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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U02317-1
Contig ID Contig-U02317-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U02317-1 (Contig-U02317-1Q) /CSM_Contig/Contig-U02317-1Q.Seq.d
TAATCATATATAAAAGCTAAAAATAAAAAAAAAAAATTTTAAAAAAAAAT
TAAAAAATTAAGAACAAAAAAAAAAAATAAAAGGATGTCTTGGAGAGCAT
TATTATCACACAACTTACAAGAAATTAGAATTACATTTTGTCAATCCAAT
CAAAGTAGTGAAGGTTTGAGAAACTTTGTTGTAAAGAATTACTCTGATTT
AAAAAGATTAAATCCAAAATTACCATTACTCATTCGTGAAGGTCATGGTG
TTGAACCAGTAATTTACGCTCGTTATGATTGGGGTAAAGAAGAAAAGAAA
GTTGTTACTAATTTAACCGAACAAGAAGTTGAAGAGAAATTAAAAGAATT
ATGTTTAATGGGTAGTAAATTCGATAAATCACCAGAAAGTGAATTTGATG
AAGTTGATATCGTATCTGCTTATCAAAAACCAATTTTAAATTATAGACCA
ATTTTTTAGATAAAATCGAACGTGTCATATAATTAATAAATAATAATAAC
AATAATATAATAATAACAATAATAATAATAATAATAATAATTTTTCCATT
TTTTTTTTTTATAAAATAGATTTTTAAGAAAAGTAATAATTTAATTTATA
AATAATAATAATAATGATAATAATAGTAATAGTAAAACCATAAAAAAAAA
AAAAAAAAAAC----------GGGGGAAAGAAGAAAAGAAAGNGGNNCCT
NATTTNCCCGCCCCNGCNGGNGNNGNGGAATTAAAAGNATTANGNTTNNG
GGGGGGGAAATCCGNTAANCCCCCCGNAAGGGNATTTGNTGNAGNTGAT
Gap gap included
Contig length 789
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 1727790
End point 1727109
Strand (PLUS/MINUS) MINUS
Number of clones 8
Number of EST 10
Link to clone list U02317
List of clone(s) 

est1=SSM729F,1,492
est2=VSK277F,57,577
est3=VSJ611Z,78,558
est4=SSJ681F,83,525
est5=VSJ611F,86,651
est6=SSM635Z,105,642
est7=SSB385Z,197,662
est8=SSB550Z,223,641
est9=VSB476Z,343,643
est10=VSK277Z,663,791
Translated Amino Acid sequence 
*syikaknkkkkf*kkikklrtkkknkrmswrallshnlqeiritfcqsnqsseglrnfv
vknysdlkrlnpklpllireghgvepviyarydwgkeekkvvtnlteqeveeklkelclm
gskfdkspesefdevdivsayqkpilnyrpif*iksnvsyn**iiitii***q*******
ffhfffl*nrflrkvii*FINNNNNDNNSNSKTIKKKKKK---

---GKEEKKXXPXXPAPAGXXELKXLXXXGGKSXXPPXRXFXXXD
Translated Amino Acid sequence (All Frames) 
Frame A:
*syikaknkkkkf*kkikklrtkkknkrmswrallshnlqeiritfcqsnqsseglrnfv
vknysdlkrlnpklpllireghgvepviyarydwgkeekkvvtnlteqeveeklkelclm
gskfdkspesefdevdivsayqkpilnyrpif*iksnvsyn**iiitii***q*******
ffhfffl*nrflrkvii*FINNNNNDNNSNSKTIKKKKKK---

---ggkkkrkxxlixppxxxxxn*kxxxxgggnpxxppxgxlxxx

Frame B:
nhi*klkikkknfkkklkn*eqkkkikgclgehyyhttykklelhfvnpikvvkv*etll
*ritli*kd*iqnyhysfvkvmvlnq*ftlvmigvkkkrkllli*pnkklkrn*knyv*w
vvnsinhqkvnlmklisylliknqf*iidqffr*nrtchiink***q*ynnnnnnnnnnn
fsifffykidf*ek**fnl*iiiimiiivivkp*kkkkkn---

