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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U13840-1
Contig ID Contig-U13840-1
Contig update 2002.12.18
Contig sequence 
>Contig-U13840-1 (Contig-U13840-1Q) /CSM_Contig/Contig-U13840-1Q.Seq.d
ACTGTTGGCCTACTGGTAAATATCATAAAACCCAAATATTAAAATGAGCG
ATATTCAATACTCAAAATACGTTTCAAATCAATATGGTTTTGAACTTGAA
TATCCATCAAATTGGATAGTAAAGGAACATTCAGCAATGTTTTTAGCATC
TTTCATGGAATCAAACGATAAAAACTCACCAAGTCTTAATGTTACAATTC
AAAATTTAGAAGGATCAACTGGATCAGATCAATCTATGACACCAAAACAA
TTATTAGATATTTCAATTCAACAAATTCAACAAATTAATGCAACCCATAT
TGAAACAGGTTCATGTAAAATCGGTTCAAACAGTGCAGACTTTTTATCAT
ATTATGCACCAGAACAAAAAGTAAGAAATAAACAATGTTTCTTCATAAAG
AATAACAATGTATTCATCATTTCATATACCTCATCAAATGGTGAATTCAC
AAAGAATTTACCAGCATTGGAACATTGTTGTAAAACCTTTAAGAATTTCG
AAGCAAAAGGATTTAAATACACTCAAATGGAAGCATTCACATCAAGTATT
AAAAGCTCATCATCAGCAGCAACCTATTATTACCAATATTGGGTACCAAA
GACATGGAAATCAAAAAAAGAATCTAAACATCAAGAATATACAGACTCTT
CAAATAACTTATCATTAGTTGTTGAAGTTCAAAATAAAACCAATACTCCT
CAAGTTAAAGAAACTAAAAAAATCAACTACCATCACTAATAATAAACATC
ATTTCCACTACGGATGTAACCATTGAAGATATTCATCTCTCATTGGTCTT
TACATGTTTAGAGAATGAATCAAACTGCTTGGGAACCACTATTCGAACGT
TTTATAGCCGATTTAAAGATTGGCACATCATTTTTAGAATCACCAGTTTA
CAATCGTTTCTATAATTTCATCTTCAAATTCTACGTTCACATTCCAAAAT
CATTCGCAATGGACCCAAGATCATCCAATTTCACCTCTTTAATTTTCCTC
GATCAAGATTATCCAATGTATCCAATATTTAATATCACATTGGAGGACTT
GGGTGCTCCAATCAAATTGGAGCAATATAAAGATCTCCTCTTGTCTTTCT
ATGAAAACTCTGTCGAAAATGCACGTATCATCTCTCAAGATCCTGCTCGT
ATCGATAATTATCGTGCTCTTCGTATCAATATGGATGGTCGTGATCCTGA
AATCGATAAAGATTGTAAAGTCATCATTCAATGTGCTGTCGTTCAACGTA
CAAAAGGTTTATTATTAAATCTTCGTCTTCCAAAAAATATTTTCGACACT
GCTTATAAAAAATACTTTTATATATTCCCAAGTTTAGTATTTTATAATTA
AAAATAAAATAAAAATAAAATAAAAATAAAAATAAAAAATAATCATTTAA
AATAATAATTATAATAATA
Gap no gap
Contig length 1419
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 2384798
End point 2383396
Strand (PLUS/MINUS) MINUS
Number of clones 13
Number of EST 23
Link to clone list U13840
List of clone(s) 

