Contig-U14165-1Q) /CSM_Contig/Conti... 34 0.37
Contig-U13829-1 (Contig-U13829-1Q) /CSM_Contig/Conti... 34 0.37

>Contig-U13854-1 (Contig-U13854-1Q) /CSM_Contig/Contig-U13854-1Q.Seq.d
Length = 1319

Score = 1929 bits (973), Expect = 0.0
Identities = 987/994 (99%)
Strand = Plus / Plus


Query: 177 gatacattcattgaaccaattctcaaagaaaataaagatagatttgtattatttccaata 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 gatacattcattgaaccaattctcaaagaaaataaagatagatttgtattatttccaata 236


Query: 237 aaatacccagatatctggagaatgtataaaaaagcccttgcaagtcattgggtagctgaa 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 aaatacccagatatctggagaatgtataaaaaagcccttgcaagtcattgggtagctgaa 296


Query: 297 gaaattgatcttggtaatgataatgttgattgggaatataaattaacagataatgaacgt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gaaattgatcttggtaatgataatgttgattgggaatataaattaacagataatgaacgt 356


Query: 357 catttcatctcacatgttttggcattttttgctgcatctgatggtattgtaaatgaaaac 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 catttcatctcacatgttttggcattttttgctgcatctgatggtattgtaaatgaaaac 416


Query: 417 cttgcaactagatttatgtctgaagtacaaattccagaagcaagatgtttctatggtttt 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 cttgcaactagatttatgtctgaagtacaaattccagaagcaagatgtttctatggtttt 476


Query: 477 caaattgcaattgaaaatatacattctgaaacttatagtcttttaattgaaacttatatt 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 caaattgcaattgaaaatatacattctgaaacttatagtcttttaattgaaacttatatt 536


Query: 537 aaagataagcaaactaaagataaattatttaatgcaattgaaacaattccatgtattaaa 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 aaagataagcaaactaaagataaattatttaatgcaattgaaacaattccatgtattaaa 596


Query: 597 aagaaggcagaatgggcattaagatggataaatgattcagattcatttgcagaacgtttg 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 aagaaggcagaatgggcattaagatggataaatgattcagattcatttgcagaacgtttg 656


Query: 657 gttgcatttgcagcagttgagggtatatttttcagtggaagtttttgttcaatattttgg 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 gttgcatttgcagcagttgagggtatatttttcagtggaagtttttgttcaatattttgg 716


Query: 717 ttgaaaaagagaggtttaatgcaaggtttaacattttcaaatgaattaatttcacgtgac 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 ttgaaaaagagaggtttaatgcaaggtttaacattttcaaatgaattaatttcacgtgac 776


Query: 777 gaaggtttacattgtgatttcgcatgtcttctctacacaaagttacaaagaaagttggat 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 gaaggtttacattgtgatttcgcatgtcttctctacacaaagttacaaagaaagttggat 836


Query: 837 ccaaaagtcattgagaaaatgataagagatgctgtcgaatgtgaaaaggaattcatttgc 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 ccaaaagtcattgagaaaatgataagagatgctgtcgaatgtgaaaaggaattcatttgc 896


Query: 897 gaatcattaccagtggatttaattggtatgaactcgcgttcaatgtctcaatacattgag 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 gaatcattaccagtggatttaattggtatgaactcgcgttcaatgtctcaatacattgag 956


Query: 957 ttttgtgctgatcgtttagtggtttctttaggttacaaaaagattttcaactcttcaaat 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957 ttttgtgctgatcgtttagtggtttctttaggttacaaaaagattttcaactcttcaaat 1016


Query: 1017 cctttcgaatggatggaaatgatttctttacaaagaaaatcaaactttttcgaaggcaaa 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1017 cctttcgaatggatggaaatgatttctttacaaagaaaatcaaactttttcgaaggcaaa 1076


Query: 1077 gttgcagaatacgctaaaactggtgttgcaattcaaggaaataatcaacnnnnnnntaat 1136
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1077 gttgcagaatacgctaaaactggtgttgcaattcaaggaaataatcaacaaaaaaataat 1136


Query: 1137 caatcaagaactttagttttagatgaagattttt 1170
||||||||||||||||||||||||||||||||||
Sbjct: 1137 caatcaagaactttagttttagatgaagattttt 1170


Score = 93.7 bits (47), Expect = 5e-19
Identities = 47/47 (100%)
Strand = Plus / Plus


Query: 64 ggattgatttcaaaacttaataaaatctcattgtacattaaatttta 110
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 ggattgatttcaaaacttaataaaatctcattgtacattaaatttta 110


Score = 85.7 bits (43), Expect = 1e-16
Identities = 43/43 (100%)
Strand = Plus / Plus


Query: 1206 cagtagtgtttcatttgataggatatttaaaaattgtgttttg 1248
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1206 cagtagtgtttcatttgataggatatttaaaaattgtgttttg 1248


>Contig-U03282-1 (Contig-U03282-1Q) /CSM_Contig/Contig-U03282-1Q.Seq.d
Length = 750

Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus


Query: 536 taaagataagcaaactaaagataaat 561
|||||||||| |||||||||||||||
Sbjct: 295 taaagataagaaaactaaagataaat 320


>Contig-U08720-1 (Contig-U08720-1Q) /CSM_Contig/Contig-U08720-1Q.Seq.d
Length = 1183

Score = 40.1 bits (20), Expect = 0.006
Identities = 23/24 (95%)
Strand = Plus / Minus


Query: 295 aagaaattgatcttggtaatgata 318
||||||||||| ||||||||||||
Sbjct: 1011 aagaaattgatgttggtaatgata 988