---gerrkexgxxfxrpxxxxgikxixxxggeir*xprkgixxx*

Frame C:
iiyks*k*kkkilkkn*kiknkkkk*kdvlesiiitqltrn*nyilsiqsk**rfeklcc
kell*fkkikskitiths*rswc*tsnlrsl*lg*rrkescy*fnrtrs*reikrimfng
**ir*itrk*i**s*yriclsktnfkl*tnfldkiervi*linnnnnniiitiiiiiiii
fpffffik*ifkksnnliyk***********nhkkkkkk---

---GKEEKKXXPXXPAPAGXXELKXLXXXGGKSXXPPXRXFXXXD
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U02317-1 (Contig-U02317-1Q)
/CSM_Contig/Contig-U02317-1Q.Seq.d
         (799 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U02317-1 (Contig-U02317-1Q) /CSM_Contig/Conti...   791  0.0
Contig-U01364-1 (Contig-U01364-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U10794-1 (Contig-U10794-1Q) /CSM_Contig/Conti...    36  0.056
Contig-U05046-1 (Contig-U05046-1Q) /CSM_Contig/Conti...    36  0.056
Contig-U13982-1 (Contig-U13982-1Q) /CSM_Contig/Conti...    34  0.22
Contig-U13894-1 (Contig-U13894-1Q) /CSM_Contig/Conti...    34  0.22
Contig-U13884-1 (Contig-U13884-1Q) /CSM_Contig/Conti...    34  0.22
Contig-U11888-1 (Contig-U11888-1Q) /CSM_Contig/Conti...    34  0.22
Contig-U11802-1 (Contig-U11802-1Q) /CSM_Contig/Conti...    34  0.22
Contig-U11507-1 (Contig-U11507-1Q) /CSM_Contig/Conti...    34  0.22

>Contig-U02317-1 (Contig-U02317-1Q) /CSM_Contig/Contig-U02317-1Q.Seq.d
          Length = 799

 Score =  791 bits (399), Expect = 0.0
 Identities = 399/399 (100%)
 Strand = Plus / Plus

                                                                       
Query: 78  taaaaggatgtcttggagagcattattatcacacaacttacaagaaattagaattacatt 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78  taaaaggatgtcttggagagcattattatcacacaacttacaagaaattagaattacatt 137

                                                                       
Query: 138 ttgtcaatccaatcaaagtagtgaaggtttgagaaactttgttgtaaagaattactctga 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 ttgtcaatccaatcaaagtagtgaaggtttgagaaactttgttgtaaagaattactctga 197

                                                                       
Query: 198 tttaaaaagattaaatccaaaattaccattactcattcgtgaaggtcatggtgttgaacc 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 tttaaaaagattaaatccaaaattaccattactcattcgtgaaggtcatggtgttgaacc 257

                                                                       
Query: 258 agtaatttacgctcgttatgattggggtaaagaagaaaagaaagttgttactaatttaac 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 agtaatttacgctcgttatgattggggtaaagaagaaaagaaagttgttactaatttaac 317

                                                                       
Query: 318 cgaacaagaagttgaagagaaattaaaagaattatgtttaatgggtagtaaattcgataa 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 cgaacaagaagttgaagagaaattaaaagaattatgtttaatgggtagtaaattcgataa 377

                                                                       
Query: 378 atcaccagaaagtgaatttgatgaagttgatatcgtatctgcttatcaaaaaccaatttt 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 atcaccagaaagtgaatttgatgaagttgatatcgtatctgcttatcaaaaaccaatttt 437

                                                  
Query: 438 aaattatagaccaattttttagataaaatcgaacgtgtc 476
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aaattatagaccaattttttagataaaatcgaacgtgtc 476


 Score = 69.9 bits (35), Expect = 4e-12
 Identities = 71/71 (100%)
 Strand = Plus / Plus

                                                                       
Query: 672 gggggaaagaagaaaagaaagnggnncctnatttncccgccccngcnggngnngnggaat 731
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 gggggaaagaagaaaagaaagnggnncctnatttncccgccccngcnggngnngnggaat 731

