| Contig-U13837-1 |
| Contig ID |
Contig-U13837-1 |
| Contig update |
2002.12.18 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
1201 |
| Chromosome number (1..6, M) |
5 |
| Chromosome length |
5062330 |
| Start point |
311377 |
| End point |
310240 |
| Strand (PLUS/MINUS) |
MINUS |
| Number of clones |
15 |
| Number of EST |
14 |
| Link to clone list |
U13837 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.12.14 |
| Homology vs DNA |
Query= Contig-U13837-1 (Contig-U13837-1Q) /CSM_Contig/Contig-U13837-1Q.Seq.d
(1201 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ344716) Dictyostelium discoideum cDNA clone:dda20d07, 3' ... 1229 0.0 1
(BJ428377) Dictyostelium discoideum cDNA clone:ddv11o18, 3' ... 1160 0.0 2
(BJ400773) Dictyostelium discoideum cDNA clone:dds14a22, 3' ... 1154 0.0 3
(BJ380795) Dictyostelium discoideum cDNA clone:ddc39h12, 3' ... 1132 0.0 3
(BJ398682) Dictyostelium discoideum cDNA clone:dds1g14, 3' e... 1122 0.0 2
(BJ401357) Dictyostelium discoideum cDNA clone:dds23a06, 3' ... 1088 0.0 2
(C94217) Dictyostelium discoideum slug cDNA, clone SSK554. 1082 0.0 1
(BJ399636) Dictyostelium discoideum cDNA clone:dds6f19, 3' e... 977 0.0 1
(BJ341081) Dictyostelium discoideum cDNA clone:dda5k03, 3' e... 902 0.0 1
(BJ399216) Dictyostelium discoideum cDNA clone:dds4h19, 3' e... 642 0.0 2
(BJ342774) Dictyostelium discoideum cDNA clone:dda1d17, 3' e... 706 0.0 1
(AU061284) Dictyostelium discoideum slug cDNA, clone SLD676. 434 e-123 2
(AU272076) Dictyostelium discoideum gamete cDNA clone:FC-IC1... 341 e-102 2
(AU074389) Dictyostelium discoideum slug cDNA, clone SSK554. 295 1e-88 3
(AU272077) Dictyostelium discoideum gamete cDNA clone:FC-IC1... 262 8e-76 2
(AL590969) Mouse DNA sequence from clone RP23-281C18 on chro... 52 0.050 1
(AC025424) Mus musculus clone RP23-286N22, WORKING DRAFT SEQ... 52 0.050 1
(BF988607) CM4-GN0083-181000-337-b10 GN0083 Homo sapiens cDN... 50 0.20 1
(CR382399) Plasmodium falciparum chromosome 6, complete sequ... 38 0.29 12
(AC157483) Pan troglodytes BAC clone CH251-287G22 from chrom... 48 0.78 1
(AC146090) Pan troglodytes BAC clone RP43-47O15 from chromos... 48 0.78 1
(AL096710) Human DNA sequence from clone RP1-61B2 on chromos... 48 0.78 1
(AC104619) Homo sapiens BAC clone RP11-192C21 from 4, comple... 48 0.78 1
(AC020606) Homo sapiens BAC clone RP11-563O5 from 7, complet... 48 0.78 1
(AC017021) Homo sapiens BAC clone RP11-208M4 from 7, complet... 48 0.78 1
(DU798184) fv01_fp012q434 Foamy virus vector integration jun... 48 0.78 1
(BV285968) S232P653RH7.T0 Beagle Canis familiaris STS genomi... 46 3.1 1
(AC074229) Mus musculus strain C57BL/6J clone rp23-242n21 ma... 46 3.1 1
(AC200681) Pongo abelii BAC clone CH276-216O22 from chromoso... 46 3.1 1
(AC199014) Pongo abelii BAC clone CH276-149K22 from chromoso... 46 3.1 1
(AM476275) Vitis vinifera contig VV78X017941.2, whole genome... 46 3.1 1
(AC151040) Callithrix jacchus clone CH259-508H16, WORKING DR... 46 3.1 1
(AC115710) Mus musculus clone RP23-82I23, WORKING DRAFT SEQU... 46 3.1 1
(CU468575) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 3.1 1
(CU234202) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 3.1 1
