Contig-U13778-1
Contig ID Contig-U13778-1
Contig update 2002.12.18
Contig sequence
>Contig-U13778-1 (Contig-U13778-1Q) /CSM_Contig/Contig-U13778-1Q.Seq.d
GTCCACTCGATTGTTCGACACCAAATGGTACTTGTGATAATAATACTGGT
AATTGTACATGCCATAATGAACATTTTGGTAATGGTTGTGAATTCACTCA
ATGCCCACTCTATTGTTCAACACCAAATGGTACTTGTGATATTAATAGTG
GTATTTGTACATGTGATAATGAACATATTGGTAATGGTTGCGAAATTAAA
TTTATTGAATGTAAACATAAATGTTCAACCAAACATGGAATATGTGATAA
TGATAGTGGTAATTGTAAATGTGATACTCAAACAAAAGGATTAACGTGTG
AAGAATCAAGATTATTAATTGAATCATTAGACTCAACCAATTCAAAAGGT
GATATTGGTGAAGGTAAAGGTATTCATAATATTACAATCATTGATGATGA
CCTTTCGTTCACAGCAATCAATAAGTTCCAATATCTCGATGAAAAAACAA
AAATCTCAAAAATATCGAGAGGTGCAATTGCTGGTATTGTTGTTGGTTGT
GTTGTTGCTGTTTCATTAATTGGTTCTATTGCTTTTTATTATCATCACAA
AAATAAAAAGGTTATCTTTCTTCTAAAAACTAAAATACAATCTTNNCCAT
TANGTTTT

Gap no gap
Contig length 608
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 2707980
End point 2708590
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 2
Link to clone list U13778
List of clone(s)

est1=VHP314Z,-233,609
est2=VHO492Z,380,484
Translated Amino Acid sequence
PLDCSTPNGTCDNNTGNCTCHNEHFGNGCEFTQCPLYCSTPNGTCDINSGICTCDNEHIG
NGCEIKFIECKHKCSTKHGICDNDSGNCKCDTQTKGLTCEESRLLIESLDSTNSKGDIGE
GKGIHNITIIDDDLSFTAINKFQYLDEKTKISKISRGAIAGIVVGCVVAVSLIGSIAFYY
HHKNKKVIFLLKTKIQSXPLXF


Translated Amino Acid sequence (All Frames)
Frame A:
vhsivrhqmvlviiilvivhaimnilvmvvnslnahsivqhqmvlvilivvfvhvimnil
vmvaklnllnvninvqpnmeyvimivvivnvilkqkd*rvknqdy*lnh*tqpiqkvilv
kvkvfiilqslmmtfrsqqsissnismkkqksqkyrevqllvlllvvlllfh*lvlllfi
iitkikrlsff*klkynlxhxv


Frame B:
strlfdtkwyl***yw*lymp**tfw*wl*ihsmptllfntkwyl*y**wylym***tyw
*wlrn*iy*m*t*mfnqtwnm****w*l*m*ysnkrinv*rikiin*iirlnqfkr*yw*
r*rys*yynh***pfvhsnq*vpisr*knknlkniercncwyccwlccccfinwfycfll
ssqk*kgylsskn*ntixxixf


Frame C:
PLDCSTPNGTCDNNTGNCTCHNEHFGNGCEFTQCPLYCSTPNGTCDINSGICTCDNEHIG
NGCEIKFIECKHKCSTKHGICDNDSGNCKCDTQTKGLTCEESRLLIESLDSTNSKGDIGE
GKGIHNITIIDDDLSFTAINKFQYLDEKTKISKISRGAIAGIVVGCVVAVSLIGSIAFYY
HHKNKKVIFLLKTKIQSXPLXF


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U13778-1 (Contig-U13778-1Q)
/CSM_Contig/Contig-U13778-1Q.Seq.d
(608 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U13778-1 (Contig-U13778-1Q) /CSM_Contig/Conti... 874 0.0
Contig-U01123-1 (Contig-U01123-1Q) /CSM_Contig/Conti... 44 2e-04
Contig-U12390-1 (Contig-U12390-1Q) /CSM_Contig/Conti... 38 0.011
Contig-U07109-1 (Contig-U07109-1Q) /CSM_Contig/Conti... 38 0.011
Contig-U01680-1 (Contig-U01680-1Q) /CSM_Contig/Conti... 38 0.011
Contig-U14059-1 (Contig-U14059-1Q) /CSM_Contig/Conti... 36 0.042
Contig-U13338-1 (Contig-U13338-1Q) /CSM_Contig/Conti... 36 0.042
Contig-U11933-1 (Contig-U11933-1Q) /CSM_Contig/Conti... 36 0.042
Contig-U10784-1 (Contig-U10784-1Q) /CSM_Contig/Conti... 36 0.042
Contig-U11720-1 (Contig-U11720-1Q) /CSM_Contig/Conti... 30 2.6

>Contig-U13778-1 (Contig-U13778-1Q) /CSM_Contig/Contig-U13778-1Q.Seq.d
Length = 608

Score = 874 bits (441), Expect = 0.0
Identities = 441/441 (100%)
Strand = Plus / Plus


Query: 1 gtccactcgattgttcgacaccaaatggtacttgtgataataatactggtaattgtacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtccactcgattgttcgacaccaaatggtacttgtgataataatactggtaattgtacat 60


Query: 61 gccataatgaacattttggtaatggttgtgaattcactcaatgcccactctattgttcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gccataatgaacattttggtaatggttgtgaattcactcaatgcccactctattgttcaa 120


Query: 121 caccaaatggtacttgtgatattaatagtggtatttgtacatgtgataatgaacatattg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caccaaatggtacttgtgatattaatagtggtatttgtacatgtgataatgaacatattg 180


Query: 181 gtaatggttgcgaaattaaatttattgaatgtaaacataaatgttcaaccaaacatggaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtaatggttgcgaaattaaatttattgaatgtaaacataaatgttcaaccaaacatggaa 240


Query: 241 tatgtgataatgatagtggtaattgtaaatgtgatactcaaacaaaaggattaacgtgtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tatgtgataatgatagtggtaattgtaaatgtgatactcaaacaaaaggattaacgtgtg 300


Query: 301 aagaatcaagattattaattgaatcattagactcaaccaattcaaaaggtgatattggtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aagaatcaagattattaattgaatcattagactcaaccaattcaaaaggtgatattggtg 360


Query: 361 aaggtaaaggtattcataatattacaatcattgatgatgacctttcgttcacagcaatca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaggtaaaggtattcataatattacaatcattgatgatgacctttcgttcacagcaatca 420


Query: 421 ataagttccaatatctcgatg 441
|||||||||||||||||||||
Sbjct: 421 ataagttccaatatctcgatg 441


Score = 272 bits (137), Expect = 4e-73
Identities = 146/146 (100%)
Strand = Plus / Plus


Query: 463 tatcgagaggtgcaattgctggtattgttgttggttgtgttgttgctgtttcattaattg 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tatcgagaggtgcaattgctggtattgttgttggttgtgttgttgctgtttcattaattg 522


Query: 523 gttctattgctttttattatcatcacaaaaataaaaaggttatctttcttctaaaaacta 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gttctattgctttttattatcatcacaaaaataaaaaggttatctttcttctaaaaacta 582


Query: 583 aaatacaatcttnnccattangtttt 608
||||||||||||||||||||||||||
Sbjct: 583 aaatacaatcttnnccattangtttt 608


>Contig-U01123-1 (Contig-U01123-1Q) /CSM_Contig/Contig-U01123-1Q.Seq.d
Length = 1129

Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Minus


Query: 487 ttgttgttggttgtgttgttgctgtt 512
||||||||||||||| ||||||||||
Sbjct: 939 ttgttgttggttgtgatgttgctgtt 914


>Contig-U12390-1 (Contig-U12390-1Q) /CSM_Contig/Contig-U12390-1Q.Seq.d
Length = 1298

Score = 38.2 bits (19), Expect = 0.011
Identities = 22/23 (95%)
Strand = Plus / Plus


Query: 471 ggtgcaattgctggtattgttgt 493
|||||||||||||||||| ||||
Sbjct: 1136 ggtgcaattgctggtattattgt 1158


Score = 30.2 bits (15), Expect = 2.6
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 478 ttgctggtattgttg 492
|||||||||||||||
Sbjct: 1173 ttgctggtattgttg 1187


