>Contig-U13852-1 (Contig-U13852-1Q) /CSM_Contig/Contig-U13852-1Q.Seq.d
AACAACAACAACAACAACAACAACAACAACAACAACAACAAAATCAACAA
CAACAAGCACCACCACAACAACAACAAGCACCACAACAACAACAACAACA
AAATACACAATTTAAAAACAAAACGGGACAATCAGATATTAATGATGTTC
AAGATTCATTATCACAACTTAATATTAAACAACAACAACAACCACCACAA
CAACCACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAGCCACAAGCAGATTTGGATGATAGTAAAAATA
ATGAAACCTTTGATAACTCCTCAAATCTTTATNCAGGTACTTTAGCAGAA
ATATCGACAATATCTAGAATCAATGATGGAACTTATCAACAACAACATCA
ACAACAACAACAACAACAATATCATCAACAATCCCATCAACAATCTCATC
AACAATCTCAACAACAATCACAACAATCTCAACATCACCATCAACAACAA
CCACAACCACAACCACAACCACAACCACAACCACAACCACAACCACAACC
ACAACCACAACCACAACCACAACCACAACCACAACCACAACCACAACAAC
AACAACCACAACACCAATCACAACAACACCAACCACAACCACAACAACCA
CAACAACGACAACAACCACAACACCAACCATATCATCAACAACAATCATA
CCAACAACAACAACAACAACAACAACAACAATATCAACAACAGCAACAAC
AGCAACAACAACAATATCAACAACAACAAATGTCACAAAATCAAAATCAA
AATCAATCACAACAACAACAACAATCAGGTCAATTAGGATTTGAAGAAGC
AATGATACTAACAAGACATATGATGGATATAAGTTTTAAAAATCTACCAG
ATTTTAAAGATTACGAAAGAATACCAACATTTATACCCAGAAATCCAAAA
CCTGTACCACAATATTATCCACAATCAACTTTACCATTATTTGAATCACC
AAACGTTTTTGAGAAATTTGATATCGATACCTTGTTTTTCATTTTCTATT
TCAAACAAGGAACTTATCANCAATATCAAGCAGCTAAAGAATTAAAGAAA
CAAGGTTGGAGATATCATAAAAAATATCTCACCTGGTTTAGAAGACATGA
AGAACCAAAAGAAATCACAAATGAATTCGAACAAGGTACCTATGTTTATT
TTGATTATGAAACTGGTTGGTGTCAAAGAAAGAAAACAGAGTTCACTTTT
GAATATAGATTTTTAGAAGAGTAAATAAATAAATAATTTAANTAAAAAC

est1=AFA872F,1,663
est2=CHN570F,219,798
est3=AHO118Z,634,1154
est4=SLF577Z,1086,1300

QQQQQQQQQQQQQNQQQQAPPQQQQAPQQQQQQNTQFKNKTGQSDINDVQDSLSQLNIKQ
QQQPPQQPQQQQQQQQQQQQQQQQQQQQQPQADLDDSKNNETFDNSSNLYXGTLAEISTI
SRINDGTYQQQHQQQQQQQYHQQSHQQSHQQSQQQSQQSQHHHQQQPQPQPQPQPQPQPQ
PQPQPQPQPQPQPQPQPQQQQPQHQSQQHQPQPQQPQQRQQPQHQPYHQQQSYQQQQQQQ
QQQYQQQQQQQQQQYQQQQMSQNQNQNQSQQQQQSGQLGFEEAMILTRHMMDISFKNLPD
FKDYERIPTFIPRNPKPVPQYYPQSTLPLFESPNVFEKFDIDTLFFIFYFKQGTYXQYQA
AKELKKQGWRYHKKYLTWFRRHEEPKEITNEFEQGTYVYFDYETGWCQRKKTEFTFEYRF
LEE*ink*fx*k

Frame A:
nnnnnnnnnnnnnkinnnkhhhnnnkhhnnnnnkihnlktkrdnqilmmfkihyhnliln
nnnnhhnnhnnnnnnnnnnnnnnnnnnnnshkqiwmivkimkplitpqifxqvl*qkyrq
ylesmmelinnninnnnnnniinnpinnlinnlnnnhnnlnitinnnhnhnhnhnhnhnh
nhnhnhnhnhnhnhnhnhnnnnhntnhnntnhnhnnhnndnnhntnhiinnnhtnnnnnn
nnnninnsnnsnnnninnnkchkikikinhnnnnnqvn*dlkkq*y*qdi*wi*vlkiyq
ilkitkeyqhlypeiqnlyhniihnqlyhylnhqtflrnlisipcfsfsisnkelixnik
qlkn*rnkvgdiiknispgledmknqkksqmnsnkvpmfilimklvgvkerkqssllnid
f*ksk*innlxkn