                      
Query: 732 taaaagnatta 742
           |||||||||||
Sbjct: 732 taaaagnatta 742


 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 621 taatagtaatagtaaaaccat 641
           |||||||||||||||||||||
Sbjct: 621 taatagtaatagtaaaaccat 641


 Score = 36.2 bits (18), Expect = 0.056
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                            
Query: 1  taatcatatataaaagct 18
          ||||||||||||||||||
Sbjct: 1  taatcatatataaaagct 18


 Score = 34.2 bits (17), Expect = 0.22
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                
Query: 281 ggggtaaagaagaaaagaaag 301
           |||| ||||||||||||||||
Sbjct: 672 gggggaaagaagaaaagaaag 692


 Score = 34.2 bits (17), Expect = 0.22
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                
Query: 672 gggggaaagaagaaaagaaag 692
           |||| ||||||||||||||||
Sbjct: 281 ggggtaaagaagaaaagaaag 301


>Contig-U01364-1 (Contig-U01364-1Q) /CSM_Contig/Contig-U01364-1Q.Seq.d
          Length = 155

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 621 taatagtaatagtaaaaccat 641
           |||||||||||||||||||||
Sbjct: 26  taatagtaatagtaaaaccat 46


 Score = 30.2 bits (15), Expect = 3.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 621 taatagtaatagtaa 635
           |||||||||||||||
Sbjct: 20  taatagtaatagtaa 34


>Contig-U10794-1 (Contig-U10794-1Q) /CSM_Contig/Contig-U10794-1Q.Seq.d
          Length = 1619

 Score = 36.2 bits (18), Expect = 0.056
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 208  ttaaatccaaaattacca 225
            ||||||||||||||||||
Sbjct: 1580 ttaaatccaaaattacca 1597