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,852
Number of Sequences: 6905
Number of extensions: 15852
Number of successful extensions: 1673
Number of sequences better than 10.0: 176
length of query: 1319
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1303
effective length of database: 5,564,391
effective search space: 7250401473
effective search space used: 7250401473
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.14
Homology vs DNA
Query= Contig-U13854-1 (Contig-U13854-1Q) /CSM_Contig/Contig-U13854-1Q.Seq.d
(1319 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(L36941) Dictyostelium discoideum ribonucleotide reductase s... 1217 0.0 4
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 1217 0.0 4
(AU264434) Dictyostelium discoideum vegetative cDNA clone:VS... 1134 0.0 1
(BJ401610) Dictyostelium discoideum cDNA clone:dds23g22, 3' ... 1013 0.0 2
(C92707) Dictyostelium discoideum slug cDNA, clone SSF884. 829 0.0 4
(BJ432589) Dictyostelium discoideum cDNA clone:ddv19k03, 3' ... 864 0.0 4
(BJ360063) Dictyostelium discoideum cDNA clone:ddc4c06, 5' e... 805 0.0 2
(BJ403039) Dictyostelium discoideum cDNA clone:dds18i06, 3' ... 595 0.0 3
(BJ372572) Dictyostelium discoideum cDNA clone:ddc13n04, 3' ... 537 e-155 2
(BJ346283) Dictyostelium discoideum cDNA clone:dda30n12, 3' ... 502 e-151 3
(BJ340744) Dictyostelium discoideum cDNA clone:dda3k13, 3' e... 426 e-135 3
(BJ372076) Dictyostelium discoideum cDNA clone:ddc11n01, 3' ... 404 e-129 3
(BJ427958) Dictyostelium discoideum cDNA clone:ddv10p02, 3' ... 299 4e-99 4
(BJ398172) Dictyostelium discoideum cDNA clone:dds11g08, 3' ... 353 9e-98 2
(AU073080) Dictyostelium discoideum slug cDNA, clone SSF884. 256 2e-78 2
(BJ376166) Dictyostelium discoideum cDNA clone:ddc21o11, 3' ... 266 2e-66 1
(DR947994) EST1139533 Aquilegia cDNA library Aquilegia formo... 103 8e-54 6
(DR947995) EST1139534 Aquilegia cDNA library Aquilegia formo... 103 2e-52 5
(DR944413) EST1135952 Aquilegia cDNA library Aquilegia formo... 96 1e-51 6
(DR944414) EST1135953 Aquilegia cDNA library Aquilegia formo... 96 4e-50 5
(BJ399839) Dictyostelium discoideum cDNA clone:dds7o15, 3' e... 137 1e-46 3
(EJ590759) 1092961048330 Global-Ocean-Sampling_GS-29-01-01-1... 72 2e-36 7
(EH009613) USDA-FP_182793 Lysiphlebus testaceipes adult whol... 88 2e-34 4
(EJ403274) 1093012070158 Global-Ocean-Sampling_GS-28-01-01-1... 60 7e-33 8
(EJ037462) 1095454079106 Global-Ocean-Sampling_GS-26-01-01-1... 54 2e-31 6
(CN760179) ID0AAA27CG09RM1 ApMS Acyrthosiphon pisum cDNA clo... 88 3e-30 4
(EK163416) 1095458041476 Global-Ocean-Sampling_GS-31-01-01-1... 66 3e-29 5
(DT727132) EST1160982 Aquilegia cDNA library Aquilegia formo... 74 2e-27 3
(AY689436) Deerpox virus W-848-83, complete genome. 84 4e-27 13
(AU299272) Cryptomeria japonica mRNA, clone: CM0778, 5' end,... 68 6e-27 3
(CN761831) ID0AAA3AH09RM1 ApMS Acyrthosiphon pisum cDNA clon... 76 7e-27 4
(FC799691) CBGC3119.fwd CBGC Lottia gigantea 15h 18h embryos... 60 4e-25 6
(FF307326) 279368565 Pea aphid whole body normalized full le... 58 5e-25 5
(EJ607013) 1092962015172 Global-Ocean-Sampling_GS-29-01-01-1... 74 8e-25 4
(EJ058460) 1095456049485 Global-Ocean-Sampling_GS-26-01-01-1... 56 2e-24 5
(DV184287) CT033_H11_CT033_3700_91.ab1 C. tentans tissue cul... 54 2e-24 4
(CG966465) MBEIB29TF mth2 Medicago truncatula genomic clone ... 70 3e-24 3
(EK425058) 1095516012427 Global-Ocean-Sampling_GS-31-01-01-1... 52 4e-24 6
(AF336128) Lumpy skin disease virus strain Neethling, 5' par... 50 4e-24 9
(EK460021) 1095469050256 Global-Ocean-Sampling_GS-32-01-01-1... 56 6e-24 5
(CJ373203) Molgula tectiformis cDNA, gastrula/neurula clone:... 50 2e-23 5
(FC734356) CBBG8933.fwd CBBG Lottia gigantea 12,15,18h embry... 60 3e-23 5
(DR918587) EST1110126 Aquilegia cDNA library Aquilegia formo... 66 1e-22 3
(EK382043) 1095469465296 Global-Ocean-Sampling_GS-31-01-01-1... 54 1e-22 6
(EJ573754) 1092960076165 Global-Ocean-Sampling_GS-29-01-01-1... 48 2e-22 6
(EJ613857) 1092963006084 Global-Ocean-Sampling_GS-29-01-01-1... 58 7e-22 5
(FF307208) 279368453 Pea aphid whole body normalized full le... 58 1e-21 4
(DT737241) EST1171090 Aquilegia cDNA library Aquilegia formo... 66 1e-21 3
(EK527098) 1095515646344 Global-Ocean-Sampling_GS-32-01-01-1... 56 2e-21 4
(EJ887130) 1093018423927 Global-Ocean-Sampling_GS-30-02-01-1... 50 5e-21 5
(CJ363637) Molgula tectiformis cDNA, cleaving embryo clone:m... 50 1e-20 5
(EJ791519) 1093017380059 Global-Ocean-Sampling_GS-30-02-01-1... 50 1e-20 5
(X02471) Clam mRNA for ribonucleotide reductase small subuni... 56 1e-20 5
(AY689437) Deerpox virus W-1170-84, complete genome. 68 2e-20 10
(ER334470) 1092344293100 Global-Ocean-Sampling_GS-34-01-01-1... 58 2e-20 5
(EJ323005) 1095403425597 Global-Ocean-Sampling_GS-27-01-01-1... 76 3e-20 3
(X55125) S.solidissima mRNA for M2 (small) subunit of ribonu... 56 3e-20 5
(EK108780) 1092963079211 Global-Ocean-Sampling_GS-31-01-01-1... 66 3e-20 4
(EJ682079) 1092955138755 Global-Ocean-Sampling_GS-30-02-01-1... 80 6e-20 4
(EJ534395) 1092955250118 Global-Ocean-Sampling_GS-29-01-01-1... 64 8e-20 4
(EJ736199) 1092961161416 Global-Ocean-Sampling_GS-30-02-01-1... 80 1e-19 4
(EJ348652) 1092963566054 Global-Ocean-Sampling_GS-28-01-01-1... 62 2e-19 4
(BJ373794) Dictyostelium discoideum cDNA clone:ddc4c06, 3' e... 100 6e-19 2
(CJ410779) Molgula tectiformis cDNA, larva clone:mtlv007l24,... 50 6e-19 4
(CJ413643) Molgula tectiformis cDNA, larva clone:mtlv016e01,... 50 6e-19 4
(CT836776) Oryza sativa (indica cultivar-group) cDNA clone:O... 60 7e-19 5
(EX603480) 255340535 Pea aphid whole body normalized full le... 50 8e-19 4
(EJ214446) 1092351038365 Global-Ocean-Sampling_GS-27-01-01-1... 58 9e-19 4
(EK256786) 1095462014227 Global-Ocean-Sampling_GS-31-01-01-1... 80 1e-18 3
(CJ363754) Molgula tectiformis cDNA, cleaving embryo clone:m... 50 1e-18 4
(EJ416812) 1093012188111 Global-Ocean-Sampling_GS-28-01-01-1... 80 2e-18 3
(DT746839) EST1180688 Aquilegia cDNA library Aquilegia formo... 66 2e-18 3
(CJ385904) Molgula tectiformis cDNA, gastrula/neurula clone:... 50 2e-18 5
(DW656074) CLJ395-D07.y1d-s SHGC-CLJ2 Gasterosteus aculeatus... 70 2e-18 2
(FC727283) CBBG4073.fwd CBBG Lottia gigantea 12,15,18h embry... 60 3e-18 4
(EX622413) 255419394 Pea aphid whole body normalized full le... 50 3e-18 4
(FC843221) CBHN2435.fwd CBHN Metridium senile tentacle Metri... 60 5e-18 3
(EK415773) 1095515461694 Global-Ocean-Sampling_GS-31-01-01-1... 62 6e-18 5
(FC746356) CBBI2447.fwd CBBI Lottia gigantea 26h,37h,61h Lar... 56 9e-18 5
(AF409138) Lumpy skin disease virus isolate Neethling vaccin... 50 9e-18 10
(AR548783) Sequence 3914 from patent US 6747137. 58 1e-17 3
(EK083465) 1092961122175 Global-Ocean-Sampling_GS-31-01-01-1... 56 2e-17 6
(FC725286) CBBG2723.fwd CBBG Lottia gigantea 12,15,18h embry... 60 2e-17 3
(DW107222) CLRX4803.b1_E02.ab1 CLR(XYZ) lettuce serriola Lac... 66 2e-17 5
(ER610118) 1093016303246 Global-Ocean-Sampling_GS-36-01-01-2... 56 2e-17 4
(EJ465987) 1095403007892 Global-Ocean-Sampling_GS-28-01-01-1... 62 2e-17 3
(CJ371455) Molgula tectiformis cDNA, gastrula/neurula clone:... 46 3e-17 4
(EC613993) SAAH-aaa09a07.g1 Agen 0058 Schmidtea mediterranea... 52 3e-17 4
(EC614325) SAAH-aaa12g11.g1 Agen 0058 Schmidtea mediterranea... 52 4e-17 4
(EG344729) SAAH-aad35a09.g1 Agen 0058 Schmidtea mediterranea... 52 4e-17 4
(EE674171) SAAH-aab54f05.g1 Agen 0058 Schmidtea mediterranea... 52 4e-17 4
(DN315850) PL06022A1E12 cDNA from juvenile hermaphodites Sch... 52 4e-17 4
(DN315172) PL06020A2C08 cDNA from juvenile hermaphodites Sch... 52 5e-17 4
(FC719103) CBBG12563.fwd CBBG Lottia gigantea 12,15,18h embr... 60 6e-17 3
(FC743508) CBBI13744.fwd CBBI Lottia gigantea 26h,37h,61h La... 60 6e-17 3
(FC747616) CBBI3339.fwd CBBI Lottia gigantea 26h,37h,61h Lar... 60 6e-17 3
(FC746055) CBBI1863.fwd CBBI Lottia gigantea 26h,37h,61h Lar... 60 7e-17 3
(FC733809) CBBG8173.fwd CBBG Lottia gigantea 12,15,18h embry... 60 7e-17 3
(FC723962) CBBG1811.fwd CBBG Lottia gigantea 12,15,18h embry... 60 7e-17 3
(FC802989) CBGC5475.fwd CBGC Lottia gigantea 15h 18h embryos... 60 7e-17 3

>(L36941) Dictyostelium discoideum ribonucleotide reductase small
subunit gene, complete cds.
Length = 1946

Score = 1217 bits (614), Expect(4) = 0.0
Identities = 614/614 (100%)
Strand = Plus / Plus


Query: 512 tagtcttttaattgaaacttatattaaagataagcaaactaaagataaattatttaatgc 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1082 tagtcttttaattgaaacttatattaaagataagcaaactaaagataaattatttaatgc 1141


Query: 572 aattgaaacaattccatgtattaaaaagaaggcagaatgggcattaagatggataaatga 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1142 aattgaaacaattccatgtattaaaaagaaggcagaatgggcattaagatggataaatga 1201


Query: 632 ttcagattcatttgcagaacgtttggttgcatttgcagcagttgagggtatatttttcag 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1202 ttcagattcatttgcagaacgtttggttgcatttgcagcagttgagggtatatttttcag 1261


Query: 692 tggaagtttttgttcaatattttggttgaaaaagagaggtttaatgcaaggtttaacatt 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1262 tggaagtttttgttcaatattttggttgaaaaagagaggtttaatgcaaggtttaacatt 1321


Query: 752 ttcaaatgaattaatttcacgtgacgaaggtttacattgtgatttcgcatgtcttctcta 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1322 ttcaaatgaattaatttcacgtgacgaaggtttacattgtgatttcgcatgtcttctcta 1381


Query: 812 cacaaagttacaaagaaagttggatccaaaagtcattgagaaaatgataagagatgctgt 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1382 cacaaagttacaaagaaagttggatccaaaagtcattgagaaaatgataagagatgctgt 1441


Query: 872 cgaatgtgaaaaggaattcatttgcgaatcattaccagtggatttaattggtatgaactc 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1442 cgaatgtgaaaaggaattcatttgcgaatcattaccagtggatttaattggtatgaactc 1501


Query: 932 gcgttcaatgtctcaatacattgagttttgtgctgatcgtttagtggtttctttaggtta 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1502 gcgttcaatgtctcaatacattgagttttgtgctgatcgtttagtggtttctttaggtta 1561


Query: 992 caaaaagattttcaactcttcaaatcctttcgaatggatggaaatgatttctttacaaag 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1562 caaaaagattttcaactcttcaaatcctttcgaatggatggaaatgatttctttacaaag 1621


Query: 1052 aaaatcaaactttttcgaaggcaaagttgcagaatacgctaaaactggtgttgcaattca 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1622 aaaatcaaactttttcgaaggcaaagttgcagaatacgctaaaactggtgttgcaattca 1681


Query: 1112 aggaaataatcaac 1125
||||||||||||||
Sbjct: 1682 aggaaataatcaac 1695

Score = 75.8 bits (38), Expect(4) = 0.0
Identities = 38/38 (100%)
Strand = Plus / Plus