Frame B:
tttttttttttttkstttsttttttstttttttkyti*kqngtiry**csrfiitt*y*t
tttttttttttttttttttttttttttttatsrfg***k**nl**llkslxryfsrnidn
i*nq*wnlstttsttttttisstipstisstisttittistspstttttttttttttttt
ttttttttttttttttttttttttpitttpttttttttttttttptissttiiptttttt
tttisttattatttistttnvtksksksitttttirsiri*rsndtnktydgykf*kstr
f*rlrkntniytqksktcttilstinftii*itkrf*ei*yrylvfhflfqtrnlsxiss
s*riketrleis*kishlv*kt*rtkrnhk*irtrylclf*l*nwlvskkenrvhf*i*i
frrvnk*ii*xk


Frame C:
QQQQQQQQQQQQQNQQQQAPPQQQQAPQQQQQQNTQFKNKTGQSDINDVQDSLSQLNIKQ
QQQPPQQPQQQQQQQQQQQQQQQQQQQQQPQADLDDSKNNETFDNSSNLYXGTLAEISTI
SRINDGTYQQQHQQQQQQQYHQQSHQQSHQQSQQQSQQSQHHHQQQPQPQPQPQPQPQPQ
PQPQPQPQPQPQPQPQPQQQQPQHQSQQHQPQPQQPQQRQQPQHQPYHQQQSYQQQQQQQ
QQQYQQQQQQQQQQYQQQQMSQNQNQNQSQQQQQSGQLGFEEAMILTRHMMDISFKNLPD
FKDYERIPTFIPRNPKPVPQYYPQSTLPLFESPNVFEKFDIDTLFFIFYFKQGTYXQYQA
AKELKKQGWRYHKKYLTWFRRHEEPKEITNEFEQGTYVYFDYETGWCQRKKTEFTFEYRF
LEE*ink*fx*k

Query= Contig-U13852-1 (Contig-U13852-1Q)
/CSM_Contig/Contig-U13852-1Q.Seq.d
         (1299 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13852-1 (Contig-U13852-1Q) /CSM_Contig/Conti...   924  0.0
Contig-U14141-1 (Contig-U14141-1Q) /CSM_Contig/Conti...   184  2e-46
Contig-U10358-1 (Contig-U10358-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U11453-1 (Contig-U11453-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U12475-1 (Contig-U12475-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U11929-1 (Contig-U11929-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U11487-1 (Contig-U11487-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U09476-1 (Contig-U09476-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U14766-1 (Contig-U14766-1Q) /CSM_Contig/Conti...    36  0.092
Contig-U14258-1 (Contig-U14258-1Q) /CSM_Contig/Conti...    36  0.092

>Contig-U13852-1 (Contig-U13852-1Q) /CSM_Contig/Contig-U13852-1Q.Seq.d
          Length = 1299

 Score =  924 bits (466), Expect = 0.0
 Identities = 472/472 (100%)
 Strand = Plus / Plus

                                                                        
Query: 828  ggtcaattaggatttgaagaagcaatgatactaacaagacatatgatggatataagtttt 887
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828  ggtcaattaggatttgaagaagcaatgatactaacaagacatatgatggatataagtttt 887

                                                                        
Query: 888  aaaaatctaccagattttaaagattacgaaagaataccaacatttatacccagaaatcca 947
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888  aaaaatctaccagattttaaagattacgaaagaataccaacatttatacccagaaatcca 947

                                                                        
Query: 948  aaacctgtaccacaatattatccacaatcaactttaccattatttgaatcaccaaacgtt 1007
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948  aaacctgtaccacaatattatccacaatcaactttaccattatttgaatcaccaaacgtt 1007

                                                                        
Query: 1008 tttgagaaatttgatatcgataccttgtttttcattttctatttcaaacaaggaacttat 1067
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1008 tttgagaaatttgatatcgataccttgtttttcattttctatttcaaacaaggaacttat 1067

                                                                        
Query: 1068 cancaatatcaagcagctaaagaattaaagaaacaaggttggagatatcataaaaaatat 1127
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1068 cancaatatcaagcagctaaagaattaaagaaacaaggttggagatatcataaaaaatat 1127

                                                                        
Query: 1128 ctcacctggtttagaagacatgaagaaccaaaagaaatcacaaatgaattcgaacaaggt 1187
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1128 ctcacctggtttagaagacatgaagaaccaaaagaaatcacaaatgaattcgaacaaggt 1187

                                                                        
Query: 1188 acctatgtttattttgattatgaaactggttggtgtcaaagaaagaaaacagagttcact 1247
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1188 acctatgtttattttgattatgaaactggttggtgtcaaagaaagaaaacagagttcact 1247

                                                                
Query: 1248 tttgaatatagatttttagaagagtaaataaataaataatttaantaaaaac 1299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1248 tttgaatatagatttttagaagagtaaataaataaataatttaantaaaaac 1299


 Score =  224 bits (113), Expect = 2e-58
 Identities = 116/116 (100%)
 Strand = Plus / Plus

                                                                       
Query: 269 gccacaagcagatttggatgatagtaaaaataatgaaacctttgataactcctcaaatct 328
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gccacaagcagatttggatgatagtaaaaataatgaaacctttgataactcctcaaatct 328