(AL844507) Plasmodium falciparum chromosome 8. 46 3.1 1
(AC209495) Saimiri boliviensis boliviensis clone CH254-74C5,... 46 3.1 1
(AC207847) Nomascus leucogenys leucogenys clone CH271-311O3,... 46 3.1 1
(AC186946) Callicebus moloch clone LB5-95P7, WORKING DRAFT S... 46 3.1 1
(AC186924) Callicebus moloch clone LB5-11P7, WORKING DRAFT S... 46 3.1 1
(AC185562) Callicebus moloch clone LB5-166E22, WORKING DRAFT... 46 3.1 1
(AC164474) Bos taurus clone CH240-148O19, *** SEQUENCING IN ... 46 3.1 1
(ET383850) S0212L09_T7 CHORI-214 Salmo salar genomic clone S... 46 3.1 1
(ET338296) S0075N20_SP6 CHORI-214 Salmo salar genomic clone ... 46 3.1 1
(DX905727) KBrH040E07F KBrH, Brassica rapa HindIII BAC libra... 46 3.1 1
(DU099602) JBnY025O23F Brassica napus BAC library JBnY Brass... 46 3.1 1
(CT035137) Sus scrofa genomic clone CH242-1A22, genomic surv... 46 3.1 1
(CR889394) Sus scrofa BES. 46 3.1 1
(CE507745) tigr-gss-dog-17000327373124 Dog Library Canis lup... 46 3.1 1
(FF519198) G710P5218RH1.T0 Acorn worm normalized juvenile pE... 46 3.1 1
(BF299141) 069PbG02 Pb cDNA #20, Charles Yowell and Jane Car... 32 4.1 3
(AC180034) Strongylocentrotus purpuratus clone R3-3030P16, W... 34 5.8 2
(AC178230) Strongylocentrotus purpuratus clone R3-3085O18, W... 34 5.9 2
(FE749866) CAYC666.b1 CAYC Petrolisthes cinctipes heart, ner... 40 9.7 2
(FE744233) CAYC2179.b1 CAYC Petrolisthes cinctipes heart, ne... 40 9.7 2
(FE743247) CAYC1442.b1 CAYC Petrolisthes cinctipes heart, ne... 40 9.7 2
(FE746319) CAYC3610.b1 CAYC Petrolisthes cinctipes heart, ne... 40 9.9 2
(FE744234) CAYC2179.g1 CAYC Petrolisthes cinctipes heart, ne... 40 9.9 2
>(BJ344716) Dictyostelium discoideum cDNA clone:dda20d07, 3' end,
single read.
Length = 684
Score = 1229 bits (620), Expect = 0.0
Identities = 629/633 (99%)
Strand = Plus / Minus
Query: 440 aaagttgcaattatgatgaatattgttattgtacagcaaagttccaaattgtgtatgtca 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aaagttgcaattatgatgaatattgttattgtacagcaaagttccaaattgtgtatgtca 623
Query: 500 aaaaattaatacacaaggttcaccatgcaattattcacgagattgtttaggtggattgac 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aaaaattaatacacaaggttcaccatgcaattattcacgagattgtttaggtggattgac 563
Query: 560 atgtaatagcggagtttgtggcaatccacaactcattgaattaggtggtagttgtttggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 atgtaatagcggagtttgtggcaatccacaactcattgaattaggtggtagttgtttggg 503
Query: 620 tacttataattgtgacaacaataatgattattgttattataatggtttttgtgattacaa 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tacttataattgtgacaacaataatgattattgttattataatggtttttgtgattacaa 443
Query: 680 taaaggattatattgttcagataatatttgtcaagaatttgtacaaccaagtccaaaatc 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 taaaggattatattgttcagataatatttgtcaagaatttgtacaaccaagtccaaaatc 383
Query: 740 atgtagtccaaatgctacagttagcgaatgctcagcatatcaaacttgtagttgttcaga 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 atgtagtccaaatgctacagttagcgaatgctcagcatatcaaacttgtagttgttcaga 323
Query: 800 tcatgaatgttatcagtctggtatatatccaccagaaagtctcaaaatgattgcatcatc 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tcatgaatgttatcagtctggtatatatccaccagaaagtctcaaaatgattgcatcatc 263
Query: 860 ccaattggaaaagtgcgcatatgataacaagtgctcacttaatgttaatttatattcatc 919