Query: 1133 taatcaatcaagaactttagttttagatgaagattttt 1170
||||||||||||||||||||||||||||||||||||||
Sbjct: 1703 taatcaatcaagaactttagttttagatgaagattttt 1740

Score = 42.1 bits (21), Expect(4) = 0.0
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 1206 cagtagtgtttcatttgatag 1226
|||||||||||||||||||||
Sbjct: 1777 cagtagtgtttcatttgatag 1797

Score = 28.2 bits (14), Expect(4) = 0.0
Identities = 14/14 (100%)
Strand = Plus / Plus


Query: 1235 aaaattgtgttttg 1248
||||||||||||||
Sbjct: 1804 aaaattgtgttttg 1817

Score = 408 bits (206), Expect(3) = 0.0
Identities = 206/206 (100%)
Strand = Plus / Plus


Query: 309 ggtaatgataatgttgattgggaatataaattaacagataatgaacgtcatttcatctca 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 ggtaatgataatgttgattgggaatataaattaacagataatgaacgtcatttcatctca 819


Query: 369 catgttttggcattttttgctgcatctgatggtattgtaaatgaaaaccttgcaactaga 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 catgttttggcattttttgctgcatctgatggtattgtaaatgaaaaccttgcaactaga 879


Query: 429 tttatgtctgaagtacaaattccagaagcaagatgtttctatggttttcaaattgcaatt 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 tttatgtctgaagtacaaattccagaagcaagatgtttctatggttttcaaattgcaatt 939


Query: 489 gaaaatatacattctgaaacttatag 514
||||||||||||||||||||||||||
Sbjct: 940 gaaaatatacattctgaaacttatag 965

Score = 272 bits (137), Expect(3) = 0.0
Identities = 137/137 (100%)
Strand = Plus / Plus


Query: 177 gatacattcattgaaccaattctcaaagaaaataaagatagatttgtattatttccaata 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gatacattcattgaaccaattctcaaagaaaataaagatagatttgtattatttccaata 531


Query: 237 aaatacccagatatctggagaatgtataaaaaagcccttgcaagtcattgggtagctgaa 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 aaatacccagatatctggagaatgtataaaaaagcccttgcaagtcattgggtagctgaa 591


Query: 297 gaaattgatcttggtaa 313
|||||||||||||||||
Sbjct: 592 gaaattgatcttggtaa 608

Score = 75.8 bits (38), Expect(3) = 0.0
Identities = 38/38 (100%)
Strand = Plus / Plus


Query: 74 caaaacttaataaaatctcattgtacattaaattttat 111
||||||||||||||||||||||||||||||||||||||
Sbjct: 369 caaaacttaataaaatctcattgtacattaaattttat 406