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8605
Number of Sequences: 6905
Number of extensions: 8605
Number of successful extensions: 1114
Number of sequences better than 10.0: 171
length of query: 799
length of database: 5,674,871
effective HSP length: 16
effective length of query: 783
effective length of database: 5,564,391
effective search space: 4356918153
effective search space used: 4356918153
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 5.17
Homology vs DNA 
Query= Contig-U02317-1 (Contig-U02317-1Q) /CSM_Contig/Contig-U02317-1Q.Seq.d
         (799 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU270925) Dictyostelium discoideum vegetative cDNA clone:VS...   779   0.0    1
(AU270195) Dictyostelium discoideum vegetative cDNA clone:VS...   775   0.0    1
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...   389   0.0    2
(C93331) Dictyostelium discoideum slug cDNA, clone SSM635.        712   0.0    1
(AU270196) Dictyostelium discoideum vegetative cDNA clone:VS...   692   0.0    1
(C84248) Dictyostelium discoideum slug cDNA, clone SSB385.        525   e-145  1
(AU037164) Dictyostelium discoideum slug cDNA, clone SSB550.      492   e-134  1
(AU074163) Dictyostelium discoideum slug cDNA, clone SSJ681.      476   e-130  1
(AU075013) Dictyostelium discoideum slug cDNA, clone SSM729.      313   6e-81  1
(AU262036) Dictyostelium discoideum vegetative cDNA clone:VS...   266   1e-66  1
(AC136664) Rattus norvegicus clone CH230-229G9, WORKING DRAF...    48   0.52   1
(AC118099) Rattus norvegicus clone CH230-132A20, *** SEQUENC...    48   0.52   1
(BH132687) ENTNS42TR Entamoeba histolytica Sheared DNA Entam...    38   1.2    2
(AZ541899) ENTDT55TR Entamoeba histolytica Sheared DNA Entam...    38   1.5    2
(AZ690720) ENTIW14TR Entamoeba histolytica Sheared DNA Entam...    38   1.5    2
(BH137599) ENTNQ33TR Entamoeba histolytica Sheared DNA Entam...    38   1.5    2
(BH138604) ENTNF69TR Entamoeba histolytica Sheared DNA Entam...    38   1.6    2
(CT559781) A BAC library has been constructed from cultivar ...    36   1.8    3
(BX323061) Mouse DNA sequence from clone RP24-267L10 on chro...    46   2.1    1
(CU914384) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.1    1
(CU694560) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.1    1
(ET647595) JBVRO02TR JBVR Allium cepa genomic clone JBVRO_RP...    46   2.1    1
(ET644322) JBVRO02TF JBVR Allium cepa genomic clone JBVRO_RP...    46   2.1    1
(AU270926) Dictyostelium discoideum vegetative cDNA clone:VS...    46   2.1    1
(CK404724) AUF_IfSpn_231_d16 Ictalurus furcatus spleen cDNA ...    46   2.1    1
(FD099608) CBFH6229.b1 CBFH: Normalized blue catfish cDNA li...    46   2.1    1
(AC137822) Medicago truncatula clone mth2-31e20, complete se...    36   2.3    5
(C22963) Dictyostelium discoideum gamete cDNA, clone FC-AL03.      36   2.8    2
(AU284570) Dictyostelium discoideum gamete cDNA clone:FC-BD1...    36   2.9    2
(CS163644) Sequence 400 from Patent WO2005085280.                  44   4.1    2
(DX997497) CHORI103-51C10.TJ.1 CHORI103 Schistosoma mansoni ...    34   5.3    2
(EJ754752) 1092963067505 Global-Ocean-Sampling_GS-30-02-01-1...    40   5.4    2
(AZ674237) ENTIP78TR Entamoeba histolytica Sheared DNA Entam...    42   5.5    2
(AZ689018) ENTKP90TR Entamoeba histolytica Sheared DNA Entam...    42   5.8    2
(FJ266023) Oryza granulata clone OG_ABa077F15_032P05, comple...    36   6.6    5
(CR382121) Kluyveromyces lactis strain NRRL Y-1140 chromosom...    44   8.1    1
(CR380949) Candida glabrata strain CBS138 chromosome C compl...    44   8.1    1
(CS468878) Sequence 69 from Patent EP1748080.                      44   8.1    1
(CS468831) Sequence 22 from Patent EP1748080.                      44   8.1    1
(CS419355) Sequence 69 from Patent WO2006094836.                   44   8.1    1
(CS419308) Sequence 22 from Patent WO2006094836.                   44   8.1    1
(GC843921) Sequence 159166 from patent US 6812339.                 44   8.1    1
(GC700947) Sequence 16192 from patent US 6812339.                  44   8.1    1
(AE014134) Drosophila melanogaster chromosome 2L, complete s...    44   8.1    1
(AC150555) Drosophila melanogaster clone BACR26G12, complete...    44   8.1    1
(AC007299) Drosophila melanogaster, chromosome 2L, region 30...    44   8.1    1
(AL139090) Human DNA sequence from clone RP11-12B13 on chrom...    44   8.1    1
(AC024900) Homo sapiens 12 BAC RP11-549E9 (Roswell Park Canc...    44   8.1    1
(AC157831) Strongylocentrotus purpuratus clone R3-3091A7, WO...    44   8.1    1
(CU856644) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.1    1
(CU607027) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.1    1
(AC233592) Eulemur macaco macaco clone CH273-411M21, WORKING...    44   8.1    1
(AC201301) Strongylocentrotus purpuratus clone R3-16I19, WOR...    44   8.1    1
(AC184685) Strongylocentrotus purpuratus clone R3-3002H13, W...    44   8.1    1
(AC181120) Strongylocentrotus purpuratus clone R3-16K17, WOR...    44   8.1    1
(AC178038) Strongylocentrotus purpuratus clone R3-3055O21, W...    44   8.1    1
(AC168566) Strongylocentrotus purpuratus clone R3-3091A7, WO...    44   8.1    1
(AC021774) Homo sapiens clone RP11-13C18, WORKING DRAFT SEQU...    44   8.1    1
(AC020262) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    44   8.1    1
(AC011836) Homo sapiens chromosome 11 clone RP11-151J24 map ...    44   8.1    1
(ER541544) 1093016061618 Global-Ocean-Sampling_GS-35-01-01-1...    44   8.1    1
(EJ093433) 1095460223103 Global-Ocean-Sampling_GS-26-01-01-1...    44   8.1    1
(EJ026817) 1095454028634 Global-Ocean-Sampling_GS-26-01-01-1...    44   8.1    1
(EI725396) 2B421022E02TF BAC library from breast tumor sampl...    44   8.1    1
(CE815444) tigr-gss-dog-17000318383819 Dog Library Canis lup...    44   8.1    1
(CX120502) MPA04884 Embryonic day 10 Mouse Pancreas Amplifie...    44   8.1    1
(BM880766) rb18a09.y1 Meloidogyne incognita egg pAMP1 Bird M...    44   8.1    1
(BM774742) ra97b02.y1 Meloidogyne incognita egg pAMP1 Bird M...    44   8.1    1
(AW571311) ra16g10.y2 Bird-Rao Meloidogyne incognita J2 Melo...    44   8.1    1
(AW571255) ra16b04.y2 Bird-Rao Meloidogyne incognita J2 Melo...    44   8.1    1
(AW570934) ra13a02.y1 Bird-Rao Meloidogyne incognita J2 Melo...    44   8.1    1
(AW570774) ra10g11.y1 Bird-Rao Meloidogyne incognita J2 Melo...    44   8.1    1
(CP000111) Prochlorococcus marinus str. MIT 9312, complete g...    44   8.1    1
(AE017244) Mycoplasma hyopneumoniae 7448, complete genome.         36   10.0   10

