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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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Contig-U02301-1
Contig ID Contig-U02301-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U02301-1 (Contig-U02301-1Q) /CSM_Contig/Contig-U02301-1Q.Seq.d
GTACAGTTATAATATTACAACACAAATTAAAAATAATTATTTTAGTGGGA
TATTAAAAAGAGTTTTTATATTTATTAAATAATAATATATATAAAAAAAA
AAAAAAAAACAAATCAATTTTTCAATTTATAGCGAATTTAAAT-------
---GAACATGAAGGTCAATACACTCATAAAATATATCATCTTGGTTCACG
TCTTCCAGGTTGGATTAGAGCTCTCATTCCATCATCTGCTTTAAAATTAG
AAGAAAAAGCTTGGAATGCTTATCCATATTGTAAAACCGTTTTAAAAAGT
CCATTTTTAGGTGAAAAATTCACTTTTATCATTGAATCTCGTCATGCTCA
AGATAATTGTAAAACTGAAAATATTCATAACCTTTCAGAAAAAGAATTAA
AAGAAAGAACAGTTGAAGTTATTGATATTACAAAACCAATTAAAGATCCA
AAAAATTATAAAGAGACTGAAGATCCAACAAAAATCAGATCAGAGAAAGC
AAACCGTGGTCCATTAGAAGAGGAGAAATGGAGAGAAAGTACAGAAATGC
CAATTATGACATGTTACAAATTAGTCACTGTCGAATTTAAATATTTTGGA
TTCCAAACTAAAGTTGAAAACTTTATGATGGGTATTGAATTTGATCTCTT
CACCAAATTCCATAGACAAGTCTATTGTTGGTTAGATGAATGGTTCGGAA
TGTCAATGGATGACGTTAGAGCTTTCGAATTAAAAACTAAAGAAGATCT
Gap gap included
Contig length 739
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 3613841
End point 3614581
Strand (PLUS/MINUS) PLUS
Number of clones 3
Number of EST 4
Link to clone list U02301
List of clone(s) 

est1=VSJ588F,1,102
est2=VSB628E,9,144
est3=VSI791Z,145,601
est4=VSJ588Z,290,741
Translated Amino Acid sequence 
tviilqhklkiiilvgy*KEFLYLLNNNIYKKKKKNKSIFQFIANLN---

---EHEGQYTHKIYHLGSRLPGWIRALIPSSALKLEEKAWNAYPYCKTVLKSPFLGEKFT
FIIESRHAQDNCKTENIHNLSEKELKERTVEVIDITKPIKDPKNYKETEDPTKIRSEKAN
RGPLEEEKWRESTEMPIMTCYKLVTVEFKYFGFQTKVENFMMGIEFDLFTKFHRQVYCWL
DEWFGMSMDDVRAFELKTKED
Translated Amino Acid sequence (All Frames) 
Frame A:
vql*yyntn*k*lf*wdikksfyiy*iiiyikkkkktnqffnl*ri*---

---EHEGQYTHKIYHLGSRLPGWIRALIPSSALKLEEKAWNAYPYCKTVLKSPFLGEKFT
FIIESRHAQDNCKTENIHNLSEKELKERTVEVIDITKPIKDPKNYKETEDPTKIRSEKAN
RGPLEEEKWRESTEMPIMTCYKLVTVEFKYFGFQTKVENFMMGIEFDLFTKFHRQVYCWL
DEWFGMSMDDVRAFELKTKED

Frame B:
ysynittqiknnyfsgilkrvfifik**yi*kkkkkqinfsiysefk---

---nmkvntlikyiilvhvfqvglelsfhhll*n*kkklgmlihivkpf*kvhf*vknsl
lslnlvmlkiivklkifitfqkkn*kkeqlkllilqnqlkiqkiikrlkiqqksdqrkqt
vvh*krrngekvqkcql*hvtn*slsnlnildsklklktl*wvlnlisspnsidksivg*
mngsecqwmtlelsn*klkki

Frame C:
tviilqhklkiiilvgy*KEFLYLLNNNIYKKKKKNKSIFQFIANLN---

---t*rsihs*nisswftssrld*sshsiicfkirrksleclsil*nrfkksifr*kihf
yh*isscsr*l*n*kys*pfrkrikrkns*sy*yyktn*rskkl*rd*rsnknqireskp
wsirrgemerkyrnanydmlqishcri*ifwipn*s*klydgy*i*slhqip*tslllvr
*mvrnvng*r*sfrikn*rrs
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U02301-1 (Contig-U02301-1Q)
/CSM_Contig/Contig-U02301-1Q.Seq.d
         (749 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U02301-1 (Contig-U02301-1Q) /CSM_Contig/Conti...  1209  0.0
Contig-U14162-1 (Contig-U14162-1Q) /CSM_Contig/Conti...    86  6e-17
Contig-U05497-1 (Contig-U05497-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U12095-1 (Contig-U12095-1Q) /CSM_Contig/Conti...    36  0.053
Contig-U09625-1 (Contig-U09625-1Q) /CSM_Contig/Conti...    36  0.053
Contig-U09392-1 (Contig-U09392-1Q) /CSM_Contig/Conti...    36  0.053
Contig-U01996-1 (Contig-U01996-1Q) /CSM_Contig/Conti...    36  0.053
Contig-U13343-1 (Contig-U13343-1Q) /CSM_Contig/Conti...    34  0.21
Contig-U12754-1 (Contig-U12754-1Q) /CSM_Contig/Conti...    34  0.21
Contig-U11900-1 (Contig-U11900-1Q) /CSM_Contig/Conti...    34  0.21

>Contig-U02301-1 (Contig-U02301-1Q) /CSM_Contig/Contig-U02301-1Q.Seq.d
          Length = 749

 Score = 1209 bits (610), Expect = 0.0
 Identities = 640/640 (100%)
 Strand = Plus / Plus