est1=AFA380F,1,584
est2=AFO550F,1,649
est3=VFD694F,4,218
est4=VFM127F,7,491
est5=VFK321F,8,609
est6=VFI524F,12,624
est7=SFH626F,14,181
est8=VFA865F,15,663
est9=VFB458F,18,576
est10=CHC532F,25,635
est11=VFD288E,25,1335
est12=VFK269F,25,651
est13=VFM127Z,608,1333
est14=VFA865Z,631,1332
est15=VFB458Z,658,1332
est16=VFI524Z,677,1400
est17=AFO550Z,701,1420
est18=VFK269Z,703,1374
est19=VFK321Z,707,1380
est20=VSD889Z,710,1400
est21=AFA380Z,799,1338
est22=CHC532Z,912,1351
est23=SFH626Z,1159,1317
Translated Amino Acid sequence 
llayw*is*NPNIKMSDIQYSKYVSNQYGFELEYPSNWIVKEHSAMFLASFMESNDKNSP
SLNVTIQNLEGSTGSDQSMTPKQLLDISIQQIQQINATHIETGSCKIGSNSADFLSYYAP
EQKVRNKQCFFIKNNNVFIISYTSSNGEFTKNLPALEHCCKTFKNFEAKGFKYTQMEAFT
SSIKSSSSAATYYYQYWVPKTWKSKKESKHQEYTDSSNNLSLVVEVQNKTNTPQVKETKK
INYHH***tsfplrm*plkifishwslhv*rmnqtaweplferfiadlkigtsflespvy
nrfynfifkfyvhipksfamdprssnftslifldqdypmypifnitledlgapikleqyk
dlllsfyensvenariisqdparidnyralrinmdgrdpeidkdckviiqcavvqrtkgl
llnlrlpknifdtaykkyfyifpslvfyn*k*nknkikikiknnhlk**l**
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllvniikpky*nerysilkirfksiwf*t*isikldskgtfsnvfsifhgikr*klt
ks*cynskfrrinwirsiydtktiiryfnstnstn*cnpy*nrfm*nrfkqcrlfiilct
rtkskk*tmflhke*qcihhfiylikw*ihkeftsigtll*nl*efrskri*ihsngsih
iky*kliissnlllpilgtkdmeikkri*tsriyrlfk*liisc*ssk*nqysss*rn*k
nqlpsliiniisttdvtiedihlslvftclenesnclgttirtfysrfkdwhiifritsl
qsfl*fhlqilrshskiirngpkiiqfhlfnfprsrlsnvsni*yhigglgcsnqigai*
rsplvfl*klcrkctyhlsrscsyr*lscssyqygws*s*nr*rl*shhsmccrstykrf
iiksssskkyfrhcl*killyipkfsil*lkik*k*nknknkk*sfkiiiiii


Frame B:
llayw*is*NPNIKMSDIQYSKYVSNQYGFELEYPSNWIVKEHSAMFLASFMESNDKNSP
SLNVTIQNLEGSTGSDQSMTPKQLLDISIQQIQQINATHIETGSCKIGSNSADFLSYYAP
EQKVRNKQCFFIKNNNVFIISYTSSNGEFTKNLPALEHCCKTFKNFEAKGFKYTQMEAFT
SSIKSSSSAATYYYQYWVPKTWKSKKESKHQEYTDSSNNLSLVVEVQNKTNTPQVKETKK
INYHH***tsfplrm*plkifishwslhv*rmnqtaweplferfiadlkigtsflespvy
nrfynfifkfyvhipksfamdprssnftslifldqdypmypifnitledlgapikleqyk
dlllsfyensvenariisqdparidnyralrinmdgrdpeidkdckviiqcavvqrtkgl
llnlrlpknifdtaykkyfyifpslvfyn*k*nknkikikiknnhlk**l**


Frame C:
cwptgkyhktqilk*aifntqntfqinmvlnlnihqig**rniqqcf*hlswnqtikthq
vlmlqfki*kdqldqinl*hqnny*ifqfnkfnklmqpilkqvhvksvqtvqtfyhimhq
nkk*einnvss*ritmyssfhiphqmvnsqriyqhwnivvkplriskqkdlntlkwkhsh
qvlkahhqqqpiitnigyqrhgnqkknlnikniqtlqityh*llkfkikpillklkklkk
sttitnnkhhfhygcnh*ryssliglymfre*ikllgnhysnvl*pi*rlahhf*nhqft
ivsiisssnstftfqnhsqwtqdhpispl*fssikiiqciqylishwrtwvlqsnwsnik
issclsmktlskmhvsslkillvsiiivlfvsiwmvvilksikivkssfnvlsfnvqkvy
y*ifvfqkifstllikntfiysqv*yfiiknkikik*k*k*kiii*nnnynn
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U13840-1 (Contig-U13840-1Q)
/CSM_Contig/Contig-U13840-1Q.Seq.d
         (1419 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13840-1 (Contig-U13840-1Q) /CSM_Contig/Conti...  2589  0.0
Contig-U14746-1 (Contig-U14746-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U14740-1 (Contig-U14740-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U12694-1 (Contig-U12694-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U11510-1 (Contig-U11510-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U10858-1 (Contig-U10858-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U10720-1 (Contig-U10720-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U10384-1 (Contig-U10384-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U13110-1 (Contig-U13110-1Q) /CSM_Contig/Conti...    34  0.40
Contig-U12036-1 (Contig-U12036-1Q) /CSM_Contig/Conti...    34  0.40

