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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U13795-1
Contig ID Contig-U13795-1
Contig update 2002.12.18
Contig sequence 
>Contig-U13795-1 (Contig-U13795-1Q) /CSM_Contig/Contig-U13795-1Q.Seq.d
AAAAAAAATTCGAACAAATCTCATTTATTGTTATAATTTTATTATATAAT
TAAAATATAAAATAATAATATAATTTTACATATAATAAAACAAAAAATGA
ATAAGAAATCAGTAGCACCAATAAAAGCACCAACTGGTAAGAAATTAGTT
GGAGCCAAGAAAACCACAGCAACACCAGCTCCACTTGCAACTAAAAAAGT
TACCAAAACTGTTATCCCTTCAAAAAAACCAATTGTTCAAGAATCAGAAT
CAGAAGAAGAAGACTCTGACTTTGAAGAAGTTTCCTCTGAAACACCAACA
AAGAAATCAAAATTAATGGATTCAGATGATGATGAAGAAGAAGAATCAGA
TGATGATTTTAATAAAAAGAATACAAAAGGTTTTTCAGATGAAAATCAAA
AATGGTTAAAAATGAAAAATAAAGGAGAAGATGACGAAGATGAAGAAGAA
GAAGATGAAGAAGATTCTGATGATGATGATGAAAAAACTAATTTTGATAT
TCAAAGTAAAAAATTAGTTCAAAAGAAAAGAAAAGAAGAATTAGACAATA
TTAAAGAAATTCAAAGTGATTTTAATAAAGAGATACCAGAAGCAGATAAA
TTTGATCCAACACAAGGTGATCAATCATCAGANNNNNNNNN
Gap no gap
Contig length 641
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 4802979
End point 4802348
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U13795
List of clone(s) 

est1=VHP434F,1,632
Translated Amino Acid sequence 
kknsnkshlll*fyyiiki*NNNIILHIIKQKMNKKSVAPIKAPTGKKLVGAKKTTATPA
PLATKKVTKTVIPSKKPIVQESESEEEDSDFEEVSSETPTKKSKLMDSDDDEEEESDDDF
NKKNTKGFSDENQKWLKMKNKGEDDEDEEEEDEEDSDDDDEKTNFDIQSKKLVQKKRKEE
LDNIKEIQSDFNKEIPEADKFDPTQGDQSSXXX
Translated Amino Acid sequence (All Frames) 
Frame A:
kknsnkshlll*fyyiiki*NNNIILHIIKQKMNKKSVAPIKAPTGKKLVGAKKTTATPA
PLATKKVTKTVIPSKKPIVQESESEEEDSDFEEVSSETPTKKSKLMDSDDDEEEESDDDF
NKKNTKGFSDENQKWLKMKNKGEDDEDEEEEDEEDSDDDDEKTNFDIQSKKLVQKKRKEE
LDNIKEIQSDFNKEIPEADKFDPTQGDQSSXXX


Frame B:
kkirtnliycynfii*lkykiii*fyi**nkk*irnq*hq*khqlvrn*leprkpqqhql
hlqlkklpkllslqknqlfknqnqkkktltlkkfplkhqqrnqn*wiqmmmkkknqmmil
ikriqkvfqmkikng*k*kikekmtkmkkkkmkkilmmmmkklilifkvkn*fkrkekkn
*tilkkfkvilikryqkqinliqhkvinhqxxx


Frame C:
kkfeqisfiviillyn*nik**ynftynktkne*eisstnkstnw*eiswsqenhsntss
tcn*ksyqncypfkktncsririrrrrl*l*rsfl*ntnkeikingfr***rrrir**f*
*keykrffr*kskmvknek*rrr*rr*rrrr*rrf*****kn*f*ysk*kisskekkrri
rqy*rnsk*f**rdtrsr*i*sntr*siirxxx
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U13795-1 (Contig-U13795-1Q)
/CSM_Contig/Contig-U13795-1Q.Seq.d
         (641 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13795-1 (Contig-U13795-1Q) /CSM_Contig/Conti...   460  e-130
Contig-U13660-1 (Contig-U13660-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U12206-1 (Contig-U12206-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U11573-1 (Contig-U11573-1Q) /CSM_Contig/Conti...    42  7e-04
Contig-U05843-1 (Contig-U05843-1Q) /CSM_Contig/Conti...    42  7e-04
Contig-U02486-1 (Contig-U02486-1Q) /CSM_Contig/Conti...    42  7e-04
Contig-U14570-1 (Contig-U14570-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U12316-1 (Contig-U12316-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U12068-1 (Contig-U12068-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U11931-1 (Contig-U11931-1Q) /CSM_Contig/Conti...    40  0.003