                                                                   
Query: 329 ttatncaggtactttagcagaaatatcgacaatatctagaatcaatgatggaactt 384
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ttatncaggtactttagcagaaatatcgacaatatctagaatcaatgatggaactt 384


 Score =  105 bits (53), Expect = 1e-22
 Identities = 53/53 (100%)
 Strand = Plus / Plus

                                                                
Query: 125 gggacaatcagatattaatgatgttcaagattcattatcacaacttaatatta 177
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gggacaatcagatattaatgatgttcaagattcattatcacaacttaatatta 177


>Contig-U14141-1 (Contig-U14141-1Q) /CSM_Contig/Contig-U14141-1Q.Seq.d
          Length = 273

 Score =  184 bits (93), Expect = 2e-46
 Identities = 209/263 (79%)
 Strand = Plus / Plus

                                                                        
Query: 942  aatccaaaacctgtaccacaatattatccacaatcaactttaccattatttgaatcacca 1001
            ||||| |||||||  || ||||||||||| | | | ||||| ||  |||||||||| || 
Sbjct: 11   aatccnaaacctggnccccaatattatccccnancnactttnccnntatttgaatccccn 70

                                                                        
Query: 1002 aacgtttttgagaaatttgatatcgataccttgtttttcattttctatttcaaacaagga 1061
            || | |||||| |||||||| || || ||| || ||||| |||| |||||| ||||||| 
Sbjct: 71   aangnttttganaaatttganatnganaccntgnttttcnttttttatttcnaacaaggn 130

                                                                        
Query: 1062 acttatcancaatatcaagcagctaaagaattaaagaaacaaggttggagatatcataaa 1121
            | |||||  ||| ||| ||||| ||||  |||||| |||||||| ||||| | | |||||
Sbjct: 131  anttatcnacaanatcnagcagntaaannattaaanaaacaaggntggagntntnataaa 190

                                                                        
Query: 1122 aaatatctcacctggtttagaagacatgaagaaccaaaagaaatcacaaatgaattcgaa 1181
            ||| || || ||||| ||| || |||||||| ||| ||| ||||  | || ||||| |||
Sbjct: 191  aaanatntcncctggnttanaanacatgaagnaccnaaanaaatnccnaangaatttgaa 250

                                   
Query: 1182 caaggtacctatgtttattttga 1204
            ||||| ||||||| |||||||||
Sbjct: 251  caagggacctatgnttattttga 273


>Contig-U10358-1 (Contig-U10358-1Q) /CSM_Contig/Contig-U10358-1Q.Seq.d
          Length = 1240

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 868 atatgatggatataagttttaaaaat 893
           |||||||||||| |||||||||||||
Sbjct: 550 atatgatggataaaagttttaaaaat 575


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,500
Number of Sequences: 6905
Number of extensions: 14500
Number of successful extensions: 3411
Number of sequences better than 10.0: 593
length of query: 1299
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1283
effective length of database: 5,564,391
effective search space: 7139113653
effective search space used: 7139113653
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)