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,460,029,281
Number of extensions: 87284424
Number of successful extensions: 7203330
Number of sequences better than 10.0: 2671
Length of query: 1319
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1295
Effective length of database: 97,308,875,965
Effective search space: 126014994374675
Effective search space used: 126014994374675
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 8
Homology vs Protein
Query= Contig-U13854-1 (Contig-U13854-1Q) /CSM_Contig/Contig-U13854-1Q.Seq.d
(1319 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(P42521) RecName: Full=Ribonucleoside-diphosphate reductase smal... 642 0.0
CP000383_447(CP000383|pid:none) Cytophaga hutchinsonii ATCC 3340... 424 e-117
CR382128_139(CR382128|pid:none) Yarrowia lipolytica strain CLIB1... 420 e-116
(Q9LSD0) RecName: Full=Ribonucleoside-diphosphate reductase smal... 420 e-116
AB040738_1(AB040738|pid:none) Lentinula edodes Le.rnrB1 mRNA for... 418 e-115
CS559656_1(CS559656|pid:none) Sequence 243 from Patent WO2006032... 417 e-115
BT034287_1(BT034287|pid:none) Zea mays full-length cDNA clone ZM... 417 e-115
EU965840_1(EU965840|pid:none) Zea mays clone 289313 ribonucleosi... 416 e-114
(P49730) RecName: Full=Ribonucleoside-diphosphate reductase smal... 415 e-114
AK073063_1(AK073063|pid:none) Oryza sativa Japonica Group cDNA c... 414 e-114
AM920436_753(AM920436|pid:none) Penicillium chrysogenum Wisconsi... 413 e-114
BT035496_1(BT035496|pid:none) Zea mays full-length cDNA clone ZM... 412 e-113
AP005527_6(AP005527|pid:none) Oryza sativa Japonica Group genomi... 411 e-113
AE017351_255(AE017351|pid:none) Cryptococcus neoformans var. neo... 410 e-113
AE016814_51(AE016814|pid:none) Ashbya gossypii (= Eremothecium g... 410 e-113
(O15910) RecName: Full=Ribonucleoside-diphosphate reductase smal... 410 e-113
(P50651) RecName: Full=Ribonucleoside-diphosphate reductase smal... 410 e-113
AM270327_27(AM270327|pid:none) Aspergillus niger contig An14c020... 407 e-112
CS559934_1(CS559934|pid:none) Sequence 521 from Patent WO2006032... 406 e-112
AF310625_1(AF310625|pid:none) Aspergillus nidulans ribonucleotid... 404 e-111
U30494_1(U30494|pid:none) Urechis caupo ribonuleotide reductase ... 403 e-111
(Q9C167) RecName: Full=Ribonucleoside-diphosphate reductase smal... 402 e-110
CP001327_626(CP001327|pid:none) Micromonas sp. RCC299 chromosome... 401 e-110
BT045084_1(BT045084|pid:none) Salmo salar clone ssal-rgf-511-262... 400 e-110
BC061353_1(BC061353|pid:none) Xenopus tropicalis ribonucleotide ... 399 e-109
AY678275_59(AY678275|pid:none) Vaccinia virus strain LC16m8, com... 399 e-109
AF438165_39(AF438165|pid:none) Camelpox virus M-96 from Kazakhst... 399 e-109
(O57175) RecName: Full=Ribonucleoside-diphosphate reductase smal... 399 e-109
DQ437594_44(DQ437594|pid:none) Taterapox virus strain Dahomey 19... 399 e-109
(P11158) RecName: Full=Ribonucleoside-diphosphate reductase smal... 399 e-109
CR762018_1(CR762018|pid:none) Xenopus tropicalis finished cDNA, ... 399 e-109
BC080161_1(BC080161|pid:none) Xenopus tropicalis ribonucleotide ... 398 e-109
BC047975_1(BC047975|pid:none) Xenopus laevis ribonucleotide redu... 398 e-109
B72154(B72154) E4L protein - variola minor virus (strain Garcia-... 397 e-109
DQ437593_48(DQ437593|pid:none) Cowpox virus strain Germany 91-3,... 397 e-109
CR954212_121(CR954212|pid:none) Ostreococcus tauri strain OTTH05... 397 e-109
CU928166_157(CU928166|pid:none) Kluyveromyces thermotolerans str... 397 e-109
AY313847_51(AY313847|pid:none) Vaccinia virus strain Acambis clo... 397 e-109
S68538(S68538) ribonucleoside-diphosphate reductase (EC 1.17.4.1... 397 e-109
FM992689_276(FM992689|pid:none) Candida dubliniensis CD36 chromo... 397 e-109
X94355_47(X94355|pid:none) Cowpox virus strain GRI-90, complete ... 397 e-109
(P29883) RecName: Full=Ribonucleoside-diphosphate reductase smal... 396 e-109
(Q60561) RecName: Full=Ribonucleoside-diphosphate reductase subu... 396 e-108
DQ437580_31(DQ437580|pid:none) Variola virus strain Afghanistan ... 396 e-108
(Q4KLN6) RecName: Full=Ribonucleoside-diphosphate reductase subu... 395 e-108
AF380138_36(AF380138|pid:none) Monkeypox virus strain Zaire-96-I... 395 e-108
AF095689_42(AF095689|pid:none) Vaccinia virus (strain Tian Tan) ... 394 e-108
AF117061_1(AF117061|pid:none) Aedes albopictus ribonucleotide re... 394 e-108
BC075746_1(BC075746|pid:none) Danio rerio ribonucleotide reducta... 394 e-108
AM398681_450(AM398681|pid:none) Flavobacterium psychrophilum JIP... 394 e-108
(P07201) RecName: Full=Ribonucleoside-diphosphate reductase smal... 394 e-108
CP001328_450(CP001328|pid:none) Micromonas sp. RCC299 chromosome... 393 e-108
(P48592) RecName: Full=Ribonucleoside-diphosphate reductase subu... 393 e-108
BC106682_1(BC106682|pid:none) Xenopus laevis MGC78958 protein, m... 393 e-108
AK168117_1(AK168117|pid:none) Mus musculus CRL-1722 L5178Y-R cDN... 392 e-107
CP000685_519(CP000685|pid:none) Flavobacterium johnsoniae UW101,... 392 e-107
(P33799) RecName: Full=Ribonucleoside-diphosphate reductase smal... 392 e-107
(P50650) RecName: Full=Ribonucleoside-diphosphate reductase smal... 391 e-107
AM910995_418(AM910995|pid:none) Plasmodium knowlesi strain H chr... 390 e-107
AE014187_50(AE014187|pid:none) Plasmodium falciparum 3D7 chromos... 390 e-107
(Q4R7Q7) RecName: Full=Ribonucleoside-diphosphate reductase subu... 390 e-107
BC158190_1(BC158190|pid:none) Xenopus tropicalis hypothetical pr... 389 e-106
CT005261_127(CT005261|pid:none) Leishmania major strain Friedlin... 388 e-106
AF049129_1(AF049129|pid:none) Leishmania mexicana amazonensis ri... 388 e-106
(Q4R741) RecName: Full=Ribonucleoside-diphosphate reductase subu... 387 e-106
(Q5R9G0) RecName: Full=Ribonucleoside-diphosphate reductase subu... 387 e-106
AM502245_137(AM502245|pid:none) Leishmania infantum chromosome 27. 387 e-106
T46249(T46249)hypothetical protein DKFZp761E1312.1 - human (frag... 387 e-106
(Q6PEE3) RecName: Full=Ribonucleoside-diphosphate reductase subu... 387 e-106
(Q9NTD8) RecName: Full=Ribonucleoside-diphosphate reductase subu... 387 e-106
CP000079_212(CP000079|pid:none) Leishmania major strain Friedlin... 385 e-105
AK001965_1(AK001965|pid:none) Homo sapiens cDNA FLJ11103 fis, cl... 385 e-105
CU928179_591(CU928179|pid:none) Zygosaccharomyces rouxii strain ... 385 e-105
EU552530_19(EU552530|pid:none) Myxoma virus strain 6918, complet... 385 e-105
AL807244_5(AL807244|pid:none) Zebrafish DNA sequence from clone ... 384 e-105
CU207366_3424(CU207366|pid:none) Gramella forsetii KT0803 comple... 383 e-105
BC108037_1(BC108037|pid:none) Danio rerio ribonucleotide reducta... 383 e-105
(P42170) RecName: Full=Ribonucleoside-diphosphate reductase smal... 383 e-105
AF170722_19(AF170722|pid:none) Rabbit fibroma virus, complete ge... 382 e-104
AY689437_26(AY689437|pid:none) Deerpox virus W-1170-84, complete... 380 e-104
FM992689_686(FM992689|pid:none) Candida dubliniensis CD36 chromo... 380 e-104
S34808(S34808) ribonucleoside-diphosphate reductase (EC 1.17.4.1... 377 e-103
AY689436_25(AY689436|pid:none) Deerpox virus W-848-83, complete ... 377 e-103
AF325155_63(AF325155|pid:none) Spodoptera litura nucleopolyhedro... 376 e-103
AB429251_1(AB429251|pid:none) Dicyema japonicum rrm2 gene for ri... 375 e-102
AF325528_20(AF325528|pid:none) Lumpy skin disease virus NI-2490 ... 375 e-102
(P50649) RecName: Full=Ribonucleoside-diphosphate reductase smal... 374 e-102
AF336128_13(AF336128|pid:none) Lumpy skin disease virus strain N... 374 e-102
M17221_1(M17221|pid:none) S.cerevisiae ribonucleotide reductase ... 372 e-101
AJ890364_26(AJ890364|pid:none) Emiliania huxleyi virus 86 isolat... 371 e-101
CS559640_1(CS559640|pid:none) Sequence 227 from Patent WO2006032... 369 e-100
X02471_1(X02471|pid:none) Clam mRNA for ribonucleotide reductase... 362 1e-98
(Q8SRR2) RecName: Full=Ribonucleoside-diphosphate reductase smal... 361 4e-98
RDSS2R(A22259)ribonucleoside-diphosphate reductase (EC 1.17.4.1)... 355 2e-96
CR627376_1(CR627376|pid:none) Homo sapiens mRNA; cDNA DKFZp686M0... 351 4e-95
DQ491003_578(DQ491003|pid:none) Paramecium bursaria Chlorella vi... 347 4e-94
T17978(T17978) probable ribonucleoside-diphosphate reductase (EC... 346 9e-94
(P32209) RecName: Full=Ribonucleoside-diphosphate reductase smal... 342 2e-92
AP008984_30(AP008984|pid:none) Cyprinid herpesvirus 3 DNA, compl... 338 3e-91
BC105511_1(BC105511|pid:none) Bos taurus ribonucleotide reductas... 337 6e-91
AB163437_1(AB163437|pid:none) Homo sapiens p53R2 mRNA for p53-in... 334 5e-90
DQ491002_641(DQ491002|pid:none) Paramecium bursaria Chlorella vi... 333 8e-90
EF101928_35(EF101928|pid:none) Acanthocystis turfacea Chlorella ... 330 9e-89
DQ066939_1(DQ066939|pid:none) Carassius carassius ribonucleotide... 327 6e-88
AY922312_1(AY922312|pid:none) Haemonchus contortus ribonucleotid... 323 1e-86
DQ491001_653(DQ491001|pid:none) Paramecium bursaria chlorella vi... 322 2e-86
EF576541_1(EF576541|pid:none) Oryza sativa (indica cultivar-grou... 320 7e-86
DQ517337_89(DQ517337|pid:none) Trichoplusia ni ascovirus 2c, com... 318 4e-85
(Q9QTF2) RecName: Full=Ribonucleoside-diphosphate reductase smal... 308 4e-82
AY894343_27(AY894343|pid:none) Orange-spotted grouper iridovirus... 308 4e-82
AF371960_24(AF371960|pid:none) Infectious spleen and kidney necr... 306 1e-81
EU752935_1(EU752935|pid:none) Populus tremula isolate swl71b-17E... 306 1e-81
EU752934_1(EU752934|pid:none) Populus tremula isolate swl71b-17E... 305 3e-81
AY532606_26(AY532606|pid:none) Rock bream iridovirus strain RBIV... 303 7e-81
EU752936_1(EU752936|pid:none) Populus tremula isolate swl71b-32E... 303 7e-81
AF267731_1(AF267731|pid:none) White spot syndrome virus ribonucl... 302 2e-80
EU752912_1(EU752912|pid:none) Populus tremula isolate swl71.2-31... 301 5e-80
EU752914_1(EU752914|pid:none) Populus tremula isolate swl71.2-43... 300 1e-79
EU752906_1(EU752906|pid:none) Populus tremula isolate swl71.2-14... 298 4e-79