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 262 ccaattggaaaagtgcgcatatgataacaagtgcccacttaatgttaatttatattcatc 203
Query: 920 agagtcctgtctttcaaaacattgtagaaaagaaatttgtcaacgttatgttggtgatta 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 agagtcctgtctttcaaaacattgtagaaaagaaatttgtcaacgttatgttggtgatta 143
Query: 980 caaggttaaagaagaagatgattgtggaaaggaagaacttagagcagatttattattttg 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 caaggttaaagaagaagatgattgtggaaaggaagaacttagagcagatttattattttg 83
Query: 1040 cagtagtaactcttcatctaaaatctctcagtc 1072
|||||||||||||||||||| | ||| ||||||
Sbjct: 82 cagtagtaactcttcatctanantctntcagtc 50
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,255,627,807
Number of extensions: 73960875
Number of successful extensions: 5745011
Number of sequences better than 10.0: 58
Length of query: 1201
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1177
Effective length of database: 97,308,875,965
Effective search space: 114532547010805
Effective search space used: 114532547010805
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 7. 8 |
| Homology vs Protein |
Query= Contig-U13837-1 (Contig-U13837-1Q) /CSM_Contig/Contig-U13837-1Q.Seq.d
(1201 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC116977_110(AC116977|pid:none) Dictyostelium discoideum chromos... 73 2e-11
(Q52085) RecName: Full=Cell-cell adhesion glycoprotein 64; ... 72 5e-11
U28735_9(U28735|pid:none) Caenorhabditis elegans cosmid F48E3, c... 57 1e-06
AB079253_1(AB079253|pid:none) Dictyostelium discoideum Dd-gdcA m... 56 2e-06
U28735_10(U28735|pid:none) Caenorhabditis elegans cosmid F48E3, ... 55 4e-06
(P41951) RecName: Full=Prion-like-(Q/N-rich) domain-bearing prot... 54 8e-06
AB001327_1(AB001327|pid:none) Halocynthia roretzi mRNA for HrNot... 46 0.002
AY123118_1(AY123118|pid:none) Griffithsia japonica growth factor... 45 0.005
U03272_1(U03272|pid:none) Human fibrillin-2 mRNA, complete cds. 44 0.011
AB209735_1(AB209735|pid:none) Homo sapiens mRNA for fibrillin 2 ... 44 0.011
A54105(A54105;S17063;S31101)fibrillin-2 precursor - human 44 0.011
CP001131_2828(CP001131|pid:none) Anaeromyxobacter sp. K, complet... 44 0.015
AC115607_13(AC115607|pid:none) Dictyostelium discoideum chromoso... 42 0.033
BC149245_1(BC149245|pid:none) Bos taurus similar to CG33196-PB, ... 42 0.033
AP007166_484(AP007166|pid:none) Aspergillus oryzae RIB40 genomic... 42 0.033
CP000769_2860(CP000769|pid:none) Anaeromyxobacter sp. Fw109-5, c... 42 0.033
BC151354_1(BC151354|pid:none) Bos taurus latent transforming gro... 42 0.033
AK304737_1(AK304737|pid:none) Homo sapiens cDNA FLJ61597 partial... 42 0.033
AF007248_1(AF007248|pid:none) Mus musculus mutant fibrillin-1 (F... 42 0.043
(Q90827) RecName: Full=Protein NEL; AltName: Full=93 kDa protein... 42 0.043
AF135060_1(AF135060|pid:none) Rattus norvegicus fibrillin-2 mRNA... 42 0.043
AM746676_3301(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 42 0.057
AK220196_1(AK220196|pid:none) Mus musculus mRNA for mKIAA4226 pr... 42 0.057
(Q61555) RecName: Full=Fibrillin-2; Flags: Precursor; &A57278(A... 42 0.057
BC172946_1(BC172946|pid:none) Synthetic construct Mus musculus c... 42 0.057