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,882
Number of Sequences: 6905
Number of extensions: 14882
Number of successful extensions: 1496
Number of sequences better than 10.0: 147
length of query: 608
length of database: 5,674,871
effective HSP length: 16
effective length of query: 592
effective length of database: 5,564,391
effective search space: 3294119472
effective search space used: 3294119472
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.14
Homology vs DNA
Query= Contig-U13778-1 (Contig-U13778-1Q) /CSM_Contig/Contig-U13778-1Q.Seq.d
(608 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ445946) Dictyostelium discoideum cDNA clone:ddv61l03, 3' ... 874 0.0 2
(BJ446789) Dictyostelium discoideum cDNA clone:ddv63h22, 3' ... 688 0.0 4
(BJ446630) Dictyostelium discoideum cDNA clone:ddv63g12, 3' ... 688 0.0 4
(BJ446427) Dictyostelium discoideum cDNA clone:ddv62n15, 3' ... 688 0.0 4
(BJ446355) Dictyostelium discoideum cDNA clone:ddv62o11, 3' ... 688 0.0 4
(BJ446323) Dictyostelium discoideum cDNA clone:ddv62j08, 3' ... 688 0.0 4
(BJ446255) Dictyostelium discoideum cDNA clone:ddv62k05, 3' ... 688 0.0 4
(BJ446250) Dictyostelium discoideum cDNA clone:ddv62j06, 3' ... 688 0.0 4
(BJ446052) Dictyostelium discoideum cDNA clone:ddv61a18, 3' ... 688 0.0 4
(BJ445753) Dictyostelium discoideum cDNA clone:ddv60d17, 3' ... 688 0.0 4
(BJ445705) Dictyostelium discoideum cDNA clone:ddv60i12, 3' ... 688 0.0 4
(BJ445553) Dictyostelium discoideum cDNA clone:ddv59g24, 3' ... 688 0.0 4
(BJ444797) Dictyostelium discoideum cDNA clone:ddv57a16, 3' ... 688 0.0 4
(BJ444630) Dictyostelium discoideum cDNA clone:ddv57a02, 3' ... 688 0.0 4
(BJ444524) Dictyostelium discoideum cDNA clone:ddv56l16, 3' ... 688 0.0 4
(BJ444497) Dictyostelium discoideum cDNA clone:ddv56f16, 3' ... 688 0.0 4
(BJ444465) Dictyostelium discoideum cDNA clone:ddv56o12, 3' ... 688 0.0 4
(BJ444453) Dictyostelium discoideum cDNA clone:ddv56m12, 3' ... 688 0.0 4
(BJ444419) Dictyostelium discoideum cDNA clone:ddv56g08, 3' ... 688 0.0 4
(BJ443937) Dictyostelium discoideum cDNA clone:ddv54m15, 3' ... 688 0.0 4
(BJ443905) Dictyostelium discoideum cDNA clone:ddv54e15, 3' ... 688 0.0 4
(BJ443898) Dictyostelium discoideum cDNA clone:ddv54c17, 3' ... 688 0.0 4
(BJ443436) Dictyostelium discoideum cDNA clone:ddv52m21, 3' ... 688 0.0 4
(BJ443076) Dictyostelium discoideum cDNA clone:ddv51g23, 3' ... 688 0.0 4
(BJ443064) Dictyostelium discoideum cDNA clone:ddv51e21, 3' ... 688 0.0 4
(BJ442988) Dictyostelium discoideum cDNA clone:ddv51f13, 3' ... 688 0.0 4
(BJ442848) Dictyostelium discoideum cDNA clone:ddv51l01, 3' ... 688 0.0 4
(BJ442667) Dictyostelium discoideum cDNA clone:ddv50i17, 3' ... 688 0.0 4
(BJ442661) Dictyostelium discoideum cDNA clone:ddv50h16, 3' ... 688 0.0 4
(BJ442604) Dictyostelium discoideum cDNA clone:ddv50l12, 3' ... 688 0.0 4
(BJ442511) Dictyostelium discoideum cDNA clone:ddv50i04, 3' ... 688 0.0 4
(BJ442263) Dictyostelium discoideum cDNA clone:ddv49h11, 3' ... 688 0.0 4
(BJ441858) Dictyostelium discoideum cDNA clone:ddv48h03, 3' ... 688 0.0 4
(BJ441604) Dictyostelium discoideum cDNA clone:ddv47a11, 3' ... 688 0.0 4
(BJ441375) Dictyostelium discoideum cDNA clone:ddv46c17, 3' ... 688 0.0 4
(BJ441344) Dictyostelium discoideum cDNA clone:ddv46n08, 3' ... 688 0.0 4
(BJ441328) Dictyostelium discoideum cDNA clone:ddv46j09, 3' ... 688 0.0 4
(BJ441300) Dictyostelium discoideum cDNA clone:ddv46e07, 3' ... 688 0.0 4
(BJ440018) Dictyostelium discoideum cDNA clone:ddv42k08, 3' ... 688 0.0 4
(BJ439507) Dictyostelium discoideum cDNA clone:ddv40n13, 3' ... 688 0.0 4
(BJ439244) Dictyostelium discoideum cDNA clone:ddv39h24, 3' ... 688 0.0 4
(BJ438586) Dictyostelium discoideum cDNA clone:ddv37j10, 3' ... 688 0.0 4
(BJ438489) Dictyostelium discoideum cDNA clone:ddv37h01, 3' ... 688 0.0 4
(BJ437590) Dictyostelium discoideum cDNA clone:ddv34a22, 3' ... 688 0.0 4
(BJ437465) Dictyostelium discoideum cDNA clone:ddv34i07, 3' ... 688 0.0 4
(BJ437312) Dictyostelium discoideum cDNA clone:ddv33j23, 3' ... 688 0.0 4
(BJ437133) Dictyostelium discoideum cDNA clone:ddv33f08, 3' ... 688 0.0 4
(BJ436905) Dictyostelium discoideum cDNA clone:ddv32h17, 3' ... 688 0.0 4
(BJ436773) Dictyostelium discoideum cDNA clone:ddv32n04, 3' ... 688 0.0 4
(BJ408551) Dictyostelium discoideum cDNA clone:dds46n06, 3' ... 688 0.0 4
(BJ375505) Dictyostelium discoideum cDNA clone:ddc19a02, 3' ... 688 0.0 4
(BJ356577) Dictyostelium discoideum cDNA clone:dda60c20, 3' ... 688 0.0 4
(BJ354376) Dictyostelium discoideum cDNA clone:dda53m08, 3' ... 688 0.0 4
(BJ353383) Dictyostelium discoideum cDNA clone:dda50a02, 3' ... 688 0.0 4
(BJ353197) Dictyostelium discoideum cDNA clone:dda49f09, 3' ... 688 0.0 4
(BJ352418) Dictyostelium discoideum cDNA clone:dda46n16, 3' ... 688 0.0 4
(BJ348719) Dictyostelium discoideum cDNA clone:dda34j05, 3' ... 688 0.0 4
(BJ346505) Dictyostelium discoideum cDNA clone:dda24l02, 3' ... 688 0.0 4
(BJ441906) Dictyostelium discoideum cDNA clone:ddv48a07, 3' ... 682 0.0 4
(BJ438817) Dictyostelium discoideum cDNA clone:ddv38g13, 3' ... 682 0.0 4
(BJ381508) Dictyostelium discoideum cDNA clone:ddc41b22, 3' ... 682 0.0 4
(BJ446212) Dictyostelium discoideum cDNA clone:ddv62c03, 3' ... 680 0.0 4
(BJ354630) Dictyostelium discoideum cDNA clone:dda54b10, 3' ... 680 0.0 4
(BJ445477) Dictyostelium discoideum cDNA clone:ddv59g17, 3' ... 688 0.0 4
(BJ442236) Dictyostelium discoideum cDNA clone:ddv49b11, 3' ... 688 0.0 4
(BJ446030) Dictyostelium discoideum cDNA clone:ddv61m10, 3' ... 688 0.0 4
(BJ441429) Dictyostelium discoideum cDNA clone:ddv46m18, 3' ... 688 0.0 4
(BJ442461) Dictyostelium discoideum cDNA clone:ddv49n24, 3' ... 680 0.0 4
(BJ400272) Dictyostelium discoideum cDNA clone:dds9d17, 3' e... 688 0.0 3
(BJ444724) Dictyostelium discoideum cDNA clone:ddv57c10, 3' ... 688 0.0 3
(BJ444126) Dictyostelium discoideum cDNA clone:ddv55h07, 3' ... 688 0.0 3
(BJ446437) Dictyostelium discoideum cDNA clone:ddv62a20, 3' ... 688 0.0 4
(BJ439311) Dictyostelium discoideum cDNA clone:ddv40f02, 3' ... 688 0.0 4
(BJ438247) Dictyostelium discoideum cDNA clone:ddv36h19, 3' ... 676 0.0 4
(BJ438768) Dictyostelium discoideum cDNA clone:ddv38m08, 3' ... 648 0.0 5
(BJ446619) Dictyostelium discoideum cDNA clone:ddv63e11, 3' ... 688 0.0 3
(BJ443167) Dictyostelium discoideum cDNA clone:ddv52i01, 3' ... 652 0.0 5
(BJ439002) Dictyostelium discoideum cDNA clone:ddv39k01, 3' ... 652 0.0 5
(BJ442253) Dictyostelium discoideum cDNA clone:ddv49f10, 3' ... 607 0.0 5
(BJ440231) Dictyostelium discoideum cDNA clone:ddv43e06, 3' ... 648 0.0 5
(BJ444210) Dictyostelium discoideum cDNA clone:ddv55j15, 3' ... 642 0.0 5
(BJ443337) Dictyostelium discoideum cDNA clone:ddv52j13, 3' ... 648 0.0 5
(BJ358070) Dictyostelium discoideum cDNA clone:dda65m14, 3' ... 648 0.0 5
(BJ437829) Dictyostelium discoideum cDNA clone:ddv35c13, 3' ... 648 0.0 5
(BJ439021) Dictyostelium discoideum cDNA clone:ddv39o02, 3' ... 656 0.0 5
(BJ438367) Dictyostelium discoideum cDNA clone:ddv37p13, 3' ... 648 0.0 5
(BJ440002) Dictyostelium discoideum cDNA clone:ddv42g10, 3' ... 674 0.0 4
(BJ443602) Dictyostelium discoideum cDNA clone:ddv53p12, 3' ... 688 0.0 4
(BJ439946) Dictyostelium discoideum cDNA clone:ddv42l02, 3' ... 652 0.0 5
(BJ350722) Dictyostelium discoideum cDNA clone:dda40f21, 3' ... 648 0.0 5
(BJ439904) Dictyostelium discoideum cDNA clone:ddv42c03, 3' ... 682 0.0 3
(BJ444258) Dictyostelium discoideum cDNA clone:ddv55e19, 3' ... 688 0.0 4
(BJ440742) Dictyostelium discoideum cDNA clone:ddv44h15, 3' ... 442 0.0 5
(BJ432075) Dictyostelium discoideum cDNA clone:ddv17e13, 3' ... 638 0.0 4
(BJ436106) Dictyostelium discoideum cDNA clone:ddv30a04, 3' ... 613 0.0 5
(AU284609) Dictyostelium discoideum gamete cDNA clone:FC-BE2... 688 0.0 4
(BJ380373) Dictyostelium discoideum cDNA clone:ddc37p22, 3' ... 674 0.0 3
(BJ440176) Dictyostelium discoideum cDNA clone:ddv42j23, 3' ... 664 0.0 4
(BJ445676) Dictyostelium discoideum cDNA clone:ddv60c11, 3' ... 688 0.0 3
(BJ351834) Dictyostelium discoideum cDNA clone:dda44c20, 3' ... 605 0.0 4

>(BJ445946) Dictyostelium discoideum cDNA clone:ddv61l03, 3' end,
single read.
Length = 843

Score = 874 bits (441), Expect(2) = 0.0
Identities = 441/441 (100%)
Strand = Plus / Minus