EU752918_1(EU752918|pid:none) Populus tremula isolate swl71.2-63... 298 4e-79
EU752926_1(EU752926|pid:none) Populus tremula isolate swl71.2-85... 295 2e-78
EU780426_46(EU780426|pid:none) Spodoptera litura nucleopolyhedro... 294 6e-78
EU752908_1(EU752908|pid:none) Populus tremula isolate swl71.2-16... 294 6e-78
EU752925_1(EU752925|pid:none) Populus tremula isolate swl71.2-84... 294 6e-78
EU752910_1(EU752910|pid:none) Populus tremula isolate swl71.2-24... 294 6e-78
AY864330_122(AY864330|pid:none) Chrysodeixis chalcites nucleopol... 292 2e-77
EU752890_1(EU752890|pid:none) Populus tremula isolate swl71.1-95... 291 5e-77
EU752904_1(EU752904|pid:none) Populus tremula isolate swl71.2-3 ... 290 1e-76
EU752871_1(EU752871|pid:none) Populus tremula isolate swl71.1-16... 290 1e-76
EU752913_1(EU752913|pid:none) Populus tremula isolate swl71.2-31... 290 1e-76
EU752923_1(EU752923|pid:none) Populus tremula isolate swl71.2-76... 288 2e-76
EU916176_94(EU916176|pid:none) Feldmannia species virus isolate ... 288 3e-76
AF539999_57(AF539999|pid:none) Mamestra configurata nucleopolyhe... 288 3e-76
EU752909_1(EU752909|pid:none) Populus tremula isolate swl71.2-16... 286 9e-76
AY225133_19(AY225133|pid:none) Feldmannia irregularis virus a st... 285 3e-75
EU730893_51(EU730893|pid:none) Helicoverpa armigera multiple nuc... 282 2e-74
EU742801_1(EU742801|pid:none) Amphidinium carterae strain CCMP13... 278 3e-73
(P49723) RecName: Full=Ribonucleoside-diphosphate reductase smal... 271 5e-71
DQ837165_117(DQ837165|pid:none) Ecotropis obliqua NPV strain A1,... 271 5e-71
CR954208_53(CR954208|pid:none) Ostreococcus tauri strain OTTH059... 261 3e-68
CR380953_175(CR380953|pid:none) Candida glabrata strain CBS138 c... 256 1e-66
BT051679_1(BT051679|pid:none) Medicago truncatula clone MTYF5_F6... 232 2e-59
U58756_10(U58756|pid:none) Caenorhabditis elegans cosmid F58F9, ... 229 2e-58
AM712240_44(AM712240|pid:none) African swine fever virus OURT 88... 218 3e-55
AM712239_45(AM712239|pid:none) African swine fever virus Benin 9... 218 3e-55
(P42492) RecName: Full=Ribonucleoside-diphosphate reductase smal... 218 4e-55
(P0C8I0) RecName: Full=Ribonucleoside-diphosphate reductase smal... 217 9e-55
AY444742_1(AY444742|pid:none) Aedes albopictus ribonucleotide re... 216 1e-54
BX842651_161(BX842651|pid:none) Bdellovibrio bacteriovorus compl... 194 6e-48
BA000030_3033(BA000030|pid:none) Streptomyces avermitilis MA-468... 189 2e-46
T29884(T29884) hypothetical protein F19G12.2 - Caenorhabditis el... 186 1e-45
AP009493_2300(AP009493|pid:none) Streptomyces griseus subsp. gri... 184 6e-45
CP000481_1721(CP000481|pid:none) Acidothermus cellulolyticus 11B... 184 6e-45
AJ277778_2(AJ277778|pid:none) Streptomyces clavuligerus ribonucl... 182 2e-44
AM743169_235(AM743169|pid:none) Stenotrophomonas maltophilia K27... 179 2e-43
AJ295338_2(AJ295338|pid:none) Streptomyces jumonjinensis nrdA ge... 178 3e-43
CP000113_4927(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 178 4e-43
BC028932_1(BC028932|pid:none) Homo sapiens, Similar to ribonucle... 177 8e-43
BT029524_1(BT029524|pid:none) Arabidopsis thaliana At5g40942 mRN... 170 9e-41
CP001472_2010(CP001472|pid:none) Acidobacterium capsulatum ATCC ... 166 1e-39
DQ417160_1(DQ417160|pid:none) Ictalurus punctatus clone SAAD03R ... 160 7e-38
AM910990_158(AM910990|pid:none) Plasmodium knowlesi strain H chr... 158 4e-37
AE014185_152(AE014185|pid:none) Plasmodium falciparum 3D7 chromo... 149 2e-34
CP000453_2086(CP000453|pid:none) Alkalilimnicola ehrlichii MLHE-... 143 1e-32
AM286690_710(AM286690|pid:none) Alcanivorax borkumensis SK2, com... 142 2e-32
CP001339_2584(CP001339|pid:none) Thioalkalivibrio sp. HL-EbGR7, ... 142 2e-32
CP001096_2586(CP001096|pid:none) Rhodopseudomonas palustris TIE-... 140 1e-31
AE017282_1541(AE017282|pid:none) Methylococcus capsulatus str. B... 138 4e-31
CR628337_1748(CR628337|pid:none) Legionella pneumophila str. Len... 135 4e-30
CP001013_382(CP001013|pid:none) Leptothrix cholodnii SP-6, compl... 135 4e-30
CP000304_1613(CP000304|pid:none) Pseudomonas stutzeri A1501, com... 134 6e-30
AP009385_440(AP009385|pid:none) Burkholderia multivorans ATCC 17... 134 7e-30
CP000863_702(CP000863|pid:none) Acinetobacter baumannii ACICU, c... 134 7e-30
CP000075_3720(CP000075|pid:none) Pseudomonas syringae pv. syring... 134 7e-30
EF089399_13(EF089399|pid:none) Uncultured marine bacterium EB0_3... 134 7e-30
AM181176_4660(AM181176|pid:none) Pseudomonas fluorescens SBW25 c... 134 7e-30
CP000868_2777(CP000868|pid:none) Burkholderia multivorans ATCC 1... 134 7e-30
CP000127_2427(CP000127|pid:none) Nitrosococcus oceani ATCC 19707... 134 7e-30
CP000076_4457(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c... 134 7e-30
AM181176_2714(AM181176|pid:none) Pseudomonas fluorescens SBW25 c... 134 7e-30
CP000058_3575(CP000058|pid:none) Pseudomonas syringae pv. phaseo... 134 7e-30
AE017354_1746(AE017354|pid:none) Legionella pneumophila subsp. p... 134 1e-29
CP000949_1190(CP000949|pid:none) Pseudomonas putida W619, comple... 134 1e-29
CP000712_1193(CP000712|pid:none) Pseudomonas putida F1, complete... 134 1e-29
AE016853_1625(AE016853|pid:none) Pseudomonas syringae pv. tomato... 134 1e-29
AE015451_1167(AE015451|pid:none) Pseudomonas putida KT2440 compl... 134 1e-29
CP000884_1497(CP000884|pid:none) Delftia acidovorans SPH-1, comp... 133 1e-29
CP000526_424(CP000526|pid:none) Burkholderia mallei SAVP1 chromo... 133 2e-29
CP000934_1525(CP000934|pid:none) Cellvibrio japonicus Ueda107, c... 132 2e-29
CP000088_2995(CP000088|pid:none) Thermobifida fusca YX, complete... 132 2e-29
CP000319_3490(CP000319|pid:none) Nitrobacter hamburgensis X14, c... 132 4e-29
CP001020_1580(CP001020|pid:none) Coxiella burnetii CbuK_Q154, co... 132 4e-29
CP001019_423(CP001019|pid:none) Coxiella burnetii CbuG_Q212, com... 132 4e-29
CP000512_843(CP000512|pid:none) Acidovorax citrulli AAC00-1, com... 132 4e-29
CP000555_3204(CP000555|pid:none) Methylibium petroleiphilum PM1,... 132 4e-29
CP000116_1975(CP000116|pid:none) Thiobacillus denitrificans ATCC... 132 4e-29
CP001157_3216(CP001157|pid:none) Azotobacter vinelandii DJ, comp... 132 4e-29
AM747720_3433(AM747720|pid:none) Burkholderia cenocepacia J2315 ... 131 5e-29
CP000958_562(CP000958|pid:none) Burkholderia cenocepacia MC0-3 c... 130 1e-28
AP009153_1748(AP009153|pid:none) Gemmatimonas aurantiaca T-27 DN... 130 1e-28
CP000301_3479(CP000301|pid:none) Rhodopseudomonas palustris BisB... 130 1e-28
CP000378_111(CP000378|pid:none) Burkholderia cenocepacia AU 1054... 130 1e-28
CP001154_1789(CP001154|pid:none) Laribacter hongkongensis HLHK9,... 130 1e-28
CP000270_3872(CP000270|pid:none) Burkholderia xenovorans LB400 c... 130 1e-28
CP001052_3372(CP001052|pid:none) Burkholderia phytofirmans PsJN ... 130 1e-28
AM420293_1250(AM420293|pid:none) Saccharopolyspora erythraea NRR... 129 2e-28
CP001614_643(CP001614|pid:none) Teredinibacter turnerae T7901, c... 129 2e-28
CP000655_204(CP000655|pid:none) Polynucleobacter necessarius sub... 129 3e-28
A84389(A84389) ribonucleoside reductase small chain [imported] -... 129 3e-28
AM260479_3157(AM260479|pid:none) Ralstonia eutropha H16 chromoso... 128 4e-28
CP000450_2384(CP000450|pid:none) Nitrosomonas eutropha C91, comp... 128 5e-28
CU914168_2563(CU914168|pid:none) Ralstonia solanacearum strain I... 128 5e-28
CU694389_13(CU694389|pid:none) Ralstonia solanacearum strain Mol... 128 5e-28
AM902716_583(AM902716|pid:none) Bordetella petrii strain DSM 128... 128 5e-28
CP001068_3002(CP001068|pid:none) Ralstonia pickettii 12J chromos... 127 7e-28
CP000282_2455(CP000282|pid:none) Saccharophagus degradans 2-40, ... 127 7e-28
CP000352_3073(CP000352|pid:none) Ralstonia metallidurans CH34, c... 127 9e-28
CP000316_1091(CP000316|pid:none) Polaromonas sp. JS666, complete... 127 9e-28
CP000155_6626(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 126 2e-27
CU207211_2618(CU207211|pid:none) Herminiimonas arsenicoxydans ch... 126 2e-27
AM711867_2456(AM711867|pid:none) Clavibacter michiganensis subsp... 125 3e-27
CP000269_2978(CP000269|pid:none) Janthinobacterium sp. Marseille... 124 1e-26
CP000051_862(CP000051|pid:none) Chlamydia trachomatis A/HAR-13, ... 121 5e-26
(O84835) RecName: Full=Ribonucleoside-diphosphate reductase subu... 121 5e-26
CP000975_1072(CP000975|pid:none) Methylacidiphilum infernorum V4... 121 6e-26
(Q9PL92) RecName: Full=Ribonucleoside-diphosphate reductase subu... 121 6e-26
AP006861_238(AP006861|pid:none) Chlamydophila felis Fe/C-56 DNA,... 119 2e-25
CR940347_24(CR940347|pid:none) Theileria annulata strain Ankara ... 119 2e-25
AE015925_764(AE015925|pid:none) Chlamydophila caviae GPIC, compl... 119 2e-25
CP000282_3450(CP000282|pid:none) Saccharophagus degradans 2-40, ... 118 5e-25
AE009440_1018(AE009440|pid:none) Chlamydophila pneumoniae TW-183... 117 7e-25
(Q9Z6S4) RecName: Full=Ribonucleoside-diphosphate reductase subu... 117 7e-25
CP001504_478(CP001504|pid:none) Burkholderia glumae BGR1 chromos... 116 2e-24
AE014184_682(AE014184|pid:none) Tropheryma whipplei str. Twist, ... 115 4e-24
CR848038_733(CR848038|pid:none) Chlamydophila abortus strain S26... 114 6e-24
DQ149153_42(DQ149153|pid:none) Cercopithecine herpesvirus 16 str... 112 3e-23
EF102103_1(EF102103|pid:none) Allochromatium vinosum ribonucleos... 110 9e-23
AP010838_21(AP010838|pid:none) Equid herpesvirus 9 DNA, complete... 109 2e-22
AY714813_42(AY714813|pid:none) Cercopithecine herpesvirus 2, com... 109 3e-22
AY261359_16(AY261359|pid:none) Bovine herpesvirus 5 strain SV507... 108 3e-22
AB096160_41(AB096160|pid:none) Cercopithecine herpesvirus 1 DNA,... 108 3e-22
DQ491001_654(DQ491001|pid:none) Paramecium bursaria chlorella vi... 108 4e-22
AY372243_34(AY372243|pid:none) Psittacid herpesvirus 1 isolate 9... 107 1e-21
CP001275_1355(CP001275|pid:none) Thermomicrobium roseum DSM 5159... 107 1e-21
AJ006454_2(AJ006454|pid:none) Felid herpesvirus 1 RR1, RR2 and U... 106 2e-21