Query= Contig-U13852-1 (Contig-U13852-1Q) /CSM_Contig/Contig-U13852-1Q.Seq.d
         (1299 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC115599) Dictyostelium discoideum chromosome 2 map 4229098...   910   0.0    3
(BJ356031) Dictyostelium discoideum cDNA clone:dda59c05, 3' ...   626   e-175  1
(AU053048) Dictyostelium discoideum slug cDNA, clone SLF577.      418   e-112  1
(BJ325871) Dictyostelium discoideum cDNA clone:dda2p18, 5' e...   176   3e-63  2
(BJ369186) Dictyostelium discoideum cDNA clone:ddc49k17, 5' ...   218   4e-52  1
(BJ356541) Dictyostelium discoideum cDNA clone:dda60l13, 3' ...   186   1e-42  1
(DV150413) CV03082B2G01.f1 CV03-normalized library Euphorbia...    50   9e-08  2
(DV133107) CV03065X1B09.f1 CV03-normalized library Euphorbia...    50   1e-07  2
(ES625224) NGPQ634TR NGPP Nasonia giraulti cDNA, mRNA sequence.    40   0.011  2
(EV420904) 210788131 NGP Nasonia giraulti cDNA clone 159C11 ...    40   0.011  2
(AM738834) Cucumis melo subsp. melo EST, clone 15d_02-F03-M13R.    44   0.020  2
(FF380752) CASLC93TF CASL Manihot esculenta cDNA 5', mRNA se...    48   0.14   2
(CK646738) c.12.J18.5 CM523-7 cassava lambda zap Manihot esc...    48   0.16   2
(ES422218) pm_OSU_shoot_MH_2003-04_009C04 Douglas-fir maximu...    42   0.16   2
(ES427183) pm_OSU_shoot_CD_2003-04_027H09 Douglas-fir cold d...    42   0.20   2
(AC162896) Mus musculus chromosome 5, clone RP24-318J14, com...    50   0.21   1
(AC129981) Mus musculus chromosome 5, clone RP23-114I13, com...    50   0.21   1
(DV150075) CV03081B2E06.f1 CV03-normalized library Euphorbia...    50   0.21   1
(CV150312) Mdfrt3074l06.y1 Mdfrt Malus x domestica cDNA clon...    50   0.21   1
(CV150297) Mdfrt3074h10.y1 Mdfrt Malus x domestica cDNA clon...    50   0.21   1
(CV085729) Mdfrt3079c06.y1 Mdfrt Malus x domestica cDNA clon...    50   0.21   1
(CV085722) Mdfrt3079a08.y1 Mdfrt Malus x domestica cDNA clon...    50   0.21   1
(CN899581) 010715ABAA001602HT (ABAA) Pacific Rose spur buds ...    50   0.21   1
(AC101706) Mus musculus chromosome 15, clone RP23-256L18, co...    38   0.31   6
(CU770701) A BAC library has been constructed from PN40024 g...    36   0.62   2
(CU571079) Zebrafish DNA sequence from clone CH73-386O14 in ...    48   0.84   1
(BX248326) Zebrafish DNA sequence from clone DKEY-260N20 in ...    48   0.84   1
(AC136146) Mus musculus BAC clone RP23-4H17 from chromosome ...    48   0.84   1
(AC122417) Mus musculus BAC clone RP24-159C12 from chromosom...    48   0.84   1
(AC216740) MACACA MULATTA BAC clone CH250-257M3 from chromos...    48   0.84   1
(AC214547) MACACA MULATTA BAC clone CH250-374O20 from chromo...    48   0.84   1
(AX356487) Sequence 121 from Patent WO0181622.                     48   0.84   1
(AR346527) Sequence 1138 from patent US 6583275.                   48   0.84   1
(AC012510) Homo sapiens BAC clone RP11-548H3 from 2, complet...    48   0.84   1
(AC146351) Macaca mulatta clone CH250-149O24, WORKING DRAFT ...    48   0.84   1
(AC134656) Rattus norvegicus clone CH230-12B15, *** SEQUENCI...    48   0.84   1
(AC118865) Rattus norvegicus clone CH230-351D12, *** SEQUENC...    48   0.84   1
(AC106688) Rattus norvegicus clone CH230-61G6, *** SEQUENCIN...    48   0.84   1
(AC096701) Rattus norvegicus clone CH230-154P12, *** SEQUENC...    48   0.84   1
(AC064861) Homo sapiens chromosome 2 clone RP11-361I4, WORKI...    48   0.84   1
(AK153650) Mus musculus 3 days neonate thymus cDNA, RIKEN fu...    48   0.84   1
(AZ928756) 479.dif17f09.s1 Saccharomyces kluyveri Lachancea ...    48   0.84   1
(AZ316420) 1M0034K03R Mouse 10kb plasmid UUGC1M library Mus ...    48   0.84   1
(BX191973) Danio rerio genomic clone DKEY-202C19, genomic su...    48   0.84   1
(DN486236) P009C12.3pR Populus petioles cDNA library Populus...    48   0.84   1
(DA039247) Homo sapiens cDNA clone BLADE2000132, 5' end, mRN...    48   0.84   1
(CV242565) WS02515.B21_G15 PT-MB-N-A-15 Populus trichocarpa ...    48   0.84   1
(CV231345) WS0194.B21_E07 PT-DX-N-A-10 Populus trichocarpa c...    48   0.84   1
(CJ137570) Mus musculus 3 days neonate thymus cDNA, RIKEN fu...    48   0.84   1