>(AU270925) Dictyostelium discoideum vegetative cDNA clone:VSK277,
           5' end single read.
          Length = 521

 Score =  779 bits (393), Expect = 0.0
 Identities = 393/393 (100%)
 Strand = Plus / Plus


Query: 84  gatgtcttggagagcattattatcacacaacttacaagaaattagaattacattttgtca 143
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28  gatgtcttggagagcattattatcacacaacttacaagaaattagaattacattttgtca 87


Query: 144 atccaatcaaagtagtgaaggtttgagaaactttgttgtaaagaattactctgatttaaa 203
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88  atccaatcaaagtagtgaaggtttgagaaactttgttgtaaagaattactctgatttaaa 147


Query: 204 aagattaaatccaaaattaccattactcattcgtgaaggtcatggtgttgaaccagtaat 263
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 aagattaaatccaaaattaccattactcattcgtgaaggtcatggtgttgaaccagtaat 207


Query: 264 ttacgctcgttatgattggggtaaagaagaaaagaaagttgttactaatttaaccgaaca 323
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttacgctcgttatgattggggtaaagaagaaaagaaagttgttactaatttaaccgaaca 267


Query: 324 agaagttgaagagaaattaaaagaattatgtttaatgggtagtaaattcgataaatcacc 383
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 agaagttgaagagaaattaaaagaattatgtttaatgggtagtaaattcgataaatcacc 327


Query: 384 agaaagtgaatttgatgaagttgatatcgtatctgcttatcaaaaaccaattttaaatta 443
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 agaaagtgaatttgatgaagttgatatcgtatctgcttatcaaaaaccaattttaaatta 387


Query: 444 tagaccaattttttagataaaatcgaacgtgtc 476
           |||||||||||||||||||||||||||||||||
Sbjct: 388 tagaccaattttttagataaaatcgaacgtgtc 420