>Contig-U13795-1 (Contig-U13795-1Q) /CSM_Contig/Contig-U13795-1Q.Seq.d
          Length = 641

 Score =  460 bits (232), Expect = e-130
 Identities = 246/253 (97%)
 Strand = Plus / Plus

                                                                       
Query: 104 agaaatcagtagcaccaataaaagcaccaactggtaagaaattagttggagccaagaaaa 163
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 agaaatcagtagcaccaataaaagcaccaactggtaagaaattagttggagccaagaaaa 163

                                                                       
Query: 164 ccacagcaacaccagctccacttgcaactaaaaaagttaccaaaactgttatcccttcnn 223
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 164 ccacagcaacaccagctccacttgcaactaaaaaagttaccaaaactgttatcccttcaa 223

                                                                       
Query: 224 nnnnnccaattgttcaagaatcagaatcagaagaagaagactctgactttgaagaagttt 283
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 aaaaaccaattgttcaagaatcagaatcagaagaagaagactctgactttgaagaagttt 283

                                                                       
Query: 284 cctctgaaacaccaacaaagaaatcaaaattaatggattcagatgatgatgaagaagaag 343
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 cctctgaaacaccaacaaagaaatcaaaattaatggattcagatgatgatgaagaagaag 343

                        
Query: 344 aatcagatgatga 356
           |||||||||||||
Sbjct: 344 aatcagatgatga 356


 Score =  184 bits (93), Expect = 8e-47
 Identities = 93/93 (100%)
 Strand = Plus / Plus

                                                                       
Query: 540 attagacaatattaaagaaattcaaagtgattttaataaagagataccagaagcagataa 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 attagacaatattaaagaaattcaaagtgattttaataaagagataccagaagcagataa 599

                                            
Query: 600 atttgatccaacacaaggtgatcaatcatcaga 632
           |||||||||||||||||||||||||||||||||
Sbjct: 600 atttgatccaacacaaggtgatcaatcatcaga 632


 Score = 38.2 bits (19), Expect = 0.011
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 484 aaaactaattttgatattc 502
           |||||||||||||||||||
Sbjct: 484 aaaactaattttgatattc 502


 Score = 30.2 bits (15), Expect = 2.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 331 gatgaagaagaagaa 345
           |||||||||||||||
Sbjct: 439 gatgaagaagaagaa 453


>Contig-U13660-1 (Contig-U13660-1Q) /CSM_Contig/Contig-U13660-1Q.Seq.d
          Length = 1113

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 324 agatgatgatgaagaagaagaa 345
           ||||||||||||||||||||||
Sbjct: 297 agatgatgatgaagaagaagaa 318


 Score = 34.2 bits (17), Expect = 0.18
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                
Query: 325 gatgatgatgaagaagaagaa 345
           |||||||| ||||||||||||
Sbjct: 301 gatgatgaagaagaagaagaa 321


 Score = 30.2 bits (15), Expect = 2.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 325 gatgatgatgaagaa 339
           |||||||||||||||
Sbjct: 553 gatgatgatgaagaa 567


>Contig-U12206-1 (Contig-U12206-1Q) /CSM_Contig/Contig-U12206-1Q.Seq.d
          Length = 993

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 324 agatgatgatgaagaagaagaa 345
           ||||||||||||||||||||||
Sbjct: 230 agatgatgatgaagaagaagaa 251


 Score = 40.1 bits (20), Expect = 0.003
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 325 gatgatgatgaagaagaagaatcagatgatga 356
           |||||||| ||||||||||||  |||||||||
Sbjct: 234 gatgatgaagaagaagaagaagaagatgatga 265