>Contig-U13840-1 (Contig-U13840-1Q) /CSM_Contig/Contig-U13840-1Q.Seq.d
          Length = 1419

 Score = 2589 bits (1306), Expect = 0.0
 Identities = 1334/1348 (98%)
 Strand = Plus / Plus

                                                                        
Query: 1    actgttggcctactggtaaatatcataaaacccaaatattaaaatgagcgatattcaata 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    actgttggcctactggtaaatatcataaaacccaaatattaaaatgagcgatattcaata 60

                                                                        
Query: 61   ctcaaaatacgtttcaaatcaatatggttttgaacttgaatatccatcaaattggatagt 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   ctcaaaatacgtttcaaatcaatatggttttgaacttgaatatccatcaaattggatagt 120

                                                                        
Query: 121  aaaggaacattcagcaatgtttttagcatctttcatggaatcaaacgataaaaactcacc 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  aaaggaacattcagcaatgtttttagcatctttcatggaatcaaacgataaaaactcacc 180

                                                                        
Query: 181  aagtcttaatgttacaattcaaaatttagaaggatcaactggatcagatcaatctatgac 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  aagtcttaatgttacaattcaaaatttagaaggatcaactggatcagatcaatctatgac 240

                                                                        
Query: 241  accaaaacaattattagatatttcaattcaacaaattcaacaaattaatgcaacccatat 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  accaaaacaattattagatatttcaattcaacaaattcaacaaattaatgcaacccatat 300

                                                                        
Query: 301  tgaaacaggttcatgtaaaatcggttcaaacagtgcagactttttatcatattatgcacc 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  tgaaacaggttcatgtaaaatcggttcaaacagtgcagactttttatcatattatgcacc 360

                                                                        
Query: 361  agaacaaaaagtaagaaataaacaatgtttcttcataaagaataacaatgtattcatcat 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361  agaacaaaaagtaagaaataaacaatgtttcttcataaagaataacaatgtattcatcat 420

                                                                        
Query: 421  ttcatatacctcatcaaatggtgaattcacaaagaatttaccagcattggaacattgttg 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421  ttcatatacctcatcaaatggtgaattcacaaagaatttaccagcattggaacattgttg 480

                                                                        
Query: 481  taaaacctttaagaatttcgaagcaaaaggatttaaatacactcaaatggaagcattcac 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  taaaacctttaagaatttcgaagcaaaaggatttaaatacactcaaatggaagcattcac 540

                                                                        
Query: 541  atcaagtattaaaagctcatcatcagcagcaacctattattaccaatattgggtaccaaa 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  atcaagtattaaaagctcatcatcagcagcaacctattattaccaatattgggtaccaaa 600

                                                                        
Query: 601  gacatggaaatcnnnnnnngaatctaaacatcaagaatatacagactcttcaaataactt 660
            ||||||||||||       |||||||||||||||||||||||||||||||||||||||||
Sbjct: 601  gacatggaaatcaaaaaaagaatctaaacatcaagaatatacagactcttcaaataactt 660

                                                                        
Query: 661  atcattagttgttgaagttcaaaataaaaccaatactcctcaagttaaagaaactnnnnn 720
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct: 661  atcattagttgttgaagttcaaaataaaaccaatactcctcaagttaaagaaactaaaaa 720

                                                                        
Query: 721  nntcaactaccatcactaataataaacatcatttccactacggatgtaaccattgaagat 780
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721  aatcaactaccatcactaataataaacatcatttccactacggatgtaaccattgaagat 780

                                                                        
Query: 781  attcatctctcattggtctttacatgtttagagaatgaatcaaactgcttgggaaccact 840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781  attcatctctcattggtctttacatgtttagagaatgaatcaaactgcttgggaaccact 840

                                                                        
Query: 841  attcgaacgttttatagccgatttaaagattggcacatcatttttagaatcaccagttta 900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841  attcgaacgttttatagccgatttaaagattggcacatcatttttagaatcaccagttta 900

                                                                        
Query: 901  caatcgtttctataatttcatcttcaaattctacgttcacattccaaaatcattcgcaat 960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901  caatcgtttctataatttcatcttcaaattctacgttcacattccaaaatcattcgcaat 960