(CA335527) NISC_lt12f02.y1 COGENE 8.5 EPT Homo sapiens cDNA ...    48   0.84   1
(CX303361) C08030D08SK PhyRootSw1 Citrus sinensis cDNA clone...    32   1.6    3
(AC099722) Mus musculus chromosome 3, clone RP23-282E13, com...    34   1.7    2
(AC124536) Mus musculus BAC clone RP23-332H4 from chromosome...    34   1.7    2
(CB293561) UCRCS01_06bc04_b1 Washington Navel orange cold ac...    32   2.1    3
(CW455585) fsbb001f200i11k0 Sorghum methylation filtered lib...    36   2.3    2
(ES424585) pm_OSU_shoot_MH_2003-04_046H12 Douglas-fir maximu...    42   2.3    2
(ED552185) Amel_4.0_Unscaffolded_10943 Apis mellifera BCM WG...    38   2.5    2
(AM440050) Vitis vinifera contig VV78X276727.18, whole genom...    44   2.5    2
(AC130026) Rattus norvegicus clone CH230-379A17, *** SEQUENC...    42   2.7    2
(AM437560) Vitis vinifera contig VV78X104206.6, whole genome...    36   3.3    2
(CT027645) Zebrafish DNA sequence from clone CH211-214L23 in...    46   3.3    1
(CR759845) Zebrafish DNA sequence from clone DKEY-199L17 in ...    46   3.3    1
(CR376834) Zebrafish DNA sequence from clone CH211-247J24 in...    46   3.3    1
(BX950190) Zebrafish DNA sequence from clone DKEY-190N7 in l...    46   3.3    1
(BX682531) Zebrafish DNA sequence from clone CH211-12C17 in ...    46   3.3    1
(BX276115) Zebrafish DNA sequence from clone DKEY-274M17 in ...    46   3.3    1
(BX005201) Zebrafish DNA sequence from clone CH211-129C21 in...    46   3.3    1
(AL935286) Zebrafish DNA sequence from clone CH211-198E14 in...    46   3.3    1
(AL592214) Mouse DNA sequence from clone RP23-212I24 on chro...    46   3.3    1
(AM442652) Vitis vinifera contig VV78X236088.4, whole genome...    46   3.3    1
(CR933339) Paramecium tetraurelia, Small GTPase rab, putativ...    46   3.3    1
(AL161630) Human DNA sequence from clone RP11-500B12 on chro...    46   3.3    1
(AC150866) Bos taurus clone CH240-290G4, WORKING DRAFT SEQUE...    46   3.3    1
(AC129645) Rattus norvegicus clone CH230-24G10, *** SEQUENCI...    46   3.3    1
(AC105367) Sus scrofa clone RP44-123J14, WORKING DRAFT SEQUE...    46   3.3    1
(CU914320) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   3.3    1
(CU466346) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   3.3    1
(CR450694) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   3.3    1
(AC188911) Aotus nancymaae clone CH258-406A2, WORKING DRAFT ...    46   3.3    1
(AC183459) Atelerix albiventris clone LB4-439D9, WORKING DRA...    46   3.3    1
(AC171755) Atelerix albiventris clone LB4-201L15, WORKING DR...    46   3.3    1
(CT417489) Sus scrofa genomic clone CH242-433K16, genomic su...    46   3.3    1
(BX192841) Danio rerio genomic clone DKEY-199L17, genomic su...    46   3.3    1
(EG550365) MM05N06_XP Sugar Beet germination cDNA library Be...    46   3.3    1
(CT660853) Danio rerio EST, clone ZF_mu_138g22 3'.                 46   3.3    1
(FK912421) EST_lsal_evj_933260 lsalevj mixed_tissue_mixed_st...    46   3.3    1
(AE016877) Bacillus cereus ATCC 14579, complete genome.            46   3.3    1
(AL354852) Human DNA sequence from clone RP11-115N13 on chro...    42   3.4    3
(EI475400) PV_GBa0085K19.f PV_GBa Phaseolus vulgaris genomic...    38   3.4    2
(AC094601) Rattus norvegicus clone CH230-3G3, WORKING DRAFT ...    36   3.6    5
(AC203539) Glycine tomentella clone gtd1-128d9, WORKING DRAF...    38   4.6    3
(CR387923) Zebrafish DNA sequence from clone CH211-284A17 in...    36   5.7    3
(AL163213) Homo sapiens chromosome 21 segment HS21C013.            32   5.9    2
(AC120808) Rattus norvegicus clone CH230-95C3, *** SEQUENCIN...    32   6.0    2
(AC099422) Rattus norvegicus clone CH230-72M19, WORKING DRAF...    32   6.0    2
(BS000031) Pan troglodytes chromosome 22 clone:PTB-082B23, m...    32   6.1    2
(AF212831) Homo sapiens chromosome 21 clone BAC R-45M19 map ...    32   6.2    2
(AF130359) Homo sapiens chromosome 21 clone PAC K15697 map 2...    32   6.2    2
(AC018361) Homo sapiens 3 BAC RP11-41O13 (Roswell Park Cance...    36   6.3    5
(EY761128) CR05-C1-100-036-D01-CT.F Mandarin leaf, greenhous...    32   7.0    3