                                                                       
Query: 110 caaatcaatttttcaatttatagcgaatttaaatnnnnnnnnnngaacatgaaggtcaat 169
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 caaatcaatttttcaatttatagcgaatttaaatnnnnnnnnnngaacatgaaggtcaat 169

                                                                       
Query: 170 acactcataaaatatatcatcttggttcacgtcttccaggttggattagagctctcattc 229
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 acactcataaaatatatcatcttggttcacgtcttccaggttggattagagctctcattc 229

                                                                       
Query: 230 catcatctgctttaaaattagaagaaaaagcttggaatgcttatccatattgtaaaaccg 289
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 catcatctgctttaaaattagaagaaaaagcttggaatgcttatccatattgtaaaaccg 289

                                                                       
Query: 290 ttttaaaaagtccatttttaggtgaaaaattcacttttatcattgaatctcgtcatgctc 349
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 ttttaaaaagtccatttttaggtgaaaaattcacttttatcattgaatctcgtcatgctc 349

                                                                       
Query: 350 aagataattgtaaaactgaaaatattcataacctttcagaaaaagaattaaaagaaagaa 409
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 aagataattgtaaaactgaaaatattcataacctttcagaaaaagaattaaaagaaagaa 409

                                                                       
Query: 410 cagttgaagttattgatattacaaaaccaattaaagatccaaaaaattataaagagactg 469
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 cagttgaagttattgatattacaaaaccaattaaagatccaaaaaattataaagagactg 469

                                                                       
Query: 470 aagatccaacaaaaatcagatcagagaaagcaaaccgtggtccattagaagaggagaaat 529
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 aagatccaacaaaaatcagatcagagaaagcaaaccgtggtccattagaagaggagaaat 529

                                                                       
Query: 530 ggagagaaagtacagaaatgccaattatgacatgttacaaattagtcactgtcgaattta 589
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 ggagagaaagtacagaaatgccaattatgacatgttacaaattagtcactgtcgaattta 589

                                                                       
Query: 590 aatattttggattccaaactaaagttgaaaactttatgatgggtattgaatttgatctct 649
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 aatattttggattccaaactaaagttgaaaactttatgatgggtattgaatttgatctct 649

                                                                       
Query: 650 tcaccaaattccatagacaagtctattgttggttagatgaatggttcggaatgtcaatgg 709
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 tcaccaaattccatagacaagtctattgttggttagatgaatggttcggaatgtcaatgg 709

                                                   
Query: 710 atgacgttagagctttcgaattaaaaactaaagaagatct 749
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 atgacgttagagctttcgaattaaaaactaaagaagatct 749


 Score = 63.9 bits (32), Expect = 2e-10
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 1  gtacagttataatattacaacacaaattaaaa 32
          ||||||||||||||||||||||||||||||||
Sbjct: 1  gtacagttataatattacaacacaaattaaaa 32


>Contig-U14162-1 (Contig-U14162-1Q) /CSM_Contig/Contig-U14162-1Q.Seq.d
          Length = 1182

 Score = 85.7 bits (43), Expect = 6e-17
 Identities = 49/51 (96%)
 Strand = Plus / Plus

                                                              
Query: 237 tgctttaaaattagaagaaaaagcttggaatgcttatccatattgtaaaac 287
           |||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tgctttaaaaattgaagaaaaagcttggaatgcttatccatattgtaaaac 436


 Score = 52.0 bits (26), Expect = 9e-07
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 583 gaatttaaatattttggattccaaactaaagttgaaaa 620
           |||||||||||||  || ||||||||||||||||||||
Sbjct: 723 gaatttaaatattggggtttccaaactaaagttgaaaa 760


>Contig-U05497-1 (Contig-U05497-1Q) /CSM_Contig/Contig-U05497-1Q.Seq.d
          Length = 798

 Score = 38.2 bits (19), Expect = 0.013
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 387 agaaaaagaattaaaagaa 405
           |||||||||||||||||||
Sbjct: 209 agaaaaagaattaaaagaa 227