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 607,399,284
Number of extensions: 41955660
Number of successful extensions: 3399023
Number of sequences better than 10.0: 76
Length of query: 799
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 775
Effective length of database: 99,340,224,878
Effective search space: 76988674280450
Effective search space used: 76988674280450
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.19
Homology vs Protein 
Query= Contig-U02317-1 (Contig-U02317-1Q) /CSM_Contig/Contig-U02317-1Q.Seq.d
         (799 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116963_90(AC116963|pid:none) Dictyostelium discoideum chromoso...   251   3e-65
EF144500_1(EF144500|pid:none) Populus trichocarpa clone PX0019_N...   101   2e-20
BT071647_1(BT071647|pid:none) Picea sitchensis clone WS0294_D08 ...    99   2e-19
EU965985_1(EU965985|pid:none) Zea mays clone 290586 NADH-ubiquin...    99   2e-19
EU963095_1(EU963095|pid:none) Zea mays clone 257497 NADH-ubiquin...    99   2e-19
EF146609_1(EF146609|pid:none) Populus trichocarpa clone WS01210_...    98   4e-19
AY347482_1(AY347482|pid:none) Chlamydomonas reinhardtii NADH:ubi...    93   1e-17
AB016886_23(AB016886|pid:none) Arabidopsis thaliana genomic DNA,...    92   3e-17
BC135400_1(BC135400|pid:none) Xenopus tropicalis hypothetical pr...    84   4e-15
AM270279_15(AM270279|pid:none) Aspergillus niger contig An12c023...    83   9e-15
BT048954_1(BT048954|pid:none) Salmo salar clone ssal-eve-555-131...    81   5e-14
BC095772_1(BC095772|pid:none) Danio rerio zgc:112340, mRNA (cDNA...    80   6e-14
(Q07842) RecName: Full=NADH-ubiquinone oxidoreductase 10.5 kDa s...    80   1e-13
BT079003_1(BT079003|pid:none) Esox lucius clone eluc-evq-520-279...    79   2e-13
CP000594_276(CP000594|pid:none) Ostreococcus lucimarinus CCE9901...    78   3e-13
BT074281_1(BT074281|pid:none) Oncorhynchus mykiss clone omyk-evo...    78   4e-13
AC144539_13(AC144539|pid:none) Medicago truncatula clone mth2-11...    75   2e-12
DQ066277_1(DQ066277|pid:none) Ixodes scapularis isolate is-all-6...    73   9e-12
DQ214584_1(DQ214584|pid:none) Taeniopygia guttata clone 0063P001...    73   1e-11
AF124786_1(AF124786|pid:none) Mus musculus NADH-ubiquinone oxido...    72   2e-11
(Q9CQ75) RecName: Full=NADH dehydrogenase [ubiquinone] 1 alpha s...    72   2e-11
CP001330_426(CP001330|pid:none) Micromonas sp. RCC299 chromosome...    72   2e-11
DQ885741_1(DQ885741|pid:none) Pongo pygmaeus mitochondrial compl...    72   2e-11
AB168234_1(AB168234|pid:none) Macaca fascicularis testis cDNA cl...    72   2e-11
CU633899_24(CU633899|pid:none) Podospora anserina genomic DNA ch...    72   3e-11
AL032652_9(AL032652|pid:none) Caenorhabditis elegans YAC Y63D3A,...    69   2e-10
(Q0MQ92) RecName: Full=NADH dehydrogenase [ubiquinone] 1 alpha s...    68   4e-10
CR382129_116(CR382129|pid:none) Yarrowia lipolytica strain CLIB1...    68   4e-10
BT080885_1(BT080885|pid:none) Caligus clemensi clone ccle-evs-51...    67   5e-10
EU974953_1(EU974953|pid:none) Zea mays clone 461624 unknown mRNA.      66   1e-09
AP006852_107(AP006852|pid:none) Candida albicans genomic DNA, ch...    66   1e-09
FN317521_1(FN317521|pid:none) Schistosoma japonicum isolate Anhu...    65   3e-09
FN357586_2(FN357586|pid:none) Schistosoma mansoni genome sequenc...    64   4e-09
AE014134_782(AE014134|pid:none) Drosophila melanogaster chromoso...    63   1e-08
CR382138_953(CR382138|pid:none) Debaryomyces hansenii strain CBS...    63   1e-08
AE017348_288(AE017348|pid:none) Cryptococcus neoformans var. neo...    63   1e-08
CP000499_625(CP000499|pid:none) Pichia stipitis CBS 6054 chromos...    61   4e-08
T19441(T19441) hypothetical protein C25A1.13 - Caenorhabditis el...    45   0.002
EF145491_1(EF145491|pid:none) Populus trichocarpa clone WS01125_...    43   0.014
CU928170_458(CU928170|pid:none) Kluyveromyces thermotolerans str...    40   0.12
AM502250_374(AM502250|pid:none) Leishmania infantum chromosome 3...    39   0.15
AM494969_346(AM494969|pid:none) Leishmania braziliensis chromoso...    39   0.20
FN392319_943(FN392319|pid:none) Pichia pastoris GS115 chromosome...    38   0.33
(Q06090) RecName: Full=54S ribosomal protein L51, mitochondrial;...    38   0.33
BT074576_1(BT074576|pid:none) Osmerus mordax clone omor-eva-510-...    37   0.57
AK227646_1(AK227646|pid:none) Arabidopsis thaliana mRNA for hypo...    37   0.57
BT079508_1(BT079508|pid:none) Esox lucius clone eluc-evq-532-304...    37   0.57
FN319748_1(FN319748|pid:none) Schistosoma japonicum isolate Anhu...    35   2.2
BT081514_1(BT081514|pid:none) Rana catesbeiana clone rcat-evr-52...    35   2.2
AH1318(AH1318) diaminopimelate decarboxylase homolog lysA [impor...    35   2.2
AY223251_1(AY223251|pid:none) Schistosoma japonicum SJCHGC04526 ...    35   2.2
AE017262_1962(AE017262|pid:none) Listeria monocytogenes str. 4b ...    35   2.2
CP000393_2483(CP000393|pid:none) Trichodesmium erythraeum IMS101...    35   3.7
T20856(T20856)hypothetical protein F13G3.6 - Caenorhabditis eleg...    35   3.7
EU960743_1(EU960743|pid:none) Zea mays clone 228174 mitochondria...    35   3.7
AP007166_421(AP007166|pid:none) Aspergillus oryzae RIB40 genomic...    35   3.7
CR382126_362(CR382126|pid:none) Kluyveromyces lactis strain NRRL...    34   4.8
AC105928_7(AC105928|pid:none) Oryza sativa (japonica cultivar-gr...    34   6.3
(Q758S3) RecName: Full=54S ribosomal protein L51, mitochondrial;...    34   6.3
AM263198_1978(AM263198|pid:none) Listeria welshimeri serovar 6b ...    33   8.2
EF085696_1(EF085696|pid:none) Picea sitchensis clone WS02919_G03...    33   8.2