                                                                        
Query: 961  ggacccaagatcatccaatttcacctctttaattttcctcgatcaagattatccaatgta 1020
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961  ggacccaagatcatccaatttcacctctttaattttcctcgatcaagattatccaatgta 1020

                                                                        
Query: 1021 tccaatatttaatatcacattggaggacttgggtgctccaatcaaattggagcaatataa 1080
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 tccaatatttaatatcacattggaggacttgggtgctccaatcaaattggagcaatataa 1080

                                                                        
Query: 1081 agatctcctcttgtctttctatgaaaactctgtcgaaaatgcacgtatcatctctcaaga 1140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 agatctcctcttgtctttctatgaaaactctgtcgaaaatgcacgtatcatctctcaaga 1140

                                                                        
Query: 1141 tcctgctcgtatcgataattatcgtgctcttcgtatcaatatggatggtcgtgatcctga 1200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 tcctgctcgtatcgataattatcgtgctcttcgtatcaatatggatggtcgtgatcctga 1200

                                                                        
Query: 1201 aatcgataaagattgtaaagtcatcattcaatgtgctgtcgttcaacgtacaaaaggttt 1260
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 aatcgataaagattgtaaagtcatcattcaatgtgctgtcgttcaacgtacaaaaggttt 1260

                                                                        
Query: 1261 attattaaatcttcgtcttccaaaaaatattttcgacactgcttataaaaaatactttta 1320
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 attattaaatcttcgtcttccaaaaaatattttcgacactgcttataaaaaatactttta 1320

                                        
Query: 1321 tatattcccaagtttagtattttataat 1348
            ||||||||||||||||||||||||||||
Sbjct: 1321 tatattcccaagtttagtattttataat 1348


>Contig-U14746-1 (Contig-U14746-1Q) /CSM_Contig/Contig-U14746-1Q.Seq.d
          Length = 1124

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 1  actgttggcctactggtaaatatcat 26
          ||||||||||||||||||||| ||||
Sbjct: 2  actgttggcctactggtaaatttcat 27


>Contig-U14740-1 (Contig-U14740-1Q) /CSM_Contig/Contig-U14740-1Q.Seq.d
          Length = 1187

 Score = 40.1 bits (20), Expect = 0.006
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  actgttggcctactggtaaa 20
          ||||||||||||||||||||
Sbjct: 1  actgttggcctactggtaaa 20