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9978
Number of Sequences: 6905
Number of extensions: 9978
Number of successful extensions: 1148
Number of sequences better than 10.0: 122
length of query: 749
length of database: 5,674,871
effective HSP length: 16
effective length of query: 733
effective length of database: 5,564,391
effective search space: 4078698603
effective search space used: 4078698603
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 5.17
Homology vs DNA 
Query= Contig-U02301-1 (Contig-U02301-1Q) /CSM_Contig/Contig-U02301-1Q.Seq.d
         (749 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AF205061) Dictyostelium discoideum phosphatidylinositol tra...  1179   0.0    1
(AU269237) Dictyostelium discoideum vegetative cDNA clone:VS...   898   0.0    1
(AU270164) Dictyostelium discoideum vegetative cDNA clone:VS...   894   0.0    1
(AF205062) Dictyostelium discoideum phosphatidylinositol tra...    86   2e-21  3
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    86   7e-18  2
(BJ387201) Dictyostelium discoideum cDNA clone:dds12e23, 5' ...    86   2e-12  1
(BJ361908) Dictyostelium discoideum cDNA clone:ddc19f08, 5' ...    86   2e-12  1
(BJ361739) Dictyostelium discoideum cDNA clone:ddc18e16, 5' ...    86   2e-12  1
(BJ358928) Dictyostelium discoideum cDNA clone:ddc11p21, 5' ...    86   2e-12  1
(BJ339471) Dictyostelium discoideum cDNA clone:dda65p12, 5' ...    86   2e-12  1
(AU262146) Dictyostelium discoideum vegetative cDNA clone:VS...    68   2e-09  2
(DN312740) PL06013B2A10 cDNA from juvenile hermaphodites Sch...    62   2e-06  2
(DN310658) PL06008A1B12 cDNA from juvenile hermaphodites Sch...    62   2e-06  2
(DN309045) PL06002X1G03 cDNA from juvenile hermaphodites Sch...    62   2e-06  2
(DN299313) PL04015B1F02 cDNA from sexually mature hermaphodi...    62   2e-06  2
(DN310110) PL06006B1C04 cDNA from juvenile hermaphodites Sch...    62   2e-06  2
(DN313604) PL06016A1D07 cDNA from juvenile hermaphodites Sch...    62   2e-06  2
(DN298121) PL04011B2A11 cDNA from sexually mature hermaphodi...    62   2e-06  2
(DN290136) PL030003A10B02 cDNA from sexually mature hermapho...    60   3e-06  2
(CF200419) GIT1421 Root-induced cDNA library from Glomus int...    50   3e-05  2
(DN306164) PL05010B1D02 cDNA from sexually mature hermaphodi...    62   3e-05  1
(DN297083) PL04008A2A02 cDNA from sexually mature hermaphodi...    62   3e-05  1
(EC758846) PPE00005345 Agencourt Biosciences Agen-0020 Non-n...    58   1e-04  2
(DY886799) CeleSEQ2588 Cunninghamella elegans pBluescript (E...    60   1e-04  1
(AU072697) Dictyostelium discoideum slug cDNA, clone SSA554.       60   1e-04  1
(BP189335) Dugesia japonica cDNA, clone: 06348_HH, expressed...    60   1e-04  1
(CV511934) kc49g09.y1 Xiphinema index CSEQDA01 Xiphinema ind...    38   2e-04  3
(EC757146) PPE00002541 Agencourt Biosciences Agen-0020 Non-n...    58   5e-04  1
(EC755254) PPE00003562 Agencourt Biosciences Agen-0020 Non-n...    58   5e-04  1
(EC754761) PPE00008650 Agencourt Biosciences Agen-0020 Non-n...    58   5e-04  1
(FL635972) TG_302_A7 Termite gut library Reticulitermes flav...    56   0.002  1
(C91541) Dictyostelium discoideum slug cDNA, clone SSK416.         52   0.005  2
(C90162) Dictyostelium discoideum slug cDNA, clone SSI163.         52   0.005  2
(C90552) Dictyostelium discoideum slug cDNA, clone SSI714.         52   0.005  2
(C90551) Dictyostelium discoideum slug cDNA, clone SSI713.         52   0.005  2
(AK173549) Ciona intestinalis cDNA, clone:ciad007h13, full i...    54   0.008  1
(DR444900) AR1014A07 A. gomesiana hemocytes normalized libra...    54   0.008  1
(DR444275) AR1007A03 A. gomesiana hemocytes normalized libra...    54   0.008  1
(FK203568) XABT213138.b1 Gateway compatible cien cDNA librar...    54   0.008  1
(FK124918) XABT164775.b1 Gateway compatible cien cDNA librar...    54   0.008  1
(AV839898) Ciona intestinalis cDNA, clone:rciad07h13, 3' end...    54   0.008  1
(DC443205) Gryllus bimaculatus mRNA, clone:GB00364-51_C02, 5...    44   0.008  2
(DW165302) CLVY3860.b1_G05.ab1 CLV(XYZ) lettuce virosa Lactu...    52   0.031  1
(DN311136) PL06009A2D11 cDNA from juvenile hermaphodites Sch...    52   0.031  1
(DN309075) PL06003X1A10 cDNA from juvenile hermaphodites Sch...    52   0.031  1
(CX771178) ACAD-aab35d07.g1 Hydra_EST_UCI-8 Hydra magnipapil...    52   0.031  1
(CO745844) tah85d11.y1 Hydra EST UCI 5 Hydra magnipapillata ...    48   0.059  2
(DN136238) ACAB-aaa75o20.g1 Hydra UCI6- barcoded EST's Hydra...    48   0.064  2
(DN245776) ACAE-aaa46a21.g1 Hydra EST UCI 5 Hydra magnipapil...    48   0.072  2
(CV464184) taj36h12.y1 Hydra EST UCI 5 ALP Hydra magnipapill...    48   0.077  2
(AP009732) Lotus japonicus genomic DNA, chromosome 1, clone:...    50   0.12   1
(BI510449) BB170021B20B01.5 Bee Brain Normalized/Subtracted ...    46   0.22   2
(BI505257) BB170020A10D04.5 Bee Brain Normalized/Subtracted ...    46   0.26   2
(BI504660) BB170007A20E01.5 Bee Brain Normalized/Subtracted ...    46   0.27   2
(BI505073) BB170013B20C06.5 Bee Brain Normalized/Subtracted ...    46   0.28   2
(EH013450) USDA-FP_186249 Lysiphlebus testaceipes adult whol...    36   0.28   2
(EH016676) USDA-FP_189153 Lysiphlebus testaceipes adult whol...    36   0.29   2
(ER330767) 1092344258711 Global-Ocean-Sampling_GS-34-01-01-1...    44   0.30   2
(ES584449) DT1043 Trichoplax adhaerens cDNA library Trichopl...    40   0.30   2
(DY888822) CeleSEQ6164 Cunninghamella elegans pBluescript (E...    40   0.35   2
(BX276189) Human DNA sequence from clone RP4-678D15 on chrom...    48   0.49   1
(AC004505) Homo sapiens chromosome 20, P1 clone 86C1 (LBNL H...    48   0.49   1
(FP102927) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.49   1
(CU928900) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.49   1
(CO746021) tah87d08.y1 Hydra EST UCI 5 Hydra magnipapillata ...    48   0.49   1
(CF657189) tac72c02.y1 Hydra EST -IV Hydra magnipapillata cD...    48   0.49   1
(CF654051) tac72c02.x1 Hydra EST -IV Hydra magnipapillata cD...    48   0.49   1
(BP517323) Hydra magnipapillata cDNA, clone:hmp_14014.             48   0.49   1
(AC166104) Mus musculus BAC clone RP23-320G7 from chromosome...    40   0.61   5