Query: 1 gtccactcgattgttcgacaccaaatggtacttgtgataataatactggtaattgtacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 gtccactcgattgttcgacaccaaatggtacttgtgataataatactggtaattgtacat 550


Query: 61 gccataatgaacattttggtaatggttgtgaattcactcaatgcccactctattgttcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 gccataatgaacattttggtaatggttgtgaattcactcaatgcccactctattgttcaa 490


Query: 121 caccaaatggtacttgtgatattaatagtggtatttgtacatgtgataatgaacatattg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 caccaaatggtacttgtgatattaatagtggtatttgtacatgtgataatgaacatattg 430


Query: 181 gtaatggttgcgaaattaaatttattgaatgtaaacataaatgttcaaccaaacatggaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gtaatggttgcgaaattaaatttattgaatgtaaacataaatgttcaaccaaacatggaa 370


Query: 241 tatgtgataatgatagtggtaattgtaaatgtgatactcaaacaaaaggattaacgtgtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tatgtgataatgatagtggtaattgtaaatgtgatactcaaacaaaaggattaacgtgtg 310


Query: 301 aagaatcaagattattaattgaatcattagactcaaccaattcaaaaggtgatattggtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 aagaatcaagattattaattgaatcattagactcaaccaattcaaaaggtgatattggtg 250


Query: 361 aaggtaaaggtattcataatattacaatcattgatgatgacctttcgttcacagcaatca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 aaggtaaaggtattcataatattacaatcattgatgatgacctttcgttcacagcaatca 190


Query: 421 ataagttccaatatctcgatg 441
|||||||||||||||||||||
Sbjct: 189 ataagttccaatatctcgatg 169

Score = 272 bits (137), Expect(2) = 0.0
Identities = 146/146 (100%)
Strand = Plus / Minus


Query: 463 tatcgagaggtgcaattgctggtattgttgttggttgtgttgttgctgtttcattaattg 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 tatcgagaggtgcaattgctggtattgttgttggttgtgttgttgctgtttcattaattg 88


Query: 523 gttctattgctttttattatcatcacaaaaataaaaaggttatctttcttctaaaaacta 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 gttctattgctttttattatcatcacaaaaataaaaaggttatctttcttctaaaaacta 28


Query: 583 aaatacaatcttnnccattangtttt 608
||||||||||||||||||||||||||
Sbjct: 27 aaatacaatcttnnccattangtttt 2

Score = 196 bits (99), Expect(2) = 7e-49
Identities = 142/157 (90%)
Strand = Plus / Minus


Query: 34 gtgataataatactggtaattgtacatgccataatgaacattttggtaatggttgtgaat 93
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 678 gtgataataatactggtaattgtacatgccataatgaacattttggtaattcttgngaat 619


Query: 94 tcactcaatgcccactctattgttcaacaccaaatggtacttgtgatattaatagtggta 153
| |||| | | |||||| ||||||| |||||||||||||||||||||| ||||| |||||
Sbjct: 618 ttactcgangtccactcgattgttcgacaccaaatggtacttgtgataataatactggta 559


Query: 154 tttgtacatgtgataatgaacatattggtaatggttg 190
||||||||| ||||||||||| |||||||||||||
Sbjct: 558 attgtacatgccataatgaacattttggtaatggttg 522

Score = 30.2 bits (15), Expect(2) = 7e-49
Identities = 17/18 (94%)
Strand = Plus / Minus


Query: 17 gacaccaaatggtacttg 34
|||||||||||| |||||
Sbjct: 696 gacaccaaatggnacttg 679

Score = 107 bits (54), Expect = 5e-19
Identities = 78/86 (90%)
Strand = Plus / Minus


Query: 3 ccactcgattgttcgacaccaaatggtacttgtgataataatactggtaattgtacatgc 62
|||||| ||||||| |||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 505 ccactctattgttcaacaccaaatggtacttgtgatattaatagtggtatttgtacatgt 446


Query: 63 cataatgaacattttggtaatggttg 88
||||||||||| |||||||||||||
Sbjct: 445 gataatgaacatattggtaatggttg 420

Score = 52.0 bits (26), Expect(4) = 7e-10
Identities = 44/50 (88%)
Strand = Plus / Minus


Query: 136 gtgatattaatagtggtatttgtacatgtgataatgaacatattggtaat 185
|||||| ||||| ||||| ||||||||| ||||||||||| ||||||||
Sbjct: 678 gtgataataatactggtaattgtacatgccataatgaacattttggtaat 629

Score = 34.2 bits (17), Expect(4) = 7e-10
Identities = 23/25 (92%)
Strand = Plus / Minus


Query: 243 tgtgataatgatagtggtaattgta 267
||||||||| ||| |||||||||||
Sbjct: 577 tgtgataataatactggtaattgta 553

Score = 28.2 bits (14), Expect(4) = 7e-10
Identities = 16/17 (94%)
Strand = Plus / Minus


Query: 120 acaccaaatggtacttg 136
||||||||||| |||||
Sbjct: 695 acaccaaatggnacttg 679

Score = 28.2 bits (14), Expect(4) = 7e-10
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 36 gataataatactgg 49
||||||||||||||
Sbjct: 790 gataataatactgg 777