AF210726_67(AF210726|pid:none) Macaca mulatta rhadinovirus 26-95... 106 2e-21
CP000449_398(CP000449|pid:none) Maricaulis maris MCS10, complete... 106 2e-21
(P28847) RecName: Full=Ribonucleoside-diphosphate reductase smal... 105 3e-21
EU119871_2(EU119871|pid:none) Leporid herpesvirus 4 ribonucleoti... 105 4e-21
DQ890022_652(DQ890022|pid:none) Paramecium bursaria Chlorella vi... 105 4e-21
(P50645) RecName: Full=Ribonucleoside-diphosphate reductase smal... 105 4e-21
FJ213607_4(FJ213607|pid:none) Duck enteritis virus UL37, UL38, U... 101 5e-20
AY240610_1(AY240610|pid:none) Human herpesvirus 1 isolate SK024 ... 101 5e-20
AY528864_118(AY528864|pid:none) Macaca mulatta rhadinovirus, com... 101 5e-20
AY240630_1(AY240630|pid:none) Human herpesvirus 1 isolate E03 UL... 101 7e-20
AY240636_1(AY240636|pid:none) Human herpesvirus 1 isolate E12 UL... 100 9e-20
AM233362_983(AM233362|pid:none) Francisella tularensis subsp. ho... 100 9e-20
AY871917_1(AY871917|pid:none) Synthetic construct hypothetical p... 100 9e-20
CP000608_823(CP000608|pid:none) Francisella tularensis subsp. tu... 100 9e-20
DQ889502_40(DQ889502|pid:none) Human herpesvirus 1 strain HF clo... 100 1e-19
AY240499_1(AY240499|pid:none) Human herpesvirus 1 isolate N002 U... 100 1e-19
FJ593289_43(FJ593289|pid:none) Human herpesvirus 1 transgenic st... 100 1e-19
AY240436_1(AY240436|pid:none) Human herpesvirus 1 isolate P01 UL... 100 1e-19
AY240638_1(AY240638|pid:none) Human herpesvirus 1 isolate E14 UL... 100 1e-19
AY240594_1(AY240594|pid:none) Human herpesvirus 1 isolate SK003 ... 100 2e-19
AY240502_1(AY240502|pid:none) Human herpesvirus 1 isolate N005 U... 100 2e-19
AF105037_56(AF105037|pid:none) Murid herpesvirus 4 complete geno... 100 2e-19
AY240577_1(AY240577|pid:none) Human herpesvirus 1 isolate Y028 U... 100 2e-19
AF282130_43(AF282130|pid:none) Meleagrid herpesvirus 1 unique lo... 100 2e-19
AM999887_20(AM999887|pid:none) Wolbachia endosymbiont of Culex q... 99 3e-19
AP008981_1457(AP008981|pid:none) Orientia tsutsugamushi str. Ike... 99 3e-19
CP000937_1618(CP000937|pid:none) Francisella philomiragia subsp.... 99 3e-19
AF147806_61(AF147806|pid:none) Gallid herpesvirus 2, complete ge... 99 3e-19
(P50644) RecName: Full=Ribonucleoside-diphosphate reductase smal... 99 3e-19
AE017196_188(AE017196|pid:none) Wolbachia endosymbiont of Drosop... 99 3e-19
(P69520) RecName: Full=Ribonucleoside-diphosphate reductase smal... 99 4e-19
CP000774_505(CP000774|pid:none) Parvibaculum lavamentivorans DS-... 98 6e-19
AF319782_58(AF319782|pid:none) Callitrichine herpesvirus 3 strai... 98 6e-19
AY240602_1(AY240602|pid:none) Human herpesvirus 1 isolate SK012 ... 98 6e-19
AJ410493_64(AJ410493|pid:none) Saimiriine herpesvirus 2 complete... 98 8e-19
AF083424_55(AF083424|pid:none) Ateline herpesvirus 3 complete ge... 98 8e-19
(Q01038) RecName: Full=Ribonucleoside-diphosphate reductase smal... 98 8e-19
AM494475_27(AM494475|pid:none) Orientia tsutsugamushi Boryong co... 96 3e-18
L40429_2(L40429|pid:none) Gallid herpesvirus 2 ribonucleotide re... 96 4e-18
CP000847_644(CP000847|pid:none) Rickettsia akari str. Hartford, ... 94 8e-18
CP000409_580(CP000409|pid:none) Rickettsia canadensis str. McKie... 94 1e-17
CP000683_472(CP000683|pid:none) Rickettsia massiliae MTU5, compl... 93 2e-17
CP000158_369(CP000158|pid:none) Hyphomonas neptunium ATCC 15444,... 93 2e-17
AE017197_479(AE017197|pid:none) Rickettsia typhi str. Wilmington... 93 2e-17
CP000153_13(CP000153|pid:none) Sulfurimonas denitrificans DSM 12... 93 2e-17
AF148805_68(AF148805|pid:none) Human herpesvirus 8 type P isolat... 92 4e-17
CP001229_1554(CP001229|pid:none) Sulfurihydrogenibium azorense A... 92 4e-17
AY839756_58(AY839756|pid:none) Ovine herpesvirus 2 strain BJ1035... 92 5e-17
AF303741_377(AF303741|pid:none) Chilo iridescent virus complete ... 91 7e-17
CP000053_710(CP000053|pid:none) Rickettsia felis URRWXCal2, comp... 91 7e-17
CP000394_888(CP000394|pid:none) Granulibacter bethesdensis CGDNI... 91 7e-17
S55655(S55655) ribonucleoside-diphosphate reductase (EC 1.17.4.1... 91 7e-17
AE009951_692(AE009951|pid:none) Fusobacterium nucleatum subsp. n... 90 2e-16
CP001072_1058(CP001072|pid:none) Helicobacter pylori Shi470, com... 89 3e-16
CP001173_1009(CP001173|pid:none) Helicobacter pylori G27, comple... 89 4e-16
CP000613_3424(CP000613|pid:none) Rhodospirillum centenum SW, com... 89 4e-16
CP001230_540(CP001230|pid:none) Persephonella marina EX-H1, comp... 89 5e-16
AM260522_377(AM260522|pid:none) Helicobacter acinonychis str. Sh... 88 8e-16
CP001217_1049(CP001217|pid:none) Helicobacter pylori P12, comple... 88 8e-16
(Q9ZKC3) RecName: Full=Ribonucleoside-diphosphate reductase subu... 88 8e-16
CP000030_328(CP000030|pid:none) Anaplasma marginale str. St. Mar... 87 1e-15
CP001079_323(CP001079|pid:none) Anaplasma marginale str. Florida... 87 1e-15
CR925678_334(CR925678|pid:none) Ehrlichia ruminantium str. Welge... 87 1e-15
(P55983) RecName: Full=Ribonucleoside-diphosphate reductase subu... 87 2e-15
AE008692_443(AE008692|pid:none) Zymomonas mobilis subsp. mobilis... 86 2e-15
CP000885_3185(CP000885|pid:none) Clostridium phytofermentans ISD... 86 2e-15
D00870_3(D00870|pid:none) Herpes simplex virus type 2 UL42, UL41... 86 2e-15
CP000248_270(CP000248|pid:none) Novosphingobium aromaticivorans ... 86 2e-15
AF005370_56(AF005370|pid:none) Alcelaphine herpesvirus 1 L-DNA, ... 86 3e-15
AY208819_1(AY208819|pid:none) Rickettsia rickettsii ribonucleoti... 86 3e-15
CP001080_428(CP001080|pid:none) Sulfurihydrogenibium sp. YO3AOP1... 86 3e-15
AF318573_59(AF318573|pid:none) Bovine herpesvirus 4 long unique ... 86 4e-15
CP000312_2269(CP000312|pid:none) Clostridium perfringens SM101, ... 86 4e-15
CP000107_303(CP000107|pid:none) Ehrlichia canis str. Jake, compl... 85 5e-15
AP009178_47(AP009178|pid:none) Nitratiruptor sp. SB155-2 genomic... 85 5e-15
CP000237_501(CP000237|pid:none) Neorickettsia sennetsu strain Mi... 84 1e-14
AM412317_2822(AM412317|pid:none) Clostridium botulinum A str. AT... 84 1e-14
CP000728_2722(CP000728|pid:none) Clostridium botulinum F str. La... 84 1e-14
AE001437_3223(AE001437|pid:none) Clostridium acetobutylicum ATCC... 84 1e-14
CP000951_374(CP000951|pid:none) Synechococcus sp. PCC 7002, comp... 82 3e-14
FM162234_22(FM162234|pid:none) Bradyrhizobium elkanii type III s... 82 3e-14
CP001083_2929(CP001083|pid:none) Clostridium botulinum Ba4 str. ... 82 3e-14
DQ643392_48(DQ643392|pid:none) Aedes taeniorhynchus iridescent v... 81 7e-14
BA000040_6(BA000040|pid:none) Bradyrhizobium japonicum USDA 110 ... 81 1e-13
CR626927_2629(CR626927|pid:none) Bacteroides fragilis NCTC 9343,... 79 5e-13
AY043208_2(AY043208|pid:none) Bacteroides fragilis ribonucleosid... 79 5e-13
CP001291_5207(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 78 8e-13
CP001279_385(CP001279|pid:none) Nautilia profundicola AmH, compl... 77 2e-12
CP000361_21(CP000361|pid:none) Arcobacter butzleri RM4018, compl... 76 2e-12
AY666015_22(AY666015|pid:none) Grouper iridovirus, complete geno... 76 2e-12
CP000767_1897(CP000767|pid:none) Campylobacter curvus 525.92, co... 76 2e-12
CP000776_181(CP000776|pid:none) Campylobacter hominis ATCC BAA-3... 76 3e-12
CP000487_29(CP000487|pid:none) Campylobacter fetus subsp. fetus ... 76 3e-12
CP000821_2303(CP000821|pid:none) Shewanella sediminis HAW-EB3, c... 75 7e-12
DQ003638_125(DQ003638|pid:none) Listeria phage A511, complete ge... 74 9e-12
BA000043_912(BA000043|pid:none) Geobacillus kaustophilus HTA426 ... 74 9e-12
CP000792_1930(CP000792|pid:none) Campylobacter concisus 13826, c... 74 9e-12
AY521625_47(AY521625|pid:none) Singapore grouper iridovirus, com... 74 2e-11
CP001078_255(CP001078|pid:none) Clostridium botulinum E3 str. Al... 73 2e-11
CP001056_255(CP001056|pid:none) Clostridium botulinum B str. Ekl... 73 2e-11
CP000932_1448(CP000932|pid:none) Campylobacter lari RM2100, comp... 73 2e-11
AF1714(AF1714) ribonucleoside-diphosphate reductase, chain beta ... 73 2e-11
AE017262_2163(AE017262|pid:none) Listeria monocytogenes str. 4b ... 73 3e-11
(Q9KFH7) RecName: Full=Ribonucleoside-diphosphate reductase subu... 72 4e-11
CR954246_1378(CR954246|pid:none) Pseudoalteromonas haloplanktis ... 72 4e-11
CP000139_3001(CP000139|pid:none) Bacteroides vulgatus ATCC 8482,... 72 6e-11
CP001103_2106(CP001103|pid:none) Alteromonas macleodii 'Deep eco... 71 8e-11
CP000109_1762(CP000109|pid:none) Thiomicrospira crunogena XCL-2,... 71 1e-10
CP000768_187(CP000768|pid:none) Campylobacter jejuni subsp. doyl... 71 1e-10
CP000557_787(CP000557|pid:none) Geobacillus thermodenitrificans ... 71 1e-10
CP000388_2457(CP000388|pid:none) Pseudoalteromonas atlantica T6c... 70 1e-10
CP000463_3151(CP000463|pid:none) Rhodopseudomonas palustris BisA... 70 2e-10
(Q8TGJ8) Uncharacterized protein YJL026C-A. &AF480004_1(AF48000... 70 2e-10
AM942759_1718(AM942759|pid:none) Proteus mirabilis strain HI4320... 69 3e-10
FM211046_25(FM211046|pid:none) Photorhabdus asymbiotica subsp. a... 69 5e-10
BX571869_90(BX571869|pid:none) Photorhabdus luminescens subsp. l... 69 5e-10
CU638872_116(CU638872|pid:none) Escherichia coli LF82 plasmide, ... 68 8e-10
CP000922_390(CP000922|pid:none) Anoxybacillus flavithermus WK1, ... 67 1e-09
(P57275) RecName: Full=Ribonucleoside-diphosphate reductase subu... 67 1e-09
AM743169_2684(AM743169|pid:none) Stenotrophomonas maltophilia K2... 67 1e-09
BX571658_64(BX571658|pid:none) Wolinella succinogenes, complete ... 67 1e-09
CP001111_2293(CP001111|pid:none) Stenotrophomonas maltophilia R5... 66 2e-09
EF460875_75(EF460875|pid:none) Enterobacteria phage phiEcoM-GJ1,... 66 2e-09
CP000721_195(CP000721|pid:none) Clostridium beijerinckii NCIMB 8... 66 3e-09
AP008971_1236(AP008971|pid:none) Finegoldia magna ATCC 29328 DNA... 66 3e-09
AE003849_1194(AE003849|pid:none) Xylella fastidiosa 9a5c, comple... 66 3e-09
AL513384_121(AL513384|pid:none) Salmonella enterica subsp. enter... 65 4e-09