(AM761623) Oopsacas minuta EST, 5' end sequence, clone IL0AF...    36   1.1    2
(EJ147088) 1092343723747 Global-Ocean-Sampling_GS-27-01-01-1...    36   1.2    2
(EJ206913) 1092344361458 Global-Ocean-Sampling_GS-27-01-01-1...    40   1.3    2
(EK444902) 1095467024926 Global-Ocean-Sampling_GS-32-01-01-1...    40   1.3    2
(EB649166) GmUSCM11pBlueScriptR31e10f1 Gillichthys muscle li...    36   1.4    2
(DV017792) CA3D10_T7 Diploptera punctata corpora allata cDNA...    36   1.5    2
(AC194582) Canis familiaris chromosome 31, clone XX-8B8, com...    46   1.9    1
(AC188643) Canis familiaris chromosome 31, clone XX-371K20, ...    46   1.9    1
(AC159799) Bos taurus clone CH240-70L12, WORKING DRAFT SEQUE...    46   1.9    1
(AC156475) Bos taurus clone CH240-54M6, WORKING DRAFT SEQUEN...    46   1.9    1
(AC119068) Canis lupus familiaris clone RP81-359E18, WORKING...    46   1.9    1
(AC223327) Bos taurus clone CH240-422L6, WORKING DRAFT SEQUE...    46   1.9    1
(AC194585) Canis lupus familiaris chromosome 31 clone XX-458...    46   1.9    1
(AC173299) Bos taurus clone CH240-443A5, WORKING DRAFT SEQUE...    46   1.9    1
(DU646121) OG_ABa0061M03.f OG_ABa Oryza granulata genomic cl...    46   1.9    1
(BZ889258) CH240_198O6.TV CHORI-240 Bos taurus genomic clone...    46   1.9    1
(DV774787) McClintock_27_A01.ab1 Homarus EST library project...    46   1.9    1
(AU270163) Dictyostelium discoideum vegetative cDNA clone:VS...    46   1.9    1
(DB753097) Apis mellifera head cDNA, RIKEN full-length enric...    46   1.9    1
(DB752229) Apis mellifera head cDNA, RIKEN full-length enric...    46   1.9    1
(DB751782) Apis mellifera head cDNA, RIKEN full-length enric...    46   1.9    1
(DB750217) Apis mellifera head cDNA, RIKEN full-length enric...    46   1.9    1
(DB750030) Apis mellifera head cDNA, RIKEN full-length enric...    46   1.9    1
(DB746686) Apis mellifera head cDNA, RIKEN full-length enric...    46   1.9    1
(DB745549) Apis mellifera head cDNA, RIKEN full-length enric...    46   1.9    1
(DB743534) Apis mellifera head cDNA, RIKEN full-length enric...    46   1.9    1
(DB741977) Apis mellifera head cDNA, RIKEN full-length enric...    46   1.9    1
(DB741582) Apis mellifera head cDNA, RIKEN full-length enric...    46   1.9    1
(DB741302) Apis mellifera head cDNA, RIKEN full-length enric...    46   1.9    1
(DB738507) Apis mellifera head cDNA, RIKEN full-length enric...    46   1.9    1
(DB738440) Apis mellifera head cDNA, RIKEN full-length enric...    46   1.9    1
(DB737984) Apis mellifera head cDNA, RIKEN full-length enric...    46   1.9    1
(DB737849) Apis mellifera head cDNA, RIKEN full-length enric...    46   1.9    1
(DB737558) Apis mellifera head cDNA, RIKEN full-length enric...    46   1.9    1
(DB732909) Apis mellifera head cDNA, RIKEN full-length enric...    46   1.9    1
(DB731198) Apis mellifera head cDNA, RIKEN full-length enric...    46   1.9    1
(CN853548) Ha_mx0_14d07_SP6 Lobster Multiple Tissues, Normal...    46   1.9    1
(BI513424) BB160012B10H10.5 Bee Brain Normalized Library, BB...    46   1.9    1
(CD284182) G39174.60 NCI_CGAP_ZKid1 Danio rerio cDNA clone I...    40   2.2    2
(AC156318) Bos taurus clone CH240-51F24, WORKING DRAFT SEQUE...    34   2.4    5
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    36   2.6    13
(EK136589) 1095433019135 Global-Ocean-Sampling_GS-31-01-01-1...    36   3.5    2
(AC164192) Bos taurus clone CH240-150N8, *** SEQUENCING IN P...    34   3.6    2
(AC156731) Bos taurus clone CH240-39O24, WORKING DRAFT SEQUE...    34   3.7    2
(CT573420) M.truncatula DNA sequence from clone MTH2-17L3 on...    38   3.8    5
(CS727017) Sequence 129 from Patent WO2007101273.                  44   4.1    2
(CS726519) Sequence 129 from Patent WO2007103738.                  44   4.1    2
(EA692483) Sequence 71362 from patent US 7365185.                  40   5.0    2
(CU181911) Zebrafish DNA sequence from clone CH73-220M18 in ...    40   5.0    3
(AL766849) Streptococcus agalactiae NEM316 complete genome, ...    32   5.5    7
(DC442671) Gryllus bimaculatus mRNA, clone:GB00364-45_F08, 5...    36   6.3    2
(AC189420) Brassica rapa subsp. pekinensis clone KBrB063K02,...    40   7.3    3
(BV626830) S215P6215RF5.T0 Clara Pan troglodytes troglodytes...    44   7.6    1
(BV327469) S241P6112FF2.T0 IndiaGrayWolf Canis lupus STS gen...    44   7.6    1
(AC122484) Mus musculus BAC clone RP24-366J10 from chromosom...    44   7.6    1
(GC643877) Sequence 47327 from patent US 7432049.                  44   7.6    1
(CS727016) Sequence 128 from Patent WO2007101273.                  44   7.6    1
(CS726518) Sequence 128 from Patent WO2007103738.                  44   7.6    1
(CQ702401) Sequence 47327 from Patent WO02070737.                  44   7.6    1
(GC802092) Sequence 117337 from patent US 6812339.                 44   7.6    1
(GC802091) Sequence 117336 from patent US 6812339.                 44   7.6    1
(GC802023) Sequence 117268 from patent US 6812339.                 44   7.6    1
(GC802022) Sequence 117267 from patent US 6812339.                 44   7.6    1
(GC744723) Sequence 59968 from patent US 6812339.                  44   7.6    1
(GC744722) Sequence 59967 from patent US 6812339.                  44   7.6    1
(GC699737) Sequence 14982 from patent US 6812339.                  44   7.6    1
(GC699736) Sequence 14981 from patent US 6812339.                  44   7.6    1
(GC698251) Sequence 13496 from patent US 6812339.                  44   7.6    1
(AC217187) Homo sapiens BAC clone RP11-1319F3 from chromosom...    44   7.6    1
(AC133644) Homo sapiens BAC clone RP11-1399P15 from 2, compl...    44   7.6    1
(AC068506) Homo sapiens chromosome 18, clone RP11-96A15, com...    44   7.6    1
(AC068491) Homo sapiens BAC clone RP11-803D5 from 2, complet...    44   7.6    1
(AC022601) Homo sapiens chromosome 18, clone RP11-138H11, co...    44   7.6    1
(AC016945) Homo sapiens 3 BAC RP11-31L6 (Roswell Park Cancer...    44   7.6    1
(AC161069) Bos taurus clone CH240-83I10, WORKING DRAFT SEQUE...    44   7.6    1
(AC157122) Bos taurus clone CH240-45M11, WORKING DRAFT SEQUE...    44   7.6    1