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 693,051,711
Number of extensions: 45520429
Number of successful extensions: 3784330
Number of sequences better than 10.0: 296
Length of query: 608
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 585
Effective length of database: 93,106,754,628
Effective search space: 54467451457380
Effective search space used: 54467451457380
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 8
Homology vs Protein
Query= Contig-U13778-1 (Contig-U13778-1Q) /CSM_Contig/Contig-U13778-1Q.Seq.d
(608 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC117075_64(AC117075|pid:none) Dictyostelium discoideum chromoso... 67 3e-10
AC116963_42(AC116963|pid:none) Dictyostelium discoideum chromoso... 66 9e-10
AC116967_8(AC116967|pid:none) Dictyostelium discoideum chromosom... 63 6e-09
AC116956_34(AC116956|pid:none) Dictyostelium discoideum chromoso... 62 1e-08
AC116967_7(AC116967|pid:none) Dictyostelium discoideum chromosom... 61 2e-08
BC146386_1(BC146386|pid:none) Synthetic construct Homo sapiens c... 59 1e-07
(O75095) RecName: Full=Multiple epidermal growth factor-like dom... 59 1e-07
AC116960_61(AC116960|pid:none) Dictyostelium discoideum chromoso... 59 1e-07
AC116920_20(AC116920|pid:none) Dictyostelium discoideum chromoso... 59 1e-07
AX817295_1(AX817295|pid:none) Sequence 43 from Patent WO02081517. 57 3e-07
AX817297_1(AX817297|pid:none) Sequence 45 from Patent WO02081517. 57 3e-07
AB011539_1(AB011539|pid:none) Homo sapiens mRNA for MEGF6 protei... 57 3e-07
AC116100_9(AC116100|pid:none) Dictyostelium discoideum chromosom... 57 4e-07
AC117081_39(AC117081|pid:none) Dictyostelium discoideum chromoso... 57 4e-07
AC116920_24(AC116920|pid:none) Dictyostelium discoideum chromoso... 56 9e-07
AL032657_4(AL032657|pid:none) Caenorhabditis elegans YAC Y47H9C,... 55 2e-06
AL627123_1(AL627123|pid:none) Mouse DNA sequence from clone RP23... 54 3e-06
(Q80V70) RecName: Full=Multiple epidermal growth factor-like dom... 54 3e-06
AM463622_2(AM463622|pid:none) Vitis vinifera contig VV78X244153.... 54 3e-06
AK173032_1(AK173032|pid:none) Mus musculus mRNA for mKIAA0815 pr... 54 3e-06
AX463772_1(AX463772|pid:none) Sequence 35 from Patent WO0250111. 53 6e-06
(O15230) RecName: Full=Laminin subunit alpha-5; Flags: Precursor; 53 6e-06
AC116920_25(AC116920|pid:none) Dictyostelium discoideum chromoso... 53 6e-06
AF443072_1(AF443072|pid:none) Homo sapiens laminin alpha5 chain ... 53 6e-06
(Q9W7R4) RecName: Full=Teneurin-3; Short=Ten-3; AltName... 53 8e-06
BX324137_1(BX324137|pid:none) Zebrafish DNA sequence from clone ... 53 8e-06
CR954207_381(CR954207|pid:none) Ostreococcus tauri strain OTTH05... 52 2e-05
AC103550_20(AC103550|pid:none) Oryza sativa chromosome 3 BAC OSJ... 51 2e-05
AK176188_1(AK176188|pid:none) Arabidopsis thaliana mRNA for majo... 51 3e-05
AC117081_43(AC117081|pid:none) Dictyostelium discoideum chromoso... 51 3e-05
AB058677_1(AB058677|pid:none) Homo sapiens mRNA for MEGF11 prote... 50 5e-05
AB300051_1(AB300051|pid:none) Homo sapiens mRNA for MEGF11, comp... 50 5e-05
BC117419_1(BC117419|pid:none) Homo sapiens multiple EGF-like-dom... 50 5e-05
(Q8I7T3) RecName: Full=Substrate-adhesion molecule; Flags: Precu... 50 5e-05
AC115598_37(AC115598|pid:none) Dictyostelium discoideum chromoso... 50 6e-05
AM231718_1(AM231718|pid:none) Gallus gallus mRNA for tenascin-W ... 50 6e-05
AB052951_1(AB052951|pid:none) Homo sapiens mRNA for SRECRP-1, co... 50 6e-05
BC129830_1(BC129830|pid:none) Homo sapiens tenascin R (restricti... 49 8e-05
X98085_1(X98085|pid:none) H.sapiens mRNA for tenascin-R. 49 8e-05
AL110498_8(AL110498|pid:none) Caenorhabditis elegans YAC Y64G10A... 49 8e-05
AK295823_1(AK295823|pid:none) Homo sapiens cDNA FLJ60578 complet... 49 8e-05
(Q8BYI9) RecName: Full=Tenascin-R; Short=TN-R; AltName:... 49 8e-05
(Q05546) RecName: Full=Tenascin-R; Short=TN-R; AltName:... 49 8e-05
BC132392_1(BC132392|pid:none) Mus musculus tenascin R, mRNA (cDN... 49 8e-05
T27283(T27283)hypothetical protein Y64G10A.f - Caenorhabditis el... 49 8e-05
Z94055_1(Z94055|pid:none) Human DNA sequence from clone RP1-24M1... 49 8e-05
(P59222) RecName: Full=Scavenger receptor class F member 2; AltN... 49 1e-04
AF522196_1(AF522196|pid:none) Homo sapiens scavenger receptor ty... 49 1e-04
AL645912_4(AL645912|pid:none) Mouse DNA sequence from clone RP23... 49 1e-04
(Q9DER5) RecName: Full=Teneurin-2; Short=Ten-2; AltName... 49 1e-04
BC141361_1(BC141361|pid:none) Mus musculus odd Oz/ten-m homolog ... 49 1e-04
AK160406_1(AK160406|pid:none) Mus musculus adult male cerebellum... 49 1e-04
AK148084_1(AK148084|pid:none) Mus musculus B16 F10Y cells cDNA, ... 49 1e-04
(Q96KG7) RecName: Full=Multiple epidermal growth factor-like dom... 49 1e-04
AJ245710_1(AJ245710|pid:none) Mus musculus partial mRNA for tene... 49 1e-04
CR749437_1(CR749437|pid:none) Homo sapiens mRNA; cDNA DKFZp781K1... 49 1e-04
BX890618_1(BX890618|pid:none) Zebrafish DNA sequence from clone ... 48 2e-04
AF086609_1(AF086609|pid:none) Rattus norvegicus neurestin gamma ... 48 2e-04
AF086610_1(AF086610|pid:none) Rattus norvegicus neurestin delta ... 48 2e-04
BX088690_1(BX088690|pid:none) Zebrafish DNA sequence from clone ... 48 2e-04
U00046_2(U00046|pid:none) Caenorhabditis elegans cosmid R13F6, c... 48 2e-04
AB206835_1(AB206835|pid:none) Caenorhabditis elegans ten-1 mRNA ... 48 2e-04
T16743(T16743)hypothetical protein R13F6.4 - Caenorhabditis eleg... 48 2e-04
U00046_1(U00046|pid:none) Caenorhabditis elegans cosmid R13F6, c... 48 2e-04
AK051642_1(AK051642|pid:none) Mus musculus 12 days embryo spinal... 48 2e-04
AX250013_1(AX250013|pid:none) Sequence 12 from Patent WO0166747.... 47 3e-04
(Q9WTS5) RecName: Full=Teneurin-2; Short=Ten-2; AltName... 47 3e-04
BC172353_1(BC172353|pid:none) Synthetic construct Homo sapiens c... 47 3e-04
AB032953_1(AB032953|pid:none) Homo sapiens mRNA for KIAA1127 pro... 47 3e-04
AK122555_1(AK122555|pid:none) Mus musculus mRNA for mKIAA1781 pr... 47 4e-04
Y12539_1(Y12539|pid:none) Branchiostoma floridae mRNA for putati... 47 4e-04
L07288_1(L07288|pid:none) Drosophila melanogaster laminin A (Lam... 47 4e-04
(Q80T91) RecName: Full=Multiple epidermal growth factor-like dom... 47 4e-04
AB001074_1(AB001074|pid:none) Caenorhabditis elegans mRNA for la... 47 4e-04
CR759822_3(CR759822|pid:none) Zebrafish DNA sequence from clone ... 47 4e-04
AX392975_1(AX392975|pid:none) Sequence 17 from Patent WO0214358.... 47 4e-04
Z70286_4(Z70286|pid:none) Caenorhabditis elegans Cosmid K08C7, c... 47 4e-04
(Q21313) RecName: Full=Laminin-like protein epi-1; Flags: Precur... 47 4e-04
AE014296_1167(AE014296|pid:none) Drosophila melanogaster chromos... 47 5e-04
M96388_1(M96388|pid:none) Drosophila melanogaster laminin A chai... 47 5e-04
AF151717_1(AF151717|pid:none) Mus musculus putative extracellula... 47 5e-04
BT032866_1(BT032866|pid:none) Drosophila melanogaster SD07123 fu... 47 5e-04
(Q2QI47) RecName: Full=Usherin; AltName: Full=Usher syndrome typ... 47 5e-04
(Q00174) RecName: Full=Laminin subunit alpha; Short=Lam... 47 5e-04
BC140783_1(BC140783|pid:none) Homo sapiens odz, odd Oz/ten-m hom... 46 7e-04
AF091889_1(AF091889|pid:none) Homo sapiens Usher syndrome type I... 46 7e-04
AF100772_1(AF100772|pid:none) Homo sapiens tenascin-M1 (TNM1) mR... 46 7e-04
BC144543_1(BC144543|pid:none) Homo sapiens odz, odd Oz/ten-m hom... 46 7e-04
BX537264_1(BX537264|pid:none) Zebrafish DNA sequence from clone ... 46 7e-04
CR383662_1(CR383662|pid:none) Zebrafish DNA sequence from clone ... 46 7e-04
CP001323_444(CP001323|pid:none) Micromonas sp. RCC299 chromosome... 46 0.001
AF008227_1(AF008227|pid:none) Drosophila melanogaster odd Oz pro... 46 0.001
(Q9WTS4) RecName: Full=Teneurin-1; Short=Ten-1; AltName... 46 0.001
AE014296_3877(AE014296|pid:none) Drosophila melanogaster chromos... 46 0.001
A54148(A54148)odz protein - fruit fly (Drosophila sp.) 46 0.001
AE014296_3878(AE014296|pid:none) Drosophila melanogaster chromos... 46 0.001
DQ900934_1(DQ900934|pid:none) Ciona intestinalis gamma-carboxygl... 45 0.001
X56811_1(X56811|pid:none) D.melanogaster Serrate mRNA for EGF-li... 45 0.002
(P18168) RecName: Full=Serrate protein; AltName: Full=Protein be... 45 0.002
AY128478_1(AY128478|pid:none) Drosophila melanogaster RE42104 fu... 45 0.002
S16148(S16148;S16878;A36666)gene serrate protein precursor - fru... 45 0.002
AE014297_4255(AE014297|pid:none) Drosophila melanogaster chromos... 45 0.002
(Q6N022) RecName: Full=Teneurin-4; Short=Ten-4; AltName... 45 0.002
(Q9W7R3) RecName: Full=Teneurin-4; Short=Ten-4; AltName... 45 0.002
AB010266_2(AB010266|pid:none) Mus musculus Creb-rp, Tnx, Cyp21 g... 45 0.002
(P13508) RecName: Full=Protein glp-1; Flags: Precursor; &A32901... 45 0.002
CR926086_1(CR926086|pid:none) Pongo abelii mRNA; cDNA DKFZp459N0... 44 0.003
AY327116_1(AY327116|pid:none) Homo sapiens laminin alpha 3 splic... 44 0.003
(Q16787) RecName: Full=Laminin subunit alpha-3; AltName: Full=Ep... 44 0.003
CT025750_1(CT025750|pid:none) Zebrafish DNA sequence from clone ... 44 0.003
Y10354_1(Y10354|pid:none) D.rerio notch6 mRNA. 44 0.003
(P98157) RecName: Full=Low-density lipoprotein receptor-related ... 44 0.003
EF444992_1(EF444992|pid:none) Homo sapiens laminin alpha-3 chain... 44 0.003
AB025413_1(AB025413|pid:none) Mus musculus mRNA for Ten-m4, comp... 44 0.004
(Q9NZR2) RecName: Full=Low-density lipoprotein receptor-related ... 44 0.004
AB209707_1(AB209707|pid:none) Homo sapiens mRNA for low density ... 44 0.004
(Q9P273) RecName: Full=Teneurin-3; Short=Ten-3; AltName... 44 0.004
BC144305_1(BC144305|pid:none) Homo sapiens cDNA clone MGC:177842... 44 0.004