AE017226_332(AE017226|pid:none) Treponema denticola ATCC 35405, ... 65 4e-09
AE008923_4017(AE008923|pid:none) Xanthomonas axonopodis pv. citr... 65 5e-09
CP000789_2631(CP000789|pid:none) Vibrio harveyi ATCC BAA-1116 ch... 65 5e-09
CP000967_4650(CP000967|pid:none) Xanthomonas oryzae pv. oryzae P... 65 5e-09
AE013598_465(AE013598|pid:none) Xanthomonas oryzae pv. oryzae KA... 65 5e-09
AF482758_52(AF482758|pid:none) Cowpox virus strain Brighton Red,... 65 5e-09
CP001485_2056(CP001485|pid:none) Vibrio cholerae MJ-1236 chromos... 65 7e-09
AE003852_1236(AE003852|pid:none) Vibrio cholerae O1 biovar eltor... 65 7e-09
AM180355_3074(AM180355|pid:none) Clostridium difficile 630 compl... 65 7e-09
(Q8K9W4) RecName: Full=Ribonucleoside-diphosphate reductase subu... 65 7e-09
BA000031_1935(BA000031|pid:none) Vibrio parahaemolyticus RIMD 22... 64 9e-09
AE017045_45(AE017045|pid:none) Yersinia pestis biovar Microtus s... 64 9e-09
AE008922_3929(AE008922|pid:none) Xanthomonas campestris pv. camp... 64 9e-09
AP008937_1672(AP008937|pid:none) Lactobacillus fermentum IFO 395... 64 1e-08
CP000503_1920(CP000503|pid:none) Shewanella sp. W3-18-1, complet... 64 2e-08
AJ630128_151(AJ630128|pid:none) Bacteriophage S-PM2 complete gen... 63 2e-08
CP000302_1939(CP000302|pid:none) Shewanella denitrificans OS217,... 63 2e-08
CP000822_517(CP000822|pid:none) Citrobacter koseri ATCC BAA-895,... 62 4e-08
AM933173_2227(AM933173|pid:none) Salmonella enterica subsp. ente... 62 4e-08
CP000026_549(CP000026|pid:none) Salmonella enterica subsp. enter... 62 4e-08
CP000469_1954(CP000469|pid:none) Shewanella sp. ANA-3, complete ... 62 4e-08
CP000970_2314(CP000970|pid:none) Escherichia coli SMS-3-5, compl... 62 5e-08
CP000507_1720(CP000507|pid:none) Shewanella amazonensis SB2B, co... 62 5e-08
AE005674_2317(AE005674|pid:none) Shigella flexneri 2a str. 301, ... 62 5e-08
CU928162_2642(CU928162|pid:none) Escherichia coli ED1a chromosom... 62 5e-08
CP000946_1391(CP000946|pid:none) Escherichia coli ATCC 8739, com... 62 5e-08
AE014075_2706(AE014075|pid:none) Escherichia coli CFT073, comple... 62 5e-08
AD0791(AD0791) ribonucleoside-diphosphate reductase (EC 1.17.4.1... 62 5e-08
AE014299_2363(AE014299|pid:none) Shewanella oneidensis MR-1, com... 62 6e-08
CP001050_1301(CP001050|pid:none) Neisseria gonorrhoeae NCCP11945... 61 1e-07
CP000713_1559(CP000713|pid:none) Psychrobacter sp. PRwf-1, compl... 61 1e-07
AE004969_569(AE004969|pid:none) Neisseria gonorrhoeae FA 1090, c... 61 1e-07
(P20561) Uncharacterized 11.6 kDa protein. &AF095689_43(AF09568... 60 1e-07
AP009247_461(AP009247|pid:none) Candidatus Vesicomyosocius okuta... 60 1e-07
CP001616_1413(CP001616|pid:none) Tolumonas auensis DSM 9187, com... 60 2e-07
CR378671_49(CR378671|pid:none) Photobacterium profundum SS9; seg... 60 2e-07
CP000606_1938(CP000606|pid:none) Shewanella loihica PV-4, comple... 60 2e-07
CP000783_927(CP000783|pid:none) Enterobacter sakazakii ATCC BAA-... 60 2e-07
AE017340_1360(AE017340|pid:none) Idiomarina loihiensis L2TR, com... 60 2e-07
CP001213_306(CP001213|pid:none) Bifidobacterium animalis subsp. ... 59 3e-07
AY939844_209(AY939844|pid:none) Cyanophage P-SSM2, complete geno... 59 3e-07
FP236842_1281(FP236842|pid:none) Erwinia pyrifoliae strain Ep1/9... 59 3e-07
AE002098_1233(AE002098|pid:none) Neisseria meningitidis MC58, co... 59 4e-07
AM421808_1135(AM421808|pid:none) Neisseria meningitidis serogrou... 59 4e-07
AL157959_1321(AL157959|pid:none) Neisseria meningitidis serogrou... 59 4e-07
CP000931_2020(CP000931|pid:none) Shewanella halifaxensis HAW-EB4... 58 7e-07
FM178379_1770(FM178379|pid:none) Aliivibrio salmonicida LFI1238 ... 58 9e-07
CP000436_968(CP000436|pid:none) Haemophilus somnus 129PT, comple... 57 1e-06
AE017143_1464(AE017143|pid:none) Haemophilus ducreyi strain 3500... 57 1e-06
CP000961_2280(CP000961|pid:none) Shewanella woodyi ATCC 51908, c... 57 1e-06
CP000851_2054(CP000851|pid:none) Shewanella pealeana ATCC 700345... 57 1e-06
CP000020_1201(CP000020|pid:none) Vibrio fischeri ES114 chromosom... 57 1e-06
CP000569_979(CP000569|pid:none) Actinobacillus pleuropneumoniae ... 57 2e-06
AP009179_252(AP009179|pid:none) Sulfurovum sp. NBC37-1 genomic D... 57 2e-06
AM286415_1333(AM286415|pid:none) Yersinia enterocolitica subsp. ... 57 2e-06
CP000462_2275(CP000462|pid:none) Aeromonas hydrophila subsp. hyd... 57 2e-06
CP000644_1801(CP000644|pid:none) Aeromonas salmonicida subsp. sa... 56 3e-06
CP000082_1268(CP000082|pid:none) Psychrobacter arcticus 273-4, c... 56 3e-06
CP000746_1456(CP000746|pid:none) Actinobacillus succinogenes 130... 56 3e-06
AM286415_882(AM286415|pid:none) Yersinia enterocolitica subsp. e... 56 3e-06
AY678275_61(AY678275|pid:none) Vaccinia virus strain LC16m8, com... 56 3e-06
CP000807_110(CP000807|pid:none) Cyanothece sp. ATCC 51142 linear... 56 3e-06
AP008232_1585(AP008232|pid:none) Sodalis glossinidius str. 'mors... 56 3e-06
CP000560_1634(CP000560|pid:none) Bacillus amyloliquefaciens FZB4... 55 4e-06
CP000753_2256(CP000753|pid:none) Shewanella baltica OS185, compl... 55 4e-06
AE016827_968(AE016827|pid:none) Mannheimia succiniciproducens MB... 55 4e-06
AY557633_1(AY557633|pid:none) Rana grylio virus 9506 ribonucleot... 55 6e-06
CP000472_2370(CP000472|pid:none) Shewanella piezotolerans WP3, c... 55 6e-06
CP001600_2539(CP001600|pid:none) Edwardsiella ictaluri 93-146, c... 55 6e-06
AH0148(AH0148) ribonucleoside-diphosphate reductase (EC 1.17.4.1... 55 7e-06
(P50621) RecName: Full=Ribonucleoside-diphosphate reductase subu... 55 7e-06
AF012906_2(AF012906|pid:none) Bacillus subtilis yojP gene, parti... 54 1e-05
(P43755) RecName: Full=Ribonucleoside-diphosphate reductase subu... 54 1e-05
BX248583_452(BX248583|pid:none) Blochmannia floridanus complete ... 54 1e-05
CP000454_2333(CP000454|pid:none) Arthrobacter sp. FB24, complete... 54 1e-05
AY176327_80(AY176327|pid:none) Staphylococcus phage K, complete ... 54 1e-05
AB231700_2(AB231700|pid:none) Microcystis phage Ma-LMM01 DNA, co... 54 1e-05
BA000028_3087(BA000028|pid:none) Oceanobacillus iheyensis HTE831... 54 1e-05
CP000569_147(CP000569|pid:none) Actinobacillus pleuropneumoniae ... 54 2e-05
AF332093_190(AF332093|pid:none) White spot syndrome virus, compl... 53 2e-05
CP001095_2395(CP001095|pid:none) Bifidobacterium longum subsp. i... 53 2e-05
CP000238_350(CP000238|pid:none) Baumannia cicadellinicola str. H... 53 2e-05
CP000910_3433(CP000910|pid:none) Renibacterium salmoninarum ATCC... 53 3e-05
AE001826_98(AE001826|pid:none) Deinococcus radiodurans R1 plasmi... 53 3e-05
AY009089_44(AY009089|pid:none) Camelpox virus CMS, complete geno... 53 3e-05
AF389451_71(AF389451|pid:none) Tiger frog virus, complete genome. 53 3e-05
CP000480_1009(CP000480|pid:none) Mycobacterium smegmatis str. MC... 53 3e-05
(Q89AS5) RecName: Full=Ribonucleoside-diphosphate reductase subu... 52 4e-05
CP000384_1815(CP000384|pid:none) Mycobacterium sp. MCS, complete... 52 4e-05
AP006725_3877(AP006725|pid:none) Klebsiella pneumoniae NTUH-K204... 52 4e-05
FM954972_1798(FM954972|pid:none) Vibrio splendidus LGP32 chromos... 52 4e-05
CP000921_965(CP000921|pid:none) Streptococcus pneumoniae Taiwan1... 52 5e-05
AE007317_1066(AE007317|pid:none) Streptococcus pneumoniae R6, co... 52 5e-05
CP001321_1215(CP001321|pid:none) Haemophilus parasuis SH0165, co... 52 5e-05
CP000387_729(CP000387|pid:none) Streptococcus sanguinis SK36, co... 52 5e-05
CP000001_1224(CP000001|pid:none) Bacillus cereus E33L, complete ... 52 6e-05
AE016879_1258(AE016879|pid:none) Bacillus anthracis str. Ames, c... 52 6e-05
FM211187_1029(FM211187|pid:none) Streptococcus pneumoniae ATCC 7... 52 6e-05
AF099142_1(AF099142|pid:none) White spot syndrome virus small su... 52 6e-05
BX248359_224(BX248359|pid:none) Corynebacterium diphtheriae grav... 51 8e-05
U41099_1(U41099|pid:none) Mycobacterium tuberculosis ribonucleot... 51 8e-05
CP000605_1463(CP000605|pid:none) Bifidobacterium longum DJO10A, ... 51 1e-04
CP000653_3130(CP000653|pid:none) Enterobacter sp. 638, complete ... 50 1e-04
CP000656_4259(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, c... 50 1e-04
(Q10840) RecName: Full=Ribonucleoside-diphosphate reductase subu... 50 2e-04
AE016958_3095(AE016958|pid:none) Mycobacterium avium subsp. para... 50 2e-04
CP000479_3772(CP000479|pid:none) Mycobacterium avium 104, comple... 50 2e-04
AP011115_6495(AP011115|pid:none) Rhodococcus opacus B4 DNA, comp... 50 2e-04
CP000783_565(CP000783|pid:none) Enterobacter sakazakii ATCC BAA-... 50 2e-04
AE015929_514(AE015929|pid:none) Staphylococcus epidermidis ATCC ... 50 2e-04
CP000284_1221(CP000284|pid:none) Methylobacillus flagellatus KT,... 50 2e-04
AM487454_1(AM487454|pid:none) Vitis vinifera contig VV78X030559.... 50 2e-04
AY623744_8(AY623744|pid:none) Borrelia hermsii hypothetical prot... 49 3e-04
CP000857_2754(CP000857|pid:none) Salmonella enterica subsp. ente... 49 3e-04
AE017220_2742(AE017220|pid:none) Salmonella enterica subsp. ente... 49 3e-04
CP000826_3710(CP000826|pid:none) Serratia proteamaculans 568, co... 49 3e-04
AE016877_1227(AE016877|pid:none) Bacillus cereus ATCC 14579, com... 49 4e-04
EU043131_4(EU043131|pid:none) Bacillus thuringiensis serovar pak... 49 4e-04
CP001144_2829(CP001144|pid:none) Salmonella enterica subsp. ente... 49 4e-04
EU043128_3(EU043128|pid:none) Bacillus thuringiensis serovar aiz... 49 4e-04
EU043134_3(EU043134|pid:none) Bacillus thuringiensis serovar gal... 49 4e-04
AF050168_1(AF050168|pid:none) Corynebacterium ammoniagenes ribon... 49 4e-04
BX571863_75(BX571863|pid:none) Photorhabdus luminescens subsp. l... 49 4e-04
AP009152_1402(AP009152|pid:none) Kocuria rhizophila DC2201 DNA, ... 49 4e-04
CP001186_1244(CP001186|pid:none) Bacillus cereus G9842, complete... 48 7e-04
CP001176_1280(CP001176|pid:none) Bacillus cereus B4264, complete... 48 7e-04
EU043151_3(EU043151|pid:none) Bacillus thuringiensis serovar tou... 48 7e-04
(P17424) RecName: Full=Ribonucleoside-diphosphate reductase 2 su... 48 9e-04