(AC148138) Papio anubis clone RP41-147O1, WORKING DRAFT SEQU...    44   7.6    1
(AC144757) Bos taurus clone RP42-178N19, WORKING DRAFT SEQUE...    44   7.6    1
(AC144161) Macaca mulatta clone CH250-272H2, *** SEQUENCING ...    44   7.6    1
(AC134881) Homo sapiens chromosome UNK clone RP11-732A22, WO...    44   7.6    1
(AC128640) Homo sapiens clone RP11-333D8, *** SEQUENCING IN ...    44   7.6    1
(AC114331) Canis lupus familiaris clone RP81-310A23, WORKING...    44   7.6    1
(AC113566) Canis lupus familiaris clone RP81-214M16, WORKING...    44   7.6    1
(CU861995) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   7.6    1
(AP010074) Lotus japonicus genomic DNA, chromosome 1, clone:...    44   7.6    1
(AP002411) Homo sapiens genomic DNA, chromosome 18q12 clone:...    44   7.6    1
(AC231561) Pteropus vampyrus clone CH279-377A14, WORKING DRA...    44   7.6    1
(AC223614) Bos taurus clone CH240-464J23, WORKING DRAFT SEQU...    44   7.6    1
(AC217605) Pteropus vampyrus clone CH279-404H8, WORKING DRAF...    44   7.6    1
(AC199258) Chlorocebus aethiops clone CH252-82H22, WORKING D...    44   7.6    1
(AC171252) Bos taurus clone CH240-279E23, WORKING DRAFT SEQU...    44   7.6    1
(BH166147) ENTRI75TF Entamoeba histolytica Sheared DNA Entam...    44   7.6    1
(BH165338) ENTSN09TR Entamoeba histolytica Sheared DNA Entam...    44   7.6    1
(BH163851) ENTTA09TR Entamoeba histolytica Sheared DNA Entam...    44   7.6    1
(BH134424) ENTOZ60TR Entamoeba histolytica Sheared DNA Entam...    44   7.6    1
(AZ687612) ENTLL08TF Entamoeba histolytica Sheared DNA Entam...    44   7.6    1
(AZ685410) ENTMA93TF Entamoeba histolytica Sheared DNA Entam...    44   7.6    1
(AZ680534) ENTJS30TR Entamoeba histolytica Sheared DNA Entam...    44   7.6    1
(AZ676444) ENTJB33TF Entamoeba histolytica Sheared DNA Entam...    44   7.6    1
(AZ671763) ENTLC40TF Entamoeba histolytica Sheared DNA Entam...    44   7.6    1
(AZ537974) ENTEW47TF Entamoeba histolytica Sheared DNA Entam...    44   7.6    1
(FI224294) CccaBa050-J3TV CccABa Cajanus cajan genomic clone...    44   7.6    1
(FI201490) CccaBa022-I9TV CccABa Cajanus cajan genomic clone...    44   7.6    1
(ET981617) CHO_OF721xj17f1.ab1 CHO_OF Nicotiana tabacum geno...    44   7.6    1
(ET197874) MUGQ_CH252P396L18Sp6_CP753_069 CHORI-252 Vervet M...    44   7.6    1
(EK585809) 1095522074299 Global-Ocean-Sampling_GS-32-01-01-1...    44   7.6    1
(EK465516) 1095469420753 Global-Ocean-Sampling_GS-32-01-01-1...    44   7.6    1
(AM666050) Entamoeba terrapinae GSS, clone terra027g07.q1k.        44   7.6    1
(EJ094991) 1095460277838 Global-Ocean-Sampling_GS-26-01-01-1...    44   7.6    1
(ED068582) AUAC-aam74b09.g1 Ascaris suum whole genome shotgu...    44   7.6    1
(DU371508) 1098268241702 CHORI-243 Ovis aries genomic clone ...    44   7.6    1
(CR901472) Sus scrofa BES.                                         44   7.6    1
(CE004887) tigr-gss-dog-17000320837941 Dog Library Canis lup...    44   7.6    1
(CC926692) t090m09ba.f1 TAMBT Bos taurus genomic clone t090m...    44   7.6    1
(EE145664) SiJWB12CAM2 Lausanne fire ant library Solenopsis ...    44   7.6    1
(EC825882) SME00006047 esmbsro2 Sawyeria marylandensis cDNA,...    44   7.6    1
(DW346264) PP_LEc0007J09f Peach shoot Prunus persica cDNA cl...    44   7.6    1
(CO553837) SS_CP_01_E07 SS_CP Senecio squalidus subsp. squal...    44   7.6    1
(CO553301) SA_MF_01_F06 SA_MF Senecio aethnensis cDNA 5', mR...    44   7.6    1
(AM048193) Schistosoma mansoni lung schistosomulum EST, clon...    44   7.6    1
(AM047983) Schistosoma mansoni lung schistosomulum EST, clon...    44   7.6    1
(AM047446) Schistosoma mansoni lung schistosomulum EST, clon...    44   7.6    1
(AM046477) Schistosoma mansoni lung schistosomulum EST, clon...    44   7.6    1
(AM046455) Schistosoma mansoni lung schistosomulum EST, clon...    44   7.6    1
(AM045998) Schistosoma mansoni lung schistosomulum EST, clon...    44   7.6    1
(AM045980) Schistosoma mansoni lung schistosomulum EST, clon...    44   7.6    1
(AM045306) Schistosoma mansoni lung schistosomulum EST, clon...    44   7.6    1
(AM045174) Schistosoma mansoni lung schistosomulum EST, clon...    44   7.6    1
(AM044944) Schistosoma mansoni lung schistosomulum EST, clon...    44   7.6    1
(AM044790) Schistosoma mansoni lung schistosomulum EST, clon...    44   7.6    1
(AM044702) Schistosoma mansoni lung schistosomulum EST, clon...    44   7.6    1
(AM044293) Schistosoma mansoni lung schistosomulum EST, clon...    44   7.6    1
(AM044103) Schistosoma mansoni lung schistosomulum EST, clon...    44   7.6    1
(AM043982) Schistosoma mansoni lung schistosomulum EST, clon...    44   7.6    1
(AM043393) Schistosoma mansoni lung schistosomulum EST, clon...    44   7.6    1
(AM043111) Schistosoma mansoni lung schistosomulum EST, clon...    44   7.6    1
(CD154695) ML1-0036T-L175-H03-U.B ML1-0036 Schistosoma manso...    44   7.6    1
(BQ443195) UI-M-EV0-bxg-k-11-0-UI.r1 NIH_BMAP_EV0 Mus muscul...    44   7.6    1
(BI508935) BB170012B10E06.5 Bee Brain Normalized/Subtracted ...    44   7.6    1
(FC839045) CBHI8106.rev CBHI Metridium senile tentacle Metri...    44   7.6    1
(CP000768) Campylobacter jejuni subsp. doylei 269.97, comple...    44   7.6    1
(AC156909) Bos taurus clone CH240-59M6, WORKING DRAFT SEQUEN...    36   8.0    7
(CN630776) taf51c11.x1 Hydra EST Darmstadt I Hydra magnipapi...    36   8.1    2
(CU928689) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   8.8    3
(CO823999) LM_GB5_004325 Locusta migratoria gregarious phase...    36   9.0    2
(CU469426) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   9.0    2
(AC084459) Caenorhabditis briggsae cosmid CB032J19, complete...    40   9.0    4
(CN631097) taf51c11.y1 Hydra EST Darmstadt I Hydra magnipapi...    36   9.5    2
(CW119528) 104_496_11108820_116_34639_040 Sorghum methylatio...    38   9.6    2
(AE002154) Ureaplasma parvum serovar 3 str. ATCC 700970 sect...    36   9.8    3
(AL158824) Human DNA sequence from clone RP11-165N19 on chro...    40   9.9    2
(AC156205) Bos taurus clone CH240-39O5, WORKING DRAFT SEQUEN...    36   9.9    3
(AC151154) Bos taurus clone CH240-463J15, WORKING DRAFT SEQU...    32   9.9    8