M33753_1(M33753|pid:none) D.melanogaster crumbs protein mRNA, co... 41 0.074
(P10040) RecName: Full=Protein crumbs; AltName: Full=95F; Flags:... 41 0.074
(P35555) RecName: Full=Fibrillin-1; Flags: Precursor; &L13923_1... 41 0.096
X63556_1(X63556|pid:none) H.sapiens mRNA for fibrillin. 41 0.096
AL035436_2(AL035436|pid:none) Drosophila melanogaster cosmid clo... 41 0.096
(A2VCU8) RecName: Full=Protein kinase C-binding protein NELL2; A... 41 0.096
M16152_1(M16152|pid:none) Drosophila melanogaster Notch growth f... 41 0.096
EU854565_1(EU854565|pid:none) Danio rerio fibrillin 4 (fbn4) mRN... 40 0.13
AK123000_1(AK123000|pid:none) Homo sapiens cDNA FLJ16786 fis, cl... 40 0.13
(Q61554) RecName: Full=Fibrillin-1; Flags: Precursor; &A55624(A... 40 0.13
AC115680_32(AC115680|pid:none) Dictyostelium discoideum chromoso... 40 0.13
U20217_1(U20217|pid:none) Mus musculus fibrillin-2 mRNA, partial... 40 0.13
CP000251_2747(CP000251|pid:none) Anaeromyxobacter dehalogenans 2... 40 0.13
AL844547_6(AL844547|pid:none) Mouse DNA sequence from clone RP23... 40 0.13
(Q7ZXL5) RecName: Full=Protein kinase C-binding protein NELL2; A... 40 0.16
EU273942_1(EU273942|pid:none) Amphimedon queenslandica notch mRN... 40 0.16
(Q5IJ48) RecName: Full=Crumbs homolog 2; AltName: Full=Crumbs-li... 40 0.21
AF499438_1(AF499438|pid:none) Caenorhabditis briggsae notch-like... 40 0.21
AL365504_2(AL365504|pid:none) Human DNA sequence from clone RP11... 40 0.21
AB177798_1(AB177798|pid:none) Homo sapiens FBN3 gene for fibrill... 40 0.21
AB177799_1(AB177799|pid:none) Homo sapiens FBN3 gene for fibrill... 40 0.21
AB384635_1(AB384635|pid:none) Synthetic construct DNA, clone: pF... 40 0.21
(Q75N90) RecName: Full=Fibrillin-3; Flags: Precursor; &AY165863... 40 0.21
AY720432_1(AY720432|pid:none) Homo sapiens crumbs-like protein 2... 40 0.21
AK035019_1(AK035019|pid:none) Mus musculus 12 days embryo embryo... 39 0.28
BC170476_1(BC170476|pid:none) Xenopus laevis slit homolog 2 (Dro... 39 0.28
AK039790_1(AK039790|pid:none) Mus musculus adult male spinal cor... 39 0.28
AC024830_9(AC024830|pid:none) Caenorhabditis elegans cosmid Y55F... 39 0.28
AY046070_1(AY046070|pid:none) Xenopus laevis Slit mRNA, complete... 39 0.28
BC051968_1(BC051968|pid:none) Mus musculus NEL-like 2 (chicken),... 39 0.28
AB210518_1(AB210518|pid:none) Ciona intestinalis mRNA for jagged... 39 0.37
EU072820_1(EU072820|pid:none) Drosophila americana isolate IR04.... 39 0.37
AB041857_1(AB041857|pid:none) Ciona intestinalis mRNA for Ci-MET... 39 0.48
AF489528_1(AF489528|pid:none) Homo sapiens transforming growth f... 39 0.48
AL844509_613(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 39 0.48
AJ879619_2(AJ879619|pid:none) Solea senegalensis mRNA for very l... 39 0.48
AJ879619_1(AJ879619|pid:none) Solea senegalensis mRNA for very l... 39 0.48
A35626(A35626) transforming growth factor beta-1-binding protein... 39 0.48
BC144128_1(BC144128|pid:none) Homo sapiens latent transforming g... 39 0.48
AK298027_1(AK298027|pid:none) Homo sapiens cDNA FLJ51010 complet... 39 0.48
AB255883_1(AB255883|pid:none) Rhyparobia maderae VgR mRNA for vi... 39 0.48
AB208801_1(AB208801|pid:none) Homo sapiens mRNA for latent trans... 39 0.48