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,840
Number of Sequences: 6905
Number of extensions: 17840
Number of successful extensions: 2187
Number of sequences better than 10.0: 597
length of query: 1419
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1403
effective length of database: 5,564,391
effective search space: 7806840573
effective search space used: 7806840573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.14
Homology vs DNA 
Query= Contig-U13840-1 (Contig-U13840-1Q) /CSM_Contig/Contig-U13840-1Q.Seq.d
         (1419 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ410964) Dictyostelium discoideum cDNA clone:ddv2b18, 5' e...  1174   0.0    2
(BJ414143) Dictyostelium discoideum cDNA clone:ddv18o05, 5' ...  1172   0.0    1
(BJ329029) Dictyostelium discoideum cDNA clone:dda30c13, 5' ...  1172   0.0    3
(BJ415153) Dictyostelium discoideum cDNA clone:ddv21i18, 5' ...  1166   0.0    2
(BJ412332) Dictyostelium discoideum cDNA clone:ddv7o22, 5' e...  1166   0.0    2
(BJ363592) Dictyostelium discoideum cDNA clone:ddc27o07, 5' ...  1166   0.0    2
(BJ415003) Dictyostelium discoideum cDNA clone:ddv21j05, 5' ...  1160   0.0    2
(BJ325681) Dictyostelium discoideum cDNA clone:dda1p19, 5' e...  1102   0.0    2
(BJ411233) Dictyostelium discoideum cDNA clone:ddv3d16, 5' e...  1078   0.0    1
(AU264705) Dictyostelium discoideum vegetative cDNA clone:VS...   942   0.0    3
(BJ434888) Dictyostelium discoideum cDNA clone:ddv25e07, 3' ...   942   0.0    4
(BJ433368) Dictyostelium discoideum cDNA clone:ddv21i18, 3' ...   942   0.0    3
(BJ433219) Dictyostelium discoideum cDNA clone:ddv21j05, 3' ...   942   0.0    3
(BJ430610) Dictyostelium discoideum cDNA clone:ddv7o22, 3' e...   942   0.0    5
(BJ429453) Dictyostelium discoideum cDNA clone:ddv3d16, 3' e...   942   0.0    4
(BJ429147) Dictyostelium discoideum cDNA clone:ddv2b18, 3' e...   942   0.0    4
(BJ346302) Dictyostelium discoideum cDNA clone:dda30c13, 3' ...   942   0.0    3
(BJ432271) Dictyostelium discoideum cDNA clone:ddv18o05, 3' ...   934   0.0    4
(BJ343075) Dictyostelium discoideum cDNA clone:dda1p19, 3' e...   930   0.0    2
(BJ416200) Dictyostelium discoideum cDNA clone:ddv25e07, 5' ...   829   0.0    1
(BJ378141) Dictyostelium discoideum cDNA clone:ddc27o07, 3' ...   670   0.0    1
(BJ412520) Dictyostelium discoideum cDNA clone:ddv8k24, 5' e...   379   e-100  2
(BJ388792) Dictyostelium discoideum cDNA clone:dds16c08, 5' ...   180   4e-75  2
(BJ402313) Dictyostelium discoideum cDNA clone:dds16c08, 3' ...   135   5e-39  2
(CJ448066) Macaca fascicularis mRNA, clone: QflA-13425, 5' e...    44   0.006  2
(AC128846) Rattus norvegicus clone CH230-500I12, WORKING DRA...    50   0.23   2
(AC137429) Rattus norvegicus clone CH230-unknown, *** SEQUEN...    50   0.23   1
(AR546053) Sequence 1184 from patent US 6747137.                   48   0.92   1
(CU029828) Equus caballus GSS, BAC clone CH241-125E10, SP6 e...    48   0.92   1
(CJ463979) Macaca fascicularis mRNA, clone: QnpA-12579, 5' e...    48   0.92   1
(CI023660) Oryza sativa Japonica Group cDNA, clone: 008-M001...    48   0.92   1
(BJ387896) Dictyostelium discoideum cDNA clone:dds5n15, 5' e...    38   1.3    3
(AM431067) Vitis vinifera contig VV78X121875.7, whole genome...    38   2.1    2
(AL844206) Mouse DNA sequence from clone RP23-84A23 on chrom...    40   2.3    2
(CJ481737) Macaca fascicularis mRNA, clone: QtrA-17463, 5' e...    38   2.5    3
(BU715947) SJM2AJC04 SJM Schistosoma japonicum cDNA, mRNA se...    30   2.6    4
(CZ064746) OM__Ba0063C14.r OM__Ba Oryza minuta genomic clone...    38   2.7    2
(CZ184704) OA_BBa0099P02.r OA_BBa Oryza alta genomic clone O...    38   2.9    2
(DU149016) OG_ABa0011B01.f OG_ABa Oryza granulata genomic cl...    38   3.2    2
(DU609084) OO__Ba0108N21.f OO__Ba Oryza officinalis genomic ...    38   3.3    2
(AC146616) Mus musculus BAC clone RP23-9A18 from 7, complete...    46   3.6    1
(AC128661) Mus musculus BAC clone RP24-567N23 from chromosom...    46   3.6    1
(AC141749) Apis mellifera clone CH224-59E23, WORKING DRAFT S...    46   3.6    1
(AC222219) Bos taurus clone CH240-412G13, WORKING DRAFT SEQU...    46   3.6    1
(ER415749) 1092452147568 Global-Ocean-Sampling_GS-35-01-01-1...    46   3.6    1
(CO902554) Mdfrt3058e20.y1 Mdfrt Malus x domestica cDNA clon...    46   3.6    1
(CO898692) Mdfrt3054k08.y1 Mdfrt Malus x domestica cDNA clon...    46   3.6    1
(CJ465300) Macaca fascicularis mRNA, clone: QnpA-14368, 5' e...    46   3.6    1
(CJ464106) Macaca fascicularis mRNA, clone: QnpA-12733, 5' e...    46   3.6    1
(CJ462024) Macaca fascicularis mRNA, clone: QmoA-15057, 5' e...    46   3.6    1
(CJ448864) Macaca fascicularis mRNA, clone: QflA-14255, 5' e...    46   3.6    1
(CI260478) Oryza sativa Japonica Group cDNA, clone: 046-M002...    46   3.6    1
(CI208714) Oryza sativa Japonica Group cDNA, clone: 038-M030...    46   3.6    1
(CI030202) Oryza sativa Japonica Group cDNA, clone: 009-M073...    46   3.6    1
(BJ337028) Dictyostelium discoideum cDNA clone:dda56b06, 5' ...    46   3.6    1
(BG226866) kp94h06.y1 TBN95TM-SSR Strongyloides stercoralis ...    46   3.6    1
(BF015248) kq61d02.y1 TBN95TM-SSR Strongyloides stercoralis ...    46   3.6    1
(BE581924) kq56d12.y1 TBN95TM-SSR Strongyloides stercoralis ...    46   3.6    1
(BE580349) kq40c08.y1 TBN95TM-SSR Strongyloides stercoralis ...    46   3.6    1
(FC820470) Sr_pAMT7_017m15_T7 S. ratti mixed stage pAMP Stro...    46   3.6    1
(DQ493594) Mycoplasma alligatoris strain A21JP2 beta-galacto...    46   3.6    1
(DU544587) OO__Ba0018L13.f OO__Ba Oryza officinalis genomic ...    38   3.6    2
(CZ605635) OM__Ba0130D15.f OM__Ba Oryza minuta genomic clone...    38   3.7    2
(DU613632) OO__Ba0115A14.r OO__Ba Oryza officinalis genomic ...    38   3.9    2
(CZ641118) OM__Ba0186J23.f OM__Ba Oryza minuta genomic clone...    38   3.9    2
(CJ485689) Macaca fascicularis mRNA, clone: QtsA-13282, 5' e...    40   4.0    2
(DU544552) OO__Ba0018K18.r OO__Ba Oryza officinalis genomic ...    38   4.1    2
(CJ466798) Macaca fascicularis mRNA, clone: QnpA-16204, 5' e...    42   4.1    2
(DU609955) OO__Ba0110A09.f OO__Ba Oryza officinalis genomic ...    38   4.2    2
(AZ528750) ENTCQ35TF Entamoeba histolytica Sheared DNA Entam...    44   4.3    2
(AZ166366) SP_0088_A1_D01_T7A Strongylocentrotus purpuratus,...    32   4.3    3
(EK097570) 1092962047592 Global-Ocean-Sampling_GS-31-01-01-1...    42   4.4    2
(CZ027959) OM__Ba0002A07.f OM__Ba Oryza minuta genomic clone...    38   4.4    2
(CZ601506) OM__Ba0123A22.f OM__Ba Oryza minuta genomic clone...    32   5.6    3
(AR347477) Sequence 2088 from patent US 6583275.                   36   5.7    3
(BJ392469) Dictyostelium discoideum cDNA clone:dds27c23, 5' ...    36   6.1    3
(EG663678) RCLGD46TP Castor bean cDNA library from leaves, 1...    34   8.2    3
(EG665631) RCLGX93TP Castor bean cDNA library from leaves, 1...    34   9.0    3
(EG691414) RCSAI04TP Castor bean cDNA library from seeds (12...    34   9.3    3