>AC116963_90(AC116963|pid:none) Dictyostelium discoideum chromosome
           2 map 4657875-4914984 strain AX4, complete sequence.
          Length = 131

 Score =  251 bits (640), Expect = 3e-65
 Identities = 123/125 (98%), Positives = 124/125 (99%)
 Frame = +1

Query: 82  RMSWRALLSHNLQEIRITFCQSNQSSEGLRNFVVKNYSDLKRLNPKLPLLIREGHGVEPV 261
           +MSWRALLSHNLQEIRITFCQSNQSSEGLRNFVVKNYSDLKRLNPKLPLLIREGHGVEPV
Sbjct: 7   QMSWRALLSHNLQEIRITFCQSNQSSEGLRNFVVKNYSDLKRLNPKLPLLIREGHGVEPV 66

Query: 262 IYARYDWGKEEKKVVTNLTEQEVEEKLKELCLMGSKFDKSPESEFDEVDIVSAYQKPILN 441
           IYARYDWGKEEKKVVTNLTEQEVEEKLKELCLMGSKFDKSPESEFDEVDIVSAYQKPILN
Sbjct: 67  IYARYDWGKEEKKVVTNLTEQEVEEKLKELCLMGSKFDKSPESEFDEVDIVSAYQKPILN 126

Query: 442 YRPIF 456
           YR IF
Sbjct: 127 YRQIF 131

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 750,826,604
Number of extensions: 14227726
Number of successful extensions: 31140
Number of sequences better than 10.0: 61
Number of HSP's gapped: 31107
Number of HSP's successfully gapped: 61
Length of query: 266
Length of database: 1,051,180,864
Length adjustment: 126
Effective length of query: 140
Effective length of database: 643,374,430
Effective search space: 90072420200
Effective search space used: 90072420200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.75  gvh: 0.40  alm: 0.64  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.24  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 16.0 %: cytoskeletal
	 16.0 %: cytoplasmic
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U02317-1 is nuc
VS (DIR, S) 3
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 5
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0