AF195418_1(AF195418|pid:none) Mus musculus ODZ3 (Odz3) mRNA, par... 44 0.004
(Q3UHK6) RecName: Full=Teneurin-4; Short=Ten-4; AltName... 44 0.004
AC092156_1(AC092156|pid:none) Homo sapiens BAC clone RP11-326J14... 44 0.004
BC172899_1(BC172899|pid:none) Synthetic construct Homo sapiens c... 44 0.004
AK127044_1(AK127044|pid:none) Homo sapiens cDNA FLJ45101 fis, cl... 44 0.004
(Q9WTS6) RecName: Full=Teneurin-3; Short=Ten-3; AltName... 44 0.004
AL049689_1(AL049689|pid:none) Novel human mRNA from chromosome 1... 44 0.004
CP000587_387(CP000587|pid:none) Ostreococcus lucimarinus CCE9901... 44 0.004
AL807754_1(AL807754|pid:none) Zebrafish DNA sequence from clone ... 44 0.004
AK147329_1(AK147329|pid:none) Mus musculus cDNA, RIKEN full-leng... 44 0.004
(Q9UQP3) RecName: Full=Tenascin-N; Short=TN-N; Flags: P... 44 0.004
X84014_1(X84014|pid:none) M.musculus mRNA for laminin-5, alpha3B... 44 0.005
(Q9W6V6) RecName: Full=Teneurin-1; Short=Ten-1; AltName... 44 0.005
AK134303_1(AK134303|pid:none) Mus musculus 13 days embryo male t... 44 0.005
(Q8K3K1) RecName: Full=Usherin; AltName: Full=Usher syndrome typ... 44 0.005
(Q61789) RecName: Full=Laminin subunit alpha-3; AltName: Full=Ni... 44 0.005
BC058571_1(BC058571|pid:none) Mus musculus multiple EGF-like-dom... 44 0.005
AB052948_1(AB052948|pid:none) Homo sapiens mRNA for SREC-3, comp... 43 0.006
AB052949_1(AB052949|pid:none) Homo sapiens mRNA for SREC-4, comp... 43 0.006
AE014298_1834(AE014298|pid:none) Drosophila melanogaster chromos... 43 0.006
AK291810_1(AK291810|pid:none) Homo sapiens cDNA FLJ78719 complet... 43 0.006
X68794_1(X68794|pid:none) Drosophila melanogaster mRNA for type ... 43 0.006
BC146617_1(BC146617|pid:none) Xenopus tropicalis odz, odd Oz/ten... 43 0.006
AB052950_1(AB052950|pid:none) Homo sapiens mRNA for SREC-5, comp... 43 0.006
AL834326_1(AL834326|pid:none) Homo sapiens mRNA; cDNA DKFZp434L1... 43 0.006
CR857924_1(CR857924|pid:none) Pongo abelii mRNA; cDNA DKFZp469E0... 43 0.008
(Q9UMG7) RecName: Full=Tenascin-X; Short=TN-X; AltName:... 43 0.008
AL049547_2(AL049547|pid:none) Human DNA sequence from clone RP1-... 43 0.008
AL645922_24(AL645922|pid:none) Human DNA sequence from clone XXb... 43 0.008
AE014296_355(AE014296|pid:none) Drosophila melanogaster chromoso... 43 0.008
X71923_1(X71923|pid:none) H.sapiens XB gene for tenascin-X, exon... 43 0.008
AF145617_1(AF145617|pid:none) Drosophila melanogaster clone GH03... 43 0.008
AB208796_1(AB208796|pid:none) Homo sapiens mRNA for TEK tyrosine... 42 0.010
CR858004_1(CR858004|pid:none) Pongo abelii mRNA; cDNA DKFZp469L1... 42 0.010
BC035514_1(BC035514|pid:none) Homo sapiens TEK tyrosine kinase, ... 42 0.010
AB384733_1(AB384733|pid:none) Synthetic construct DNA, clone: pF... 42 0.010
BX897725_5(BX897725|pid:none) Zebrafish DNA sequence from clone ... 42 0.010
(Q02763) RecName: Full=Angiopoietin-1 receptor; EC=2.7.... 42 0.010
CS237415_1(CS237415|pid:none) Sequence 130 from Patent WO2005113... 42 0.010
AX398352_1(AX398352|pid:none) Sequence 1 from Patent WO0220734. ... 42 0.010
AX671052_1(AX671052|pid:none) Sequence 7 from Patent WO03004529.... 42 0.014
EU152252_1(EU152252|pid:none) Hydra vulgaris notch mRNA, complet... 42 0.014
AL772277_3(AL772277|pid:none) Mouse DNA sequence from clone RP23... 42 0.014
AF074902_1(AF074902|pid:none) Caenorhabditis elegans laminin alp... 42 0.014
(Q02858) RecName: Full=Angiopoietin-1 receptor; EC=2.7.... 42 0.014
BC122579_1(BC122579|pid:none) Bos taurus TEK tyrosine kinase, en... 42 0.014
AL929049_5(AL929049|pid:none) Zebrafish DNA sequence from clone ... 42 0.014
AK294887_1(AK294887|pid:none) Homo sapiens cDNA FLJ58359 complet... 42 0.014
AB086825_1(AB086825|pid:none) Homo sapiens Tie-2 mRNA for recept... 42 0.014
(Q06807) RecName: Full=Angiopoietin-1 receptor; EC=2.7.... 42 0.014
F87908(F87908;E87908) protein T22A3.8 [imported] - Caenorhabditi... 42 0.014
X67553_1(X67553|pid:none) M. musculus mRNA for tek. 42 0.014
BC117624_1(BC117624|pid:none) Danio rerio delta-like 4 (Drosophi... 42 0.014
AB210518_1(AB210518|pid:none) Ciona intestinalis mRNA for jagged... 42 0.018
BC088400_1(BC088400|pid:none) Rattus norvegicus laminin, beta 2,... 42 0.018
(P02468) RecName: Full=Laminin subunit gamma-1; AltName: Full=La... 42 0.018
AL773560_5(AL773560|pid:none) Pig DNA sequence from clone PigI-5... 42 0.018
A55677(A55677)laminin beta-2 chain precursor (version 1) - human 42 0.018
AE014134_2523(AE014134|pid:none) Drosophila melanogaster chromos... 42 0.018
AX045123_1(AX045123|pid:none) Sequence 31 from Patent WO0066730.... 42 0.018
CR954216_234(CR954216|pid:none) Ostreococcus tauri strain OTTH05... 42 0.018
AK074051_1(AK074051|pid:none) Homo sapiens mRNA for FLJ00122 pro... 42 0.018
AB210365_1(AB210365|pid:none) Ciona intestinalis mRNA for delta ... 42 0.018
AJ295695_1(AJ295695|pid:none) Homo sapiens mRNA for stabilin-2 (... 42 0.018
X79683_1(X79683|pid:none) H.sapiens LAMB2 mRNA for beta2 laminin. 42 0.018
AK074062_1(AK074062|pid:none) Homo sapiens mRNA for FLJ00133 pro... 42 0.018
AX045121_1(AX045121|pid:none) Sequence 29 from Patent WO0066730.... 42 0.018
AJ566620_1(AJ566620|pid:none) Paramecium tetraurelia macronuclea... 42 0.018
AB052958_1(AB052958|pid:none) Homo sapiens mRNA for FELE-2, comp... 42 0.018
(Q8WWQ8) RecName: Full=Stabilin-2; AltName: Full=Fasciclin, EGF-... 42 0.018
(Q80YX1) RecName: Full=Tenascin; Short=TN; AltName: Ful... 41 0.023
M33753_1(M33753|pid:none) D.melanogaster crumbs protein mRNA, co... 41 0.023
A48825(A48825)Notch homolog Motch protein - mouse (fragment) 41 0.023
S18188(S18188)notch protein homolog - rat 41 0.023
AL591496_16(AL591496|pid:none) Mouse DNA sequence from clone RP2... 41 0.023
AB100603_1(AB100603|pid:none) Mus musculus Notch1 gene for trans... 41 0.023
(P10040) RecName: Full=Protein crumbs; AltName: Full=95F; Flags:... 41 0.023
AL732556_3(AL732556|pid:none) Mouse DNA sequence from clone RP24... 41 0.023
DQ786775_1(DQ786775|pid:none) Mus musculus FEX2 mRNA, complete c... 41 0.023
AB100603_2(AB100603|pid:none) Mus musculus Notch1 gene for trans... 41 0.023
(Q01705) RecName: Full=Neurogenic locus notch homolog protein 1;... 41 0.023
AL732556_1(AL732556|pid:none) Mouse DNA sequence from clone RP24... 41 0.023
AF508809_1(AF508809|pid:none) Mus musculus notch 1 protein mRNA,... 41 0.023
AL591496_15(AL591496|pid:none) Mouse DNA sequence from clone RP2... 41 0.023
AB210038_1(AB210038|pid:none) Homo sapiens mRNA for TNC variant ... 41 0.030
AY862413_1(AY862413|pid:none) Danio rerio laminin alpha 1 mRNA, ... 41 0.030
(P24821) RecName: Full=Tenascin; Short=TN; AltName: Ful... 41 0.030
(Q9QYP0) RecName: Full=Multiple epidermal growth factor-like dom... 41 0.030
AJ437480_3(AJ437480|pid:none) Paramecium tetraurelia partial npe... 41 0.030
X56160_1(X56160|pid:none) Human mRNA for tenascin. 41 0.030
BC151843_1(BC151843|pid:none) Homo sapiens tenascin C, mRNA (cDN... 41 0.030
AJ291489_1(AJ291489|pid:none) Paracentrotus lividus mRNA for fib... 41 0.030
AK304015_1(AK304015|pid:none) Homo sapiens cDNA FLJ60213 complet... 41 0.030
AF491458_1(AF491458|pid:none) Caenorhabditis briggsae strain PB8... 40 0.039
BC049872_1(BC049872|pid:none) Mus musculus FAT tumor suppressor ... 40 0.039
AF491459_1(AF491459|pid:none) Caenorhabditis briggsae strain HK1... 40 0.039
AY630342_1(AY630342|pid:none) Manduca sexta plasmatocyte-specifi... 40 0.039
BC084953_1(BC084953|pid:none) Xenopus laevis X-Serrate-1 protein... 40 0.039
AF491460_1(AF491460|pid:none) Caenorhabditis briggsae strain AF1... 40 0.039
AB011541_1(AB011541|pid:none) Homo sapiens mRNA for MEGF8, parti... 40 0.039
AF491463_1(AF491463|pid:none) Caenorhabditis briggsae strain VT8... 40 0.039
(P15800) RecName: Full=Laminin subunit beta-2; AltName: Full=S-l... 40 0.039
AY751775_1(AY751775|pid:none) Xenopus laevis alpha2-macroglobuli... 40 0.039
(Q8R4Y4) RecName: Full=Stabilin-1; AltName: Full=Fasciclin, EGF-... 40 0.039
AX133531_1(AX133531|pid:none) Sequence 1 from Patent WO0131011. 40 0.039
BC100554_1(BC100554|pid:none) Mus musculus FAT tumor suppressor ... 40 0.039
DQ131910_1(DQ131910|pid:none) Danio rerio laminin alpha 1 mRNA, ... 40 0.039
AF315555_1(AF315555|pid:none) Caenorhabditis briggsae notch-like... 40 0.039
BC142880_1(BC142880|pid:none) Danio rerio similar to alpha-2-mac... 40 0.039
AE014296_356(AE014296|pid:none) Drosophila melanogaster chromoso... 40 0.051
BC165945_1(BC165945|pid:none) Synthetic construct Mus musculus c... 40 0.051
AB209873_1(AB209873|pid:none) Homo sapiens mRNA for notch1 prepr... 40 0.051
BT072095_1(BT072095|pid:none) Salmo salar clone ssal-rgf-511-120... 40 0.051
AF308602_1(AF308602|pid:none) Homo sapiens NOTCH 1 (N1) mRNA, co... 40 0.051
BC172774_1(BC172774|pid:none) Synthetic construct Homo sapiens c... 40 0.051
X58531_1(X58531|pid:none) Human LAMA mRNA for laminin A chain, p... 40 0.051
BC067552_1(BC067552|pid:none) Danio rerio integrin, beta 1b.2, m... 40 0.051
(Q14517) RecName: Full=Protocadherin Fat 1; AltName: Full=Cadher... 40 0.051
(P46531) RecName: Full=Neurogenic locus notch homolog protein 1;... 40 0.051
BC155681_1(BC155681|pid:none) Xenopus tropicalis hypothetical pr... 40 0.051
DQ917572_1(DQ917572|pid:none) Parhyale hawaiensis notch protein ... 40 0.067
AF172277_3(AF172277|pid:none) Homo sapiens 7q31 clones RP11-267O... 40 0.067
AF028816_1(AF028816|pid:none) Homo sapiens laminin beta-4 chain ... 40 0.067
BC142619_1(BC142619|pid:none) Homo sapiens laminin, beta 4, mRNA... 40 0.067
(Q9NR61) RecName: Full=Delta-like protein 4; AltName: Full=Droso... 40 0.067
M24630_1(M24630|pid:none) Human hexabrachion mRNA, partial cds. 40 0.067
AB001327_1(AB001327|pid:none) Halocynthia roretzi mRNA for HrNot... 40 0.067