>(BJ410964) Dictyostelium discoideum cDNA clone:ddv2b18, 5' end,
           single read.
          Length = 649

 Score = 1174 bits (592), Expect(2) = 0.0
 Identities = 594/595 (99%)
 Strand = Plus / Plus


Query: 18  aaatatcataaaacccaaatattaaaatgagcgatattcaatactcaaaatacgtttcaa 77
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4   aaatatnataaaacccaaatattaaaatgagcgatattcaatactcaaaatacgtttcaa 63


Query: 78  atcaatatggttttgaacttgaatatccatcaaattggatagtaaaggaacattcagcaa 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  atcaatatggttttgaacttgaatatccatcaaattggatagtaaaggaacattcagcaa 123


Query: 138 tgtttttagcatctttcatggaatcaaacgataaaaactcaccaagtcttaatgttacaa 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 tgtttttagcatctttcatggaatcaaacgataaaaactcaccaagtcttaatgttacaa 183


Query: 198 ttcaaaatttagaaggatcaactggatcagatcaatctatgacaccaaaacaattattag 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 ttcaaaatttagaaggatcaactggatcagatcaatctatgacaccaaaacaattattag 243


Query: 258 atatttcaattcaacaaattcaacaaattaatgcaacccatattgaaacaggttcatgta 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 atatttcaattcaacaaattcaacaaattaatgcaacccatattgaaacaggttcatgta 303


Query: 318 aaatcggttcaaacagtgcagactttttatcatattatgcaccagaacaaaaagtaagaa 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 aaatcggttcaaacagtgcagactttttatcatattatgcaccagaacaaaaagtaagaa 363