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8535
Number of Sequences: 6905
Number of extensions: 8535
Number of successful extensions: 1108
Number of sequences better than 10.0: 192
length of query: 641
length of database: 5,674,871
effective HSP length: 16
effective length of query: 625
effective length of database: 5,564,391
effective search space: 3477744375
effective search space used: 3477744375
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.14
Homology vs DNA 
Query= Contig-U13795-1 (Contig-U13795-1Q) /CSM_Contig/Contig-U13795-1Q.Seq.d
         (641 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ427101) Dictyostelium discoideum cDNA clone:ddv61d10, 5' ...   254   e-144  3
(FE055020) LV_ES_RA22P11f Litopenaeus vannamei eyestalk cDNA...    50   6e-05  2
(BE029844) kp35f06.y1 TBN95TM-SSFH Strongyloides stercoralis...    56   0.002  1
(DR523606) WS02715.B21_A11 SS-IL-A-FL-14 Picea sitchensis cD...    54   0.006  1
(DR467707) WS00941.B21_K17 IS-B-N-A-10 Picea engelmannii x P...    54   0.006  1
(FD733544) WS03820.C21_N03 SS-B-23 Picea sitchensis cDNA clo...    54   0.006  1
(EX435741) GQ03919.B7_L03 GQ039 - Stem - Dormant Picea glauc...    54   0.006  1
(EX435375) GQ03918.B7_L12 GQ039 - Stem - Dormant Picea glauc...    54   0.006  1
(EX397641) GQ03410.B7_O03 GQ034 - Needles - Mid-season Picea...    54   0.006  1
(EX397328) GQ03410.B7_A13 GQ034 - Needles - Mid-season Picea...    54   0.006  1
(EX367502) GQ03212.SP6_H17 GQ032 - Shoot tip (Normalized lib...    54   0.006  1
(EX367139) GQ03212.B7_H17 GQ032 - Shoot tip (Normalized libr...    54   0.006  1
(EX320896) GQ02816.SP6_L13 GQ028 - Cambium / phloem scrappin...    54   0.006  1
(EX320527) GQ02816.B7_L13 GQ028 - Cambium / phloem scrapping...    54   0.006  1
(AC179498) Strongylocentrotus purpuratus clone R3-1035J3, WO...    50   0.008  2
(EX893759) RS1CQ09JQ RS1(AR) Raphanus sativus var. oleiformi...    40   0.017  2
(EH431525) NPE00000134 Neocallimastix patriciarum ZAP II cDN...    42   0.044  2
(BM167080) EST569603 PyBS Plasmodium yoelii yoelii cDNA clon...    38   0.051  2
(BM165681) EST568204 PyBS Plasmodium yoelii yoelii cDNA clon...    38   0.053  2
(BM161761) EST564284 PyBS Plasmodium yoelii yoelii cDNA clon...    38   0.056  2
(FG013197) CBOT13323.fwd CBOT Phytophthora capsici LT1534 My...    42   0.056  2
(BM159831) EST562354 PyBS Plasmodium yoelii yoelii cDNA clon...    38   0.059  2
(EH469708) FDR103-P00034-DEPE-R_J12 FDR103 Danio rerio cDNA ...    44   0.061  2
(EJ606203) 1092962010690 Global-Ocean-Sampling_GS-29-01-01-1...    40   0.066  2
(EH596675) FDR306-P00003-DEPE-R_G19 FDR306 Danio rerio cDNA ...    44   0.067  2
(EH564840) FDR202-P00021-DEPE-R_N23 FDR202 Danio rerio cDNA ...    44   0.068  2
(EJ307072) 1095390102899 Global-Ocean-Sampling_GS-27-01-01-1...    40   0.069  2
(EJ641752) 1093011953705 Global-Ocean-Sampling_GS-29-01-01-1...    42   0.072  2
(BP189839) Dugesia japonica cDNA, clone: 02719_HH, expressed...    36   0.078  2
(EK431066) 1095516151701 Global-Ocean-Sampling_GS-31-01-01-1...    36   0.096  3
(U64206) Candida albicans hyphal wall protein 1 (HWP1) gene,...    50   0.099  1
(U29369) Candida albicans hyphal wall protein 1 (HWP1) mRNA,...    50   0.099  1
(AF001978) Candida albicans ECE2 gene, complete cds.               50   0.099  1
(EA265136) Sequence 150 from patent US 7241613.                    50   0.099  1
(EA265011) Sequence 25 from patent US 7241613.                     50   0.099  1
(CS444216) Sequence 11 from Patent WO2006109283.                   50   0.099  1
(CS444206) Sequence 1 from Patent WO2006109283.                    50   0.099  1
(AR547312) Sequence 2443 from patent US 6747137.                   50   0.099  1
(AC183498) Brassica oleracea, *** SEQUENCING IN PROGRESS ***.      50   0.099  1
(ED765599) GM_WBb0138F01.f GM_WBb Glycine max genomic clone ...    50   0.099  1
(ED702599) GM_WBb0045N14.r GM_WBb Glycine max genomic clone ...    50   0.099  1
(EV083928) BNSCS5CT_UP_089_B03_29MAY2007_029 Brassica napus ...    50   0.099  1
(ES988554) BNAEN1GH_UP_033_C01_21JUL2006_011 Brassica napus ...    50   0.099  1
(DY020218) 53COT5_T3_003_A03_28JUN2004_031 Brassica napus 36...    50   0.099  1
(CD843039) RFO2.130D17F011011 RFO2 Brassica napus cDNA clone...    50   0.099  1
(CD820369) BN20.052E14F011221 BN20 Brassica napus cDNA clone...    50   0.099  1