CP000513_277(CP000513|pid:none) Dichelobacter nodosus VCS1703A, ... 38 0.62
(A2ARV4) RecName: Full=Low-density lipoprotein receptor-related ... 38 0.62
EF110908_1(EF110908|pid:none) Rattus norvegicus nel-like 2 splic... 38 0.62
AK049346_1(AK049346|pid:none) Mus musculus ES cells cDNA, RIKEN ... 38 0.62
(O57409) RecName: Full=Delta-like protein B; Short=Delt... 38 0.62
AY089719_1(AY089719|pid:none) Rattus norvegicus neuron-specific ... 38 0.62
A18924_1(A18924|pid:none) Synthetic human cDNA of gene HE4. &S2... 38 0.82
AB299015_1(AB299015|pid:none) Haemaphysalis longicornis mRNA for... 38 0.82
BC102201_1(BC102201|pid:none) Bos taurus WAP four-disulfide core... 38 0.82
A35844(A35844)Xotch protein - African clawed frog 38 0.82
(P21783) RecName: Full=Neurogenic locus notch protein homolog; ... 38 0.82
EU072824_1(EU072824|pid:none) Drosophila americana isolate IR04.... 38 0.82
AB159785_1(AB159785|pid:none) Aspergillus oryzae csnC gene for c... 38 0.82
AK290856_1(AK290856|pid:none) Homo sapiens cDNA FLJ76037 complet... 37 1.1
T16408(T16408)hypothetical protein F48E3.9 - Caenorhabditis eleg... 37 1.1
AP007166_483(AP007166|pid:none) Aspergillus oryzae RIB40 genomic... 37 1.1
BC145488_1(BC145488|pid:none) Mus musculus slit homolog 2 (Droso... 37 1.4
AF369477_1(AF369477|pid:none) Mus musculus strain 129P3/J lipopr... 37 1.4
A49175(A49175;PH1570;S32113) Motch B protein - mouse (fragment) ... 37 1.4
AK155137_1(AK155137|pid:none) Mus musculus NOD-derived CD11c +ve... 37 1.4
(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor; 37 1.4
BC172642_1(BC172642|pid:none) Synthetic construct Mus musculus c... 37 1.4
AF074960_1(AF074960|pid:none) Mus musculus neurogenic extracellu... 37 1.4
BC059267_1(BC059267|pid:none) Mus musculus slit homolog 2 (Droso... 37 1.4
(Q9R1B9) RecName: Full=Slit homolog 2 protein; Short=Sl... 37 1.4
AK220505_1(AK220505|pid:none) Mus musculus mRNA for mKIAA4141 pr... 37 1.4
E88597(E88597)protein Y47D3B.6 [imported] - Caenorhabditis elegans 37 1.4
U42830_4(U42830|pid:none) Caenorhabditis elegans cosmid C53B7, c... 37 1.4
(Q91ZX7) RecName: Full=Prolow-density lipoprotein receptor-relat... 37 1.4
BC145487_1(BC145487|pid:none) Mus musculus slit homolog 2 (Droso... 37 1.4
AL031635_10(AL031635|pid:none) Caenorhabditis elegans YAC Y47D3B... 37 1.4
T28802(T28802) hypothetical protein C53B7.3 - Caenorhabditis ele... 37 1.4
EU152252_1(EU152252|pid:none) Hydra vulgaris notch mRNA, complet... 37 1.8
BX004856_1(BX004856|pid:none) Zebrafish DNA sequence from clone ... 37 1.8
BC163556_1(BC163556|pid:none) Danio rerio tenascin C, mRNA (cDNA... 37 1.8
DQ096731_1(DQ096731|pid:none) Danio rerio tenascin-C (TNC) mRNA,... 37 1.8
AF387320_1(AF387320|pid:none) Gallus gallus slit-2 mRNA, partial... 37 1.8
FN357327_12(FN357327|pid:none) Schistosoma mansoni genome sequen... 37 1.8
AE017351_299(AE017351|pid:none) Cryptococcus neoformans var. neo... 37 1.8
S28291(S28291)hypothetical protein ZC84.1 - Caenorhabditis elegans 36 2.4
D88550(D88550)protein ZC84.6 [imported] - Caenorhabditis elegans 36 2.4
FJ039903_1(FJ039903|pid:none) Hordeum vulgare DEP1 (DEP1) mRNA, ... 36 2.4
AE014134_2561(AE014134|pid:none) Drosophila melanogaster chromos... 36 2.4