>(P42521) RecName: Full=Ribonucleoside-diphosphate reductase small
subunit; EC=1.17.4.1; AltName:
Full=Ribonucleotide reductase small subunit;
&AC116984_36(AC116984|pid:none)
&L36941_1(L36941|pid:none)
Length = 338

Score = 642 bits (1656), Expect = 0.0
Identities = 318/330 (96%), Positives = 318/330 (96%)
Frame = +3

Query: 177 DTFIEPILKENKDRFVLFPIKYPDIWRMYKKALASHWVAEEIDLGNDNVDWEYKLTDNER 356
DTFIEPILKENKDRFVLFPIKYPDIWRMYKKALASHWVAEEIDLGNDNVDWEYKLTDNER
Sbjct: 8 DTFIEPILKENKDRFVLFPIKYPDIWRMYKKALASHWVAEEIDLGNDNVDWEYKLTDNER 67

Query: 357 HFISHVLAFFAASDGIVNENLATRFMSEVQIPEARCFYGFQIAIENIHSETYSLLIETYI 536
HFISHVLAFFAASDGIVNENLATRFMSEVQIPEARCFYGFQIAIENIHSETYSLLIETYI
Sbjct: 68 HFISHVLAFFAASDGIVNENLATRFMSEVQIPEARCFYGFQIAIENIHSETYSLLIETYI 127

Query: 537 KDKQTKDKLFNAIETIPCIKKKAEWALRWINDSDSFAERLVAFAAVEXXXXXXXXXXXXW 716
KDKQTKDKLFNAIETIPCIKKKAEWALRWINDSDSFAERLVAFAAVE W
Sbjct: 128 KDKQTKDKLFNAIETIPCIKKKAEWALRWINDSDSFAERLVAFAAVEGIFFSGSFCSIFW 187

Query: 717 LKKRGLMQGLTFSNELISRDEGLHCDFACLLYTKLQRKLDPKVIEKMIRDAVECEKEFIC 896
LKKRGLMQGLTFSNELISRDEGLHCDFACLLYTKLQRKLDPKVIEKMIRDAVECEKEFIC
Sbjct: 188 LKKRGLMQGLTFSNELISRDEGLHCDFACLLYTKLQRKLDPKVIEKMIRDAVECEKEFIC 247

Query: 897 ESLPVDLIGMNSRSMSQYIEFCADRLVVSLGYKKIFNSSNPFEWMEMISLQRKSNFFEGK 1076
ESLPVDLIGMNSRSMSQYIEFCADRLVVSLGYKKIFNSSNPFEWMEMISLQRKSNFFEGK
Sbjct: 248 ESLPVDLIGMNSRSMSQYIEFCADRLVVSLGYKKIFNSSNPFEWMEMISLQRKSNFFEGK 307

Query: 1077 VAEYAKTGVAIQGNNQQKNNQSRTLVLDED 1166
VAEYAKTGVAIQGNNQQKNNQSRTLVLDED
Sbjct: 308 VAEYAKTGVAIQGNNQQKNNQSRTLVLDED 337

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,662,648,385
Number of extensions: 30316212
Number of successful extensions: 79728
Number of sequences better than 10.0: 584
Number of HSP's gapped: 78785
Number of HSP's successfully gapped: 642
Length of query: 439
Length of database: 1,051,180,864
Length adjustment: 132
Effective length of query: 307
Effective length of database: 623,955,076
Effective search space: 191554208332
Effective search space used: 191554208332
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.72 gvh: 0.29 alm: 0.33 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
44.0 %: cytoplasmic
4.0 %: mitochondrial
4.0 %: plasma membrane

>> prediction for Contig-U13854-1 is nuc

VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 2
AH (FL, L) 0
AF (FL, S) 5
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 6
CH (FL, L) 1
CF (FL, S) 4
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0