(BU927252) sas97d05.y1 Gm-c1036 Glycine max cDNA clone SOYBE...    50   0.099  1
(BG225413) kp67f09.y1 TBN95TM-SSFH Strongyloides stercoralis...    50   0.099  1
(BE609215) so03g03.y1 Gm-c1035 Glycine max cDNA clone GENOME...    50   0.099  1
(BE609207) so03f03.y1 Gm-c1035 Glycine max cDNA clone GENOME...    50   0.099  1
(BE029120) kp25b03.y1 TBN95TM-SSFH Strongyloides stercoralis...    50   0.099  1
(BE029031) kp24a02.y1 TBN95TM-SSFH Strongyloides stercoralis...    50   0.099  1
(FC821068) Sr_TOPOF_19o11_TOPOF S. ratti mixed stage TOPO St...    50   0.099  1
(EX114920) BR126439 normalized flower cDNA library NRFB Bras...    50   0.099  1
(EX102241) BR088531 seed and seedling cDNA library KFSD Bras...    50   0.099  1
(EX073330) BR057974 root cDNA library KBRT Brassica rapa sub...    50   0.099  1
(EX051346) BR035990 floral buds cDNA library KBFS Brassica r...    50   0.099  1
(BC075886) Danio rerio zgc:92086, mRNA (cDNA clone MGC:92086...    44   0.11   2
(BV009064) MASC_STS11916 Arabidopsis thaliana (Yosemite-0 ac...    42   0.13   2
(BV009127) MASC_STS11915 Arabidopsis thaliana (Wassilewskija...    42   0.14   2
(BV009126) MASC_STS11913 Arabidopsis thaliana (Eifel-2 acces...    42   0.14   2
(CV504727) 71292.1 Mixed Floral Solanum tuberosum cDNA clone...    46   0.17   2
(DR918754) EST1110293 Aquilegia cDNA library Aquilegia formo...    36   0.17   2
(ES221451) MpGV_ag3_J16 Myzus persicae, line G006, PLRV infe...    44   0.17   2
(DR914177) EST1105716 Aquilegia cDNA library Aquilegia formo...    36   0.19   2
(BM163971) EST566494 PyBS Plasmodium yoelii yoelii cDNA clon...    38   0.19   2
(AW221760) EST298571 tomato fruit red ripe, TAMU Solanum lyc...    42   0.20   2
(ER604656) 1093016267761 Global-Ocean-Sampling_GS-36-01-01-2...    36   0.20   2
(DT765895) EST1199744 Aquilegia cDNA library Aquilegia formo...    36   0.21   2
(CV490344) AGENCOURT_33237332 NIH_ZGC_15 Danio rerio cDNA cl...    42   0.23   2
(DT758714) EST1192563 Aquilegia cDNA library Aquilegia formo...    36   0.25   2
(DT730049) EST1163899 Aquilegia cDNA library Aquilegia formo...    36   0.25   2
(DT742469) EST1176318 Aquilegia cDNA library Aquilegia formo...    36   0.25   2
(FE170391) LV_LO_RA051K09r Litopenaeus vannamei lymphoid org...    44   0.29   2
(FE170637) LV_LO_RA051D23f Litopenaeus vannamei lymphoid org...    44   0.30   2
(FE170636) LV_LO_RA051B23r Litopenaeus vannamei lymphoid org...    44   0.30   2
(FE170390) LV_LO_RA051I09r Litopenaeus vannamei lymphoid org...    44   0.30   2
(FE085096) LV_GL_RA28L06f Litopenaeus vannamei gills cDNA li...    44   0.37   2
(FE085095) LV_GL_RA28J06r Litopenaeus vannamei gills cDNA li...    44   0.37   2
(EF216578) Phytophthora ramorum strain SCRP911 clone S21-22(...    44   0.37   2
(AM432356) Vitis vinifera contig VV78X013848.15, whole genom...    44   0.38   2
(EF117313) Etheostoma chermocki clone Eche002 microsatellite...    48   0.39   1
(AL400833) T3 end of clone AS0AA024B01 of library AS0AA from...    48   0.39   1
(EU365384) Solanum tuberosum cultivar Umatilla CRT binding f...    48   0.39   1
(DQ888317) Solanum tuberosum CBF2 mRNA, complete cds.              48   0.39   1
(DQ887515) Solanum tuberosum C-repeat binding factor 1 (CBF1...    48   0.39   1
(AM485426) Vitis vinifera contig VV78X085611.6, whole genome...    48   0.39   1
(AF351538) Gossypium hirsutum clone JESPR300 microsatellite ...    48   0.39   1
(AC215400) Solanum lycopersicum chromosome 2 clone C02HBa015...    48   0.39   1
(AC215364) Solanum lycopersicum chromosome 2 clone C02HBa003...    48   0.39   1
(AC189185) Brassica rapa subsp. pekinensis clone KBrB001H24,...    48   0.39   1
(AC134086) Rattus norvegicus clone CH230-429A14, *** SEQUENC...    48   0.39   1
(AC131505) Lytechinus variegatus clone Lv97A18, *** SEQUENCI...    48   0.39   1
(AC121654) Rattus norvegicus clone CH230-305D24, *** SEQUENC...    48   0.39   1
(AC096907) Rattus norvegicus clone CH230-172I22, *** SEQUENC...    48   0.39   1
(CU914428) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.39   1
(AC201545) Strongylocentrotus purpuratus clone R3-3103O05, W...    48   0.39   1
(AC184306) Strongylocentrotus purpuratus clone R3-4016H12, W...    48   0.39   1
(AC180098) Strongylocentrotus purpuratus clone R3-4007P8, WO...    48   0.39   1
(AC178252) Strongylocentrotus purpuratus clone R3-3086M20, W...    48   0.39   1