>(AC115599) Dictyostelium discoideum chromosome 2 map 4229098-4354721
             strain AX4, complete sequence.
          Length = 125623

 Score =  910 bits (459), Expect(3) = 0.0
 Identities = 463/465 (99%)
 Strand = Plus / Plus


Query: 835   taggatttgaagaagcaatgatactaacaagacatatgatggatataagttttaaaaatc 894
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47407 taggatttgaagaagcaatgatactaacaagacatatgatggatataagttttaaaaatc 47466


Query: 895   taccagattttaaagattacgaaagaataccaacatttatacccagaaatccaaaacctg 954
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47467 taccagattttaaagattacgaaagaataccaacatttatacccagaaatccaaaacctg 47526


Query: 955   taccacaatattatccacaatcaactttaccattatttgaatcaccaaacgtttttgaga 1014
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47527 taccacaatattatccacaatcaactttaccattatttgaatcaccaaacgtttttgaga 47586


Query: 1015  aatttgatatcgataccttgtttttcattttctatttcaaacaaggaacttatcancaat 1074
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 47587 aatttgatatcgataccttgtttttcattttctatttcaaacaaggaacttatcaacaat 47646


Query: 1075  atcaagcagctaaagaattaaagaaacaaggttggagatatcataaaaaatatctcacct 1134
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47647 atcaagcagctaaagaattaaagaaacaaggttggagatatcataaaaaatatctcacct 47706


Query: 1135  ggtttagaagacatgaagaaccaaaagaaatcacaaatgaattcgaacaaggtacctatg 1194
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47707 ggtttagaagacatgaagaaccaaaagaaatcacaaatgaattcgaacaaggtacctatg 47766


Query: 1195  tttattttgattatgaaactggttggtgtcaaagaaagaaaacagagttcacttttgaat 1254
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47767 tttattttgattatgaaactggttggtgtcaaagaaagaaaacagagttcacttttgaat 47826


Query: 1255  atagatttttagaagagtaaataaataaataatttaantaaaaac 1299
             ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 47827 atagatttttagaagagtaaataaataaataatttaattaaaaac 47871

 Score =  224 bits (113), Expect(3) = 0.0
 Identities = 115/116 (99%)
 Strand = Plus / Plus


Query: 269   gccacaagcagatttggatgatagtaaaaataatgaaacctttgataactcctcaaatct 328
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46841 gccacaagcagatttggatgatagtaaaaataatgaaacctttgataactcctcaaatct 46900


Query: 329   ttatncaggtactttagcagaaatatcgacaatatctagaatcaatgatggaactt 384
             |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46901 ttatccaggtactttagcagaaatatcgacaatatctagaatcaatgatggaactt 46956

 Score =  105 bits (53), Expect(3) = 0.0
 Identities = 53/53 (100%)
 Strand = Plus / Plus


Query: 125   gggacaatcagatattaatgatgttcaagattcattatcacaacttaatatta 177
             |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46697 gggacaatcagatattaatgatgttcaagattcattatcacaacttaatatta 46749

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 873,950,001
Number of extensions: 65293438
Number of successful extensions: 8472636
Number of sequences better than 10.0: 120
Length of query: 1299
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1275
Effective length of database: 97,308,875,965
Effective search space: 124068816855375
Effective search space used: 124068816855375
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