Query: 378 ataaacaatgtttcttcataaagaataacaatgtattcatcatttcatatacctcatcaa 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ataaacaatgtttcttcataaagaataacaatgtattcatcatttcatatacctcatcaa 423


Query: 438 atggtgaattcacaaagaatttaccagcattggaacattgttgtaaaacctttaagaatt 497
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 atggtgaattcacaaagaatttaccagcattggaacattgttgtaaaacctttaagaatt 483


Query: 498 tcgaagcaaaaggatttaaatacactcaaatggaagcattcacatcaagtattaaaagct 557
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tcgaagcaaaaggatttaaatacactcaaatggaagcattcacatcaagtattaaaagct 543


Query: 558 catcatcagcagcaacctattattaccaatattgggtaccaaagacatggaaatc 612
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 catcatcagcagcaacctattattaccaatattgggtaccaaagacatggaaatc 598

 Score = 87.7 bits (44), Expect(2) = 0.0
 Identities = 44/44 (100%)
 Strand = Plus / Plus


Query: 620 gaatctaaacatcaagaatatacagactcttcaaataacttatc 663
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gaatctaaacatcaagaatatacagactcttcaaataacttatc 649

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,538,738,563
Number of extensions: 88198885
Number of successful extensions: 6986667
Number of sequences better than 10.0: 84
Length of query: 1419
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1395
Effective length of database: 97,308,875,965
Effective search space: 135745881971175
Effective search space used: 135745881971175
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 8
Homology vs Protein 
Query= Contig-U13840-1 (Contig-U13840-1Q) /CSM_Contig/Contig-U13840-1Q.Seq.d
         (1419 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001251_1578(CP001251|pid:none) Dictyoglomus turgidum DSM 6724,...    48   8e-04
AL021504_1(AL021504|pid:none) Caenorhabditis elegans YAC Y61B8B,...    39   0.60
BT056028_1(BT056028|pid:none) Zea mays full-length cDNA clone ZM...    36   3.0
EU962844_1(EU962844|pid:none) Zea mays clone 245965 unknown mRNA.      36   3.0
CP000117_4740(CP000117|pid:none) Anabaena variabilis ATCC 29413,...    36   3.9
CP001071_1263(CP001071|pid:none) Akkermansia muciniphila ATCC BA...    35   8.7

>CP001251_1578(CP001251|pid:none) Dictyoglomus turgidum DSM 6724,
           complete genome.
          Length = 178

 Score = 48.1 bits (113), Expect = 8e-04
 Identities = 41/159 (25%), Positives = 65/159 (40%), Gaps = 6/159 (3%)
 Frame = +2

Query: 35  NIKMSDIQYSKYVSNQYGFELEYPSNWIVKEHSAMFLA-SFMESNDKN-SPSLNVTIQNL 208
           NI ++D   +KYV  + GF +  P  W VK+     LA  F+   D+   P+ N+ + NL
Sbjct: 20  NILLADT--NKYVDEKLGFSIVPPEGWEVKDGKPYNLAVMFVGPADEGFMPNFNINVVNL 77

Query: 209 EGS-TGSDQSMTPKQLLDXXXXXXXXXNATHIETGSCKIGSNSADFLSYYAPEQK---VR 376
            G  T  ++ +  +  +          +   I  G   +       + Y     K
Sbjct: 78  PGEVTEINEDLISEIKVQLEAVGEYYGSLEFISEGVRDVSKYKGYEIVYTLNVDKGLSFE 137

Query: 377 NKQCFFIKNNNVFIISYTSSNGEFTKNLPALEHCCKTFK 493
            KQ + I     +I ++TS    F KNLPA E    TF+
Sbjct: 138 QKQVYIIYEGRFYIFTFTSLKDNFEKNLPAFEKSLSTFE 176

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,182,858,013
Number of extensions: 42673728
Number of successful extensions: 100762
Number of sequences better than 10.0: 6
Number of HSP's gapped: 100736
Number of HSP's successfully gapped: 6
Length of query: 473
Length of database: 1,051,180,864
Length adjustment: 132
Effective length of query: 341
Effective length of database: 623,955,076
Effective search space: 212768680916
Effective search space used: 212768680916
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.68  gvh: 0.41  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 24.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for Contig-U13840-1 is cyt
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 8
AH (FL, L) 0
AF (FL, S) 2
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0