>Contig-U02319-1 (Contig-U02319-1Q) /CSM_Contig/Contig-U02319-1Q.Seq.d
AANAAATAATTTTTNAAAGATGNTNATAATAATNATAANAATAAAAATAA
TAANAATAATAATAATAATAATAATAATAAANCCAANGNTCCCTTTTTTT
TATTTTTTTTTTAATNTTCTCANTTTCNTTTTTTTTTCTCTCAAAATAAT
AATAATAATAATTATAATTATTTAAAAAATAAAAATAAATTATATAGT

est1=VSK301Z,1,199

XNNFXKMXIIXIXIKIIXIIIIIIIIXPXXPFFYFFFNXLXFXFFSLKIIIIIIIII*ki
kinyi

Frame A:
xk*fxkdxxnnxxnknnxnnnnnnnnkxxxpfflfff*xsxfxfffsqnnnnnnynylkn
knklys


Frame B:
XNNFXKMXIIXIXIKIIXIIIIIIIIXPXXPFFYFFFNXLXFXFFSLKIIIIIIIII*ki
kinyi


Frame C:
xiifxrxx**x*x*k**x********xqxslffifflxfsxsffflsk*****l*lfkk*
k*ii*

Query= Contig-U02319-1 (Contig-U02319-1Q)
/CSM_Contig/Contig-U02319-1Q.Seq.d
         (198 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U02319-1 (Contig-U02319-1Q) /CSM_Contig/Conti...    32  0.21
Contig-U11735-1 (Contig-U11735-1Q) /CSM_Contig/Conti...    30  0.81

>Contig-U02319-1 (Contig-U02319-1Q) /CSM_Contig/Contig-U02319-1Q.Seq.d
          Length = 198

 Score = 32.2 bits (16), Expect = 0.21
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 4  aaataatttttnaaagatg 22
          |||||||||||||||||||
Sbjct: 4  aaataatttttnaaagatg 22


>Contig-U11735-1 (Contig-U11735-1Q) /CSM_Contig/Contig-U11735-1Q.Seq.d
          Length = 1850

 Score = 30.2 bits (15), Expect = 0.81
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                             
Query: 4   aaataatttttnaaagat 21
           ||||||||||| ||||||
Sbjct: 931 aaataatttttcaaagat 948


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 311
Number of Sequences: 6905
Number of extensions: 311
Number of successful extensions: 41
Number of sequences better than 10.0: 2
length of query: 198
length of database: 5,674,871
effective HSP length: 15
effective length of query: 183
effective length of database: 5,571,296
effective search space: 1019547168
effective search space used: 1019547168
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)

Query= Contig-U02319-1 (Contig-U02319-1Q) /CSM_Contig/Contig-U02319-1Q.Seq.d
         (198 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 0
Number of sequences better than 10.0: 0
Length of query: 198
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 175
Effective length of database: 99,442,330,388
Effective search space: 17402407817900
Effective search space used: 17402407817900
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

Query= Contig-U02319-1 (Contig-U02319-1Q) /CSM_Contig/Contig-U02319-1Q.Seq.d
         (198 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 45,681,314
Number of extensions: 197344
Number of successful extensions: 464
Number of sequences better than 10.0: 0
Number of HSP's gapped: 462
Number of HSP's successfully gapped: 0
Length of query: 66
Length of database: 1,051,180,864
Length adjustment: 38
Effective length of query: 28
Effective length of database: 928,191,622
Effective search space: 25989365416
Effective search space used: 25989365416
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 26 (14.6 bits)

 psg: 0.92  gvh: 0.46  alm: 0.11  top: 0.40  tms: 0.13  mit: 0.40  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: mitochondrial
	 24.0 %: plasma membrane
	 24.0 %: endoplasmic reticulum
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: nuclear
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U02319-1 is mit