>(AF205061) Dictyostelium discoideum phosphatidylinositol transfer
           protein 1 (pitA) mRNA, complete cds.
          Length = 837

 Score = 1179 bits (595), Expect = 0.0
 Identities = 595/595 (100%)
 Strand = Plus / Plus


Query: 155 aacatgaaggtcaatacactcataaaatatatcatcttggttcacgtcttccaggttgga 214
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 aacatgaaggtcaatacactcataaaatatatcatcttggttcacgtcttccaggttgga 223


Query: 215 ttagagctctcattccatcatctgctttaaaattagaagaaaaagcttggaatgcttatc 274
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 ttagagctctcattccatcatctgctttaaaattagaagaaaaagcttggaatgcttatc 283


Query: 275 catattgtaaaaccgttttaaaaagtccatttttaggtgaaaaattcacttttatcattg 334
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 catattgtaaaaccgttttaaaaagtccatttttaggtgaaaaattcacttttatcattg 343


Query: 335 aatctcgtcatgctcaagataattgtaaaactgaaaatattcataacctttcagaaaaag 394
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 aatctcgtcatgctcaagataattgtaaaactgaaaatattcataacctttcagaaaaag 403


Query: 395 aattaaaagaaagaacagttgaagttattgatattacaaaaccaattaaagatccaaaaa 454
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 aattaaaagaaagaacagttgaagttattgatattacaaaaccaattaaagatccaaaaa 463


Query: 455 attataaagagactgaagatccaacaaaaatcagatcagagaaagcaaaccgtggtccat 514
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 attataaagagactgaagatccaacaaaaatcagatcagagaaagcaaaccgtggtccat 523


Query: 515 tagaagaggagaaatggagagaaagtacagaaatgccaattatgacatgttacaaattag 574
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tagaagaggagaaatggagagaaagtacagaaatgccaattatgacatgttacaaattag 583