(Q04721) RecName: Full=Neurogenic locus notch homolog protein 2;... 40 0.067
AF308601_1(AF308601|pid:none) Homo sapiens NOTCH 2 (N2) mRNA, co... 40 0.067
AK300385_1(AK300385|pid:none) Homo sapiens cDNA FLJ61398 complet... 40 0.067
AL035436_2(AL035436|pid:none) Drosophila melanogaster cosmid clo... 40 0.067
AX357059_1(AX357059|pid:none) Sequence 21 from Patent EP1175909.... 40 0.067
AF056116_15(AF056116|pid:none) Fugu rubripes serine/threonine ki... 40 0.067
(A4D0S4) RecName: Full=Laminin subunit beta-4; AltName: Full=Lam... 40 0.067
M16152_1(M16152|pid:none) Drosophila melanogaster Notch growth f... 40 0.067
BC168665_1(BC168665|pid:none) Rattus norvegicus platelet endothe... 40 0.067
AF060203_1(AF060203|pid:none) Biomphalaria glabrata beta integri... 39 0.088
EU649699_1(EU649699|pid:none) Bombyx mori delta protein mRNA, pa... 39 0.088
AJ580920_1(AJ580920|pid:none) Mus musculus mRNA for tenascin-W p... 39 0.088
AJ275213_1(AJ275213|pid:none) Homo sapiens mRNA for stabilin-1 (... 39 0.088
AB052956_1(AB052956|pid:none) Homo sapiens mRNA for FELE-1, comp... 39 0.088
CP000595_188(CP000595|pid:none) Ostreococcus lucimarinus CCE9901... 39 0.088
U91851_1(U91851|pid:none) Gallus gallus serrate-2 mRNA, partial ... 39 0.088
AY805407_1(AY805407|pid:none) Danio rerio notch1b mRNA, complete... 39 0.088
AX079975_1(AX079975|pid:none) Sequence 9 from Patent WO0105825. 39 0.088
(Q80Z71) RecName: Full=Tenascin-N; Short=TN-N; Flags: P... 39 0.088
AF463419_1(AF463419|pid:none) Naegleria gruberi basal body prote... 39 0.088
I50719(I50719) C-Delta-1 - chicken &U26590_1(U26590|pid:none) 39 0.088
(Q6V0I7) RecName: Full=Protocadherin Fat 4; Short=hFat4... 39 0.088
D87558_1(D87558|pid:none) Gallus gallus mRNA for C-Serrate-2, pa... 39 0.088
A35844(A35844)Xotch protein - African clawed frog 39 0.088
(P21783) RecName: Full=Neurogenic locus notch protein homolog; ... 39 0.088
AB220440_1(AB220440|pid:none) Macaca fascicularis mRNA, clone Qc... 39 0.088
EU596506_1(EU596506|pid:none) Rattus norvegicus tenascin C (Tnc)... 39 0.088
AB073427_1(AB073427|pid:none) Ciona savignyi mRNA for Delta, com... 39 0.088
BC138335_1(BC138335|pid:none) Mus musculus tenascin N, mRNA (cDN... 39 0.088
T34513(T34513)hypothetical protein ZK783.1 - Caenorhabditis eleg... 39 0.088
Z68155_1(Z68155|pid:none) Homo sapiens LAMB2 gene for laminin be... 39 0.088
DQ786774_1(DQ786774|pid:none) Homo sapiens FEX1 mRNA, complete c... 39 0.088
L42229_1(L42229|pid:none) Xenopus laevis X-Delta-1 gene, complet... 39 0.11
FJ222590_1(FJ222590|pid:none) Periplaneta americana Delta protei... 39 0.11
(P46530) RecName: Full=Neurogenic locus notch homolog protein 1;... 39 0.11
AE014134_1265(AE014134|pid:none) Drosophila melanogaster chromos... 39 0.11
BC020198_1(BC020198|pid:none) Homo sapiens multiple EGF-like-dom... 39 0.11
BC017134_1(BC017134|pid:none) Mus musculus EGF, latrophilin seve... 39 0.11
AF385682_1(AF385682|pid:none) Mus musculus ETL1 mRNA, complete c... 39 0.11
AB095016_1(AB095016|pid:none) Cynops pyrrhogaster Notch-1 mRNA f... 39 0.11
FN357317_8(FN357317|pid:none) Schistosoma mansoni genome sequenc... 39 0.11
BC026051_1(BC026051|pid:none) Mus musculus laminin, beta 2, mRNA... 39 0.11
AF239608_1(AF239608|pid:none) Drosophila melanogaster SP1070 mRN... 39 0.11
(Q1LVF0) RecName: Full=Laminin subunit gamma-1; Flags: Precursor... 39 0.15
BC162468_1(BC162468|pid:none) Danio rerio jagged 1a, mRNA (cDNA ... 39 0.15
AF468048_1(AF468048|pid:none) Danio rerio laminin gamma 1 (lamc1... 39 0.15
AX045119_1(AX045119|pid:none) Sequence 27 from Patent WO0066730. 39 0.15
AX045117_1(AX045117|pid:none) Sequence 25 from Patent WO0066730. 39 0.15
CU138540_8(CU138540|pid:none) Zebrafish DNA sequence from clone ... 39 0.15
X08030_1(X08030|pid:none) Chicken mRNA fragment for tenascin (cT... 39 0.15
AL845481_1(AL845481|pid:none) Zebrafish DNA sequence from clone ... 39 0.15
AB385108_1(AB385108|pid:none) Synthetic construct DNA, clone: pF... 39 0.15
CR940348_368(CR940348|pid:none) Theileria annulata strain Ankara... 39 0.15
BX649457_6(BX649457|pid:none) Zebrafish DNA sequence from clone ... 39 0.15
DQ440587_1(DQ440587|pid:none) Danio rerio truncated integrin bet... 39 0.15
L33861_1(L33861|pid:none) Sea urchin fibropellin Ia mRNA, 3' end. 39 0.15
AF224337_1(AF224337|pid:none) Ictalurus punctatus beta-1 integri... 39 0.15
BC068426_1(BC068426|pid:none) Danio rerio laminin, gamma 1, mRNA... 39 0.15
AY118509_1(AY118509|pid:none) Drosophila melanogaster LD13435 fu... 39 0.15
BC135592_1(BC135592|pid:none) Xenopus tropicalis delta-like 1, m... 39 0.15
AY650311_1(AY650311|pid:none) Macaca fascicularis slit 1 mRNA, p... 39 0.15
AJ271193_1(AJ271193|pid:none) Anopheles gambiae mRNA for laminin... 39 0.15
AL596139_3(AL596139|pid:none) BAC A of library A from Tetraodon ... 38 0.20
FN357711_11(FN357711|pid:none) Schistosoma mansoni genome sequen... 38 0.20
(P25391) RecName: Full=Laminin subunit alpha-1; Short=L... 38 0.20
AJ005083_1(AJ005083|pid:none) Tribolium castaneum notch gene, pa... 38 0.20
AF032672_1(AF032672|pid:none) Lucilia cuprina Notch homolog (Scl... 38 0.20
AB210366_1(AB210366|pid:none) Ciona intestinalis mRNA for delta-... 38 0.20
AK159416_1(AK159416|pid:none) Mus musculus osteoclast-like cell ... 38 0.20
AB010099_1(AB010099|pid:none) Homo sapiens mRNA for laminin alph... 38 0.20
DQ440590_1(DQ440590|pid:none) Danio rerio clone IMAGE:7001749 be... 38 0.20
FJ222591_1(FJ222591|pid:none) Periplaneta americana Notch protei... 38 0.20
(Q8CFM6) RecName: Full=Stabilin-2; AltName: Full=Fasciclin, EGF-... 38 0.20
DQ440589_1(DQ440589|pid:none) Danio rerio truncated integrin bet... 38 0.20
M25063_1(M25063|pid:none) Drosophila mRNA for laminin B2 chain. ... 38 0.25
EU441156_1(EU441156|pid:none) Patiria miniata delta protein mRNA... 38 0.25
AE014134_2561(AE014134|pid:none) Drosophila melanogaster chromos... 38 0.25
(Q9W6F9) RecName: Full=Wnt inhibitory factor 1; Short=W... 38 0.25
AY314773_1(AY314773|pid:none) Caenorhabditis elegans flamingo-li... 38 0.25
(A0JP86) RecName: Full=Laminin subunit gamma-1; Flags: Precursor... 38 0.25
AK149309_1(AK149309|pid:none) Mus musculus adult retina cDNA, RI... 38 0.25
BC079887_1(BC079887|pid:none) Mus musculus FAT tumor suppressor ... 38 0.25
(P49013) RecName: Full=Fibropellin-3; AltName: Full=Fibropellin ... 38 0.25
AB173680_1(AB173680|pid:none) Macaca fascicularis brain cDNA clo... 38 0.25
DQ167755_1(DQ167755|pid:none) Drosophila orena putative Laminin ... 38 0.25
(P15215) RecName: Full=Laminin subunit gamma-1; AltName: Full=La... 38 0.25
(Q2PZL6) RecName: Full=Protocadherin Fat 4; AltName: Full=FAT tu... 38 0.25
AF135118_1(AF135118|pid:none) Drosophila melanogaster laminin al... 38 0.25
AB011537_1(AB011537|pid:none) Homo sapiens mRNA for MEGF4, parti... 37 0.33
BX883044_5(BX883044|pid:none) Rattus norvegicus chromosome 20, m... 37 0.33
AB383997_1(AB383997|pid:none) Synthetic construct DNA, clone: pF... 37 0.33
AK122376_1(AK122376|pid:none) Mus musculus mRNA for mKIAA0813 pr... 37 0.33
FN357841_1(FN357841|pid:none) Schistosoma mansoni genome sequenc... 37 0.33
CP001327_152(CP001327|pid:none) Micromonas sp. RCC299 chromosome... 37 0.33
L33862_1(L33862|pid:none) Sea urchin fibropellin III mRNA, 3' end. 37 0.33
BC156301_1(BC156301|pid:none) Synthetic construct Mus musculus c... 37 0.33
(A2AVA0) RecName: Full=Sushi, von Willebrand factor type A, EGF ... 37 0.33
DQ167758_1(DQ167758|pid:none) Drosophila yakuba putative Laminin... 37 0.33
AB017167_1(AB017167|pid:none) Homo sapiens mRNA for Slit-1 prote... 37 0.33
AL442123_4(AL442123|pid:none) Human DNA sequence from clone RP11... 37 0.33
(O75093) RecName: Full=Slit homolog 1 protein; Short=Sl... 37 0.33
AB098194_1(AB098194|pid:none) Codonosiga gracilis CgPTK-f mRNA f... 37 0.33
(P97607) RecName: Full=Protein jagged-2; Short=Jagged2;... 37 0.33
BC057131_1(BC057131|pid:none) Mus musculus slit homolog 1 (Droso... 37 0.33
AF144627_1(AF144627|pid:none) Mus musculus SLIT1 (Slit1) mRNA, c... 37 0.33
(Q80TR4) RecName: Full=Slit homolog 1 protein; Short=Sl... 37 0.33
DQ917570_1(DQ917570|pid:none) Parhyale hawaiensis delta protein ... 37 0.33
FM209056_1(FM209056|pid:none) Homo sapiens mRNA for Eyes shut ho... 37 0.43
FN357369_73(FN357369|pid:none) Schistosoma mansoni genome sequen... 37 0.43
AY812463_1(AY812463|pid:none) Schistosoma japonicum SJCHGC09372 ... 37 0.43
Z70038_8(Z70038|pid:none) Caenorhabditis elegans Cosmid ZK1067, ... 37 0.43
AB073215_1(AB073215|pid:none) Rattus norvegicus SLIT1 mRNA for S... 37 0.43
BC091959_1(BC091959|pid:none) Danio rerio wnt inhibitory factor ... 37 0.43
(P10079) RecName: Full=Fibropellin-1; AltName: Full=Fibropellin-... 37 0.43
(O88279) RecName: Full=Slit homolog 1 protein; Short=Sl... 37 0.43
BC045172_1(BC045172|pid:none) Homo sapiens laminin, beta 4, mRNA... 37 0.43
(Q8VIK5) RecName: Full=Platelet endothelial aggregation receptor... 37 0.43
FN357418_8(FN357418|pid:none) Schistosoma mansoni genome sequenc... 37 0.43
AF461685_1(AF461685|pid:none) Mus musculus Jedi-736 protein mRNA... 37 0.43
BC031166_1(BC031166|pid:none) Mus musculus stabilin 1, mRNA (cDN... 37 0.43
AJ507290_1(AJ507290|pid:none) Cupiennius salei mRNA for Delta2 p... 37 0.43
T27684(T27684)hypothetical protein ZK1067.2 - Caenorhabditis ele... 37 0.43
AF133730_1(AF133730|pid:none) Rattus norvegicus Slit1 mRNA, comp... 37 0.43
AF444274_1(AF444274|pid:none) Mus musculus Jedi protein mRNA, co... 37 0.43
(Q9QXX0) RecName: Full=Protein jagged-1; Short=Jagged1;... 37 0.43
AL109612_1(AL109612|pid:none) Human DNA sequence from clone RP5-... 37 0.57
FN357387_32(FN357387|pid:none) Schistosoma mansoni genome sequen... 37 0.57