AE014297_4237(AE014297|pid:none) Drosophila melanogaster chromos... 36 2.4
Z19157_4(Z19157|pid:none) Caenorhabditis elegans Cosmid ZC84, co... 36 2.4
AF288451_1(AF288451|pid:none) Xenopus laevis LTBP-1S protein mRN... 36 2.4
U42830_5(U42830|pid:none) Caenorhabditis elegans cosmid C53B7, c... 36 2.4
AF135059_1(AF135059|pid:none) Rattus norvegicus fibrillin-1 mRNA... 36 2.4
CP000769_3327(CP000769|pid:none) Anaeromyxobacter sp. Fw109-5, c... 36 2.4
AB287423_1(AB287423|pid:none) Entamoeba dispar igl1 mRNA for int... 36 2.4
CP001328_607(CP001328|pid:none) Micromonas sp. RCC299 chromosome... 36 2.4
AF135118_1(AF135118|pid:none) Drosophila melanogaster laminin al... 36 2.4
AC115598_37(AC115598|pid:none) Dictyostelium discoideum chromoso... 36 3.1
CT033758_4(CT033758|pid:none) Mouse DNA sequence from clone RP23... 36 3.1
Y12539_1(Y12539|pid:none) Branchiostoma floridae mRNA for putati... 36 3.1
(Q25464) RecName: Full=Adhesive plaque matrix protein 2; AltName... 36 3.1
Y13341_1(Y13341|pid:none) Homo sapiens mRNA for matrilin-3, part... 36 3.1
CT025750_1(CT025750|pid:none) Zebrafish DNA sequence from clone ... 36 3.1
S00670(S00670;A26637) neurogenic repetitive locus delta protein ... 36 3.1
BC094612_1(BC094612|pid:none) Mus musculus latent transforming g... 36 3.1
(Q8CIR0) RecName: Full=Latent-transforming growth factor beta-bi... 36 3.1
A31246(A31246)neurogenic protein Delta precursor - fruit fly (Dr... 36 3.1
(O15232) RecName: Full=Matrilin-3; Flags: Precursor; &AC079145_... 36 3.1
AJ001047_1(AJ001047|pid:none) Homo sapiens mRNA for matrilin-3. 36 3.1
T29764(T29764)hypothetical protein T21E3.3 - Caenorhabditis eleg... 35 4.1
AM746676_9116(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 35 4.1
AY286489_1(AY286489|pid:none) Danio rerio tenascin-R mRNA, compl... 35 4.1
AY437157_1(AY437157|pid:none) Drosophila melanogaster isolate so... 35 4.1
AJ536344_1(AJ536344|pid:none) Archispirostreptus sp. HD-2003 par... 35 4.1
AY438111_1(AY438111|pid:none) Drosophila melanogaster isolate so... 35 4.1
AY437145_1(AY437145|pid:none) Drosophila melanogaster isolate so... 35 4.1
BX510920_1(BX510920|pid:none) Zebrafish DNA sequence from clone ... 35 4.1
AY438125_1(AY438125|pid:none) Drosophila melanogaster isolate so... 35 4.1
(Q9R160) RecName: Full=Disintegrin and metalloproteinase domain-... 35 4.1
(Q9M4H4) RecName: Full=Ripening-related protein grip22; Flags: P... 35 4.1
AF210321_1(AF210321|pid:none) Danio rerio Slit2 (slit2) mRNA, co... 35 4.1
AL805948_1(AL805948|pid:none) Mouse DNA sequence from clone RP23... 35 4.1
(Q9JI18) RecName: Full=Low-density lipoprotein receptor-related ... 35 4.1
AY438113_1(AY438113|pid:none) Drosophila melanogaster isolate so... 35 5.3
AY438132_1(AY438132|pid:none) Drosophila melanogaster isolate so... 35 5.3
AK029528_1(AK029528|pid:none) Mus musculus adult male testis cDN... 35 5.3
AP008215_740(AP008215|pid:none) Oryza sativa (japonica cultivar-... 35 5.3
AP005419_8(AP005419|pid:none) Oryza sativa Japonica Group genomi... 35 5.3
AY437163_1(AY437163|pid:none) Drosophila melanogaster isolate so... 35 5.3
BC077950_1(BC077950|pid:none) Xenopus laevis cDNA clone MGC:8093... 35 5.3
(Q07954) RecName: Full=Prolow-density lipoprotein receptor-relat... 35 5.3