Query: 575 tcactgtcgaatttaaatattttggattccaaactaaagttgaaaactttatgatgggta 634
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 tcactgtcgaatttaaatattttggattccaaactaaagttgaaaactttatgatgggta 643


Query: 635 ttgaatttgatctcttcaccaaattccatagacaagtctattgttggttagatgaatggt 694
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 ttgaatttgatctcttcaccaaattccatagacaagtctattgttggttagatgaatggt 703


Query: 695 tcggaatgtcaatggatgacgttagagctttcgaattaaaaactaaagaagatct 749
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 tcggaatgtcaatggatgacgttagagctttcgaattaaaaactaaagaagatct 758

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 959,665,022
Number of extensions: 60266997
Number of successful extensions: 5054661
Number of sequences better than 10.0: 223
Length of query: 749
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 725
Effective length of database: 99,340,224,878
Effective search space: 72021663036550
Effective search space used: 72021663036550
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.19
Homology vs Protein 
Query= Contig-U02301-1 (Contig-U02301-1Q) /CSM_Contig/Contig-U02301-1Q.Seq.d
         (749 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT080689_1(BT080689|pid:none) Caligus clemensi clone ccle-evs-50...   219   6e-56
AE014297_2738(AE014297|pid:none) Drosophila melanogaster chromos...   209   6e-53
(Q9NCL7) RecName: Full=Phosphatidylinositol transfer protein 2; ...   203   4e-51
AY814655_1(AY814655|pid:none) Schistosoma japonicum SJCHGC09405 ...   199   8e-50
FN357353_6(FN357353|pid:none) Schistosoma mansoni genome sequenc...   192   1e-47
FN317771_1(FN317771|pid:none) Schistosoma japonicum isolate Anhu...   191   2e-47
(Q54VC7) RecName: Full=Phosphatidylinositol transfer protein 3; ...   190   5e-47
(P48738) RecName: Full=Phosphatidylinositol transfer protein alp...   187   4e-46
(Q2HJ54) RecName: Full=Phosphatidylinositol transfer protein alp...   186   5e-46
(P53810) RecName: Full=Phosphatidylinositol transfer protein alp...   186   7e-46
AK165659_1(AK165659|pid:none) Mus musculus RCB-1283 B16 melanoma...   186   7e-46
AK149745_1(AK149745|pid:none) Mus musculus bone marrow macrophag...   186   7e-46
(Q00169) RecName: Full=Phosphatidylinositol transfer protein alp...   186   7e-46
D30036_1(D30036|pid:none) Human mRNA for phosphatidylinositol tr...   186   7e-46
(P16446) RecName: Full=Phosphatidylinositol transfer protein alp...   186   9e-46
BC068538_1(BC068538|pid:none) Homo sapiens phosphatidylinositol ...   185   2e-45
DQ214201_1(DQ214201|pid:none) Taeniopygia guttata clone 0063P002...   185   2e-45
BT079649_1(BT079649|pid:none) Esox lucius clone eluc-evq-514-288...   184   3e-45
BC046882_1(BC046882|pid:none) Danio rerio zgc:55645, mRNA (cDNA ...   182   1e-44
BC135421_1(BC135421|pid:none) Xenopus tropicalis phosphatidylino...   180   5e-44
BC047829_1(BC047829|pid:none) Danio rerio phosphotidylinositol t...   179   6e-44
BC022230_1(BC022230|pid:none) Homo sapiens phosphatidylinositol ...   179   6e-44
AK312886_1(AK312886|pid:none) Homo sapiens cDNA, FLJ93330, highl...   179   6e-44
X98654_1(X98654|pid:none) H.sapiens mRNA for DRES9 protein.           179   6e-44
AE014298_2047(AE014298|pid:none) Drosophila melanogaster chromos...   179   1e-43
(P43125) RecName: Full=Protein retinal degeneration B; AltName: ...   179   1e-43
AK302367_1(AK302367|pid:none) Homo sapiens cDNA FLJ53628 complet...   178   1e-43
JC5615(JC5615)membrane-associated phosphatidyl inositol transfer...   178   1e-43
(P48739) RecName: Full=Phosphatidylinositol transfer protein bet...   178   1e-43
BC077831_1(BC077831|pid:none) Xenopus laevis phosphatidylinosito...   177   3e-43
(Q5R6F0) RecName: Full=Phosphatidylinositol transfer protein bet...   176   5e-43
BC123000_1(BC123000|pid:none) Xenopus tropicalis hypothetical pr...   176   5e-43
BC168561_1(BC168561|pid:none) Xenopus tropicalis cDNA clone MGC:...   176   5e-43
AC024814_2(AC024814|pid:none) Caenorhabditis elegans cosmid Y54F...   176   5e-43
BC061538_1(BC061538|pid:none) Rattus norvegicus phosphatidylinos...   175   2e-42
(P53812) RecName: Full=Phosphatidylinositol transfer protein bet...   175   2e-42
BC034676_1(BC034676|pid:none) Mus musculus phosphatidylinositol ...   174   2e-42
BC168908_1(BC168908|pid:none) Rattus norvegicus phosphatidylinos...   173   6e-42
BC070452_1(BC070452|pid:none) Mus musculus phosphatidylinositol ...   172   1e-41
AK129364_1(AK129364|pid:none) Mus musculus mRNA for mKIAA1457 pr...   172   1e-41
AF058693_1(AF058693|pid:none) Mus musculus M-RdgB2 retinal degen...   172   1e-41
FJ861208_1(FJ861208|pid:none) Bos taurus phosphatidylinositol tr...   172   1e-41
AK147486_1(AK147486|pid:none) Mus musculus cDNA, RIKEN full-leng...   172   1e-41
A61221(A61221) probable calcium transporter rdgB - fruit fly (Dr...   170   4e-41
Y08035_1(Y08035|pid:none) D.melanogaster mRNA for retinal degene...   170   4e-41
BC056087_1(BC056087|pid:none) Xenopus laevis phosphotidylinosito...   169   1e-40
(Q9BZ72) RecName: Full=Membrane-associated phosphatidylinositol ...   168   1e-40
BC141813_1(BC141813|pid:none) Homo sapiens phosphatidylinositol ...   168   1e-40
AB179084_1(AB179084|pid:none) Macaca fascicularis testis cDNA cl...   167   4e-40
AM448162_1(AM448162|pid:none) Vitis vinifera contig VV78X232060....   167   4e-40
(Q9U9P7) RecName: Full=Cytoplasmic phosphatidylinositol transfer...   161   2e-38
AK303986_1(AK303986|pid:none) Homo sapiens cDNA FLJ52181 complet...   156   8e-37
(Q8K4R4) RecName: Full=Cytoplasmic phosphatidylinositol transfer...   150   5e-35
AK003844_1(AK003844|pid:none) Mus musculus 18-day embryo whole b...   150   5e-35
FJ458422_1(FJ458422|pid:none) Sus scrofa phosphatidylinositol tr...   150   5e-35
AB077281_1(AB077281|pid:none) Mus musculus M-rdgB beta mRNA for ...   147   3e-34
BC007905_1(BC007905|pid:none) Homo sapiens phosphatidylinositol ...   147   5e-34
AK290838_1(AK290838|pid:none) Homo sapiens cDNA FLJ77092 complet...   147   5e-34
AL844509_497(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...   146   6e-34
BC118687_1(BC118687|pid:none) Xenopus tropicalis cDNA clone MGC:...   139   7e-32
AK171340_1(AK171340|pid:none) Mus musculus B6-derived CD11 +ve d...   136   8e-31
BC074354_1(BC074354|pid:none) Xenopus laevis MGC84224 protein, m...   130   3e-29
AC116986_84(AC116986|pid:none) Dictyostelium discoideum chromoso...   127   5e-28
BC085397_1(BC085397|pid:none) Danio rerio zgc:101640, mRNA (cDNA...   124   3e-27
AL596116_10(AL596116|pid:none) Mouse DNA sequence from clone RP2...   117   4e-25
AK153625_1(AK153625|pid:none) Mus musculus 3 days neonate thymus...   112   1e-23
AM910994_28(AM910994|pid:none) Plasmodium knowlesi strain H chro...   110   5e-23
A48214(A48214;S58430)phosphatidylinositol transfer protein alpha...    97   5e-19
AY500592_1(AY500592|pid:none) Equus caballus phosphatidylinosito...    91   5e-17
AP008209_1135(AP008209|pid:none) Oryza sativa (japonica cultivar...    90   9e-17
AX885682_1(AX885682|pid:none) Sequence 1545 from Patent EP1033401.     89   1e-16
AK123384_1(AK123384|pid:none) Homo sapiens cDNA FLJ41390 fis, cl...    79   2e-13
AL031591_5(AL031591|pid:none) Human DNA sequence from clone RP3-...    77   6e-13
AL590445_96(AL590445|pid:none) chromosome V of strain GB-M1 of E...    65   3e-09
CR940348_243(CR940348|pid:none) Theileria annulata strain Ankara...    47   5e-04
CP000425_1899(CP000425|pid:none) Lactococcus lactis subsp. cremo...    34   5.6
(Q23915) RecName: Full=Probable serine/threonine-protein kinase ...    34   5.6
CP000382_157(CP000382|pid:none) Clostridium novyi NT, complete g...    33   9.6