AK302554_1(AK302554|pid:none) Homo sapiens cDNA FLJ51576 complet... 37 0.57
CR388178_1(CR388178|pid:none) Zebrafish DNA sequence from clone ... 37 0.57
BC098806_1(BC098806|pid:none) Rattus norvegicus integrin, beta 7... 37 0.57
(P78504) RecName: Full=Protein jagged-1; Short=Jagged1;... 37 0.57
A56136(A56136)jagged protein precursor - rat 37 0.57
BC133011_1(BC133011|pid:none) Homo sapiens eyes shut homolog (Dr... 37 0.57
AL158158_5(AL158158|pid:none) Human DNA sequence from clone RP11... 37 0.57
AK312722_1(AK312722|pid:none) Homo sapiens cDNA, FLJ93126, highl... 37 0.57
AK027870_1(AK027870|pid:none) Homo sapiens cDNA FLJ14964 fis, cl... 37 0.57
CP001326_59(CP001326|pid:none) Micromonas sp. RCC299 chromosome ... 37 0.57
DQ314735_1(DQ314735|pid:none) Danio rerio crumbs-like protein 1 ... 37 0.57
FN357468_8(FN357468|pid:none) Schistosoma mansoni genome sequenc... 37 0.57
(Q61292) RecName: Full=Laminin subunit beta-2; AltName: Full=S-l... 37 0.57
AB208887_1(AB208887|pid:none) Homo sapiens mRNA for laminin, gam... 37 0.57
CR847569_2(CR847569|pid:none) Zebrafish DNA sequence from clone ... 37 0.57
AF132883_1(AF132883|pid:none) Caenorhabditis elegans UNC-52/Perl... 37 0.57
AF041835_1(AF041835|pid:none) Homo sapiens laminin gamma 3 chain... 37 0.57
AC117076_37(AC117076|pid:none) Dictyostelium discoideum chromoso... 37 0.57
J03641_1(J03641|pid:none) Chicken cytotactin mRNA, partial cds, ... 37 0.57
BC163555_1(BC163555|pid:none) Danio rerio crumbs homolog 1 (Dros... 37 0.57
U61276_1(U61276|pid:none) Human transmembrane protein Jagged 1 (... 37 0.57
EU685294_1(EU685294|pid:none) Branchiostoma lanceolatum notch re... 37 0.57
BC098393_1(BC098393|pid:none) Homo sapiens jagged 1 (Alagille sy... 37 0.57
AL109612_2(AL109612|pid:none) Human DNA sequence from clone RP5-... 37 0.57
AC012647_8(AC012647|pid:none) Trypanosoma brucei chromosome 2 cl... 36 0.74
AF499438_1(AF499438|pid:none) Caenorhabditis briggsae notch-like... 36 0.74
A49175(A49175;PH1570;S32113) Motch B protein - mouse (fragment) ... 36 0.74
BC044262_1(BC044262|pid:none) Xenopus laevis similar to delta-li... 36 0.74
(Q6DI48) RecName: Full=Delta-like protein A; Short=Delt... 36 0.74
AB095017_1(AB095017|pid:none) Cynops pyrrhogaster Delta-1 mRNA f... 36 0.74
BC172642_1(BC172642|pid:none) Synthetic construct Mus musculus c... 36 0.74
U70843_1(U70843|pid:none) Xenopus laevis Notch ligand X-Delta-2 ... 36 0.74
M17421_1(M17421|pid:none) Strongylocentrotus purpuratus putative... 36 0.74
AB194048_1(AB194048|pid:none) Canis lupus familiaris slit2mRNA f... 36 0.74
L08692_2(L08692|pid:none) Strongylocentrotus purpuratus fibropel... 36 0.74
AE014134_1453(AE014134|pid:none) Drosophila melanogaster chromos... 36 0.74
AL137311_1(AL137311|pid:none) Homo sapiens mRNA; cDNA DKFZp761G0... 36 0.74
CU458989_1(CU458989|pid:none) Danio rerio cDNA, clone cssl:d0399. 36 0.74
(O57409) RecName: Full=Delta-like protein B; Short=Delt... 36 0.74
BC139487_1(BC139487|pid:none) Danio rerio slit (Drosophila) homo... 36 0.74
AF154501_1(AF154501|pid:none) Thalassiosira weissflogii sexually... 36 0.74
CP000595_187(CP000595|pid:none) Ostreococcus lucimarinus CCE9901... 36 0.74
BC035009_1(BC035009|pid:none) Homo sapiens delta/notch-like EGF ... 36 0.74
AL133021_1(AL133021|pid:none) Homo sapiens mRNA; cDNA DKFZp434E0... 36 0.74
AF491484_1(AF491484|pid:none) Caenorhabditis elegans strain PB30... 36 0.74
AK289553_1(AK289553|pid:none) Homo sapiens cDNA FLJ76207 complet... 36 0.74
AB073214_1(AB073214|pid:none) Rattus norvegicus SLIT1 mRNA for S... 36 0.74
BC091809_1(BC091809|pid:none) Danio rerio hypothetical protein L... 36 0.97
U89335_1(U89335|pid:none) Homo sapiens chromosome 6 notch4 (NOTC... 36 0.97
BC145488_1(BC145488|pid:none) Mus musculus slit homolog 2 (Droso... 36 0.97
(O64758) RecName: Full=Vacuolar-sorting receptor 5; Sho... 36 0.97
AK155137_1(AK155137|pid:none) Mus musculus NOD-derived CD11c +ve... 36 0.97
BC145886_1(BC145886|pid:none) Mus musculus sushi, nidogen and EG... 36 0.97
AF074960_1(AF074960|pid:none) Mus musculus neurogenic extracellu... 36 0.97
BC059267_1(BC059267|pid:none) Mus musculus slit homolog 2 (Droso... 36 0.97
(Q9R1B9) RecName: Full=Slit homolog 2 protein; Short=Sl... 36 0.97
AB023961_1(AB023961|pid:none) Homo sapiens NOTCH4 gene, exon 1 t... 36 0.97
BC170476_1(BC170476|pid:none) Xenopus laevis slit homolog 2 (Dro... 36 0.97
BX004766_1(BX004766|pid:none) Zebrafish DNA sequence from clone ... 36 0.97
(A0A1F4) RecName: Full=Protein eyes shut; AltName: Full=Protein ... 36 0.97
AK220505_1(AK220505|pid:none) Mus musculus mRNA for mKIAA4141 pr... 36 0.97
AJ536342_1(AJ536342|pid:none) Glomeris marginata partial mRNA fo... 36 0.97
AF283408_1(AF283408|pid:none) Homo sapiens candidate tumor suppr... 36 0.97
(Q70E20) RecName: Full=Sushi, nidogen and EGF-like domain-contai... 36 0.97
AL359813_6(AL359813|pid:none) Human DNA sequence from clone RP5-... 36 0.97
AF229450_1(AF229450|pid:none) Danio rerio jagged2 (jag2) mRNA, c... 36 0.97
(Q6UY11) RecName: Full=Protein delta homolog 2; Short=D... 36 0.97
AY046070_1(AY046070|pid:none) Xenopus laevis Slit mRNA, complete... 36 0.97
AF387320_1(AF387320|pid:none) Gallus gallus slit-2 mRNA, partial... 36 0.97
AL359813_9(AL359813|pid:none) Human DNA sequence from clone RP5-... 36 0.97
AF370126_1(AF370126|pid:none) Mus musculus brain EGF repeat-cont... 35 1.3
(Q8TDW7) RecName: Full=Protocadherin Fat 3; Short=hFat3... 35 1.3
DQ976710_4(DQ976710|pid:none) Hylobates klossii NOTCH2 (NOTCH2) ... 35 1.3
(Q8JZM4) RecName: Full=Delta and Notch-like epidermal growth fac... 35 1.3
(Q25464) RecName: Full=Adhesive plaque matrix protein 2; AltName... 35 1.3
AJ748821_1(AJ748821|pid:none) Homo sapiens mRNA for crumbs homol... 35 1.3
AF003521_1(AF003521|pid:none) Homo sapiens Jagged 2 mRNA, comple... 35 1.3
AB077987_1(AB077987|pid:none) Halocynthia roretzi mRNA for HrDel... 35 1.3
CP001324_318(CP001324|pid:none) Micromonas sp. RCC299 chromosome... 35 1.3
(P82279) RecName: Full=Crumbs homolog 1; Flags: Precursor; &AL1... 35 1.3
AB076400_1(AB076400|pid:none) Homo sapiens mRNA for fat3, partia... 35 1.3
BC162451_1(BC162451|pid:none) Danio rerio crumbs homolog 2, mRNA... 35 1.3
AL136322_3(AL136322|pid:none) Human DNA sequence from clone RP11... 35 1.3
AY995116_1(AY995116|pid:none) Strigamia maritima notch mRNA, par... 35 1.3
AF154671_1(AF154671|pid:none) Homo sapiens CRB1 mRNA, complete c... 35 1.3
AF029778_1(AF029778|pid:none) Homo sapiens Jagged2 (JAG2) mRNA, ... 35 1.3
AY497019_5(AY497019|pid:none) Mus musculus strain C57BL/6J chrom... 35 1.3
AF337951_1(AF337951|pid:none) Entamoeba histolytica Gal/GalNAc l... 35 1.3
(Q61483) RecName: Full=Delta-like protein 1; AltName: Full=Droso... 35 1.3
AF029779_1(AF029779|pid:none) Homo sapiens hJAG2.del-E6 (JAG2) m... 35 1.3
AF020201_1(AF020201|pid:none) Homo sapiens Jagged 2 mRNA, comple... 35 1.3
AK152755_1(AK152755|pid:none) Mus musculus bone marrow macrophag... 35 1.3
U77493_1(U77493|pid:none) Human Notch2 mRNA, partial cds. 35 1.3
AK302818_1(AK302818|pid:none) Homo sapiens cDNA FLJ52407 complet... 35 1.3
EU285556_1(EU285556|pid:none) Amphimedon queenslandica hedgling ... 35 1.3
BX640729_1(BX640729|pid:none) Homo sapiens mRNA; cDNA DKFZp686M1... 35 1.3
Y14330_1(Y14330|pid:none) Homo sapiens partial mRNA for jagged2 ... 35 1.3
BC022636_1(BC022636|pid:none) Mus musculus delta/notch-like EGF-... 35 1.3
AF308652_1(AF308652|pid:none) Podocoryne carnea integrin beta ch... 35 1.7
(P55066) RecName: Full=Neurocan core protein; AltName: Full=Chon... 35 1.7
BC118057_1(BC118057|pid:none) Mus musculus delta-like 2 homolog ... 35 1.7
FN357292_136(FN357292|pid:none) Schistosoma mansoni genome seque... 35 1.7
AK302826_1(AK302826|pid:none) Homo sapiens cDNA FLJ54394 complet... 35 1.7
EU589332_1(EU589332|pid:none) Sus scrofa delta-like 2 protein mR... 35 1.7
U13646_1(U13646|pid:none) Caenorhabditis elegans cosmid ZK783, c... 35 1.7
(P97677) RecName: Full=Delta-like protein 1; AltName: Full=Droso... 35 1.7
FN357339_42(FN357339|pid:none) Schistosoma mansoni genome sequen... 35 1.7
(O73791) RecName: Full=Tyrosine-protein kinase receptor Tie-2; ... 35 1.7
(P35555) RecName: Full=Fibrillin-1; Flags: Precursor; &L13923_1... 35 1.7
X63556_1(X63556|pid:none) H.sapiens mRNA for fibrillin. 35 1.7
AB377286_1(AB377286|pid:none) Lethenteron japonicum Factor X-2 m... 35 1.7
AJ507288_1(AJ507288|pid:none) Cupiennius salei partial mRNA for ... 35 1.7
AL109922_1(AL109922|pid:none) Human DNA sequence from clone RP3-... 35 1.7
U09191_1(U09191|pid:none) Carassius auratus Notch-3 homolog mRNA... 35 1.7
BC169084_1(BC169084|pid:none) Rattus norvegicus delta-like 2 hom... 35 1.7
(Q5M9B3) RecName: Full=Integrin beta-like protein 1; Flags: Prec... 35 1.7
AY118666_1(AY118666|pid:none) Drosophila melanogaster SD26855 fu... 35 1.7
CR388098_1(CR388098|pid:none) Zebrafish DNA sequence from clone ... 35 1.7
(Q9VW71) RecName: Full=Putative fat-like cadherin-related tumor ... 35 1.7
A55035(A55035;S45034) cysteine-rich protein CRP1 - earthworm (En... 35 1.7
AY972866_1(AY972866|pid:none) Monodelphis domestica delta-like 1... 35 1.7
AB177802_1(AB177802|pid:none) Homo sapiens FBN1 gene for fibrill... 35 1.7
X17531_1(X17531|pid:none) S.purpuratus RNA for epidermal growth ... 35 1.7
BC046744_1(BC046744|pid:none) Xenopus laevis Integrin beta-like ... 35 1.7
AL450324_2(AL450324|pid:none) Human DNA sequence from clone RP11... 35 1.7
AY611523_1(AY611523|pid:none) Schistocerca americana delta-like ... 35 1.7
AF337950_1(AF337950|pid:none) Entamoeba histolytica Gal/GalNAc l... 35 1.7
U66796_1(U66796|pid:none) Human laminin alpha 2 chain (LAMA2) ge... 35 2.2