AY438115_1(AY438115|pid:none) Drosophila melanogaster isolate so... 35 5.3
AY438114_1(AY438114|pid:none) Drosophila melanogaster isolate so... 35 5.3
AB209498_1(AB209498|pid:none) Homo sapiens mRNA for low density ... 35 5.3
AY438105_1(AY438105|pid:none) Drosophila melanogaster isolate so... 35 5.3
AY437211_1(AY437211|pid:none) Drosophila melanogaster isolate so... 35 5.3
AY437205_1(AY437205|pid:none) Drosophila melanogaster isolate so... 35 5.3
DQ295883_1(DQ295883|pid:none) Glossina morsitans morsitans patte... 35 5.3
FJ039902_1(FJ039902|pid:none) Triticum aestivum DEP1 (DEP1) mRNA... 35 5.3
FJ501956_1(FJ501956|pid:none) Oryza sativa Indica Group keratin ... 35 5.3
Z27078_4(Z27078|pid:none) Caenorhabditis elegans Cosmid K04H4, c... 35 5.3
AY438104_1(AY438104|pid:none) Drosophila melanogaster isolate so... 35 5.3
AY437193_1(AY437193|pid:none) Drosophila melanogaster isolate so... 35 5.3
AF055585_1(AF055585|pid:none) Homo sapiens neurogenic extracellu... 35 6.9
(Q8JIY1) RecName: Full=Disintegrin and metalloproteinase domain-... 35 6.9
FJ222590_1(FJ222590|pid:none) Periplaneta americana Delta protei... 35 6.9
I48952(I48952;S48217) VLDL receptor precursor, long splice form ... 35 6.9
AK170264_1(AK170264|pid:none) Mus musculus NOD-derived CD11c +ve... 35 6.9
AF273707_2(AF273707|pid:none) Drosophila melanogaster PFTAIRE-in... 35 6.9
(O94813) RecName: Full=Slit homolog 2 protein; Short=Sl... 35 6.9
AP007151_614(AP007151|pid:none) Aspergillus oryzae RIB40 genomic... 35 6.9
BC019207_1(BC019207|pid:none) Mus musculus low density lipoprote... 35 6.9
AE017349_30(AE017349|pid:none) Cryptococcus neoformans var. neof... 35 6.9
CR933354_1(CR933354|pid:none) Mini antigen, Paramecium tetraurel... 35 6.9
BC143978_1(BC143978|pid:none) Homo sapiens slit homolog 2 (Droso... 35 6.9
(P35951) RecName: Full=Low-density lipoprotein receptor; ... 35 6.9
(Q8MI69) RecName: Full=WAP four-disulfide core domain protein 2;... 35 6.9
BC013622_1(BC013622|pid:none) Mus musculus very low density lipo... 35 6.9
L33417_1(L33417|pid:none) Mus musculus very low density lipoprot... 35 6.9
U57753_1(U57753|pid:none) Strongylocentrotus purpuratus SFE1 mRN... 35 6.9
(P98156) RecName: Full=Very low-density lipoprotein receptor; ... 35 6.9
U35363_1(U35363|pid:none) Bos taurus latent TGF-beta binding pro... 35 6.9
AM055942_182(AM055942|pid:none) Toxoplasma gondii RH, genomic DN... 35 6.9
AE014187_343(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 35 6.9
AY046071_1(AY046071|pid:none) Gallus gallus Slit mRNA, partial c... 34 9.0
AB080947_1(AB080947|pid:none) Paralichthys olivaceus TNFR-2 mRNA... 34 9.0
CR759822_3(CR759822|pid:none) Zebrafish DNA sequence from clone ... 34 9.0
AB009671_2(AB009671|pid:none) Homo sapiens mRNA for MDC2 alpha, ... 34 9.0
CP000769_2725(CP000769|pid:none) Anaeromyxobacter sp. Fw109-5, c... 34 9.0
(Q9P0K1) RecName: Full=Disintegrin and metalloproteinase domain-... 34 9.0
S25111(S25111;S32554) alpha-2-macroglobulin receptor precursor -... 34 9.0
(P98158) RecName: Full=Low-density lipoprotein receptor-related ... 34 9.0
>AC116977_110(AC116977|pid:none) Dictyostelium discoideum chromosome 2
map 5515173-5817331 strain AX4, complete sequence.