Query= Contig-U13852-1 (Contig-U13852-1Q) /CSM_Contig/Contig-U13852-1Q.Seq.d
         (1299 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115599_19(AC115599|pid:none) Dictyostelium discoideum chromoso...   318   4e-85
CR382131_272(CR382131|pid:none) Yarrowia lipolytica strain CLIB1...   172   3e-41
(O13870) RecName: Full=General negative regulator of transcripti...   170   9e-41
AM470429_4(AM470429|pid:none) Vitis vinifera contig VV78X191569....   170   1e-40
(Q8K0V4) RecName: Full=CCR4-NOT transcription complex subunit 3;...   162   2e-38
BC166211_1(BC166211|pid:none) Xenopus tropicalis hypothetical pr...   162   3e-38
(O75175) RecName: Full=CCR4-NOT transcription complex subunit 3;...   161   4e-38
AB014591_1(AB014591|pid:none) Homo sapiens mRNA for KIAA0691 pro...   161   4e-38
AC167711_23(AC167711|pid:none) Medicago truncatula chromosome 7 ...   160   7e-38
AB012246_18(AB012246|pid:none) Arabidopsis thaliana genomic DNA,...   159   2e-37
BC077869_1(BC077869|pid:none) Xenopus laevis MGC80612 protein, m...   158   4e-37
AE013599_79(AE013599|pid:none) Drosophila melanogaster chromosom...   158   5e-37
AK222056_1(AK222056|pid:none) Arabidopsis thaliana mRNA for hypo...   157   6e-37
AM920435_479(AM920435|pid:none) Penicillium chrysogenum Wisconsi...   156   1e-36
BT036315_1(BT036315|pid:none) Zea mays full-length cDNA clone ZM...   155   3e-36
BX950195_3(BX950195|pid:none) Zebrafish DNA sequence from clone ...   154   7e-36
CU633455_102(CU633455|pid:none) Podospora anserina genomic DNA c...   153   1e-35
BC081678_1(BC081678|pid:none) Danio rerio zgc:92813, mRNA (cDNA ...   152   2e-35
AC138001_12(AC138001|pid:none) Oryza sativa chromosome 3 BAC OSJ...   152   3e-35
T19385(T19385) hypothetical protein C18D11.5 - Caenorhabditis el...   139   3e-31
CU151838_1(CU151838|pid:none) Human DNA sequence from clone XXba...   132   3e-29
AC105379_34(AC105379|pid:none) Trypanosoma brucei chromosome 3 c...   129   3e-28
CT005264_191(CT005264|pid:none) Leishmania major strain Friedlin...   124   1e-26
CR940352_65(CR940352|pid:none) Theileria annulata strain Ankara ...    99   3e-19
AC138001_17(AC138001|pid:none) Oryza sativa chromosome 3 BAC OSJ...    99   3e-19
CR954216_124(CR954216|pid:none) Ostreococcus tauri strain OTTH05...    92   4e-17
CU151838_2(CU151838|pid:none) Human DNA sequence from clone XXba...    89   3e-16
CP000496_906(CP000496|pid:none) Pichia stipitis CBS 6054 chromos...    84   1e-14
CP000595_95(CP000595|pid:none) Ostreococcus lucimarinus CCE9901 ...    82   4e-14
AL033501_7(AL033501|pid:none) C.albicans cosmid Ca41C10.  &T1823...    77   2e-12
BX950195_2(BX950195|pid:none) Zebrafish DNA sequence from clone ...    75   7e-12
CU928170_498(CU928170|pid:none) Kluyveromyces thermotolerans str...    71   7e-11
AY391415_1(AY391415|pid:none) Danio rerio CCR4-NOT transcription...    69   3e-10
CR380950_54(CR380950|pid:none) Candida glabrata strain CBS138 ch...    69   3e-10
AE016817_37(AE016817|pid:none) Ashbya gossypii (= Eremothecium g...    68   6e-10
CP000586_26(CP000586|pid:none) Ostreococcus lucimarinus CCE9901 ...    66   3e-09
(Q12514) RecName: Full=General negative regulator of transcripti...    65   4e-09
CR954206_36(CR954206|pid:none) Ostreococcus tauri strain OTTH059...    65   7e-09
AC144343_13(AC144343|pid:none) Medicago truncatula clone mth2-12...    65   7e-09
AF295433_1(AF295433|pid:none) Arabidopsis thaliana VIP2 protein ...    62   5e-08
(Q8C5L3) RecName: Full=CCR4-NOT transcription complex subunit 2;...    62   6e-08
BC148912_1(BC148912|pid:none) Bos taurus CCR4-NOT transcription ...    62   6e-08
(Q9NZN8) RecName: Full=CCR4-NOT transcription complex subunit 2;...    62   6e-08
AF113226_1(AF113226|pid:none) Homo sapiens MSTP046 mRNA, complet...    62   6e-08
BC155433_1(BC155433|pid:none) Xenopus tropicalis hypothetical pr...    62   6e-08
AK011231_1(AK011231|pid:none) Mus musculus 10 days embryo whole ...    62   6e-08
CR382139_323(CR382139|pid:none) Debaryomyces hansenii strain CBS...    61   1e-07
CR382128_923(CR382128|pid:none) Yarrowia lipolytica strain CLIB1...    61   1e-07
FM992688_26(FM992688|pid:none) Candida dubliniensis CD36 chromos...    60   2e-07
AP008209_2548(AP008209|pid:none) Oryza sativa (japonica cultivar...    59   4e-07
AM424065_1(AM424065|pid:none) Vitis vinifera contig VV78X125552....    59   5e-07
(P87240) RecName: Full=General negative regulator of transcripti...    56   3e-06
CR380955_134(CR380955|pid:none) Candida glabrata strain CBS138 c...    55   7e-06
(P06100) RecName: Full=General negative regulator of transcripti...    54   2e-05
AK300434_1(AK300434|pid:none) Homo sapiens cDNA FLJ61662 complet...    53   3e-05
AL133647_1(AL133647|pid:none) Homo sapiens mRNA; cDNA DKFZp434L0...    53   3e-05
AE016816_55(AE016816|pid:none) Ashbya gossypii (= Eremothecium g...    52   5e-05
FN392322_970(FN392322|pid:none) Pichia pastoris GS115 chromosome...    52   6e-05
AB049862_1(AB049862|pid:none) Macaca fascicularis brain cDNA, cl...    50   1e-04
(Q94547) RecName: Full=Regulator of gene activity;          Shor...    50   2e-04
U75467_2(U75467|pid:none) Drosophila melanogaster Rga and Atu ge...    50   2e-04
U39848_8(U39848|pid:none) Caenorhabditis elegans cosmid B0286, c...    50   2e-04
U39848_6(U39848|pid:none) Caenorhabditis elegans cosmid B0286, c...    50   2e-04
U39848_7(U39848|pid:none) Caenorhabditis elegans cosmid B0286, c...    50   2e-04
CR382124_517(CR382124|pid:none) Kluyveromyces lactis strain NRRL...    50   2e-04
AE017343_340(AE017343|pid:none) Cryptococcus neoformans var. neo...    49   3e-04
BT031091_1(BT031091|pid:none) Drosophila melanogaster AT24562 fu...    48   7e-04
AC073906_4(AC073906|pid:none) Trypanosoma brucei chromosome 6 cl...    45   0.007
AM270003_37(AM270003|pid:none) Aspergillus niger contig An02c008...    45   0.007
AP007159_471(AP007159|pid:none) Aspergillus oryzae RIB40 genomic...    44   0.013
U41993_7(U41993|pid:none) Caenorhabditis elegans cosmid F44A2, c...    44   0.017
BX538351_61(BX538351|pid:none) Cryptosporidium parvum chromosome...    44   0.017
AM910991_265(AM910991|pid:none) Plasmodium knowlesi strain H chr...    44   0.017
X04289_1(X04289|pid:none) Yeast cell division control gene CDC39.      42   0.063
CR382125_185(CR382125|pid:none) Kluyveromyces lactis strain NRRL...    41   0.083
AY692897_1(AY692897|pid:none) Saccharomyces cerevisiae clone FLH...    41   0.11
AC104489_4(AC104489|pid:none) Trypanosoma cruzi strain CL Brener...    40   0.14
AM502230_30(AM502230|pid:none) Leishmania infantum chromosome 12.      40   0.14
CU928165_144(CU928165|pid:none) Kluyveromyces thermotolerans str...    39   0.41
DQ976898_5(DQ976898|pid:none) Macaca mulatta CNOT2 (CNOT2) gene,...    39   0.41
AF161480_1(AF161480|pid:none) Homo sapiens HSPC131 mRNA, complet...    38   0.70
CU928176_697(CU928176|pid:none) Zygosaccharomyces rouxii strain ...    37   1.2
AY387483_20(AY387483|pid:none) Oryza sativa (japonica cultivar-g...    37   1.6
CU207366_647(CU207366|pid:none) Gramella forsetii KT0803 complet...    37   1.6
CP001393_833(CP001393|pid:none) Anaerocellum thermophilum DSM 67...    35   4.5
AJ870418_1(AJ870418|pid:none) Streptococcus pneumoniae lytB gene...    35   4.5
CP000685_3429(CP000685|pid:none) Flavobacterium johnsoniae UW101...    35   4.5
T18376(T18376) multidrug resistance protein 2 - malaria parasite...    35   4.6
AE014187_453(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    35   4.6
AL929357_69(AL929357|pid:none) Plasmodium falciparum strain 3D7,...    35   4.6
AL844508_227(AL844508|pid:none) Plasmodium falciparum 3D7 chromo...    35   4.6
AY296748_1(AY296748|pid:none) Plasmodium falciparum isolate FCR3...    35   4.6
AF409138_128(AF409138|pid:none) Lumpy skin disease virus isolate...    35   6.0
AJ870421_1(AJ870421|pid:none) Streptococcus pneumoniae lytB gene...    35   7.8
(A8MFD2) RecName: Full=tRNA delta(2)-isopentenylpyrophosphate tr...    35   7.8