>AC117075_64(AC117075|pid:none) Dictyostelium discoideum chromosome
2 map 5201047-5455781 strain AX4, complete sequence.
Length = 634

Score = 67.4 bits (163), Expect = 3e-10
Identities = 41/120 (34%), Positives = 61/120 (50%), Gaps = 9/120 (7%)
Frame = +3

Query: 102 CPLYCSTPNGTCDINSGICTCDNEHIGNGCEIKFIECKHKCSTK--------HGICDNDS 257
CPL CS P+GTC+ +G C CD++ G GCE+ I ST HG +
Sbjct: 177 CPLNCSQPHGTCNRVTGECECDSQTNGKGCELSRIYINSVDSTTINGGTTYLHGYFGIYN 236

Query: 258 GNCKCDTQTKGLTCEESRLL-IESLDSTNSKGDIGEGKGIHNITIIDDDLSFTAINKFQY 434
+Q + E + I+ ++ + + DIG G+GI ++TIID D+S+T FQY
Sbjct: 237 TTTTTTSQRLSIKIGELQCKNIQVINDSTIQCDIGPGEGIKDVTIIDMDISYTGKQIFQY 296

Score = 37.4 bits (85), Expect = 0.33
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Frame = +3

Query: 135 CDINSG-----ICTCDNEHIGNGCEI-KFIECKHKC-----STKHGICDNDSGNCKCDTQ 281
CDI G + D + G +I ++ + KH C S+ +GIC+ DSG C C
Sbjct: 268 CDIGPGEGIKDVTIIDMDISYTGKQIFQYTKIKHSCPNDCTSSSNGICNTDSGICTCING 327

Query: 282 TKGLTCEESRLLIESLDSTNSKGDIGEGKGIHNIT 386
G C + D+ +SK +I E G +I+
Sbjct: 328 FTGFNCNSQD---SNPDAPSSKPNINETTGEASIS 359

Score = 35.4 bits (80), Expect = 1.3
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3

Query: 102 CPLYC-STPNGTCDINSGICTCDNEHIGNGC 191
CP C S+ NG C+ +SGICTC N G C
Sbjct: 303 CPNDCTSSSNGICNTDSGICTCINGFTGFNC 333

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 692,899,492
Number of extensions: 12412668
Number of successful extensions: 35159
Number of sequences better than 10.0: 724
Number of HSP's gapped: 33620
Number of HSP's successfully gapped: 1754
Length of query: 202
Length of database: 1,051,180,864
Length adjustment: 122
Effective length of query: 80
Effective length of database: 656,320,666
Effective search space: 52505653280
Effective search space used: 52505653280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)

PSORT

psg: 0.75 gvh: 0.38 alm: 0.19 top: 0.80 tms: 0.07 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.03 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 1.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: cytoplasmic
20.0 %: nuclear
16.0 %: vesicles of secretory system
12.0 %: mitochondrial
8.0 %: Golgi
8.0 %: endoplasmic reticulum
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: plasma membrane

>> prediction for Contig-U13778-1 is cyt

VS (DIR, S) 0
VH (FL, L) 2
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0