Length = 350
Score = 72.8 bits (177), Expect = 2e-11
Identities = 74/314 (23%), Positives = 123/314 (39%), Gaps = 12/314 (3%)
Frame = +3
Query: 99 VNSSCPNCLKENDICDSGG----TCSDDTKCLS---NNSSSPRCTKYLKSGDKC-DPGVY 254
+ C CLKE + C + G +CSD C S N C + + G+ C D V
Sbjct: 24 IEPKCFKCLKEGEECVTDGFKIGSCSDGLICGSDPNNEFEKYVCIQPKRYGESCVDSSV- 82
Query: 255 LCILGTSCILDKSNVYRCLDYGFRSLGEQCQLQSDC---VDQLDCINNVCSHDPTKYTHC 425
C +G C S +C + F S+GEQC DC VD++ CI+ C T
Sbjct: 83 -CDIGLLC----SEANQCDNIRFSSVGEQCSRDQDCSLGVDKVSCIDGFCKLKSNTCTSD 137
Query: 426 HDIDEKXXXXXXXXXYSKVPNCVCQKINTQGSPCNYSRDCLGGLTCNSGVCGNPQLIELG 605
++ YS ++N S + + D L + ++ +C P ++L
Sbjct: 138 NECQGGFACVDSQCVYS-------IQLNQSCSGSDVACDTLAFCSESTQLCSLPYSLDLN 190
Query: 606 GSC-LGTXXXXXXXXXXXXXXXXXXXKGLYCSDNICQEFVQPSPKSCSPNATVSECSAYQ 782
+C + L S++I + S K CS ++ C +
Sbjct: 191 ETCTFNDDFDYQCKPNLTCSKKGTCIESLNDSNSINE---NNSEKQCS----INSCGIGK 243
Query: 783 TCSCSDHECYQSGIYPPESLKMIASSQLEKCAYDNKCSLNVNLYSSESCLSKHCRKEICQ 962
C C+ C E L ++ +C N+C + N YS SC +KHC
Sbjct: 244 YCDCNSGNCLNDTYDHFEHL-----TRKTECIIRNRCRMVENFYSRSSCFTKHC------ 292
Query: 963 RYVGDYKVKEEDDC 1004
+Y+ D ++++++ C
Sbjct: 293 KYI-DIEIQKKNPC 305
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,620,469,803
Number of extensions: 31022600
Number of successful extensions: 84563
Number of sequences better than 10.0: 194
Number of HSP's gapped: 83807
Number of HSP's successfully gapped: 234
Length of query: 400
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 269
Effective length of database: 627,191,635
Effective search space: 168714549815
Effective search space used: 168714549815
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
1 |
| AH (FL, L) |
0 |
| AF (FL, S) |
3 |
| SL (DIR, L) |
1 |
| SS (DIR, S) |
2 |
| SH (FL, L) |
0 |
| SF (FL, S) |
5 |
| CH (FL, L) |
1 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
1 |
| FC-IC (SUB) |
1 |