>AC115599_19(AC115599|pid:none) Dictyostelium discoideum chromosome 2
            map 4229098-4354721 strain AX4, complete sequence.
          Length = 1015

 Score =  318 bits (814), Expect = 4e-85
 Identities = 146/148 (98%), Positives = 147/148 (99%)
 Frame = +3

Query: 828  GQLGFEEAMILTRHMMDISFKNLPDFKDYERIPTFIPRNPKPVPQYYPQSTLPLFESPNV 1007
            GQLGFEEAMILTRHMMDISFKNLPDFKDYERIPTFIPRNPKPVPQYYPQSTLPLFESPNV
Sbjct: 708  GQLGFEEAMILTRHMMDISFKNLPDFKDYERIPTFIPRNPKPVPQYYPQSTLPLFESPNV 767

Query: 1008 FEKFDIDTLFFIFYFKQGTYXQYQAAKELKKQGWRYHKKYLTWFRRHEEPKEITNEFEQG 1187
            FEKFDIDTLFFIFYFKQGTY QYQAAKELKKQGWRYHKKYLTWFRRHEEPKEITNEFEQG
Sbjct: 768  FEKFDIDTLFFIFYFKQGTYQQYQAAKELKKQGWRYHKKYLTWFRRHEEPKEITNEFEQG 827

Query: 1188 TYVYFDYETGWCQRKKTEFTFEYRFLEE 1271
            TYVYFDYETGWCQRKKTEFTFEYRFLE+
Sbjct: 828  TYVYFDYETGWCQRKKTEFTFEYRFLED 855

 Score =  110 bits (276), Expect = 9e-23
 Identities = 61/94 (64%), Positives = 61/94 (64%)
 Frame = +3

Query: 105 TQFKNKTGQSDINDVQDSLSQLNIKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADL 284
           TQFKNKTGQSDINDVQDSLSQLNIK                                ADL
Sbjct: 467 TQFKNKTGQSDINDVQDSLSQLNIKQQQQPPQQPQQQQQQQQQQQQQQQQQQQQQPQADL 526

Query: 285 DDSKNNETFDNSSNLYXGTLAEISTISRINDGTY 386
           DDSKNNETFDNSSNLY GTLAEISTISRINDGTY
Sbjct: 527 DDSKNNETFDNSSNLYPGTLAEISTISRINDGTY 560

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 979,097,192
Number of extensions: 16204446
Number of successful extensions: 49505
Number of sequences better than 10.0: 95
Number of HSP's gapped: 49399
Number of HSP's successfully gapped: 96
Length of query: 433
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 302
Effective length of database: 627,191,635
Effective search space: 189411873770
Effective search space used: 189411873770
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

 psg: 0.61  gvh: 0.19  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for Contig-U13852-1 is nuc