>BT080689_1(BT080689|pid:none) Caligus clemensi clone
           ccle-evs-508-143 Phosphatidylinositol transfer protein
           alpha isoform putative mRNA, complete cds.
          Length = 269

 Score =  219 bits (559), Expect = 6e-56
 Identities = 107/197 (54%), Positives = 138/197 (70%), Gaps = 1/197 (0%)
 Frame = +1

Query: 160 EGQYTHKIYHLGSRLPGWIRALIPSSALKLEEKAWNAYPYCKTVLKSP-FLGEKFTFIIE 336
           +GQYT+KIYHL S++P  IR ++P  AL++ E+AWNAYPYCKTVL +P ++ +KF   +E
Sbjct: 59  KGQYTYKIYHLASKVPSLIRYIVPKGALEIHEEAWNAYPYCKTVLTNPGYMDDKFYIKVE 118

Query: 337 SRHAQDNCKTENIHNLSEKELKERTVEVIDITKPIKDPKNYKETEDPTKIRSEKANRGPL 516
           + H  D   +EN+H L   +LK R V  IDI K      +YKE EDP+K +SEK  RGPL
Sbjct: 119 TYHLADRGDSENVHELEADKLKNREVIKIDIAKDDVTRGDYKENEDPSKYKSEKTGRGPL 178

Query: 517 EEEKWRESTEMPIMTCYKLVTVEFKYFGFQTKVENFMMGIEFDLFTKFHRQVYCWLDEWF 696
            E  W +S + P+MT YKLVTV+FK+FG Q KVENF+   E  LF  FHRQV+CW D W
Sbjct: 179 GEN-WIKSVD-PVMTAYKLVTVQFKWFGLQGKVENFIQQTERRLFLNFHRQVFCWTDRWH 236

Query: 697 GMSMDDVRAFELKTKED 747
           G++MDD+RA E KTKED
Sbjct: 237 GLTMDDIRAIEDKTKED 253

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 981,137,508
Number of extensions: 17307875
Number of successful extensions: 46454
Number of sequences better than 10.0: 78
Number of HSP's gapped: 46207
Number of HSP's successfully gapped: 78
Length of query: 249
Length of database: 1,051,180,864
Length adjustment: 125
Effective length of query: 124
Effective length of database: 646,610,989
Effective search space: 80179762636
Effective search space used: 80179762636
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.72  gvh: 0.49  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.08  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 32.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U02301-1 is nuc
VS (DIR, S) 3
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0