>(BJ427101) Dictyostelium discoideum cDNA clone:ddv61d10, 5' end,
           single read.
          Length = 632

 Score =  254 bits (128), Expect(3) = e-144
 Identities = 128/128 (100%)
 Strand = Plus / Plus


Query: 229 ccaattgttcaagaatcagaatcagaagaagaagactctgactttgaagaagtttcctct 288
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 ccaattgttcaagaatcagaatcagaagaagaagactctgactttgaagaagtttcctct 288


Query: 289 gaaacaccaacaaagaaatcaaaattaatggattcagatgatgatgaagaagaagaatca 348
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gaaacaccaacaaagaaatcaaaattaatggattcagatgatgatgaagaagaagaatca 348


Query: 349 gatgatga 356
           ||||||||
Sbjct: 349 gatgatga 356

 Score =  222 bits (112), Expect(3) = e-144
 Identities = 112/112 (100%)
 Strand = Plus / Plus


Query: 110 cagtagcaccaataaaagcaccaactggtaagaaattagttggagccaagaaaaccacag 169
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 cagtagcaccaataaaagcaccaactggtaagaaattagttggagccaagaaaaccacag 169


Query: 170 caacaccagctccacttgcaactaaaaaagttaccaaaactgttatcccttc 221
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 caacaccagctccacttgcaactaaaaaagttaccaaaactgttatcccttc 221

 Score = 97.6 bits (49), Expect(3) = e-144
 Identities = 49/49 (100%)
 Strand = Plus / Plus


Query: 584 taccagaagcagataaatttgatccaacacaaggtgatcaatcatcaga 632
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 taccagaagcagataaatttgatccaacacaaggtgatcaatcatcaga 632

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 404,281,484
Number of extensions: 33734234
Number of successful extensions: 2853750
Number of sequences better than 10.0: 1357
Length of query: 641
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 618
Effective length of database: 93,106,754,628
Effective search space: 57539974360104
Effective search space used: 57539974360104
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 8
Homology vs Protein 
Query= Contig-U13795-1 (Contig-U13795-1Q) /CSM_Contig/Contig-U13795-1Q.Seq.d
         (641 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000021_686(CP000021|pid:none) Vibrio fischeri ES114 chromosome...    35   1.9

>CP000021_686(CP000021|pid:none) Vibrio fischeri ES114 chromosome
           II, complete sequence.
          Length = 635

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 17/39 (43%), Positives = 26/39 (66%)
 Frame = +1

Query: 484 KTNFDIQSKKLVQKKRKEELDNIKEIQSDFNKEIPEADK 600
           KTN DI +K L Q++++++  N K  QSD NK+  E D+
Sbjct: 432 KTNLDIVNKALEQQQQQQQQQNDKNKQSDKNKDNKEQDQ 470

Lambda     K      H
   0.304    0.123    0.331

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 499,707,548
Number of extensions: 6633507
Number of successful extensions: 19197
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19187
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 1,051,180,864
Length adjustment: 123
Effective length of query: 90
Effective length of database: 653,084,107
Effective search space: 58777569630
Effective search space used: 58777569630
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.0 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.46  gvh: 0.19  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.00
 nuc: 0.15  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 24.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for Contig-U13795-1 is nuc
VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0